DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.683e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0215109

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.4605	0.0652
In_3R_Mo	4.8946	0.0865

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2280 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7442907	2R_7442907_SNP [dm3] 2R_11555402_SNP [dm6]	T	C	1.624e^-7	0.302	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	6.436e^-7	0.332	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10287406	3L_10287406_SNP [dm3] 3L_10294306_SNP [dm6]	C	G	6.802e^-7	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21980761	X_21980761_SNP [dm3] X_22578925_SNP [dm6]	A	T	1.010e^-6	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13569252	3R_13569252_SNP [dm3] 3R_17743530_SNP [dm6]	G	A	1.251e^-6	0.332	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21980775	X_21980775_SNP [dm3] X_22578939_SNP [dm6]	T	A	1.333e^-6	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981036	X_21981036_INS [dm3] X_22579200_INS [dm6]	T	TAT	1.333e^-6	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	1.611e^-6	0.332	INTERGENIC
3L	6111784	3L_6111784_SNP [dm3] 3L_6118684_SNP [dm6]	A	G	1.659e^-6	0.332	INTRON Ets65A
3L	7497052	3L_7497052_SNP [dm3] 3L_7503952_SNP [dm6]	A	T	1.786e^-6	0.332	INTERGENIC
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	2.648e^-6	0.399	INTRON CAH2
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	2.658e^-6	0.399	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11304890	3L_11304890_SNP [dm3] 3L_11311790_SNP [dm6]	A	G	2.856e^-6	0.399	START_GAINED CG7573 UTR_5_PRIME CG7573
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	3.140e^-6	0.399	INTRON Ca-beta
3L	11303552	3L_11303552_SNP [dm3] 3L_11310452_SNP [dm6]	T	C	3.940e^-6	0.399	INTERGENIC
3L	18824273	3L_18824273_SNP [dm3] 3L_18831173_SNP [dm6]	G	A	4.117e^-6	0.399	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
2L	11288248	2L_11288248_SNP [dm3] 2L_11288248_SNP [dm6]	T	C	4.758e^-6	0.399	INTERGENIC
2L	11288249	2L_11288249_SNP [dm3] 2L_11288249_SNP [dm6]	T	A	4.758e^-6	0.399	INTERGENIC
3R	25451580	3R_25451580_SNP [dm3] 3R_29625858_SNP [dm6]	C	A	5.120e^-6	0.399	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25451581	3R_25451581_SNP [dm3] 3R_29625859_SNP [dm6]	C	A	5.120e^-6	0.399	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11288289	2L_11288289_SNP [dm3] 2L_11288289_SNP [dm6]	A	C	5.251e^-6	0.399	INTERGENIC
2L	11288236	2L_11288236_DEL [dm3] 2L_11288236_DEL [dm6]	GG	A	5.419e^-6	0.399	INTERGENIC
2L	11288293	2L_11288293_SNP [dm3] 2L_11288293_SNP [dm6]	A	G	5.419e^-6	0.399	INTERGENIC
2L	11288294	2L_11288294_SNP [dm3] 2L_11288294_SNP [dm6]	T	G	5.419e^-6	0.399	INTERGENIC
3R	10314647	3R_10314647_SNP [dm3] 3R_14488925_SNP [dm6]	T	G	5.512e^-6	0.399	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2051124	2L_2051124_SNP [dm3] 2L_2051124_SNP [dm6]	T	G	5.654e^-6	0.399	INTERGENIC
2L	11288243	2L_11288243_SNP [dm3] 2L_11288243_SNP [dm6]	G	T	6.428e^-6	0.399	INTERGENIC
2L	11288275	2L_11288275_SNP [dm3] 2L_11288275_SNP [dm6]	T	C	6.706e^-6	0.399	INTERGENIC
X	15794685	X_15794685_SNP [dm3] X_15900652_SNP [dm6]	A	G	6.922e^-6	0.399	INTRON shi
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	7.162e^-6	0.399	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11505068	3L_11505068_SNP [dm3] 3L_11511968_SNP [dm6]	G	C	7.393e^-6	0.399	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2L	11192164	2L_11192164_SNP [dm3] 2L_11192164_SNP [dm6]	A	G	7.501e^-6	0.399	INTRON Ca-beta
2L	8752094	2L_8752094_SNP [dm3] 2L_8752094_SNP [dm6]	T	C	7.833e^-6	0.399	UTR_5_PRIME CG45307 UPSTREAM CG12438
2L	11288345	2L_11288345_SNP [dm3] 2L_11288345_SNP [dm6]	T	A	7.934e^-6	0.399	INTERGENIC
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	8.260e^-6	0.399	UPSTREAM CR45341 INTRON CG17292
2R	10796875	2R_10796875_SNP [dm3] 2R_14909370_SNP [dm6]	C	A	8.659e^-6	0.399	INTRON CG10249
X	21964738	X_21964738_SNP [dm3] X_22562902_SNP [dm6]	A	G	9.131e^-6	0.399	INTERGENIC
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	9.184e^-6	0.399	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1712706	2L_1712706_SNP [dm3] 2L_1712706_SNP [dm6]	C	A	9.743e^-6	0.399	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
2L	4568520	2L_4568520_SNP [dm3] 2L_4568520_SNP [dm6]	T	C	9.765e^-6	0.399	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	9.906e^-6	0.399	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	21979618	X_21979618_SNP [dm3] X_22577782_SNP [dm6]	T	A	1.079e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979628	X_21979628_SNP [dm3] X_22577792_SNP [dm6]	C	T	1.079e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19447315	3R_19447315_SNP [dm3] 3R_23621593_SNP [dm6]	T	A	1.086e^-5	0.399	INTRON CG31145
X	21965798	X_21965798_SNP [dm3] X_22563962_SNP [dm6]	T	C	1.139e^-5	0.399	INTERGENIC
X	21975409	X_21975409_SNP [dm3] X_22573573_SNP [dm6]	C	T	1.139e^-5	0.399	INTERGENIC	transposable element FlyBase
X	21985152	X_21985152_SNP [dm3] X_22583316_SNP [dm6]	G	A	1.181e^-5	0.399	DOWNSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15794712	X_15794712_SNP [dm3] X_15900679_SNP [dm6]	A	G	1.227e^-5	0.399	INTRON shi
3L	5417071	3L_5417071_SNP [dm3] 3L_5423971_SNP [dm6]	A	G	1.462e^-5	0.399	UPSTREAM CG34391 INTERGENIC
3L	9499529	3L_9499529_SNP [dm3] 3L_9506429_SNP [dm6]	A	T	1.511e^-5	0.399	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10810457	3R_10810457_SNP [dm3] 3R_14984735_SNP [dm6]	G	C	1.524e^-5	0.399	INTERGENIC
2R	16764707	2R_16764707_SNP [dm3] 2R_20877202_SNP [dm6]	A	T	1.595e^-5	0.399	INTRON Ipk1
2L	2498298	2L_2498298_SNP [dm3] 2L_2498298_SNP [dm6]	C	T	1.725e^-5	0.399	UTR_3_PRIME oaf DOWNSTREAM oaf
X	2324822	X_2324822_SNP [dm3] X_2430789_SNP [dm6]	G	T	1.726e^-5	0.399	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7221082	3L_7221082_SNP [dm3] 3L_7227982_SNP [dm6]	T	A	1.779e^-5	0.399	INTERGENIC
X	19398092	X_19398092_SNP [dm3] X_19504059_SNP [dm6]	G	T	1.792e^-5	0.399	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9499501	3L_9499501_SNP [dm3] 3L_9506401_SNP [dm6]	G	A	1.809e^-5	0.399	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	21981584	X_21981584_SNP [dm3] X_22579748_SNP [dm6]	G	C	1.826e^-5	0.399	INTERGENIC
X	21972159	X_21972159_SNP [dm3] X_22570323_SNP [dm6]	C	A	1.854e^-5	0.399	INTERGENIC
X	21961909	X_21961909_SNP [dm3] X_22560073_SNP [dm6]	G	A	1.902e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11184069	2L_11184069_SNP [dm3] 2L_11184069_SNP [dm6]	A	T	1.920e^-5	0.399	INTRON Ca-beta
3L	7395815	3L_7395815_SNP [dm3] 3L_7402715_SNP [dm6]	C	A	1.959e^-5	0.399	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21979128	X_21979128_INS [dm3] X_22577292_INS [dm6]	A	AACGAAAA	1.961e^-5	0.399	INTERGENIC
3R	11613964	3R_11613964_SNP [dm3] 3R_15788242_SNP [dm6]	A	G	1.994e^-5	0.399	UTR_3_PRIME CG9590 UPSTREAM CG9589	TF binding site mE1_TFBS_cad
X	21961830	X_21961830_DEL [dm3] X_22559994_DEL [dm6]	TCAACATTATGACAG...	T	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21972015	X_21972015_SNP [dm3] X_22570179_SNP [dm6]	T	A	1.994e^-5	0.399	INTERGENIC
X	21972016	X_21972016_SNP [dm3] X_22570180_SNP [dm6]	C	A	1.994e^-5	0.399	INTERGENIC
X	21972056	X_21972056_SNP [dm3] X_22570220_SNP [dm6]	T	A	1.994e^-5	0.399	INTERGENIC
X	21972083	X_21972083_SNP [dm3] X_22570247_SNP [dm6]	G	A	1.994e^-5	0.399	INTERGENIC
X	21972923	X_21972923_SNP [dm3] X_22571087_SNP [dm6]	C	A	1.994e^-5	0.399	INTERGENIC
X	21972928	X_21972928_SNP [dm3] X_22571092_SNP [dm6]	G	T	1.994e^-5	0.399	INTERGENIC
X	21973164	X_21973164_SNP [dm3] X_22571328_SNP [dm6]	G	A	1.994e^-5	0.399	INTERGENIC
X	21973311	X_21973311_SNP [dm3] X_22571475_SNP [dm6]	A	T	1.994e^-5	0.399	INTERGENIC
X	21973312	X_21973312_SNP [dm3] X_22571476_SNP [dm6]	T	C	1.994e^-5	0.399	INTERGENIC
X	21973382	X_21973382_SNP [dm3] X_22571546_SNP [dm6]	T	C	1.994e^-5	0.399	INTERGENIC
X	21973398	X_21973398_SNP [dm3] X_22571562_SNP [dm6]	C	A	1.994e^-5	0.399	INTERGENIC
X	21973411	X_21973411_SNP [dm3] X_22571575_SNP [dm6]	G	A	1.994e^-5	0.399	INTERGENIC
X	21973474	X_21973474_SNP [dm3] X_22571638_SNP [dm6]	G	C	1.994e^-5	0.399	INTERGENIC
X	21974329	X_21974329_SNP [dm3] X_22572493_SNP [dm6]	C	T	1.994e^-5	0.399	INTERGENIC
X	21975301	X_21975301_SNP [dm3] X_22573465_SNP [dm6]	C	T	1.994e^-5	0.399	INTERGENIC
X	21975373	X_21975373_SNP [dm3] X_22573537_SNP [dm6]	C	T	1.994e^-5	0.399	INTERGENIC	transposable element FlyBase
X	21977231	X_21977231_SNP [dm3] X_22575395_SNP [dm6]	T	C	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	21979525	X_21979525_SNP [dm3] X_22577689_SNP [dm6]	G	A	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979538	X_21979538_SNP [dm3] X_22577702_SNP [dm6]	G	A	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979545	X_21979545_SNP [dm3] X_22577709_SNP [dm6]	C	T	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979559	X_21979559_SNP [dm3] X_22577723_SNP [dm6]	C	T	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981074	X_21981074_SNP [dm3] X_22579238_SNP [dm6]	T	G	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981377	X_21981377_SNP [dm3] X_22579541_SNP [dm6]	A	G	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981409	X_21981409_SNP [dm3] X_22579573_SNP [dm6]	G	C	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21982300	X_21982300_SNP [dm3] X_22580464_SNP [dm6]	G	A	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21982557	X_21982557_SNP [dm3] X_22580721_SNP [dm6]	C	G	1.994e^-5	0.399	INTERGENIC
X	21984047	X_21984047_SNP [dm3] X_22582211_SNP [dm6]	A	C	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21984258	X_21984258_SNP [dm3] X_22582422_SNP [dm6]	T	C	1.994e^-5	0.399	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12858903	3L_12858903_SNP [dm3] 3L_12865803_SNP [dm6]	A	C	2.067e^-5	0.409	INTERGENIC
3L	1536652	3L_1536652_SNP [dm3] 3L_1536652_SNP [dm6]	A	G	2.114e^-5	0.41	UTR_5_PRIME CG12091 UPSTREAM CG7852	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	1536657	3L_1536657_SNP [dm3] 3L_1536657_SNP [dm6]	G	T	2.114e^-5	0.41	UTR_5_PRIME CG12091 UPSTREAM CG7852	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	5261010	2L_5261010_SNP [dm3] 2L_5261010_SNP [dm6]	G	A	2.137e^-5	0.41	INTRON tkv
2L	11288419	2L_11288419_SNP [dm3] 2L_11288419_SNP [dm6]	A	G	2.171e^-5	0.412	INTERGENIC
3L	9499514	3L_9499514_SNP [dm3] 3L_9506414_SNP [dm6]	A	G	2.194e^-5	0.412	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	21972251	X_21972251_SNP [dm3] X_22570415_SNP [dm6]	C	T	2.236e^-5	0.414	INTERGENIC
2L	10924854	2L_10924854_SNP [dm3] 2L_10924854_SNP [dm6]	G	A	2.260e^-5	0.414	INTRON dpr2
2L	20331596	2L_20331596_SNP [dm3] 2L_20331596_SNP [dm6]	G	C	2.301e^-5	0.414	INTRON spir
X	21983419	X_21983419_SNP [dm3] X_22581583_SNP [dm6]	T	G	2.317e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19669407	3L_19669407_SNP [dm3] 3L_19676307_SNP [dm6]	A	G	2.331e^-5	0.414	INTERGENIC
3R	25451217	3R_25451217_SNP [dm3] 3R_29625495_SNP [dm6]	G	A	2.369e^-5	0.414	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21977881	X_21977881_SNP [dm3] X_22576045_SNP [dm6]	T	C	2.390e^-5	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9492423	3L_9492423_SNP [dm3] 3L_9499323_SNP [dm6]	C	A	2.391e^-5	0.414	INTRON path
X	15086279	X_15086279_SNP [dm3] X_15192246_SNP [dm6]	T	A	2.406e^-5	0.414	INTERGENIC
2R	16834779	2R_16834779_SNP [dm3] 2R_20947274_SNP [dm6]	C	A	2.454e^-5	0.416	DOWNSTREAM Act57B INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5350075	3L_5350075_SNP [dm3] 3L_5356975_SNP [dm6]	A	G	2.480e^-5	0.416	UTR_3_PRIME Klp64D UPSTREAM tRNA:CR32421 DOWNSTREAM tRNA:CR32420
2L	8501820	2L_8501820_DEL [dm3] 2L_8501820_DEL [dm6]	CCCAC	C	2.481e^-5	0.416	INTRON Dh31
3R	26595432	3R_26595432_SNP [dm3] 3R_30769710_SNP [dm6]	A	G	2.546e^-5	0.419	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14152555	3L_14152555_SNP [dm3] 3L_14159455_SNP [dm6]	C	T	2.572e^-5	0.419	INTERGENIC	regulatory region REDfly_CRMs
2L	758281	2L_758281_SNP [dm3] 2L_758281_SNP [dm6]	A	T	2.576e^-5	0.419	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7290467	3L_7290467_SNP [dm3] 3L_7297367_SNP [dm6]	A	G	2.597e^-5	0.419	INTRON unc-13-4A
X	21979756	X_21979756_SNP [dm3] X_22577920_SNP [dm6]	A	T	2.637e^-5	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21979759	X_21979759_SNP [dm3] X_22577923_SNP [dm6]	T	A	2.637e^-5	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10049363	2L_10049363_SNP [dm3] 2L_10049363_SNP [dm6]	C	T	2.682e^-5	0.42	UPSTREAM CG33301 INTERGENIC
2L	11292759	2L_11292759_SNP [dm3] 2L_11292759_SNP [dm6]	C	T	2.798e^-5	0.42	INTERGENIC
3R	13569251	3R_13569251_SNP [dm3] 3R_17743529_SNP [dm6]	G	A	2.806e^-5	0.42	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13569300	3R_13569300_SNP [dm3] 3R_17743578_SNP [dm6]	C	T	2.806e^-5	0.42	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13569303	3R_13569303_SNP [dm3] 3R_17743581_SNP [dm6]	T	C	2.806e^-5	0.42	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7439411	3R_7439411_SNP [dm3] 3R_11613689_SNP [dm6]	A	G	2.812e^-5	0.42	INTRON Jupiter	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	11917250	2L_11917250_SNP [dm3] 2L_11917250_SNP [dm6]	G	A	2.812e^-5	0.42	INTRON Pde1c
X	21978715	X_21978715_SNP [dm3] X_22576879_SNP [dm6]	G	T	2.861e^-5	0.42	INTERGENIC	transposable element FlyBase
3L	8413813	3L_8413813_SNP [dm3] 3L_8420713_SNP [dm6]	G	T	2.884e^-5	0.42	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
2R	5104902	2R_5104902_SNP [dm3] 2R_9217397_SNP [dm6]	C	T	2.916e^-5	0.42	INTERGENIC
3L	14152548	3L_14152548_SNP [dm3] 3L_14159448_SNP [dm6]	C	T	2.956e^-5	0.42	INTERGENIC	regulatory region REDfly_CRMs
3R	2240193	3R_2240193_SNP [dm3] 3R_6414471_SNP [dm6]	A	T	3.002e^-5	0.42	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20515299	2R_20515299_SNP [dm3] 2R_24627776_SNP [dm6]	T	C	3.028e^-5	0.42	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
2R	1343018	2R_1343018_SNP [dm3] 2R_5455513_SNP [dm6]	G	A	3.034e^-5	0.42	UTR_3_PRIME laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21974309	X_21974309_SNP [dm3] X_22572473_SNP [dm6]	A	G	3.060e^-5	0.42	INTERGENIC
X	14059530	X_14059530_SNP [dm3] X_14165497_SNP [dm6]	T	G	3.072e^-5	0.42	INTERGENIC
3R	2276781	3R_2276781_SNP [dm3] 3R_6451059_SNP [dm6]	G	A	3.078e^-5	0.42	UTR_3_PRIME CG9727 DOWNSTREAM CG9727	TF binding site mE1_TFBS_cad
3R	9855212	3R_9855212_SNP [dm3] 3R_14029490_SNP [dm6]	T	A	3.132e^-5	0.42	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	12734395	3L_12734395_SNP [dm3] 3L_12741295_SNP [dm6]	A	G	3.133e^-5	0.42	UTR_3_PRIME Ptp69D UPSTREAM CG32112
3R	10810613	3R_10810613_SNP [dm3] 3R_14984891_SNP [dm6]	T	A	3.157e^-5	0.42	INTERGENIC
3L	10819006	3L_10819006_SNP [dm3] 3L_10825906_SNP [dm6]	A	T	3.180e^-5	0.42	DOWNSTREAM CR45246 INTERGENIC
3L	8413815	3L_8413815_SNP [dm3] 3L_8420715_SNP [dm6]	G	T	3.223e^-5	0.42	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
X	21981555	X_21981555_SNP [dm3] X_22579719_SNP [dm6]	G	A	3.256e^-5	0.42	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	683270	2L_683270_SNP [dm3] 2L_683270_SNP [dm6]	C	A	3.259e^-5	0.42	INTRON ds	TF binding site BDTNP1_TFBS_twi
2L	683393	2L_683393_SNP [dm3] 2L_683393_SNP [dm6]	G	A	3.259e^-5	0.42	INTRON ds
2L	685167	2L_685167_SNP [dm3] 2L_685167_SNP [dm6]	C	G	3.259e^-5	0.42	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19072143	3L_19072143_SNP [dm3] 3L_19079043_SNP [dm6]	C	A	3.322e^-5	0.42	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2264922	3R_2264922_SNP [dm3] 3R_6439200_SNP [dm6]	C	T	3.354e^-5	0.42	INTRON gpp
3R	2273966	3R_2273966_SNP [dm3] 3R_6448244_SNP [dm6]	A	T	3.354e^-5	0.42	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_zfh1
3R	2282737	3R_2282737_SNP [dm3] 3R_6457015_SNP [dm6]	G	T	3.354e^-5	0.42	UPSTREAM Zif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	2288776	3R_2288776_SNP [dm3] 3R_6463054_SNP [dm6]	C	A	3.354e^-5	0.42	INTERGENIC
3L	7921417	3L_7921417_SNP [dm3] 3L_7928317_SNP [dm6]	G	T	3.367e^-5	0.42	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13182162	3L_13182162_SNP [dm3] 3L_13189062_SNP [dm6]	A	T	3.515e^-5	0.436	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12504010	3L_12504010_SNP [dm3] 3L_12510910_SNP [dm6]	G	A	3.579e^-5	0.441	SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
3L	19390976	3L_19390976_SNP [dm3] 3L_19397876_SNP [dm6]	T	A	3.651e^-5	0.444	INTRON CG32206
X	15794609	X_15794609_SNP [dm3] X_15900576_SNP [dm6]	A	C	3.654e^-5	0.444	INTRON shi
2R	7066710	2R_7066710_SNP [dm3] 2R_11179205_SNP [dm6]	T	A	3.694e^-5	0.446	INTRON shn	TF binding site mE1_TFBS_inv
X	21952125	X_21952125_SNP [dm3] X_22550289_SNP [dm6]	A	T	3.744e^-5	0.449	INTERGENIC
3L	12306876	3L_12306876_INS [dm3] 3L_12313776_INS [dm6]	A	AA	3.774e^-5	0.45	INTERGENIC
2L	6610648	2L_6610648_SNP [dm3] 2L_6610648_SNP [dm6]	C	T	3.925e^-5	0.465	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	14239542	3R_14239542_INS [dm3] 3R_18413820_INS [dm6]	C	CCATCAGAAAAGTAAACTAG...	3.963e^-5	0.467	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4959663	2L_4959663_SNP [dm3] 2L_4959663_SNP [dm6]	C	T	4.063e^-5	0.471	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21966608	X_21966608_SNP [dm3] X_22564772_SNP [dm6]	A	G	4.073e^-5	0.471	INTERGENIC
2R	8435171	2R_8435171_DEL [dm3] 2R_12547666_DEL [dm6]	TT	T	4.088e^-5	0.471	INTRON fra
2L	758274	2L_758274_SNP [dm3] 2L_758274_SNP [dm6]	A	T	4.097e^-5	0.471	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12194708	3L_12194708_SNP [dm3] 3L_12201608_SNP [dm6]	T	C	4.126e^-5	0.471	INTRON Adk1
3R	17399069	3R_17399069_SNP [dm3] 3R_21573347_SNP [dm6]	T	C	4.159e^-5	0.472	UTR_3_PRIME InR	TF binding site mE1_TFBS_cad
2L	13117351	2L_13117351_SNP [dm3] 2L_13117351_SNP [dm6]	T	A	4.199e^-5	0.473	INTERGENIC
3L	1257700	3L_1257700_DEL [dm3] 3L_1257700_DEL [dm6]	AGATCATAATAGAA...	A	4.242e^-5	0.475	INTRON CG9134
2L	13117290	2L_13117290_SNP [dm3] 2L_13117290_SNP [dm6]	T	C	4.322e^-5	0.477	INTERGENIC
2L	13616254	2L_13616254_SNP [dm3] 2L_13616254_SNP [dm6]	G	C	4.327e^-5	0.477	INTRON kuz
3L	3823388	3L_3823388_SNP [dm3] 3L_3823388_SNP [dm6]	T	C	4.395e^-5	0.477	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7066709	2R_7066709_SNP [dm3] 2R_11179204_SNP [dm6]	G	A	4.445e^-5	0.477	INTRON shn	TF binding site mE1_TFBS_inv
3R	2063820	3R_2063820_SNP [dm3] 3R_6238098_SNP [dm6]	G	A	4.477e^-5	0.477	DOWNSTREAM Osi6 INTERGENIC
2L	3238057	2L_3238057_SNP [dm3] 2L_3238057_SNP [dm6]	C	T	4.518e^-5	0.477	INTERGENIC
3L	6030879	3L_6030879_SNP [dm3] 3L_6037779_SNP [dm6]	C	T	4.547e^-5	0.477	SYNONYMOUS_CODING CG6462 DOWNSTREAM CR43952
3L	6030891	3L_6030891_SNP [dm3] 3L_6037791_SNP [dm6]	A	G	4.547e^-5	0.477	SYNONYMOUS_CODING CG6462 DOWNSTREAM CR43952
3L	6030892	3L_6030892_SNP [dm3] 3L_6037792_SNP [dm6]	G	C	4.547e^-5	0.477	NON_SYNONYMOUS_CODING CG6462 DOWNSTREAM CR43952
X	21981558	X_21981558_SNP [dm3] X_22579722_SNP [dm6]	C	A	4.585e^-5	0.477	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13380619	2R_13380619_SNP [dm3] 2R_17493114_SNP [dm6]	C	T	4.586e^-5	0.477	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	10568773	2L_10568773_SNP [dm3] 2L_10568773_SNP [dm6]	T	G	4.612e^-5	0.477	DOWNSTREAM CG6138 INTRON Trim9
3R	2298957	3R_2298957_SNP [dm3] 3R_6473235_SNP [dm6]	G	C	4.623e^-5	0.477	INTERGENIC
3R	24134287	3R_24134287_SNP [dm3] 3R_28308565_SNP [dm6]	T	C	4.643e^-5	0.477	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24134306	3R_24134306_SNP [dm3] 3R_28308584_SNP [dm6]	G	T	4.643e^-5	0.477	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11917224	2L_11917224_SNP [dm3] 2L_11917224_SNP [dm6]	C	G	4.667e^-5	0.477	INTRON Pde1c
2R	17235521	2R_17235521_SNP [dm3] 2R_21348016_SNP [dm6]	C	T	4.724e^-5	0.48	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
3R	4903991	3R_4903991_SNP [dm3] 3R_9078269_SNP [dm6]	C	T	4.810e^-5	0.486	INTRON pum
3R	15835448	3R_15835448_SNP [dm3] 3R_20009726_SNP [dm6]	A	C	4.833e^-5	0.486	SYNONYMOUS_CODING MED25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	437635	3L_437635_SNP [dm3] 3L_437635_SNP [dm6]	G	T	4.895e^-5	0.488	UTR_5_PRIME klar INTRON klar
2L	20331580	2L_20331580_SNP [dm3] 2L_20331580_SNP [dm6]	T	G	4.902e^-5	0.488	INTRON spir
X	21911758	X_21911758_SNP [dm3] X_22509922_SNP [dm6]	T	A	4.944e^-5	0.489	INTERGENIC	transposable element FlyBase
3R	15370151	3R_15370151_SNP [dm3] 3R_19544429_SNP [dm6]	T	A	4.993e^-5	0.489	INTRON Dys
3L	20518898	3L_20518898_SNP [dm3] 3L_20525798_SNP [dm6]	G	A	4.995e^-5	0.489	NON_SYNONYMOUS_CODING CG4825 UPSTREAM CG4858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13616248	2L_13616248_SNP [dm3] 2L_13616248_SNP [dm6]	G	T	5.038e^-5	0.491	INTRON kuz
2L	4568543	2L_4568543_SNP [dm3] 2L_4568543_SNP [dm6]	G	T	5.087e^-5	0.491	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1538284	3L_1538284_SNP [dm3] 3L_1538284_SNP [dm6]	C	A	5.097e^-5	0.491	INTRON CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13045781	2L_13045781_SNP [dm3] 2L_13045781_SNP [dm6]	T	C	5.146e^-5	0.491	INTRON CG9932
X	21982681	X_21982681_SNP [dm3] X_22580845_SNP [dm6]	A	T	5.147e^-5	0.491	INTERGENIC
3R	16641691	3R_16641691_SNP [dm3] 3R_20815969_SNP [dm6]	G	C	5.287e^-5	0.498	DOWNSTREAM CG17270 INTRON Fancd2	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	12842203	3L_12842203_SNP [dm3] 3L_12849103_SNP [dm6]	T	A	5.301e^-5	0.498	SPLICE_SITE_REGION CG10948 INTRON CG10948	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12303370	3L_12303370_SNP [dm3] 3L_12310270_SNP [dm6]	C	A	5.301e^-5	0.498	UPSTREAM CG44355 INTERGENIC
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	5.330e^-5	0.498	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	10430377	3L_10430377_SNP [dm3] 3L_10437277_SNP [dm6]	A	G	5.354e^-5	0.498	INTERGENIC
3L	14419687	3L_14419687_SNP [dm3] 3L_14426587_SNP [dm6]	T	C	5.429e^-5	0.5	INTRON bbg
X	20847874	X_20847874_SNP [dm3] X_20976847_SNP [dm6]	T	C	5.455e^-5	0.5	INTERGENIC
3R	26111910	3R_26111910_SNP [dm3] 3R_30286188_SNP [dm6]	C	G	5.493e^-5	0.5	INTRON hdc
3R	25455291	3R_25455291_SNP [dm3] 3R_29629569_SNP [dm6]	C	T	5.508e^-5	0.5	DOWNSTREAM Dop1R2 INTERGENIC
3R	2056599	3R_2056599_SNP [dm3] 3R_6230877_SNP [dm6]	G	A	5.521e^-5	0.5	INTERGENIC
3L	18823228	3L_18823228_SNP [dm3] 3L_18830128_SNP [dm6]	T	C	5.571e^-5	0.5	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	20336420	2L_20336420_SNP [dm3] 2L_20336420_SNP [dm6]	G	A	5.605e^-5	0.5	INTRON spir
3L	3823377	3L_3823377_SNP [dm3] 3L_3823377_SNP [dm6]	T	C	5.606e^-5	0.5	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7390249	3L_7390249_SNP [dm3] 3L_7397149_SNP [dm6]	A	C	5.654e^-5	0.5	NON_SYNONYMOUS_CODING CG32379
3L	7390266	3L_7390266_SNP [dm3] 3L_7397166_SNP [dm6]	A	G	5.654e^-5	0.5	NON_SYNONYMOUS_CODING CG32379
2L	13365432	2L_13365432_SNP [dm3] 2L_13365432_SNP [dm6]	A	G	5.672e^-5	0.5	SYNONYMOUS_CODING Nnp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17757444	2R_17757444_SNP [dm3] 2R_21869939_SNP [dm6]	G	A	5.801e^-5	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12300442	3L_12300442_SNP [dm3] 3L_12307342_SNP [dm6]	G	C	5.880e^-5	0.511	INTERGENIC
2L	17778893	2L_17778893_SNP [dm3] 2L_17778893_SNP [dm6]	A	C	5.902e^-5	0.511	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5624829	3L_5624829_SNP [dm3] 3L_5631729_SNP [dm6]	A	C	5.909e^-5	0.511	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14419665	3L_14419665_SNP [dm3] 3L_14426565_SNP [dm6]	C	T	5.950e^-5	0.513	INTRON bbg
3L	12507342	3L_12507342_SNP [dm3] 3L_12514242_SNP [dm6]	G	T	6.058e^-5	0.518	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	701024	2L_701024_SNP [dm3] 2L_701024_SNP [dm6]	T	G	6.074e^-5	0.518	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	7392852	3L_7392852_SNP [dm3] 3L_7399752_SNP [dm6]	A	T	6.124e^-5	0.518	UTR_3_PRIME CG8562 UPSTREAM CG18417
2R	9258515	2R_9258515_SNP [dm3] 2R_13371010_SNP [dm6]	A	T	6.152e^-5	0.518	INTERGENIC
3L	6030882	3L_6030882_SNP [dm3] 3L_6037782_SNP [dm6]	C	A	6.157e^-5	0.518	SYNONYMOUS_CODING CG6462 DOWNSTREAM CR43952
3L	12173725	3L_12173725_SNP [dm3] 3L_12180625_SNP [dm6]	C	T	6.189e^-5	0.518	INTRON CAH2
3R	2500888	3R_2500888_SNP [dm3] 3R_6675166_SNP [dm6]	A	G	6.213e^-5	0.518	INTRON lab	regulatory region FlyBase REDfly_CRMs
2L	8371537	2L_8371537_SNP [dm3] 2L_8371537_SNP [dm6]	T	A	6.323e^-5	0.525	UPSTREAM CR45341 & 1 other INTRON CG17292
3L	4722156	3L_4722156_SNP [dm3] 3L_4722156_SNP [dm6]	T	A	6.378e^-5	0.527	INTRON RhoGEF64C
2L	10904861	2L_10904861_SNP [dm3] 2L_10904861_SNP [dm6]	G	T	6.482e^-5	0.532	UPSTREAM CR45724 INTERGENIC
2L	11292363	2L_11292363_SNP [dm3] 2L_11292363_SNP [dm6]	G	A	6.514e^-5	0.532	INTERGENIC
X	21089273	X_21089273_SNP [dm3] X_21218246_SNP [dm6]	A	G	6.523e^-5	0.532	SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	21882791	2L_21882791_SNP [dm3] 2L_21882791_SNP [dm6]	G	C	6.545e^-5	0.532	INTERGENIC
4	121889	4_121889_SNP [dm3] 4_101263_SNP [dm6]	C	A	6.594e^-5	0.532	UTR_3_PRIME pan INTRON pan	transposable element FlyBase
2L	5727318	2L_5727318_SNP [dm3] 2L_5727318_SNP [dm6]	G	T	6.612e^-5	0.532	UTR_3_PRIME CG14006 INTRON CG11030	TF binding site mE1_TFBS_cad
3L	12507322	3L_12507322_SNP [dm3] 3L_12514222_SNP [dm6]	A	C	6.698e^-5	0.533	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17798529	2L_17798529_SNP [dm3] 2L_17798529_SNP [dm6]	G	A	6.723e^-5	0.533	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	17798535	2L_17798535_SNP [dm3] 2L_17798535_SNP [dm6]	T	C	6.723e^-5	0.533	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3L	1257676	3L_1257676_DEL [dm3] 3L_1257676_DEL [dm6]	CGAGTTATTTGTTAT...	C	6.776e^-5	0.533	INTRON CG9134
X	19924318	X_19924318_SNP [dm3] X_20030285_SNP [dm6]	A	G	6.789e^-5	0.533	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
3R	2240192	3R_2240192_SNP [dm3] 3R_6414470_SNP [dm6]	G	T	6.789e^-5	0.533	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15622060	3L_15622060_SNP [dm3] 3L_15628960_SNP [dm6]	A	T	6.821e^-5	0.533	INTRON comm3
2L	17798505	2L_17798505_SNP [dm3] 2L_17798505_SNP [dm6]	T	C	6.868e^-5	0.533	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2R	13212976	2R_13212976_SNP [dm3] 2R_17325471_SNP [dm6]	C	A	6.880e^-5	0.533	INTRON mbl
2L	13998264	2L_13998264_INS [dm3] 2L_13998264_INS [dm6]	T	TTAGAAAGT	6.930e^-5	0.533	INTRON rk
3L	10998379	3L_10998379_SNP [dm3] 3L_11005279_SNP [dm6]	C	G	6.947e^-5	0.533	INTRON klu
3L	12303647	3L_12303647_SNP [dm3] 3L_12310547_SNP [dm6]	A	G	6.994e^-5	0.533	UPSTREAM CG44355 INTERGENIC
2L	686819	2L_686819_SNP [dm3] 2L_686819_SNP [dm6]	C	G	7.017e^-5	0.533	INTRON ds
2L	7894547	2L_7894547_SNP [dm3] 2L_7894547_SNP [dm6]	G	T	7.060e^-5	0.533	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2910095	2R_2910095_SNP [dm3] 2R_7022590_SNP [dm6]	T	G	7.062e^-5	0.533	DOWNSTREAM CR44172 INTERGENIC
2L	11917403	2L_11917403_SNP [dm3] 2L_11917403_SNP [dm6]	C	T	7.081e^-5	0.533	INTRON Pde1c
3R	26578754	3R_26578754_SNP [dm3] 3R_30753032_SNP [dm6]	T	C	7.116e^-5	0.534	INTERGENIC
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	7.158e^-5	0.535	INTRON ed
2R	10447272	2R_10447272_SNP [dm3] 2R_14559767_SNP [dm6]	C	G	7.226e^-5	0.538	INTRON ttv
3R	2073980	3R_2073980_SNP [dm3] 3R_6248258_SNP [dm6]	A	C	7.279e^-5	0.539	UPSTREAM Osi7 INTERGENIC
3R	14287653	3R_14287653_SNP [dm3] 3R_18461931_SNP [dm6]	T	A	7.341e^-5	0.539	INTRON fru
2L	6610565	2L_6610565_SNP [dm3] 2L_6610565_SNP [dm6]	T	A	7.401e^-5	0.539	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	14152388	3L_14152388_SNP [dm3] 3L_14159288_SNP [dm6]	G	A	7.409e^-5	0.539	INTERGENIC	regulatory region REDfly_CRMs
3R	12560161	3R_12560161_SNP [dm3] 3R_16734439_SNP [dm6]	C	T	7.469e^-5	0.539	UPSTREAM Ubx INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5019268	X_5019268_SNP [dm3] X_5125235_SNP [dm6]	T	C	7.470e^-5	0.539	INTRON rg & 1 other
3R	11181742	3R_11181742_SNP [dm3] 3R_15356020_SNP [dm6]	C	T	7.482e^-5	0.539	SYNONYMOUS_CODING Atg4b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3823392	3L_3823392_SNP [dm3] 3L_3823392_SNP [dm6]	G	C	7.512e^-5	0.539	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11420540	3L_11420540_SNP [dm3] 3L_11427440_SNP [dm6]	T	G	7.534e^-5	0.539	INTERGENIC
2L	4187058	2L_4187058_SNP [dm3] 2L_4187058_SNP [dm6]	C	T	7.578e^-5	0.539	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
X	21911763	X_21911763_SNP [dm3] X_22509927_SNP [dm6]	T	A	7.580e^-5	0.539	INTERGENIC	transposable element FlyBase
3R	6381939	3R_6381939_SNP [dm3] 3R_10556217_SNP [dm6]	A	C	7.596e^-5	0.539	INTRON hth
3L	7395804	3L_7395804_SNP [dm3] 3L_7402704_SNP [dm6]	C	A	7.715e^-5	0.542	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20013621	2R_20013621_SNP [dm3] 2R_24126098_SNP [dm6]	T	A	7.730e^-5	0.542	NON_SYNONYMOUS_CODING CG43775 UTR_5_PRIME CG43776 & 1 other UPSTREAM CG43776 & 1 other DOWNSTREAM tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2025251	2L_2025251_SNP [dm3] 2L_2025251_SNP [dm6]	G	A	7.749e^-5	0.542	INTRON CG4238
2L	17798532	2L_17798532_SNP [dm3] 2L_17798532_SNP [dm6]	G	A	7.749e^-5	0.542	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	13258341	2L_13258341_SNP [dm3] 2L_13258341_SNP [dm6]	C	A	7.820e^-5	0.545	UTR_3_PRIME CG31851 DOWNSTREAM CG31728 & 2 others
2R	7079888	2R_7079888_SNP [dm3] 2R_11192383_SNP [dm6]	A	T	7.853e^-5	0.545	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12173757	3L_12173757_SNP [dm3] 3L_12180657_SNP [dm6]	A	C	7.964e^-5	0.547	INTRON CAH2
3L	12173758	3L_12173758_SNP [dm3] 3L_12180658_SNP [dm6]	C	T	7.964e^-5	0.547	INTRON CAH2
3L	12173772	3L_12173772_SNP [dm3] 3L_12180672_SNP [dm6]	G	A	7.964e^-5	0.547	INTRON CAH2
3R	11324566	3R_11324566_SNP [dm3] 3R_15498844_SNP [dm6]	C	A	8.077e^-5	0.551	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7771804	2L_7771804_INS [dm3] 2L_7771804_INS [dm6]	T	TT	8.085e^-5	0.551	INTRON CG7191	TF binding site BDTNP1_TFBS_twi
3R	3935467	3R_3935467_SNP [dm3] 3R_8109745_SNP [dm6]	T	G	8.197e^-5	0.553	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10116256	3L_10116256_SNP [dm3] 3L_10123156_SNP [dm6]	C	T	8.252e^-5	0.553	INTRON dpr6
2R	14617661	2R_14617661_SNP [dm3] 2R_18730156_SNP [dm6]	A	G	8.262e^-5	0.553	SYNONYMOUS_CODING List INTRON Hs3st-A
3R	2184082	3R_2184082_SNP [dm3] 3R_6358360_SNP [dm6]	G	A	8.265e^-5	0.553	NON_SYNONYMOUS_CODING Pak	TF binding site mE1_TFBS_cad
3L	9503522	3L_9503522_SNP [dm3] 3L_9510422_SNP [dm6]	A	T	8.280e^-5	0.553	UTR_3_PRIME RpS9 UPSTREAM CG3408 DOWNSTREAM snoRNA:Me28S-G3253 INTRON RpS9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13979638	3L_13979638_SNP [dm3] 3L_13986538_SNP [dm6]	T	G	8.288e^-5	0.553	UPSTREAM CG17362 INTRON CG17364
3R	2040580	3R_2040580_SNP [dm3] 3R_6214858_SNP [dm6]	G	A	8.505e^-5	0.565	UPSTREAM Osi3 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7836419	3L_7836419_SNP [dm3] 3L_7843319_SNP [dm6]	A	T	8.582e^-5	0.568	INTRON Pdp1	regulatory region REDfly_CRMs
2L	2448996	2L_2448996_SNP [dm3] 2L_2448996_SNP [dm6]	T	A	8.679e^-5	0.571	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19590130	2R_19590130_SNP [dm3] 2R_23702607_SNP [dm6]	G	A	8.707e^-5	0.571	UTR_5_PRIME l_2_dtl UPSTREAM CG4091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4357029	3L_4357029_SNP [dm3] 3L_4357029_SNP [dm6]	C	G	8.710e^-5	0.571	INTRON Cip4
X	6728895	X_6728895_SNP [dm3] X_6834862_SNP [dm6]	T	C	8.742e^-5	0.571	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2098734	2L_2098734_SNP [dm3] 2L_2098734_SNP [dm6]	G	A	8.881e^-5	0.575	INTRON dpr3
2L	2693336	2L_2693336_SNP [dm3] 2L_2693336_SNP [dm6]	A	G	8.882e^-5	0.575	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10998383	3L_10998383_DEL [dm3] 3L_11005283_DEL [dm6]	CACTCCGC	C	8.927e^-5	0.575	INTRON klu
3L	7489471	3L_7489471_SNP [dm3] 3L_7496371_SNP [dm6]	G	C	8.977e^-5	0.575	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3L	10943238	3L_10943238_SNP [dm3] 3L_10950138_SNP [dm6]	T	C	8.978e^-5	0.575	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25036770	3R_25036770_SNP [dm3] 3R_29211048_SNP [dm6]	T	G	8.997e^-5	0.575	INTERGENIC
2L	13433914	2L_13433914_SNP [dm3] 2L_13433914_SNP [dm6]	C	G	9.104e^-5	0.58	INTRON CG42784	TF binding site mE1_TFBS_cad
2L	10030079	2L_10030079_SNP [dm3] 2L_10030079_SNP [dm6]	T	C	9.161e^-5	0.582	DOWNSTREAM CG13127 INTERGENIC
2L	12449121	2L_12449121_SNP [dm3] 2L_12449121_SNP [dm6]	T	A	9.201e^-5	0.582	UPSTREAM CG5421 INTRON Oatp33Eb
2R	16356421	2R_16356421_SNP [dm3] 2R_20468916_SNP [dm6]	A	T	9.266e^-5	0.583	INTRON CG12484
2L	15900674	2L_15900674_SNP [dm3] 2L_15900674_SNP [dm6]	T	A	9.280e^-5	0.583	UPSTREAM CG31823 DOWNSTREAM CG31821 INTERGENIC
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	9.308e^-5	0.583	INTERGENIC
3R	4308673	3R_4308673_SNP [dm3] 3R_8482951_SNP [dm6]	T	A	9.340e^-5	0.583	INTERGENIC
3R	15128632	3R_15128632_SNP [dm3] 3R_19302910_SNP [dm6]	C	G	9.385e^-5	0.584	UTR_3_PRIME Dl DOWNSTREAM Dl
2L	4872460	2L_4872460_SNP [dm3] 2L_4872460_SNP [dm6]	A	T	9.431e^-5	0.585	INTRON pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	12811510	3L_12811510_SNP [dm3] 3L_12818410_SNP [dm6]	T	A	9.469e^-5	0.585	NON_SYNONYMOUS_CODING CG42588
3L	11459633	3L_11459633_SNP [dm3] 3L_11466533_SNP [dm6]	A	G	9.614e^-5	0.588	UPSTREAM CG6140 INTERGENIC
3L	8556396	3L_8556396_SNP [dm3] 3L_8563296_SNP [dm6]	C	G	9.669e^-5	0.588	INTRON rhea
3L	5235579	3L_5235579_SNP [dm3] 3L_5242479_SNP [dm6]	G	T	9.679e^-5	0.588	INTRON shep
3L	6598809	3L_6598809_SNP [dm3] 3L_6605709_SNP [dm6]	A	G	9.682e^-5	0.588	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4167656	2L_4167656_SNP [dm3] 2L_4167656_SNP [dm6]	T	A	9.755e^-5	0.588	INTERGENIC
2L	2733331	2L_2733331_SNP [dm3] 2L_2733331_SNP [dm6]	A	C	9.765e^-5	0.588	INTRON CG31689
2L	8098931	2L_8098931_SNP [dm3] 2L_8098931_SNP [dm6]	T	A	9.798e^-5	0.588	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8556386	3L_8556386_SNP [dm3] 3L_8563286_SNP [dm6]	G	T	9.850e^-5	0.588	INTRON rhea
2L	8501920	2L_8501920_SNP [dm3] 2L_8501920_SNP [dm6]	G	A	1.000e^-4	0.588	INTRON Dh31
3R	26111924	3R_26111924_SNP [dm3] 3R_30286202_SNP [dm6]	G	C	1.004e^-4	0.588	INTRON hdc
3R	11614230	3R_11614230_SNP [dm3] 3R_15788508_SNP [dm6]	G	T	1.006e^-4	0.588	UPSTREAM CG9589 DOWNSTREAM CG9590 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14287649	3R_14287649_SNP [dm3] 3R_18461927_SNP [dm6]	C	A	1.011e^-4	0.588	INTRON fru
3R	14287651	3R_14287651_SNP [dm3] 3R_18461929_SNP [dm6]	G	A	1.011e^-4	0.588	INTRON fru
3L	438457	3L_438457_SNP [dm3] 3L_438457_SNP [dm6]	A	G	1.017e^-4	0.588	UPSTREAM klar INTRON klar
2L	17070425	2L_17070425_SNP [dm3] 2L_17070425_SNP [dm6]	T	C	1.020e^-4	0.588	INTERGENIC
3L	8585137	3L_8585137_SNP [dm3] 3L_8592037_SNP [dm6]	G	T	1.020e^-4	0.588	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9215617	2L_9215617_SNP [dm3] 2L_9215617_SNP [dm6]	G	T	1.022e^-4	0.588	INTRON tai
2R	20380083	2R_20380083_SNP [dm3] 2R_24492560_SNP [dm6]	G	T	1.026e^-4	0.588	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
3L	12509202	3L_12509202_SNP [dm3] 3L_12516102_SNP [dm6]	T	C	1.031e^-4	0.588	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1536695	3L_1536695_SNP [dm3] 3L_1536695_SNP [dm6]	A	G	1.032e^-4	0.588	UTR_5_PRIME CG12091 UPSTREAM CG7852	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	2195865	3R_2195865_SNP [dm3] 3R_6370143_SNP [dm6]	C	T	1.035e^-4	0.588	NON_SYNONYMOUS_CODING CG10286 DOWNSTREAM CG1041	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2210505	3R_2210505_SNP [dm3] 3R_6384783_SNP [dm6]	C	T	1.035e^-4	0.588	INTRON godzilla
3R	2238897	3R_2238897_SNP [dm3] 3R_6413175_SNP [dm6]	G	A	1.035e^-4	0.588	INTRON gpp
2L	17798351	2L_17798351_SNP [dm3] 2L_17798351_SNP [dm6]	A	G	1.036e^-4	0.588	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
X	21976791	X_21976791_SNP [dm3] X_22574955_SNP [dm6]	C	T	1.039e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21976804	X_21976804_SNP [dm3] X_22574968_SNP [dm6]	C	T	1.039e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16762226	2R_16762226_SNP [dm3] 2R_20874721_SNP [dm6]	G	A	1.044e^-4	0.588	UTR_5_PRIME Ipk1 INTRON Ipk1
2R	16762272	2R_16762272_SNP [dm3] 2R_20874767_SNP [dm6]	G	T	1.044e^-4	0.588	INTRON Ipk1
2R	16764756	2R_16764756_SNP [dm3] 2R_20877251_SNP [dm6]	C	A	1.044e^-4	0.588	SPLICE_SITE_REGION Ipk1 INTRON Ipk1
2R	15209259	2R_15209259_SNP [dm3] 2R_19321754_SNP [dm6]	G	T	1.047e^-4	0.588	INTRON Rgk1	TF binding site mE1_TFBS_inv
X	21985310	X_21985310_SNP [dm3] X_22583474_SNP [dm6]	T	C	1.053e^-4	0.588	DOWNSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3850703	2L_3850703_SNP [dm3] 2L_3850703_SNP [dm6]	A	T	1.058e^-4	0.588	INTERGENIC
3R	6229779	3R_6229779_SNP [dm3] 3R_10404057_SNP [dm6]	A	G	1.061e^-4	0.588	NON_SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad
2L	711925	2L_711925_SNP [dm3] 2L_711925_SNP [dm6]	T	C	1.061e^-4	0.588	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da
2R	3888073	2R_3888073_DEL [dm3] 2R_8000568_DEL [dm6]	GG	G	1.061e^-4	0.588	UTR_3_PRIME CG11191 DOWNSTREAM CG11191	TF binding site mE1_TFBS_chinmo
X	21982650	X_21982650_SNP [dm3] X_22580814_SNP [dm6]	G	T	1.070e^-4	0.591	INTERGENIC
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	1.076e^-4	0.592	INTRON fru
3R	18534771	3R_18534771_SNP [dm3] 3R_22709049_SNP [dm6]	G	A	1.088e^-4	0.597	SYNONYMOUS_CODING CG4907	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11934124	2L_11934124_SNP [dm3] 2L_11934124_SNP [dm6]	G	C	1.100e^-4	0.598	UPSTREAM Or33a INTERGENIC
2L	11934132	2L_11934132_SNP [dm3] 2L_11934132_SNP [dm6]	G	A	1.100e^-4	0.598	UPSTREAM Or33a INTERGENIC
2L	11934135	2L_11934135_SNP [dm3] 2L_11934135_SNP [dm6]	A	T	1.100e^-4	0.598	UPSTREAM Or33a INTERGENIC
3R	9687975	3R_9687975_SNP [dm3] 3R_13862253_SNP [dm6]	C	A	1.106e^-4	0.6	INTERGENIC
3R	3892336	3R_3892336_SNP [dm3] 3R_8066614_SNP [dm6]	G	C	1.113e^-4	0.601	INTRON mAChR-B
2L	4349838	2L_4349838_SNP [dm3] 2L_4349838_SNP [dm6]	A	G	1.114e^-4	0.601	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26458118	3R_26458118_SNP [dm3] 3R_30632396_SNP [dm6]	G	T	1.118e^-4	0.601	INTERGENIC
2L	17807433	2L_17807433_SNP [dm3] 2L_17807433_SNP [dm6]	A	T	1.124e^-4	0.603	INTRON CadN2
3L	6598833	3L_6598833_SNP [dm3] 3L_6605733_SNP [dm6]	A	G	1.128e^-4	0.603	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	1905447	3R_1905447_SNP [dm3] 3R_6079725_SNP [dm6]	C	G	1.135e^-4	0.604	INTERGENIC
X	18020891	X_18020891_DEL [dm3] X_18126858_DEL [dm6]	TATTGTGGTCCTGGAAAACC...	A	1.144e^-4	0.604	UTR_5_PRIME CG32553
2R	18880889	2R_18880889_SNP [dm3] 2R_22993366_SNP [dm6]	G	T	1.149e^-4	0.604	DOWNSTREAM CG9896 INTRON twi
3R	2174189	3R_2174189_SNP [dm3] 3R_6348467_SNP [dm6]	A	G	1.156e^-4	0.604	UPSTREAM Hr83 DOWNSTREAM CG18048 INTERGENIC
3R	2248059	3R_2248059_SNP [dm3] 3R_6422337_SNP [dm6]	G	A	1.156e^-4	0.604	INTRON gpp	TF binding site BDTNP1_TFBS_dl
3R	2061166	3R_2061166_SNP [dm3] 3R_6235444_SNP [dm6]	A	T	1.165e^-4	0.604	INTRON Osi6
3R	3832481	3R_3832481_SNP [dm3] 3R_8006759_SNP [dm6]	T	C	1.166e^-4	0.604	SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
2R	4414929	2R_4414929_SNP [dm3] 2R_8527424_SNP [dm6]	C	A	1.175e^-4	0.604	INTRON mtt
3R	1670315	3R_1670315_SNP [dm3] 3R_5844593_SNP [dm6]	T	A	1.176e^-4	0.604	NON_SYNONYMOUS_CODING CG1213
3R	1696146	3R_1696146_SNP [dm3] 3R_5870424_SNP [dm6]	G	C	1.176e^-4	0.604	INTRON CG34113
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	1.178e^-4	0.604	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15048284	3R_15048284_SNP [dm3] 3R_19222562_SNP [dm6]	A	G	1.180e^-4	0.604	INTRON vib
X	21982731	X_21982731_SNP [dm3] X_22580895_SNP [dm6]	A	T	1.182e^-4	0.604	INTERGENIC
3L	105174	3L_105174_SNP [dm3] 3L_105174_SNP [dm6]	C	T	1.184e^-4	0.604	INTERGENIC
3L	18057495	3L_18057495_SNP [dm3] 3L_18064395_SNP [dm6]	T	C	1.187e^-4	0.604	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10086264	3R_10086264_SNP [dm3] 3R_14260542_SNP [dm6]	G	C	1.189e^-4	0.604	SYNONYMOUS_CODING CG14840 UPSTREAM Aats-met DOWNSTREAM CG14841	TF binding site mE1_TFBS_chinmo
3R	26111922	3R_26111922_SNP [dm3] 3R_30286200_SNP [dm6]	T	G	1.193e^-4	0.604	INTRON hdc
2L	1407547	2L_1407547_SNP [dm3] 2L_1407547_SNP [dm6]	C	G	1.194e^-4	0.604	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20127471	3R_20127471_SNP [dm3] 3R_24301749_SNP [dm6]	A	T	1.197e^-4	0.604	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20127515	3R_20127515_INS [dm3] 3R_24301793_INS [dm6]	T	TCAGT	1.197e^-4	0.604	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20127518	3R_20127518_INS [dm3] 3R_24301796_INS [dm6]	C	CGTATTATTCAGTAATA...	1.197e^-4	0.604	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5392354	X_5392354_SNP [dm3] X_5498321_SNP [dm6]	A	T	1.211e^-4	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7840963	2R_7840963_SNP [dm3] 2R_11953458_SNP [dm6]	G	A	1.218e^-4	0.61	INTRON CG13188
2L	8398451	2L_8398451_DEL [dm3] 2L_8398451_DEL [dm6]	CAATAC	C	1.220e^-4	0.61	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	11934021	2L_11934021_SNP [dm3] 2L_11934021_SNP [dm6]	T	A	1.226e^-4	0.61	UPSTREAM Or33a INTERGENIC
2R	19104837	2R_19104837_SNP [dm3] 2R_23217314_SNP [dm6]	T	C	1.229e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14143187	3R_14143187_SNP [dm3] 3R_18317465_SNP [dm6]	G	T	1.229e^-4	0.61	NON_SYNONYMOUS_CODING CG31235
3R	23491102	3R_23491102_SNP [dm3] 3R_27665380_SNP [dm6]	G	T	1.236e^-4	0.61	SPLICE_SITE_REGION unc80 INTRON unc80	TF binding site mE1_TFBS_cad
3R	2222238	3R_2222238_SNP [dm3] 3R_6396516_SNP [dm6]	A	T	1.238e^-4	0.61	INTRON Dmtn
2R	8820522	2R_8820522_SNP [dm3] 2R_12933017_SNP [dm6]	G	A	1.243e^-4	0.61	NON_SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo
3L	14199249	3L_14199249_INS [dm3] 3L_14206149_INS [dm6]	GTGTAGGGT	ACAAGTTACACAC...	1.243e^-4	0.61	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15989963	3L_15989963_SNP [dm3] 3L_15996863_SNP [dm6]	T	C	1.254e^-4	0.614	INTRON CG5830
2L	11934229	2L_11934229_SNP [dm3] 2L_11934229_SNP [dm6]	G	T	1.267e^-4	0.619	UPSTREAM Or33a INTERGENIC
3L	1536907	3L_1536907_DEL [dm3] 3L_1536907_DEL [dm6]	GTGTTATTTT	G	1.272e^-4	0.619	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8224856	2L_8224856_SNP [dm3] 2L_8224856_SNP [dm6]	C	G	1.279e^-4	0.621	NON_SYNONYMOUS_CODING Pvr
2L	4102755	2L_4102755_SNP [dm3] 2L_4102755_SNP [dm6]	T	C	1.283e^-4	0.622	INTRON ed
2R	4414760	2R_4414760_SNP [dm3] 2R_8527255_SNP [dm6]	A	C	1.302e^-4	0.626	INTRON mtt
3R	2234513	3R_2234513_SNP [dm3] 3R_6408791_SNP [dm6]	C	T	1.303e^-4	0.626	DOWNSTREAM CR44017 INTRON gpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	18018879	X_18018879_SNP [dm3] X_18124846_SNP [dm6]	T	G	1.303e^-4	0.626	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2L	10247361	2L_10247361_SNP [dm3] 2L_10247361_SNP [dm6]	A	T	1.307e^-4	0.626	UPSTREAM chico DOWNSTREAM bsk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6257248	3R_6257248_SNP [dm3] 3R_10431526_SNP [dm6]	T	C	1.310e^-4	0.626	INTERGENIC
X	7506482	X_7506482_SNP [dm3] X_7612449_SNP [dm6]	A	G	1.319e^-4	0.629	INTRON ct	TF binding site mE1_TFBS_inv
3L	7497090	3L_7497090_SNP [dm3] 3L_7503990_SNP [dm6]	G	A	1.322e^-4	0.629	INTERGENIC
3L	896058	3L_896058_SNP [dm3] 3L_896058_SNP [dm6]	G	T	1.330e^-4	0.631	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
3R	23564443	3R_23564443_SNP [dm3] 3R_27738721_SNP [dm6]	T	C	1.351e^-4	0.639	INTRON Ets98B
2L	712093	2L_712093_SNP [dm3] 2L_712093_SNP [dm6]	G	C	1.355e^-4	0.64	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da
2R	15209062	2R_15209062_SNP [dm3] 2R_19321557_SNP [dm6]	C	G	1.362e^-4	0.64	INTRON Rgk1	TF binding site mE1_TFBS_inv
2L	11980007	2L_11980007_SNP [dm3] 2L_11980007_SNP [dm6]	C	T	1.362e^-4	0.64	INTERGENIC
3L	2732866	3L_2732866_DEL [dm3] 3L_2732866_DEL [dm6]	CAATCTACGAG...	C	1.368e^-4	0.641	INTRON Mrtf
X	8086288	X_8086288_SNP [dm3] X_8192255_SNP [dm6]	T	A	1.371e^-4	0.641	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	19021410	3R_19021410_SNP [dm3] 3R_23195688_SNP [dm6]	G	A	1.379e^-4	0.643	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4744630	2L_4744630_SNP [dm3] 2L_4744630_SNP [dm6]	T	C	1.390e^-4	0.645	INTRON CG15630
3L	12305245	3L_12305245_SNP [dm3] 3L_12312145_SNP [dm6]	G	A	1.392e^-4	0.645	DOWNSTREAM CG44355 INTERGENIC
2R	13380673	2R_13380673_SNP [dm3] 2R_17493168_SNP [dm6]	G	A	1.398e^-4	0.645	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13380674	2R_13380674_SNP [dm3] 2R_17493169_SNP [dm6]	T	A	1.398e^-4	0.645	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	18531658	3R_18531658_SNP [dm3] 3R_22705936_SNP [dm6]	G	A	1.400e^-4	0.645	SYNONYMOUS_CODING CG13842
3L	12507956	3L_12507956_SNP [dm3] 3L_12514856_SNP [dm6]	G	A	1.408e^-4	0.646	UPSTREAM tral & 1 other INTRON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10430786	3L_10430786_SNP [dm3] 3L_10437686_SNP [dm6]	T	C	1.412e^-4	0.646	INTERGENIC
2L	11934215	2L_11934215_SNP [dm3] 2L_11934215_SNP [dm6]	T	A	1.413e^-4	0.646	UPSTREAM Or33a INTERGENIC
2R	11872792	2R_11872792_SNP [dm3] 2R_15985287_SNP [dm6]	C	T	1.421e^-4	0.647	SYNONYMOUS_CODING Strn-Mlck
3L	16290957	3L_16290957_SNP [dm3] 3L_16297857_SNP [dm6]	T	G	1.422e^-4	0.647	INTERGENIC
2L	11295413	2L_11295413_SNP [dm3] 2L_11295413_SNP [dm6]	C	A	1.437e^-4	0.651	INTERGENIC
3R	2069151	3R_2069151_SNP [dm3] 3R_6243429_SNP [dm6]	G	A	1.440e^-4	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3594224	3R_3594224_SNP [dm3] 3R_7768502_SNP [dm6]	C	A	1.442e^-4	0.651	INTERGENIC
3R	2064544	3R_2064544_SNP [dm3] 3R_6238822_SNP [dm6]	C	G	1.452e^-4	0.651	INTERGENIC	transposable element FlyBase
3L	12194715	3L_12194715_SNP [dm3] 3L_12201615_SNP [dm6]	A	T	1.455e^-4	0.651	INTRON Adk1
3L	12503980	3L_12503980_SNP [dm3] 3L_12510880_SNP [dm6]	C	T	1.455e^-4	0.651	SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
3R	10849873	3R_10849873_SNP [dm3] 3R_15024151_SNP [dm6]	T	G	1.456e^-4	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27129571	3R_27129571_SNP [dm3] 3R_31303849_SNP [dm6]	T	C	1.459e^-4	0.651	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
X	7905788	X_7905788_SNP [dm3] X_8011755_SNP [dm6]	A	G	1.483e^-4	0.66	INTRON Tbh
3R	10810458	3R_10810458_SNP [dm3] 3R_14984736_SNP [dm6]	C	T	1.491e^-4	0.66	INTERGENIC
3L	3629245	3L_3629245_SNP [dm3] 3L_3629245_SNP [dm6]	A	T	1.492e^-4	0.66	INTRON dar1
2L	9648167	2L_9648167_SNP [dm3] 2L_9648167_SNP [dm6]	C	A	1.493e^-4	0.66	SYNONYMOUS_CODING Apoltp
3L	10446543	3L_10446543_SNP [dm3] 3L_10453443_SNP [dm6]	A	T	1.499e^-4	0.661	INTERGENIC
2L	18510730	2L_18510730_SNP [dm3] 2L_18510730_SNP [dm6]	G	T	1.504e^-4	0.661	INTRON CG10178
2R	14861531	2R_14861531_SNP [dm3] 2R_18974026_SNP [dm6]	T	C	1.507e^-4	0.661	NON_SYNONYMOUS_CODING Topors	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5381702	2L_5381702_INS [dm3] 2L_5381702_INS [dm6]	A	AGCCA	1.509e^-4	0.661	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5381800	2L_5381800_SNP [dm3] 2L_5381800_SNP [dm6]	G	A	1.534e^-4	0.669	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18616622	2R_18616622_INS [dm3] 2R_22729117_INS [dm6]	T	TT	1.535e^-4	0.669	UTR_5_PRIME jbug INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14287661	3R_14287661_SNP [dm3] 3R_18461939_SNP [dm6]	A	C	1.539e^-4	0.669	INTRON fru
3R	24131797	3R_24131797_SNP [dm3] 3R_28306075_SNP [dm6]	A	G	1.552e^-4	0.669	INTERGENIC
3L	3537485	3L_3537485_SNP [dm3] 3L_3537485_SNP [dm6]	T	C	1.557e^-4	0.669	INTRON Eip63E
3R	25620655	3R_25620655_SNP [dm3] 3R_29794933_SNP [dm6]	A	G	1.560e^-4	0.669	SYNONYMOUS_CODING sro DOWNSTREAM kay & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14287655	3R_14287655_INS [dm3] 3R_18461933_INS [dm6]	A	ATATAG	1.563e^-4	0.669	INTRON fru
3R	26074320	3R_26074320_SNP [dm3] 3R_30248598_SNP [dm6]	G	A	1.571e^-4	0.669	UPSTREAM tRNA:CR31383 & 1 other DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6610568	2L_6610568_SNP [dm3] 2L_6610568_SNP [dm6]	A	G	1.573e^-4	0.669	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	13117378	2L_13117378_SNP [dm3] 2L_13117378_SNP [dm6]	T	A	1.575e^-4	0.669	INTERGENIC
3L	3567283	3L_3567283_SNP [dm3] 3L_3567283_SNP [dm6]	A	C	1.580e^-4	0.669	INTRON Eip63E
3L	10431798	3L_10431798_SNP [dm3] 3L_10438698_SNP [dm6]	T	G	1.582e^-4	0.669	INTERGENIC
3R	18533053	3R_18533053_SNP [dm3] 3R_22707331_SNP [dm6]	C	T	1.584e^-4	0.669	UPSTREAM CG13842 DOWNSTREAM CG4907 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	1.584e^-4	0.669	INTRON ss	regulatory region REDfly_CRMs
3L	18823274	3L_18823274_SNP [dm3] 3L_18830174_SNP [dm6]	G	A	1.585e^-4	0.669	INTRON Indy	TF binding site mE1_TFBS_inv
3L	7459384	3L_7459384_SNP [dm3] 3L_7466284_SNP [dm6]	G	A	1.591e^-4	0.669	UTR_5_PRIME CG42661 & 1 other UTR_3_PRIME CG42660 UPSTREAM Tsp66A
2L	10527805	2L_10527805_SNP [dm3] 2L_10527805_SNP [dm6]	A	T	1.593e^-4	0.669	STOP_GAINED Lip4	TF binding site BDTNP1_TFBS_dl
3R	7739054	3R_7739054_SNP [dm3] 3R_11913332_SNP [dm6]	G	T	1.596e^-4	0.669	INTRON Cad87A
3L	14247437	3L_14247437_SNP [dm3] 3L_14254337_SNP [dm6]	T	C	1.597e^-4	0.669	INTERGENIC
2L	11936618	2L_11936618_SNP [dm3] 2L_11936618_SNP [dm6]	T	C	1.602e^-4	0.67	SYNONYMOUS_CODING Or33b DOWNSTREAM Or33a
3L	7403072	3L_7403072_SNP [dm3] 3L_7409972_SNP [dm6]	G	T	1.607e^-4	0.67	UPSTREAM CR44525 INTERGENIC
2R	17382411	2R_17382411_SNP [dm3] 2R_21494906_SNP [dm6]	G	A	1.621e^-4	0.675	INTRON Fkbp14
3R	2074661	3R_2074661_SNP [dm3] 3R_6248939_SNP [dm6]	G	T	1.626e^-4	0.675	UPSTREAM Osi7 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1537126	3L_1537126_SNP [dm3] 3L_1537126_SNP [dm6]	A	T	1.635e^-4	0.676	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21942729	X_21942729_SNP [dm3] X_22540893_SNP [dm6]	T	C	1.637e^-4	0.676	SPLICE_SITE_REGION CG17600 UPSTREAM CG17598 INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11487174	3L_11487174_SNP [dm3] 3L_11494074_SNP [dm6]	C	A	1.640e^-4	0.676	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11934280	2L_11934280_SNP [dm3] 2L_11934280_SNP [dm6]	G	T	1.647e^-4	0.676	UPSTREAM Or33a INTERGENIC
3R	25460307	3R_25460307_SNP [dm3] 3R_29634585_SNP [dm6]	T	C	1.655e^-4	0.676	INTRON Dop1R2
3L	19097873	3L_19097873_SNP [dm3] 3L_19104773_SNP [dm6]	A	T	1.658e^-4	0.676	DOWNSTREAM CG14082 INTERGENIC
3R	20127222	3R_20127222_SNP [dm3] 3R_24301500_SNP [dm6]	A	T	1.661e^-4	0.676	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16666569	3L_16666569_SNP [dm3] 3L_16673469_SNP [dm6]	T	C	1.665e^-4	0.676	UPSTREAM CG13032 INTRON zetaCOP	regulatory region REDfly_CRMs
X	7612548	X_7612548_SNP [dm3] X_7718515_SNP [dm6]	A	C	1.667e^-4	0.676	UPSTREAM CG15478 INTERGENIC
3L	2681204	3L_2681204_SNP [dm3] 3L_2681204_SNP [dm6]	T	C	1.667e^-4	0.676	INTRON Fife
2L	20584927	2L_20584927_SNP [dm3] 2L_20584927_SNP [dm6]	C	G	1.674e^-4	0.676	INTRON CR44909
3R	1715071	3R_1715071_SNP [dm3] 3R_5889349_SNP [dm6]	T	C	1.678e^-4	0.676	INTRON CG34113
2R	8435190	2R_8435190_SNP [dm3] 2R_12547685_SNP [dm6]	T	A	1.682e^-4	0.676	INTRON fra
3L	16668673	3L_16668673_SNP [dm3] 3L_16675573_SNP [dm6]	C	T	1.683e^-4	0.676	DOWNSTREAM Lasp INTRON CG13032	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3882513	2R_3882513_SNP [dm3] 2R_7995008_SNP [dm6]	T	C	1.684e^-4	0.676	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC	TF binding site mE1_TFBS_cad
3L	2682405	3L_2682405_SNP [dm3] 3L_2682405_SNP [dm6]	G	A	1.690e^-4	0.677	NON_SYNONYMOUS_CODING Fife
3L	6713875	3L_6713875_SNP [dm3] 3L_6720775_SNP [dm6]	G	T	1.693e^-4	0.677	INTERGENIC
2R	14400670	2R_14400670_SNP [dm3] 2R_18513165_SNP [dm6]	A	C	1.709e^-4	0.678	INTERGENIC
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	1.710e^-4	0.678	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
3R	7232378	3R_7232378_SNP [dm3] 3R_11406656_SNP [dm6]	T	A	1.711e^-4	0.678	UTR_3_PRIME pros
3R	7247202	3R_7247202_SNP [dm3] 3R_11421480_SNP [dm6]	C	T	1.711e^-4	0.678	SYNONYMOUS_CODING ninaG UPSTREAM CG5270	TF binding site mE1_TFBS_cad
3R	4442768	3R_4442768_SNP [dm3] 3R_8617046_SNP [dm6]	C	T	1.715e^-4	0.678	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3R	25490586	3R_25490586_SNP [dm3] 3R_29664864_SNP [dm6]	G	A	1.716e^-4	0.678	NON_SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
2L	4239866	2L_4239866_SNP [dm3] 2L_4239866_SNP [dm6]	A	G	1.721e^-4	0.678	DOWNSTREAM CR45720 INTERGENIC
2R	18200831	2R_18200831_SNP [dm3] 2R_22313326_SNP [dm6]	T	G	1.736e^-4	0.678	INTRON CR44758
2L	751683	2L_751683_SNP [dm3] 2L_751683_SNP [dm6]	G	C	1.739e^-4	0.678	INTRON GABA-B-R3
2L	4161294	2L_4161294_SNP [dm3] 2L_4161294_SNP [dm6]	C	T	1.749e^-4	0.678	INTERGENIC
2L	683422	2L_683422_SNP [dm3] 2L_683422_SNP [dm6]	G	A	1.750e^-4	0.678	INTRON ds
2L	683433	2L_683433_SNP [dm3] 2L_683433_SNP [dm6]	C	T	1.750e^-4	0.678	INTRON ds
2L	8433905	2L_8433905_DEL [dm3] 2L_8433905_DEL [dm6]	AAATATGCAA	A	1.753e^-4	0.678	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8433919	2L_8433919_DEL [dm3] 2L_8433919_DEL [dm6]	AGCGATTAT	A	1.753e^-4	0.678	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16666710	3L_16666710_SNP [dm3] 3L_16673610_SNP [dm6]	A	T	1.753e^-4	0.678	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	16668713	3L_16668713_SNP [dm3] 3L_16675613_SNP [dm6]	G	T	1.753e^-4	0.678	SYNONYMOUS_CODING CG13032 DOWNSTREAM Lasp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4203352	X_4203352_SNP [dm3] X_4309319_SNP [dm6]	T	G	1.757e^-4	0.678	INTERGENIC
2L	1510210	2L_1510210_SNP [dm3] 2L_1510210_SNP [dm6]	T	C	1.774e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3745212	3L_3745212_SNP [dm3] 3L_3745212_SNP [dm6]	C	T	1.783e^-4	0.682	INTRON CG32264
3L	1548010	3L_1548010_SNP [dm3] 3L_1548010_SNP [dm6]	T	C	1.788e^-4	0.682	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11313689	2L_11313689_SNP [dm3] 2L_11313689_SNP [dm6]	G	A	1.790e^-4	0.682	INTERGENIC
3R	19907924	3R_19907924_SNP [dm3] 3R_24082202_SNP [dm6]	T	A	1.796e^-4	0.682	INTRON 4EHP
3R	8364374	3R_8364374_SNP [dm3] 3R_12538652_SNP [dm6]	A	G	1.798e^-4	0.682	INTRON Octbeta3R
3R	12952458	3R_12952458_SNP [dm3] 3R_17126736_SNP [dm6]	C	T	1.799e^-4	0.682	SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
3L	2732665	3L_2732665_SNP [dm3] 3L_2732665_SNP [dm6]	A	G	1.807e^-4	0.682	INTRON Mrtf
X	18018246	X_18018246_SNP [dm3] X_18124213_SNP [dm6]	T	G	1.808e^-4	0.682	UPSTREAM mir-969 DOWNSTREAM CG32553 INTERGENIC
X	18019227	X_18019227_SNP [dm3] X_18125194_SNP [dm6]	A	T	1.808e^-4	0.682	SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
2R	7796751	2R_7796751_SNP [dm3] 2R_11909246_SNP [dm6]	C	T	1.810e^-4	0.682	INTRON CG13183
3R	16005337	3R_16005337_INS [dm3] 3R_20179615_INS [dm6]	A	ATGTA	1.812e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	7771817	2L_7771817_SNP [dm3] 2L_7771817_SNP [dm6]	A	G	1.818e^-4	0.683	INTRON CG7191	TF binding site BDTNP1_TFBS_twi
3L	9908607	3L_9908607_SNP [dm3] 3L_9915507_SNP [dm6]	A	T	1.820e^-4	0.683	INTRON CG34356
3R	2827918	3R_2827918_SNP [dm3] 3R_7002196_SNP [dm6]	G	T	1.825e^-4	0.683	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9864719	3L_9864719_SNP [dm3] 3L_9871619_SNP [dm6]	A	G	1.841e^-4	0.683	DOWNSTREAM CG8108 INTERGENIC
3L	15790682	3L_15790682_DEL [dm3] 3L_15797582_DEL [dm6]	TA	T	1.841e^-4	0.683	INTERGENIC
3R	15395299	3R_15395299_SNP [dm3] 3R_19569577_SNP [dm6]	T	G	1.842e^-4	0.683	START_GAINED Dys UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	18019438	X_18019438_SNP [dm3] X_18125405_SNP [dm6]	T	C	1.847e^-4	0.683	NON_SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
3L	8882231	3L_8882231_SNP [dm3] 3L_8889131_SNP [dm6]	T	C	1.847e^-4	0.683	UPSTREAM CG43169 INTRON dally
3L	5980518	3L_5980518_SNP [dm3] 3L_5987418_SNP [dm6]	C	T	1.847e^-4	0.683	INTERGENIC
X	2566221	X_2566221_SNP [dm3] X_2672188_SNP [dm6]	C	T	1.855e^-4	0.685	INTRON sgg
2L	13117376	2L_13117376_SNP [dm3] 2L_13117376_SNP [dm6]	A	T	1.859e^-4	0.685	INTERGENIC
2L	11022929	2L_11022929_SNP [dm3] 2L_11022929_SNP [dm6]	A	C	1.878e^-4	0.688	INTRON Samuel
2L	17859494	2L_17859494_SNP [dm3] 2L_17859494_SNP [dm6]	G	A	1.891e^-4	0.688	INTRON CadN2
3L	10431913	3L_10431913_SNP [dm3] 3L_10438813_SNP [dm6]	T	G	1.894e^-4	0.688	INTERGENIC
2R	18358299	2R_18358299_SNP [dm3] 2R_22470794_SNP [dm6]	T	C	1.894e^-4	0.688	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
3L	8323379	3L_8323379_SNP [dm3] 3L_8330279_SNP [dm6]	T	A	1.895e^-4	0.688	DOWNSTREAM CG34462 INTERGENIC
3R	19833103	3R_19833103_SNP [dm3] 3R_24007381_SNP [dm6]	C	T	1.896e^-4	0.688	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18883355	2R_18883355_SNP [dm3] 2R_22995832_SNP [dm6]	G	C	1.898e^-4	0.688	INTRON twi & 1 other
3L	12292260	3L_12292260_SNP [dm3] 3L_12299160_SNP [dm6]	A	G	1.904e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6231315	3R_6231315_SNP [dm3] 3R_10405593_SNP [dm6]	A	G	1.905e^-4	0.688	SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8098974	2L_8098974_SNP [dm3] 2L_8098974_SNP [dm6]	T	G	1.910e^-4	0.688	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	3456866	X_3456866_SNP [dm3] X_3562833_SNP [dm6]	G	T	1.913e^-4	0.688	INTRON CG32791 & 1 other
2L	15543009	2L_15543009_SNP [dm3] 2L_15543009_SNP [dm6]	C	G	1.917e^-4	0.688	INTERGENIC
2R	19104825	2R_19104825_SNP [dm3] 2R_23217302_SNP [dm6]	A	G	1.918e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4357626	3L_4357626_SNP [dm3] 3L_4357626_SNP [dm6]	A	G	1.919e^-4	0.688	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19106397	2R_19106397_SNP [dm3] 2R_23218874_SNP [dm6]	T	C	1.928e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20031638	2R_20031638_SNP [dm3] 2R_24144115_SNP [dm6]	G	A	1.935e^-4	0.688	INTRON Dat
2R	20031640	2R_20031640_SNP [dm3] 2R_24144117_SNP [dm6]	C	G	1.935e^-4	0.688	INTRON Dat
X	4290170	X_4290170_SNP [dm3] X_4396137_SNP [dm6]	G	A	1.937e^-4	0.688	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14831475	3R_14831475_SNP [dm3] 3R_19005753_SNP [dm6]	A	C	1.949e^-4	0.688	INTRON gukh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	716032	2L_716032_SNP [dm3] 2L_716032_SNP [dm6]	A	T	1.950e^-4	0.688	DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	9772605	3R_9772605_SNP [dm3] 3R_13946883_SNP [dm6]	G	A	1.960e^-4	0.688	INTERGENIC
3R	1952908	3R_1952908_SNP [dm3] 3R_6127186_SNP [dm6]	G	A	1.961e^-4	0.688	UPSTREAM CR43486 DOWNSTREAM CR43487 INTERGENIC
3L	441715	3L_441715_SNP [dm3] 3L_441715_SNP [dm6]	G	A	1.961e^-4	0.688	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
3L	16665315	3L_16665315_DEL [dm3] 3L_16672215_DEL [dm6]	CTTGT	C	1.961e^-4	0.688	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	16665323	3L_16665323_SNP [dm3] 3L_16672223_SNP [dm6]	C	T	1.961e^-4	0.688	UTR_3_PRIME zetaCOP INTRON zetaCOP
3R	14006419	3R_14006419_SNP [dm3] 3R_18180697_SNP [dm6]	T	C	1.972e^-4	0.69	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
2L	13433604	2L_13433604_SNP [dm3] 2L_13433604_SNP [dm6]	G	C	1.976e^-4	0.69	INTRON CG42784
2R	15209122	2R_15209122_SNP [dm3] 2R_19321617_SNP [dm6]	T	C	1.978e^-4	0.69	INTRON Rgk1	TF binding site mE1_TFBS_inv
3L	14247445	3L_14247445_SNP [dm3] 3L_14254345_SNP [dm6]	G	A	1.979e^-4	0.69	INTERGENIC
3R	1719197	3R_1719197_DEL [dm3] 3R_5893475_DEL [dm6]	AA	A	1.992e^-4	0.691	INTRON CG34113
2R	8636903	2R_8636903_SNP [dm3] 2R_12749398_SNP [dm6]	T	C	1.997e^-4	0.691	SYNONYMOUS_CODING CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25264539	3R_25264539_SNP [dm3] 3R_29438817_SNP [dm6]	T	A	1.999e^-4	0.691	INTRON Ptp99A
3L	9953347	3L_9953347_SNP [dm3] 3L_9960247_SNP [dm6]	A	T	2.001e^-4	0.691	INTRON CG34356
3L	11504300	3L_11504300_SNP [dm3] 3L_11511200_SNP [dm6]	T	C	2.012e^-4	0.691	UPSTREAM CG33272 DOWNSTREAM Sgs7 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16218577	2L_16218577_SNP [dm3] 2L_16218577_SNP [dm6]	C	A	2.014e^-4	0.691	INTERGENIC
2R	17376433	2R_17376433_SNP [dm3] 2R_21488928_SNP [dm6]	T	A	2.019e^-4	0.691	INTRON Fkbp14
3L	12288741	3L_12288741_MNP [dm3] 3L_12295641_MNP [dm6]	GAGA	ACAT	2.022e^-4	0.691	INTRON CG4328
2R	13385678	2R_13385678_SNP [dm3] 2R_17498173_SNP [dm6]	G	A	2.027e^-4	0.691	INTERGENIC
2L	20331677	2L_20331677_SNP [dm3] 2L_20331677_SNP [dm6]	A	G	2.038e^-4	0.691	INTRON spir
2R	20019782	2R_20019782_SNP [dm3] 2R_24132259_SNP [dm6]	C	A	2.048e^-4	0.691	UPSTREAM tamo INTRON tamo
3L	989005	3L_989005_SNP [dm3] 3L_989005_SNP [dm6]	T	C	2.057e^-4	0.691	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	9647513	2L_9647513_SNP [dm3] 2L_9647513_SNP [dm6]	G	A	2.061e^-4	0.691	SYNONYMOUS_CODING Apoltp
2R	20031643	2R_20031643_SNP [dm3] 2R_24144120_SNP [dm6]	T	G	2.065e^-4	0.691	INTRON Dat
3L	6111608	3L_6111608_SNP [dm3] 3L_6118508_SNP [dm6]	A	C	2.068e^-4	0.691	INTRON Ets65A
3L	16666709	3L_16666709_SNP [dm3] 3L_16673609_SNP [dm6]	G	T	2.069e^-4	0.691	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	11504815	3L_11504815_SNP [dm3] 3L_11511715_SNP [dm6]	C	A	2.071e^-4	0.691	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5321811	2R_5321811_SNP [dm3] 2R_9434306_SNP [dm6]	T	C	2.075e^-4	0.691	UTR_3_PRIME Pdk DOWNSTREAM ced-6 & 1 other INTRON Pdk
3L	20525143	3L_20525143_DEL [dm3] 3L_20532043_DEL [dm6]	CG	C	2.078e^-4	0.691	INTRON Rcd2
2L	20975954	2L_20975954_SNP [dm3] 2L_20975954_SNP [dm6]	G	A	2.080e^-4	0.691	INTRON CG42238
2L	4956953	2L_4956953_SNP [dm3] 2L_4956953_SNP [dm6]	C	T	2.085e^-4	0.691	SPLICE_SITE_REGION Marcal1 INTRON Marcal1
3R	19074857	3R_19074857_SNP [dm3] 3R_23249135_SNP [dm6]	A	C	2.086e^-4	0.691	UPSTREAM CG4467 DOWNSTREAM CG4449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10808602	3R_10808602_SNP [dm3] 3R_14982880_SNP [dm6]	C	T	2.090e^-4	0.691	INTERGENIC
2R	7405264	2R_7405264_SNP [dm3] 2R_11517759_SNP [dm6]	C	T	2.095e^-4	0.691	INTERGENIC
2L	17810211	2L_17810211_SNP [dm3] 2L_17810211_SNP [dm6]	A	G	2.095e^-4	0.691	INTRON CadN2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6750947	2L_6750947_SNP [dm3] 2L_6750947_SNP [dm6]	C	T	2.095e^-4	0.691	INTRON CG11221
3L	10447321	3L_10447321_SNP [dm3] 3L_10454221_SNP [dm6]	C	T	2.100e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10447866	3L_10447866_SNP [dm3] 3L_10454766_SNP [dm6]	C	T	2.100e^-4	0.691	INTERGENIC
2L	742778	2L_742778_SNP [dm3] 2L_742778_SNP [dm6]	T	C	2.106e^-4	0.691	UPSTREAM Eaat2 INTRON Eaat2
2R	5869820	2R_5869820_SNP [dm3] 2R_9982315_SNP [dm6]	A	T	2.112e^-4	0.691	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5869821	2R_5869821_SNP [dm3] 2R_9982316_SNP [dm6]	T	G	2.112e^-4	0.691	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20380068	2R_20380068_SNP [dm3] 2R_24492545_SNP [dm6]	G	A	2.115e^-4	0.691	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
3L	11458673	3L_11458673_SNP [dm3] 3L_11465573_SNP [dm6]	G	A	2.118e^-4	0.691	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9499723	3L_9499723_SNP [dm3] 3L_9506623_SNP [dm6]	T	C	2.129e^-4	0.691	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16686807	3R_16686807_SNP [dm3] 3R_20861085_SNP [dm6]	A	G	2.129e^-4	0.691	SYNONYMOUS_CODING CG3822
3R	24133559	3R_24133559_SNP [dm3] 3R_28307837_SNP [dm6]	C	T	2.146e^-4	0.691	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9647346	2L_9647346_SNP [dm3] 2L_9647346_SNP [dm6]	A	C	2.152e^-4	0.691	NON_SYNONYMOUS_CODING Apoltp
X	22058728	X_22058728_SNP [dm3] X_22656892_SNP [dm6]	A	T	2.154e^-4	0.691	UPSTREAM CR44997 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4734170	3L_4734170_SNP [dm3] 3L_4734170_SNP [dm6]	G	A	2.155e^-4	0.691	INTRON RhoGEF64C
2L	8739939	2L_8739939_SNP [dm3] 2L_8739939_SNP [dm6]	G	T	2.156e^-4	0.691	INTRON raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	8741769	2L_8741769_SNP [dm3] 2L_8741769_SNP [dm6]	A	G	2.156e^-4	0.691	INTERGENIC
2L	8741795	2L_8741795_SNP [dm3] 2L_8741795_SNP [dm6]	A	T	2.156e^-4	0.691	INTERGENIC
2R	19774928	2R_19774928_SNP [dm3] 2R_23887405_SNP [dm6]	T	C	2.161e^-4	0.691	INTRON CG5597
X	19351400	X_19351400_SNP [dm3] X_19457367_SNP [dm6]	A	G	2.163e^-4	0.691	INTRON kek5
3L	16741128	3L_16741128_SNP [dm3] 3L_16748028_SNP [dm6]	A	G	2.164e^-4	0.691	INTERGENIC
2L	682986	2L_682986_SNP [dm3] 2L_682986_SNP [dm6]	C	G	2.165e^-4	0.691	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	683336	2L_683336_SNP [dm3] 2L_683336_SNP [dm6]	C	T	2.165e^-4	0.691	INTRON ds
2L	711935	2L_711935_SNP [dm3] 2L_711935_SNP [dm6]	A	G	2.168e^-4	0.691	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da
2L	3718049	2L_3718049_SNP [dm3] 2L_3718049_SNP [dm6]	G	A	2.170e^-4	0.691	UPSTREAM Shaw & 1 other INTERGENIC
3L	15789611	3L_15789611_SNP [dm3] 3L_15796511_SNP [dm6]	A	C	2.170e^-4	0.691	INTERGENIC
3L	12173911	3L_12173911_SNP [dm3] 3L_12180811_SNP [dm6]	C	T	2.187e^-4	0.696	INTRON CAH2
3R	10849581	3R_10849581_SNP [dm3] 3R_15023859_SNP [dm6]	T	C	2.222e^-4	0.702	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13380636	2R_13380636_SNP [dm3] 2R_17493131_SNP [dm6]	T	C	2.224e^-4	0.702	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	2.224e^-4	0.702	INTERGENIC
3R	13480791	3R_13480791_SNP [dm3] 3R_17655069_SNP [dm6]	G	A	2.225e^-4	0.702	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	13480799	3R_13480799_SNP [dm3] 3R_17655077_SNP [dm6]	C	G	2.225e^-4	0.702	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	12018597	3R_12018597_SNP [dm3] 3R_16192875_SNP [dm6]	C	A	2.240e^-4	0.702	INTRON sra
2L	7887638	2L_7887638_SNP [dm3] 2L_7887638_SNP [dm6]	G	C	2.248e^-4	0.702	UPSTREAM CG7102 DOWNSTREAM Spn28Da INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16418690	2R_16418690_SNP [dm3] 2R_20531185_SNP [dm6]	C	A	2.249e^-4	0.702	UPSTREAM CR44651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14152659	3L_14152659_SNP [dm3] 3L_14159559_SNP [dm6]	T	G	2.253e^-4	0.702	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	974059	3L_974059_SNP [dm3] 3L_974059_SNP [dm6]	C	A	2.261e^-4	0.702	INTRON Glut1
X	11368594	X_11368594_SNP [dm3] X_11474561_SNP [dm6]	A	T	2.262e^-4	0.702	INTRON CG43155
2R	7959641	2R_7959641_SNP [dm3] 2R_12072136_SNP [dm6]	T	A	2.265e^-4	0.702	INTRON CG8888
2L	10148935	2L_10148935_SNP [dm3] 2L_10148935_SNP [dm6]	G	C	2.267e^-4	0.702	INTRON CG44153 & 1 other
X	18018694	X_18018694_SNP [dm3] X_18124661_SNP [dm6]	T	A	2.268e^-4	0.702	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
3L	16674389	3L_16674389_SNP [dm3] 3L_16681289_SNP [dm6]	G	A	2.282e^-4	0.702	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19220904	2L_19220904_SNP [dm3] 2L_19220904_SNP [dm6]	T	A	2.292e^-4	0.702	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25451604	3R_25451604_SNP [dm3] 3R_29625882_SNP [dm6]	G	A	2.292e^-4	0.702	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2816139	2L_2816139_SNP [dm3] 2L_2816139_SNP [dm6]	T	A	2.294e^-4	0.702	UTR_3_PRIME Duox UPSTREAM CG15400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	21973615	X_21973615_INS [dm3] X_22571779_INS [dm6]	C	CTGAACTGGCCAAAATAGAT...	2.297e^-4	0.702	INTERGENIC
X	21974502	X_21974502_SNP [dm3] X_22572666_SNP [dm6]	G	A	2.297e^-4	0.702	INTERGENIC
X	21981153	X_21981153_DEL [dm3] X_22579317_DEL [dm6]	TGAGT	T	2.297e^-4	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	683470	2L_683470_DEL [dm3] 2L_683470_DEL [dm6]	CA	C	2.305e^-4	0.702	INTRON ds
2L	683474	2L_683474_SNP [dm3] 2L_683474_SNP [dm6]	G	T	2.305e^-4	0.702	INTRON ds
2L	8372336	2L_8372336_SNP [dm3] 2L_8372336_SNP [dm6]	C	A	2.306e^-4	0.702	UPSTREAM CG17292 INTRON CG17292
3L	5281401	3L_5281401_SNP [dm3] 3L_5288301_SNP [dm6]	A	G	2.306e^-4	0.702	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11980011	2L_11980011_SNP [dm3] 2L_11980011_SNP [dm6]	C	T	2.312e^-4	0.702	INTERGENIC
3L	15994738	3L_15994738_SNP [dm3] 3L_16001638_SNP [dm6]	A	G	2.317e^-4	0.702	INTRON CG5830
2R	3883625	2R_3883625_SNP [dm3] 2R_7996120_SNP [dm6]	A	C	2.322e^-4	0.702	SYNONYMOUS_CODING Hey	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23158908	3R_23158908_SNP [dm3] 3R_27333186_SNP [dm6]	T	C	2.323e^-4	0.702	INTERGENIC
3L	12507289	3L_12507289_DEL [dm3] 3L_12514189_DEL [dm6]	GG	G	2.325e^-4	0.702	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9258456	2R_9258456_SNP [dm3] 2R_13370951_SNP [dm6]	A	G	2.327e^-4	0.702	INTERGENIC
2L	16794067	2L_16794067_SNP [dm3] 2L_16794067_SNP [dm6]	G	A	2.328e^-4	0.702	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	19655060	3R_19655060_SNP [dm3] 3R_23829338_SNP [dm6]	A	G	2.343e^-4	0.705	INTRON CG34355
3L	18057398	3L_18057398_SNP [dm3] 3L_18064298_SNP [dm6]	C	A	2.349e^-4	0.705	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3605590	2L_3605590_SNP [dm3] 2L_3605590_SNP [dm6]	G	A	2.351e^-4	0.705	SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	2699171	3R_2699171_SNP [dm3] 3R_6873449_SNP [dm6]	C	T	2.355e^-4	0.705	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	25627272	3R_25627272_SNP [dm3] 3R_29801550_SNP [dm6]	T	C	2.356e^-4	0.705	UTR_3_PRIME Ice DOWNSTREAM CG7834
3R	25286050	3R_25286050_SNP [dm3] 3R_29460328_SNP [dm6]	C	T	2.361e^-4	0.705	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1432126	2L_1432126_SNP [dm3] 2L_1432126_SNP [dm6]	T	A	2.384e^-4	0.709	UPSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
X	18018538	X_18018538_SNP [dm3] X_18124505_SNP [dm6]	G	A	2.386e^-4	0.709	DOWNSTREAM CG32553 & 1 other INTERGENIC
2R	9293163	2R_9293163_SNP [dm3] 2R_13405658_SNP [dm6]	G	T	2.387e^-4	0.709	INTERGENIC
X	19351356	X_19351356_SNP [dm3] X_19457323_SNP [dm6]	A	T	2.397e^-4	0.709	INTRON kek5
3L	16667156	3L_16667156_SNP [dm3] 3L_16674056_SNP [dm6]	A	T	2.400e^-4	0.709	UTR_5_PRIME CG13032 UPSTREAM zetaCOP	regulatory region REDfly_CRMs
3L	16670236	3L_16670236_SNP [dm3] 3L_16677136_SNP [dm6]	G	A	2.400e^-4	0.709	UTR_3_PRIME Lasp DOWNSTREAM CG13032 & 2 others
3L	16674247	3L_16674247_SNP [dm3] 3L_16681147_SNP [dm6]	C	A	2.400e^-4	0.709	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11185403	2L_11185403_SNP [dm3] 2L_11185403_SNP [dm6]	G	A	2.412e^-4	0.71	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd
2L	18510927	2L_18510927_SNP [dm3] 2L_18510927_SNP [dm6]	T	C	2.415e^-4	0.71	INTRON CG10178
3L	11542080	3L_11542080_SNP [dm3] 3L_11548980_SNP [dm6]	T	A	2.419e^-4	0.71	INTRON Mob2
2L	11917306	2L_11917306_SNP [dm3] 2L_11917306_SNP [dm6]	G	T	2.420e^-4	0.71	INTRON Pde1c
2L	1629197	2L_1629197_SNP [dm3] 2L_1629197_SNP [dm6]	G	A	2.424e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_inv
3R	7484092	3R_7484092_SNP [dm3] 3R_11658370_SNP [dm6]	C	T	2.436e^-4	0.71	INTRON CG42327	TF binding site mE1_TFBS_HSA
3R	13480775	3R_13480775_SNP [dm3] 3R_17655053_SNP [dm6]	T	G	2.439e^-4	0.71	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	18824147	3L_18824147_SNP [dm3] 3L_18831047_SNP [dm6]	A	C	2.440e^-4	0.71	INTRON Indy	TF binding site mE1_TFBS_cad
2L	2025794	2L_2025794_SNP [dm3] 2L_2025794_SNP [dm6]	A	T	2.444e^-4	0.71	INTRON CG4238
3L	903863	3L_903863_SNP [dm3] 3L_903863_SNP [dm6]	C	G	2.446e^-4	0.71	DOWNSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13423097	2L_13423097_SNP [dm3] 2L_13423097_SNP [dm6]	A	G	2.446e^-4	0.71	START_GAINED CG42784 UTR_5_PRIME CG42784
2L	17807633	2L_17807633_SNP [dm3] 2L_17807633_SNP [dm6]	G	A	2.461e^-4	0.712	INTRON CadN2
3L	17558836	3L_17558836_SNP [dm3] 3L_17565736_SNP [dm6]	G	T	2.476e^-4	0.712	DOWNSTREAM snoRNA:Me28S-A576 INTRON Eip74EF
2L	15178321	2L_15178321_SNP [dm3] 2L_15178321_SNP [dm6]	T	C	2.481e^-4	0.712	SPLICE_SITE_REGION CG4168 UTR_5_PRIME CG4168
2R	19775119	2R_19775119_SNP [dm3] 2R_23887596_SNP [dm6]	A	T	2.484e^-4	0.712	INTRON CG5597
2L	19220880	2L_19220880_SNP [dm3] 2L_19220880_SNP [dm6]	C	G	2.484e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7771976	2L_7771976_SNP [dm3] 2L_7771976_SNP [dm6]	C	T	2.494e^-4	0.712	INTRON CG7191	TF binding site BDTNP1_TFBS_twi
2L	8802754	2L_8802754_SNP [dm3] 2L_8802754_SNP [dm6]	A	C	2.497e^-4	0.712	INTERGENIC
3R	7440237	3R_7440237_SNP [dm3] 3R_11614515_SNP [dm6]	A	G	2.510e^-4	0.712	INTRON Jupiter	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
3R	15048116	3R_15048116_SNP [dm3] 3R_19222394_SNP [dm6]	T	C	2.511e^-4	0.712	INTRON vib
2L	10460566	2L_10460566_SNP [dm3] 2L_10460566_SNP [dm6]	G	T	2.517e^-4	0.712	INTRON LM408
3L	2732512	3L_2732512_SNP [dm3] 3L_2732512_SNP [dm6]	C	T	2.521e^-4	0.712	INTRON Mrtf
3R	10078012	3R_10078012_SNP [dm3] 3R_14252290_SNP [dm6]	T	G	2.525e^-4	0.712	INTRON Aats-met
3L	9504424	3L_9504424_SNP [dm3] 3L_9511324_SNP [dm6]	A	G	2.525e^-4	0.712	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTRON RpS9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	9504425	3L_9504425_SNP [dm3] 3L_9511325_SNP [dm6]	A	G	2.525e^-4	0.712	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTRON RpS9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	9504503	3L_9504503_SNP [dm3] 3L_9511403_SNP [dm6]	C	A	2.525e^-4	0.712	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTRON RpS9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	20568561	X_20568561_INS [dm3] X_20697534_INS [dm6]	C	CTAATGGTATAATTAGGTAT...	2.527e^-4	0.712	DOWNSTREAM run INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10148947	2L_10148947_SNP [dm3] 2L_10148947_SNP [dm6]	C	T	2.527e^-4	0.712	INTRON CG44153 & 1 other
2L	10148948	2L_10148948_SNP [dm3] 2L_10148948_SNP [dm6]	T	C	2.527e^-4	0.712	INTRON CG44153 & 1 other
2L	10148952	2L_10148952_SNP [dm3] 2L_10148952_SNP [dm6]	G	A	2.527e^-4	0.712	INTRON CG44153 & 1 other
3R	23515442	3R_23515442_SNP [dm3] 3R_27689720_SNP [dm6]	A	T	2.538e^-4	0.712	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	2.547e^-4	0.712	INTRON Ca-beta
2R	20028022	2R_20028022_SNP [dm3] 2R_24140499_SNP [dm6]	G	A	2.551e^-4	0.712	INTRON Dat
2R	20028633	2R_20028633_SNP [dm3] 2R_24141110_SNP [dm6]	T	C	2.551e^-4	0.712	INTRON Dat
2R	8435186	2R_8435186_SNP [dm3] 2R_12547681_SNP [dm6]	A	G	2.556e^-4	0.712	INTRON fra
X	13259685	X_13259685_SNP [dm3] X_13365652_SNP [dm6]	C	T	2.558e^-4	0.712	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17555389	3R_17555389_SNP [dm3] 3R_21729667_SNP [dm6]	T	C	2.561e^-4	0.712	EXON CR43096
2R	18889511	2R_18889511_SNP [dm3] 2R_23001988_SNP [dm6]	A	T	2.561e^-4	0.712	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7489505	3L_7489505_SNP [dm3] 3L_7496405_SNP [dm6]	G	C	2.567e^-4	0.712	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	7914190	2L_7914190_SNP [dm3] 2L_7914190_SNP [dm6]	T	G	2.570e^-4	0.712	INTRON Snoo
2L	1509860	2L_1509860_DEL [dm3] 2L_1509860_DEL [dm6]	TT	T	2.575e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	19655066	3R_19655066_SNP [dm3] 3R_23829344_SNP [dm6]	T	G	2.576e^-4	0.712	INTRON CG34355
3L	12173737	3L_12173737_DEL [dm3] 3L_12180637_DEL [dm6]	TACTAG	A	2.577e^-4	0.712	INTRON CAH2
2L	7884579	2L_7884579_SNP [dm3] 2L_7884579_SNP [dm6]	G	A	2.590e^-4	0.714	SPLICE_SITE_REGION CG7102 SYNONYMOUS_CODING CG7102 UPSTREAM CG34132 DOWNSTREAM SmE	TF binding site BDTNP1_TFBS_dl
3L	2626901	3L_2626901_SNP [dm3] 3L_2626901_SNP [dm6]	T	A	2.591e^-4	0.714	INTRON Pxn
3L	12288751	3L_12288751_SNP [dm3] 3L_12295651_SNP [dm6]	G	A	2.597e^-4	0.715	INTRON CG4328
2L	11608787	2L_11608787_SNP [dm3] 2L_11608787_SNP [dm6]	T	G	2.609e^-4	0.717	INTRON kek2
2R	17486612	2R_17486612_SNP [dm3] 2R_21599107_SNP [dm6]	A	C	2.620e^-4	0.719	INTERGENIC
3L	16663124	3L_16663124_SNP [dm3] 3L_16670024_SNP [dm6]	T	C	2.623e^-4	0.719	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4161297	2L_4161297_SNP [dm3] 2L_4161297_SNP [dm6]	A	G	2.628e^-4	0.719	INTERGENIC
3R	9495718	3R_9495718_SNP [dm3] 3R_13669996_SNP [dm6]	C	G	2.633e^-4	0.719	INTRON Task6	TF binding site mE1_TFBS_inv
X	4606678	X_4606678_SNP [dm3] X_4712645_SNP [dm6]	A	G	2.650e^-4	0.72	INTRON Proc-R
3L	5854619	3L_5854619_SNP [dm3] 3L_5861519_SNP [dm6]	A	G	2.660e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5854714	3L_5854714_SNP [dm3] 3L_5861614_SNP [dm6]	T	G	2.660e^-4	0.72	INTERGENIC
3L	5854779	3L_5854779_DEL [dm3] 3L_5861679_DEL [dm6]	TG	T	2.660e^-4	0.72	INTERGENIC
3L	5854794	3L_5854794_SNP [dm3] 3L_5861694_SNP [dm6]	A	G	2.660e^-4	0.72	INTERGENIC
3L	5859607	3L_5859607_SNP [dm3] 3L_5866507_SNP [dm6]	G	C	2.660e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7344351	3L_7344351_SNP [dm3] 3L_7351251_SNP [dm6]	C	T	2.664e^-4	0.72	INTRON qm
2L	7608422	2L_7608422_SNP [dm3] 2L_7608422_SNP [dm6]	T	C	2.670e^-4	0.721	UTR_5_PRIME CG6739 DOWNSTREAM Cyp4d21	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2449004	2L_2449004_SNP [dm3] 2L_2449004_SNP [dm6]	C	T	2.675e^-4	0.721	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16275980	2R_16275980_SNP [dm3] 2R_20388475_SNP [dm6]	T	A	2.680e^-4	0.722	INTERGENIC
2L	2939208	2L_2939208_SNP [dm3] 2L_2939208_SNP [dm6]	G	T	2.695e^-4	0.723	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11505477	3L_11505477_SNP [dm3] 3L_11512377_SNP [dm6]	T	A	2.695e^-4	0.723	NON_SYNONYMOUS_CODING Sgs3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10486695	3R_10486695_SNP [dm3] 3R_14660973_SNP [dm6]	C	T	2.701e^-4	0.723	UTR_3_PRIME Hexim DOWNSTREAM Rad17
3R	24134285	3R_24134285_SNP [dm3] 3R_28308563_SNP [dm6]	C	T	2.702e^-4	0.723	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8339854	X_8339854_SNP [dm3] X_8445821_SNP [dm6]	C	A	2.704e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1586924	3R_1586924_SNP [dm3] 3R_5761202_SNP [dm6]	G	A	2.708e^-4	0.723	UTR_3_PRIME CG2082 INTRON CG2082
2R	18257029	2R_18257029_SNP [dm3] 2R_22369524_SNP [dm6]	T	C	2.724e^-4	0.726	INTRON Liprin-gamma
2L	8433904	2L_8433904_SNP [dm3] 2L_8433904_SNP [dm6]	C	T	2.732e^-4	0.726	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4730566	2R_4730566_SNP [dm3] 2R_8843061_SNP [dm6]	C	A	2.733e^-4	0.726	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9253631	2R_9253631_SNP [dm3] 2R_13366126_SNP [dm6]	T	G	2.739e^-4	0.727	INTERGENIC
3L	8341266	3L_8341266_SNP [dm3] 3L_8348166_SNP [dm6]	T	C	2.744e^-4	0.727	INTRON GAPcenA	TF binding site mE1_TFBS_cad
2R	20380062	2R_20380062_SNP [dm3] 2R_24492539_SNP [dm6]	C	T	2.746e^-4	0.727	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
2L	14623612	2L_14623612_SNP [dm3] 2L_14623612_SNP [dm6]	G	T	2.752e^-4	0.727	INTRON osp
2R	15813606	2R_15813606_SNP [dm3] 2R_19926101_SNP [dm6]	T	G	2.766e^-4	0.728	UPSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	14287672	3R_14287672_SNP [dm3] 3R_18461950_SNP [dm6]	C	T	2.771e^-4	0.728	INTRON fru
3R	14287685	3R_14287685_SNP [dm3] 3R_18461963_SNP [dm6]	G	C	2.771e^-4	0.728	INTRON fru
2L	7884196	2L_7884196_SNP [dm3] 2L_7884196_SNP [dm6]	C	G	2.790e^-4	0.728	NON_SYNONYMOUS_CODING CG7102 DOWNSTREAM SmE
2L	7884264	2L_7884264_SNP [dm3] 2L_7884264_SNP [dm6]	G	A	2.790e^-4	0.728	SYNONYMOUS_CODING CG7102 DOWNSTREAM SmE
2L	7884573	2L_7884573_SNP [dm3] 2L_7884573_SNP [dm6]	C	T	2.790e^-4	0.728	SYNONYMOUS_CODING CG7102 UPSTREAM CG34132 DOWNSTREAM SmE	TF binding site BDTNP1_TFBS_dl
3L	5444814	3L_5444814_SNP [dm3] 3L_5451714_SNP [dm6]	C	T	2.805e^-4	0.728	INTERGENIC
2R	2971453	2R_2971453_SNP [dm3] 2R_7083948_SNP [dm6]	T	C	2.808e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20568556	X_20568556_INS [dm3] X_20697529_INS [dm6]	T	TTTTATTTATTTATTTATTT...	2.809e^-4	0.728	DOWNSTREAM run INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22553271	3R_22553271_SNP [dm3] 3R_26727549_SNP [dm6]	C	G	2.818e^-4	0.728	UTR_5_PRIME CG14246 UPSTREAM CG14246 DOWNSTREAM CG14244 INTRON CG14246
X	4690159	X_4690159_INS [dm3] X_4796126_INS [dm6]	AAA	GGTGTACGAGGTGT...	2.818e^-4	0.728	INTERGENIC
3L	14252563	3L_14252563_SNP [dm3] 3L_14259463_SNP [dm6]	C	T	2.828e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7921512	3L_7921512_INS [dm3] 3L_7928412_INS [dm6]	T	TCAAGT	2.830e^-4	0.728	INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15837395	3R_15837395_SNP [dm3] 3R_20011673_SNP [dm6]	A	G	2.841e^-4	0.728	UTR_3_PRIME MED25 DOWNSTREAM CG17190	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7276023	3L_7276023_SNP [dm3] 3L_7282923_SNP [dm6]	C	T	2.842e^-4	0.728	INTRON unc-13-4A
3R	14237782	3R_14237782_INS [dm3] 3R_18412060_INS [dm6]	G	GCGAA	2.843e^-4	0.728	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	10085352	2L_10085352_INS [dm3] 2L_10085352_INS [dm6]	G	GGG	2.843e^-4	0.728	INTRON CG44153
2L	683234	2L_683234_SNP [dm3] 2L_683234_SNP [dm6]	A	G	2.848e^-4	0.728	INTRON ds	TF binding site BDTNP1_TFBS_twi
3L	7486617	3L_7486617_SNP [dm3] 3L_7493517_SNP [dm6]	C	A	2.851e^-4	0.728	DOWNSTREAM Cyp4d8 & 1 other INTERGENIC
2L	17778907	2L_17778907_SNP [dm3] 2L_17778907_SNP [dm6]	G	A	2.860e^-4	0.728	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1186186	3L_1186186_SNP [dm3] 3L_1186186_SNP [dm6]	G	T	2.863e^-4	0.728	INTERGENIC
3R	18686709	3R_18686709_SNP [dm3] 3R_22860987_SNP [dm6]	G	A	2.865e^-4	0.728	INTERGENIC
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	2.865e^-4	0.728	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	18260214	2R_18260214_INS [dm3] 2R_22372709_INS [dm6]	A	ATGTATGTA	2.869e^-4	0.728	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14400116	2R_14400116_SNP [dm3] 2R_18512611_SNP [dm6]	T	C	2.875e^-4	0.728	INTERGENIC
3R	26111908	3R_26111908_SNP [dm3] 3R_30286186_SNP [dm6]	C	T	2.880e^-4	0.728	INTRON hdc
3R	18533231	3R_18533231_SNP [dm3] 3R_22707509_SNP [dm6]	G	A	2.888e^-4	0.728	UPSTREAM CG13842 DOWNSTREAM CG4907 INTERGENIC
2L	11195139	2L_11195139_SNP [dm3] 2L_11195139_SNP [dm6]	G	T	2.894e^-4	0.728	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
3L	20319042	3L_20319042_SNP [dm3] 3L_20325942_SNP [dm6]	G	A	2.895e^-4	0.728	INTERGENIC	transposable element FlyBase
2R	10852680	2R_10852680_SNP [dm3] 2R_14965175_SNP [dm6]	A	G	2.902e^-4	0.728	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	3865473	2R_3865473_SNP [dm3] 2R_7977968_SNP [dm6]	C	T	2.916e^-4	0.728	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17381922	2R_17381922_SNP [dm3] 2R_21494417_SNP [dm6]	T	A	2.925e^-4	0.728	INTRON Fkbp14
2R	20522966	2R_20522966_SNP [dm3] 2R_24635443_SNP [dm6]	A	T	2.929e^-4	0.728	INTRON CG13594
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	2.930e^-4	0.728	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	12288754	3L_12288754_SNP [dm3] 3L_12295654_SNP [dm6]	T	A	2.934e^-4	0.728	INTRON CG4328
3L	12288755	3L_12288755_SNP [dm3] 3L_12295655_SNP [dm6]	G	T	2.934e^-4	0.728	INTRON CG4328
2L	10477559	2L_10477559_SNP [dm3] 2L_10477559_SNP [dm6]	G	A	2.934e^-4	0.728	SYNONYMOUS_CODING RluA-2	TF binding site mE1_TFBS_ttk
X	18459666	X_18459666_SNP [dm3] X_18565633_SNP [dm6]	C	T	2.938e^-4	0.728	UPSTREAM tRNA:CR32546 & 1 other INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	829908	3L_829908_SNP [dm3] 3L_829908_SNP [dm6]	T	C	2.939e^-4	0.728	UPSTREAM CR45184 DOWNSTREAM snoRNA:Me5.8S-G74 & 1 other INTRON CG13900 & 1 other EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7686621	2R_7686621_SNP [dm3] 2R_11799116_SNP [dm6]	A	G	2.951e^-4	0.728	INTRON ths
3L	4168318	3L_4168318_DEL [dm3] 3L_4168318_DEL [dm6]	AAACAGATAGTA...	A	2.952e^-4	0.728	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	8048228	X_8048228_SNP [dm3] X_8154195_SNP [dm6]	T	C	2.957e^-4	0.728	SYNONYMOUS_CODING CG18262 DOWNSTREAM Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22398799	3R_22398799_SNP [dm3] 3R_26573077_SNP [dm6]	A	G	2.959e^-4	0.728	INTRON scrib
2R	13213177	2R_13213177_DEL [dm3] 2R_17325672_DEL [dm6]	TGTCTCACTCT...	T	2.963e^-4	0.728	INTRON mbl
3L	18823768	3L_18823768_SNP [dm3] 3L_18830668_SNP [dm6]	A	G	2.968e^-4	0.728	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5854842	3L_5854842_SNP [dm3] 3L_5861742_SNP [dm6]	A	T	2.969e^-4	0.728	INTERGENIC
2R	5626526	2R_5626526_DEL [dm3] 2R_9739021_DEL [dm6]	CTATATATATAT...	C	2.978e^-4	0.728	INTRON sqa
3R	6219429	3R_6219429_SNP [dm3] 3R_10393707_SNP [dm6]	C	T	2.979e^-4	0.728	INTRON cwo
2L	4384765	2L_4384765_SNP [dm3] 2L_4384765_SNP [dm6]	T	G	2.979e^-4	0.728	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15971318	3L_15971318_SNP [dm3] 3L_15978218_SNP [dm6]	A	G	2.984e^-4	0.728	SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
2L	15400253	2L_15400253_SNP [dm3] 2L_15400253_SNP [dm6]	G	A	2.986e^-4	0.728	UPSTREAM CR44860 EXON CR45374
3L	8758868	3L_8758868_SNP [dm3] 3L_8765768_SNP [dm6]	C	T	3.001e^-4	0.728	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	3.004e^-4	0.728	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7887797	2L_7887797_SNP [dm3] 2L_7887797_SNP [dm6]	G	T	3.007e^-4	0.728	SYNONYMOUS_CODING Spn28Da UPSTREAM CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	13383743	3L_13383743_SNP [dm3] 3L_13390643_SNP [dm6]	C	G	3.008e^-4	0.728	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	4400707	2L_4400707_SNP [dm3] 2L_4400707_SNP [dm6]	T	G	3.008e^-4	0.728	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
3L	4302420	3L_4302420_SNP [dm3] 3L_4302420_SNP [dm6]	A	T	3.009e^-4	0.728	INTRON dyl
2L	4745076	2L_4745076_SNP [dm3] 2L_4745076_SNP [dm6]	A	T	3.010e^-4	0.728	INTRON CG15630
2R	18889506	2R_18889506_SNP [dm3] 2R_23001983_SNP [dm6]	G	A	3.010e^-4	0.728	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16793694	2L_16793694_SNP [dm3] 2L_16793694_SNP [dm6]	T	C	3.018e^-4	0.728	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
X	21986359	X_21986359_SNP [dm3] X_22584523_SNP [dm6]	C	T	3.031e^-4	0.728	INTRON Cda4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16693885	2L_16693885_SNP [dm3] 2L_16693885_SNP [dm6]	G	T	3.034e^-4	0.728	INTRON grp
3L	5616798	3L_5616798_SNP [dm3] 3L_5623698_SNP [dm6]	A	G	3.039e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11238874	3L_11238874_SNP [dm3] 3L_11245774_SNP [dm6]	T	G	3.040e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13327727	2L_13327727_SNP [dm3] 2L_13327727_SNP [dm6]	C	T	3.046e^-4	0.728	INTRON CG43778
2L	9492563	2L_9492563_SNP [dm3] 2L_9492563_SNP [dm6]	T	A	3.046e^-4	0.728	INTRON Gdi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5574539	X_5574539_SNP [dm3] X_5680506_SNP [dm6]	C	A	3.052e^-4	0.728	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2045262	3R_2045262_SNP [dm3] 3R_6219540_SNP [dm6]	G	T	3.054e^-4	0.728	INTRON Osi4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2049711	3R_2049711_SNP [dm3] 3R_6223989_SNP [dm6]	C	T	3.054e^-4	0.728	INTERGENIC
X	20759437	X_20759437_SNP [dm3] X_20888410_SNP [dm6]	T	A	3.055e^-4	0.728	INTRON shakB
3R	1666152	3R_1666152_SNP [dm3] 3R_5840430_SNP [dm6]	C	A	3.062e^-4	0.728	UPSTREAM CG1213 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23158910	3R_23158910_SNP [dm3] 3R_27333188_SNP [dm6]	T	C	3.064e^-4	0.728	INTERGENIC
2L	4245053	2L_4245053_SNP [dm3] 2L_4245053_SNP [dm6]	C	T	3.071e^-4	0.728	INTERGENIC
2L	7913860	2L_7913860_SNP [dm3] 2L_7913860_SNP [dm6]	G	A	3.073e^-4	0.728	INTRON Snoo
3L	12734501	3L_12734501_SNP [dm3] 3L_12741401_SNP [dm6]	G	A	3.076e^-4	0.728	UTR_3_PRIME Ptp69D UPSTREAM CG32112
2L	4431301	2L_4431301_DEL [dm3] 2L_4431301_DEL [dm6]	GTTG	G	3.081e^-4	0.728	INTRON CG15431
2R	14204763	2R_14204763_INS [dm3] 2R_18317258_INS [dm6]	A	AA	3.090e^-4	0.728	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7887696	2L_7887696_DEL [dm3] 2L_7887696_DEL [dm6]	GAGACG	G	3.095e^-4	0.728	UTR_3_PRIME Spn28Da UPSTREAM CG7102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7887715	2L_7887715_DEL [dm3] 2L_7887715_DEL [dm6]	TGTATTCGCAAAAATTCACT...	T	3.095e^-4	0.728	UTR_3_PRIME Spn28Da UPSTREAM CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	14620250	2R_14620250_DEL [dm3] 2R_18732745_DEL [dm6]	AAACATTTCA	A	3.106e^-4	0.728	INTRON Hs3st-A
3L	19435598	3L_19435598_DEL [dm3] 3L_19442498_DEL [dm6]	ATGGTATTAATCAAGATATT...	A	3.111e^-4	0.728	INTRON CG33062
3R	13839409	3R_13839409_SNP [dm3] 3R_18013687_SNP [dm6]	A	T	3.111e^-4	0.728	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
2L	11296751	2L_11296751_SNP [dm3] 2L_11296751_SNP [dm6]	T	A	3.118e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	439515	3L_439515_SNP [dm3] 3L_439515_SNP [dm6]	G	A	3.125e^-4	0.728	INTRON klar
2L	2554643	2L_2554643_SNP [dm3] 2L_2554643_SNP [dm6]	T	A	3.127e^-4	0.728	INTERGENIC
3L	19376101	3L_19376101_SNP [dm3] 3L_19383001_SNP [dm6]	T	C	3.134e^-4	0.728	INTRON CG32206
3L	3650964	3L_3650964_SNP [dm3] 3L_3650964_SNP [dm6]	A	C	3.137e^-4	0.728	INTRON dar1
2L	3303653	2L_3303653_SNP [dm3] 2L_3303653_SNP [dm6]	A	T	3.140e^-4	0.728	UPSTREAM CG3277 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11854337	3L_11854337_SNP [dm3] 3L_11861237_SNP [dm6]	G	A	3.147e^-4	0.728	INTRON CG44837
3R	2089302	3R_2089302_SNP [dm3] 3R_6263580_SNP [dm6]	G	A	3.150e^-4	0.728	UPSTREAM Osi10 INTERGENIC
3L	14199306	3L_14199306_SNP [dm3] 3L_14206206_SNP [dm6]	G	A	3.156e^-4	0.728	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14199317	3L_14199317_SNP [dm3] 3L_14206217_SNP [dm6]	A	T	3.156e^-4	0.728	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16670731	3L_16670731_SNP [dm3] 3L_16677631_SNP [dm6]	A	T	3.161e^-4	0.728	UTR_3_PRIME Lasp & 1 other
2L	17778904	2L_17778904_SNP [dm3] 2L_17778904_SNP [dm6]	A	G	3.164e^-4	0.728	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12339161	3L_12339161_SNP [dm3] 3L_12346061_SNP [dm6]	C	T	3.168e^-4	0.728	INTRON CrzR
3L	1491978	3L_1491978_SNP [dm3] 3L_1491978_SNP [dm6]	C	T	3.181e^-4	0.728	SPLICE_SITE_REGION CG12084 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	3.182e^-4	0.728	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10405907	2R_10405907_SNP [dm3] 2R_14518402_SNP [dm6]	G	A	3.183e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3279625	2L_3279625_SNP [dm3] 2L_3279625_SNP [dm6]	T	C	3.186e^-4	0.728	UPSTREAM CG3332 INTRON CG3332
3L	10125117	3L_10125117_SNP [dm3] 3L_10132017_SNP [dm6]	G	A	3.187e^-4	0.728	INTRON dpr6
3L	12858904	3L_12858904_SNP [dm3] 3L_12865804_SNP [dm6]	A	T	3.189e^-4	0.728	INTERGENIC
2L	711938	2L_711938_SNP [dm3] 2L_711938_SNP [dm6]	T	C	3.189e^-4	0.728	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da
2L	20011895	2L_20011895_SNP [dm3] 2L_20011895_SNP [dm6]	T	C	3.189e^-4	0.728	INTRON CG43861
2R	8202531	2R_8202531_SNP [dm3] 2R_12315026_SNP [dm6]	C	A	3.190e^-4	0.728	SPLICE_SITE_REGION CG30046 INTRON CG30046
X	11368549	X_11368549_SNP [dm3] X_11474516_SNP [dm6]	T	C	3.193e^-4	0.728	INTRON CG43155
X	11368554	X_11368554_SNP [dm3] X_11474521_SNP [dm6]	A	G	3.193e^-4	0.728	INTRON CG43155
3L	16670741	3L_16670741_SNP [dm3] 3L_16677641_SNP [dm6]	A	G	3.193e^-4	0.728	UTR_3_PRIME Lasp & 1 other
X	21986450	X_21986450_SNP [dm3] X_22584614_SNP [dm6]	T	A	3.194e^-4	0.728	INTRON Cda4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21986453	X_21986453_SNP [dm3] X_22584617_SNP [dm6]	G	A	3.194e^-4	0.728	INTRON Cda4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21986682	X_21986682_SNP [dm3] X_22584846_SNP [dm6]	C	A	3.194e^-4	0.728	INTRON Cda4	TF binding site BDTNP1_TFBS_sna
X	21987067	X_21987067_SNP [dm3] X_22585231_SNP [dm6]	C	T	3.194e^-4	0.728	INTRON Cda4
2L	4807215	2L_4807215_SNP [dm3] 2L_4807215_SNP [dm6]	G	A	3.213e^-4	0.728	INTERGENIC
3L	902610	3L_902610_SNP [dm3] 3L_902610_SNP [dm6]	A	T	3.216e^-4	0.728	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	11293689	2L_11293689_SNP [dm3] 2L_11293689_SNP [dm6]	C	A	3.220e^-4	0.728	INTERGENIC
2L	8360566	2L_8360566_SNP [dm3] 2L_8360566_SNP [dm6]	C	T	3.220e^-4	0.728	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	848448	2L_848448_SNP [dm3] 2L_848448_SNP [dm6]	A	G	3.221e^-4	0.728	INTRON drongo	TF binding site mE1_TFBS_sens
3L	10131449	3L_10131449_SNP [dm3] 3L_10138349_SNP [dm6]	C	T	3.223e^-4	0.728	INTRON dpr6
X	5447943	X_5447943_SNP [dm3] X_5553910_SNP [dm6]	C	T	3.223e^-4	0.728	INTRON Vsx2
X	5447948	X_5447948_SNP [dm3] X_5553915_SNP [dm6]	C	T	3.223e^-4	0.728	INTRON Vsx2
2R	7796768	2R_7796768_SNP [dm3] 2R_11909263_SNP [dm6]	C	T	3.224e^-4	0.728	INTRON CG13183
3R	2038935	3R_2038935_SNP [dm3] 3R_6213213_SNP [dm6]	C	T	3.229e^-4	0.728	SYNONYMOUS_CODING Osi2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	3.240e^-4	0.728	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	683235	2L_683235_SNP [dm3] 2L_683235_SNP [dm6]	C	A	3.241e^-4	0.728	INTRON ds	TF binding site BDTNP1_TFBS_twi
2R	11472294	2R_11472294_SNP [dm3] 2R_15584789_SNP [dm6]	A	C	3.255e^-4	0.728	INTERGENIC
3L	1536902	3L_1536902_SNP [dm3] 3L_1536902_SNP [dm6]	T	C	3.256e^-4	0.728	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1536960	3L_1536960_SNP [dm3] 3L_1536960_SNP [dm6]	A	T	3.256e^-4	0.728	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1536969	3L_1536969_SNP [dm3] 3L_1536969_SNP [dm6]	G	T	3.256e^-4	0.728	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1536978	3L_1536978_SNP [dm3] 3L_1536978_SNP [dm6]	T	C	3.256e^-4	0.728	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10433005	3L_10433005_SNP [dm3] 3L_10439905_SNP [dm6]	T	G	3.266e^-4	0.73	INTERGENIC
2L	7885474	2L_7885474_SNP [dm3] 2L_7885474_SNP [dm6]	C	T	3.271e^-4	0.73	UPSTREAM CG34132 & 1 other INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	12617116	X_12617116_INS [dm3] X_12723083_INS [dm6]	T	GATTTTGCGTAGGTTACAAT...	3.290e^-4	0.732	INTRON Smr & 1 other
2L	10487588	2L_10487588_SNP [dm3] 2L_10487588_SNP [dm6]	T	C	3.291e^-4	0.732	INTRON CG7456	TF binding site mE1_TFBS_inv
2R	12106209	2R_12106209_SNP [dm3] 2R_16218704_SNP [dm6]	T	C	3.296e^-4	0.732	UPSTREAM tRNA:CR30239 DOWNSTREAM tRNA:CR30238 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18611683	2R_18611683_SNP [dm3] 2R_22724178_SNP [dm6]	A	G	3.298e^-4	0.732	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	7771333	3R_7771333_SNP [dm3] 3R_11945611_SNP [dm6]	T	A	3.305e^-4	0.732	INTRON Cad87A
2L	5381835	2L_5381835_SNP [dm3] 2L_5381835_SNP [dm6]	T	A	3.317e^-4	0.732	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3992892	3L_3992892_SNP [dm3] 3L_3992892_SNP [dm6]	A	T	3.319e^-4	0.732	UTR_3_PRIME scrt
3L	13607852	3L_13607852_SNP [dm3] 3L_13614752_SNP [dm6]	C	T	3.323e^-4	0.732	INTRON bru-3	TF binding site mE1_TFBS_HSA
3L	14259661	3L_14259661_SNP [dm3] 3L_14266561_SNP [dm6]	G	A	3.328e^-4	0.732	INTERGENIC
3R	19446955	3R_19446955_INS [dm3] 3R_23621233_INS [dm6]	C	CCACC	3.329e^-4	0.732	INTRON CG31145
2L	1930933	2L_1930933_SNP [dm3] 2L_1930933_SNP [dm6]	A	G	3.332e^-4	0.732	INTRON CG7337
3L	11849676	3L_11849676_SNP [dm3] 3L_11856576_SNP [dm6]	G	A	3.334e^-4	0.732	INTRON CG44837
3R	20448243	3R_20448243_SNP [dm3] 3R_24622521_SNP [dm6]	T	G	3.346e^-4	0.732	INTRON mld
2L	5381827	2L_5381827_SNP [dm3] 2L_5381827_SNP [dm6]	A	G	3.348e^-4	0.732	UPSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2060312	3R_2060312_SNP [dm3] 3R_6234590_SNP [dm6]	G	A	3.348e^-4	0.732	UPSTREAM Osi6 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2060313	3R_2060313_SNP [dm3] 3R_6234591_SNP [dm6]	G	A	3.348e^-4	0.732	UPSTREAM Osi6 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12530826	2L_12530826_SNP [dm3] 2L_12530826_SNP [dm6]	A	T	3.349e^-4	0.732	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	24976270	3R_24976270_SNP [dm3] 3R_29150548_SNP [dm6]	C	A	3.350e^-4	0.732	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	1343177	3R_1343177_SNP [dm3] 3R_5517455_SNP [dm6]	T	A	3.359e^-4	0.733	START_GAINED Itp-r83A UTR_5_PRIME Itp-r83A INTRON Nmdar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14400103	2R_14400103_SNP [dm3] 2R_18512598_SNP [dm6]	T	C	3.365e^-4	0.733	INTERGENIC
2L	6750964	2L_6750964_SNP [dm3] 2L_6750964_SNP [dm6]	T	C	3.374e^-4	0.733	INTRON CG11221
2L	7886804	2L_7886804_SNP [dm3] 2L_7886804_SNP [dm6]	C	G	3.374e^-4	0.733	DOWNSTREAM CG34132 & 1 other INTRON CG7102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	13365561	2L_13365561_SNP [dm3] 2L_13365561_SNP [dm6]	C	T	3.375e^-4	0.733	SYNONYMOUS_CODING Nnp-1 UPSTREAM CG6523	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19794966	2R_19794966_INS [dm3] 2R_23907443_INS [dm6]	A	AACACAAAGTTA...	3.380e^-4	0.733	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6750367	2L_6750367_SNP [dm3] 2L_6750367_SNP [dm6]	C	T	3.388e^-4	0.733	INTRON CG11221
3R	2029522	3R_2029522_SNP [dm3] 3R_6203800_SNP [dm6]	A	T	3.394e^-4	0.733	INTRON Osi24
3R	6223922	3R_6223922_SNP [dm3] 3R_10398200_SNP [dm6]	T	C	3.399e^-4	0.733	NON_SYNONYMOUS_CODING cwo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7392849	3L_7392849_DEL [dm3] 3L_7399749_DEL [dm6]	CAC	C	3.407e^-4	0.733	UTR_3_PRIME CG8562 UPSTREAM CG18417
2R	2911529	2R_2911529_SNP [dm3] 2R_7024024_SNP [dm6]	A	T	3.410e^-4	0.733	UPSTREAM Tsp42Ef EXON CR44172
2R	2913453	2R_2913453_DEL [dm3] 2R_7025948_DEL [dm6]	ACAGTCACAC	A	3.410e^-4	0.733	INTRON Tsp42Ef	TF binding site BDTNP1_TFBS_twi
2R	2913465	2R_2913465_DEL [dm3] 2R_7025960_DEL [dm6]	GTATCAGAGCTAAATCGAAA...	G	3.410e^-4	0.733	INTRON Tsp42Ef	TF binding site BDTNP1_TFBS_twi
2L	7489866	2L_7489866_SNP [dm3] 2L_7489866_SNP [dm6]	G	A	3.416e^-4	0.733	INTRON Ziz
3L	14199334	3L_14199334_SNP [dm3] 3L_14206234_SNP [dm6]	T	C	3.432e^-4	0.733	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12870426	2R_12870426_SNP [dm3] 2R_16982921_SNP [dm6]	T	A	3.432e^-4	0.733	INTRON Cbp53E
X	3802728	X_3802728_SNP [dm3] X_3908695_SNP [dm6]	T	C	3.433e^-4	0.733	INTRON CG42541
3L	14240044	3L_14240044_SNP [dm3] 3L_14246944_SNP [dm6]	A	T	3.434e^-4	0.733	EXON CR44560
3R	13839411	3R_13839411_SNP [dm3] 3R_18013689_SNP [dm6]	G	T	3.438e^-4	0.733	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
2L	6750931	2L_6750931_SNP [dm3] 2L_6750931_SNP [dm6]	A	G	3.445e^-4	0.733	INTRON CG11221
3L	6326441	3L_6326441_SNP [dm3] 3L_6333341_SNP [dm6]	C	A	3.446e^-4	0.733	INTRON CG13300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23833568	3L_23833568_SNP [dm3] 3L_23840468_SNP [dm6]	G	T	3.447e^-4	0.733	INTRON CG40470
2R	18615476	2R_18615476_INS [dm3] 2R_22727971_INS [dm6]	A	ATATAT	3.448e^-4	0.733	UTR_5_PRIME jbug INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	4439615	2R_4439615_SNP [dm3] 2R_8552110_SNP [dm6]	C	T	3.463e^-4	0.733	SYNONYMOUS_CODING CG12780
2R	4439626	2R_4439626_SNP [dm3] 2R_8552121_SNP [dm6]	G	A	3.463e^-4	0.733	NON_SYNONYMOUS_CODING CG12780
3L	12848521	3L_12848521_SNP [dm3] 3L_12855421_SNP [dm6]	G	T	3.465e^-4	0.733	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad
3L	7612048	3L_7612048_SNP [dm3] 3L_7618948_SNP [dm6]	A	C	3.467e^-4	0.733	INTRON CG33275
3L	15971168	3L_15971168_SNP [dm3] 3L_15978068_SNP [dm6]	T	C	3.473e^-4	0.733	SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
2L	15554079	2L_15554079_SNP [dm3] 2L_15554079_SNP [dm6]	C	A	3.474e^-4	0.733	INTRON kek3
2L	15038668	2L_15038668_SNP [dm3] 2L_15038668_SNP [dm6]	A	G	3.478e^-4	0.733	SYNONYMOUS_CODING CIAPIN1 UPSTREAM Su_H_ DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	2282359	3R_2282359_SNP [dm3] 3R_6456637_SNP [dm6]	C	T	3.490e^-4	0.733	UTR_5_PRIME CG9727 UPSTREAM Zif & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19655061	3R_19655061_SNP [dm3] 3R_23829339_SNP [dm6]	T	A	3.496e^-4	0.733	INTRON CG34355
3L	15992564	3L_15992564_SNP [dm3] 3L_15999464_SNP [dm6]	G	A	3.498e^-4	0.733	INTRON CG5830
3L	18823762	3L_18823762_SNP [dm3] 3L_18830662_SNP [dm6]	A	G	3.501e^-4	0.733	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	3.505e^-4	0.733	INTERGENIC
2R	11472329	2R_11472329_SNP [dm3] 2R_15584824_SNP [dm6]	T	A	3.515e^-4	0.733	INTERGENIC
2L	11190977	2L_11190977_SNP [dm3] 2L_11190977_SNP [dm6]	C	G	3.515e^-4	0.733	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	8695914	2L_8695914_SNP [dm3] 2L_8695914_SNP [dm6]	A	G	3.519e^-4	0.733	INTRON Hnf4
2R	19775120	2R_19775120_SNP [dm3] 2R_23887597_SNP [dm6]	A	T	3.527e^-4	0.733	INTRON CG5597
3R	2299036	3R_2299036_SNP [dm3] 3R_6473314_SNP [dm6]	G	A	3.528e^-4	0.733	INTERGENIC
3L	11311664	3L_11311664_SNP [dm3] 3L_11318564_SNP [dm6]	G	T	3.537e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	11899960	2R_11899960_SNP [dm3] 2R_16012455_SNP [dm6]	T	C	3.544e^-4	0.733	SYNONYMOUS_CODING CG8389
2R	11899978	2R_11899978_SNP [dm3] 2R_16012473_SNP [dm6]	T	C	3.544e^-4	0.733	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2L	20018335	2L_20018335_SNP [dm3] 2L_20018335_SNP [dm6]	T	C	3.550e^-4	0.733	INTERGENIC
3L	79409	3L_79409_SNP [dm3] 3L_79409_SNP [dm6]	G	A	3.557e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9530518	3R_9530518_SNP [dm3] 3R_13704796_SNP [dm6]	T	C	3.560e^-4	0.733	SYNONYMOUS_CODING Adgf-D
X	12731601	X_12731601_SNP [dm3] X_12837568_SNP [dm6]	C	G	3.577e^-4	0.733	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12179119	3L_12179119_SNP [dm3] 3L_12186019_SNP [dm6]	C	A	3.582e^-4	0.733	UTR_5_PRIME CG6910 INTRON CG6910
3R	9854753	3R_9854753_SNP [dm3] 3R_14029031_SNP [dm6]	T	C	3.584e^-4	0.733	UPSTREAM Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	5229784	3L_5229784_SNP [dm3] 3L_5236684_SNP [dm6]	A	T	3.591e^-4	0.733	DOWNSTREAM CG4669 INTRON shep
2L	8802663	2L_8802663_SNP [dm3] 2L_8802663_SNP [dm6]	G	A	3.594e^-4	0.733	INTERGENIC
3R	2045263	3R_2045263_SNP [dm3] 3R_6219541_SNP [dm6]	G	T	3.596e^-4	0.733	INTRON Osi4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2161052	3R_2161052_SNP [dm3] 3R_6335330_SNP [dm6]	G	A	3.596e^-4	0.733	UPSTREAM Osi19 INTERGENIC
3L	10329267	3L_10329267_SNP [dm3] 3L_10336167_SNP [dm6]	T	C	3.598e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	15128780	2L_15128780_SNP [dm3] 2L_15128780_SNP [dm6]	C	A	3.603e^-4	0.733	UPSTREAM CR43854 EXON CR44706
2R	19103797	2R_19103797_INS [dm3] 2R_23216274_INS [dm6]	T	TGCT	3.604e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12487477	2R_12487477_SNP [dm3] 2R_16599972_SNP [dm6]	A	G	3.605e^-4	0.733	SYNONYMOUS_CODING CG5089 INTRON CG8303
3R	13569346	3R_13569346_SNP [dm3] 3R_17743624_SNP [dm6]	G	A	3.609e^-4	0.733	INTRON TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19220933	2L_19220933_INS [dm3] 2L_19220933_INS [dm6]	T	TTTCAAACACGTATCACT...	3.610e^-4	0.733	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9776555	3L_9776555_SNP [dm3] 3L_9783455_SNP [dm6]	T	A	3.614e^-4	0.733	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5382495	2L_5382495_SNP [dm3] 2L_5382495_SNP [dm6]	C	A	3.623e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8167950	3L_8167950_SNP [dm3] 3L_8174850_SNP [dm6]	C	G	3.626e^-4	0.733	SYNONYMOUS_CODING RecQ4
3L	8167952	3L_8167952_SNP [dm3] 3L_8174852_SNP [dm6]	T	A	3.626e^-4	0.733	NON_SYNONYMOUS_CODING RecQ4
2L	2289850	2L_2289850_SNP [dm3] 2L_2289850_SNP [dm6]	C	T	3.627e^-4	0.733	UPSTREAM CG17237 DOWNSTREAM robl22E INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19220899	2L_19220899_SNP [dm3] 2L_19220899_SNP [dm6]	G	T	3.631e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19220909	2L_19220909_SNP [dm3] 2L_19220909_SNP [dm6]	A	T	3.631e^-4	0.733	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12018598	3R_12018598_SNP [dm3] 3R_16192876_SNP [dm6]	C	T	3.633e^-4	0.733	INTRON sra
3L	12288762	3L_12288762_SNP [dm3] 3L_12295662_SNP [dm6]	A	C	3.643e^-4	0.733	INTRON CG4328
3L	1066588	3L_1066588_SNP [dm3] 3L_1066588_SNP [dm6]	T	A	3.649e^-4	0.733	INTRON bab1
X	18288076	X_18288076_SNP [dm3] X_18394043_SNP [dm6]	A	G	3.650e^-4	0.733	INTRON CG32549
3L	15988681	3L_15988681_SNP [dm3] 3L_15995581_SNP [dm6]	T	C	3.652e^-4	0.733	INTRON CG5830
2L	9720443	2L_9720443_SNP [dm3] 2L_9720443_SNP [dm6]	A	T	3.654e^-4	0.733	INTRON Nckx30C
2L	11917091	2L_11917091_SNP [dm3] 2L_11917091_SNP [dm6]	C	A	3.654e^-4	0.733	INTRON Pde1c
2L	15400331	2L_15400331_SNP [dm3] 2L_15400331_SNP [dm6]	C	G	3.655e^-4	0.733	UPSTREAM CR44860 EXON CR45374
X	20893911	X_20893911_DEL [dm3] X_21022884_DEL [dm6]	GG	G	3.658e^-4	0.733	DOWNSTREAM r-cup INTERGENIC
3R	25460457	3R_25460457_SNP [dm3] 3R_29634735_SNP [dm6]	C	G	3.662e^-4	0.733	INTRON Dop1R2
X	21180164	X_21180164_SNP [dm3] X_21309137_SNP [dm6]	G	A	3.667e^-4	0.733	SYNONYMOUS_CODING CG1801
2L	11248992	2L_11248992_SNP [dm3] 2L_11248992_SNP [dm6]	A	T	3.683e^-4	0.733	INTRON ab
2L	4073262	2L_4073262_SNP [dm3] 2L_4073262_SNP [dm6]	G	T	3.686e^-4	0.733	INTRON ed
3R	16005541	3R_16005541_SNP [dm3] 3R_20179819_SNP [dm6]	G	T	3.687e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21197806	3R_21197806_SNP [dm3] 3R_25372084_SNP [dm6]	A	T	3.688e^-4	0.733	INTRON Fur1
3R	21197807	3R_21197807_SNP [dm3] 3R_25372085_SNP [dm6]	T	C	3.688e^-4	0.733	INTRON Fur1
3L	4135101	3L_4135101_SNP [dm3] 3L_4135101_SNP [dm6]	C	T	3.688e^-4	0.733	SYNONYMOUS_CODING RfC4 UPSTREAM ens	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11505554	3L_11505554_SNP [dm3] 3L_11512454_SNP [dm6]	A	C	3.691e^-4	0.733	SYNONYMOUS_CODING Sgs3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1182859	3L_1182859_SNP [dm3] 3L_1182859_SNP [dm6]	A	C	3.691e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	13413418	2L_13413418_SNP [dm3] 2L_13413418_SNP [dm6]	T	A	3.695e^-4	0.733	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
3R	3654182	3R_3654182_SNP [dm3] 3R_7828460_SNP [dm6]	A	T	3.702e^-4	0.733	INTRON CG34384
3R	3654191	3R_3654191_SNP [dm3] 3R_7828469_SNP [dm6]	A	T	3.702e^-4	0.733	INTRON CG34384
2L	11285957	2L_11285957_SNP [dm3] 2L_11285957_SNP [dm6]	G	T	3.705e^-4	0.733	UPSTREAM Osi21 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6257214	3R_6257214_SNP [dm3] 3R_10431492_SNP [dm6]	A	G	3.717e^-4	0.734	INTERGENIC
2L	15382939	2L_15382939_SNP [dm3] 2L_15382939_SNP [dm6]	C	G	3.719e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2933239	2L_2933239_SNP [dm3] 2L_2933239_SNP [dm6]	G	T	3.728e^-4	0.735	INTRON lilli
2L	2943250	2L_2943250_SNP [dm3] 2L_2943250_SNP [dm6]	A	G	3.736e^-4	0.735	INTRON lilli
3R	15888304	3R_15888304_SNP [dm3] 3R_20062582_SNP [dm6]	A	G	3.743e^-4	0.736	INTERGENIC
2L	14460525	2L_14460525_SNP [dm3] 2L_14460525_SNP [dm6]	A	G	3.746e^-4	0.736	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5960284	3L_5960284_SNP [dm3] 3L_5967184_SNP [dm6]	C	G	3.750e^-4	0.736	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	9545474	3R_9545474_SNP [dm3] 3R_13719752_SNP [dm6]	A	G	3.756e^-4	0.736	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11183990	2L_11183990_SNP [dm3] 2L_11183990_SNP [dm6]	C	T	3.767e^-4	0.736	INTRON Ca-beta
3L	10423401	3L_10423401_SNP [dm3] 3L_10430301_SNP [dm6]	G	A	3.788e^-4	0.736	SYNONYMOUS_CODING Ir67b
X	14793576	X_14793576_SNP [dm3] X_14899543_SNP [dm6]	C	T	3.790e^-4	0.736	INTRON Flo2
2L	15401201	2L_15401201_SNP [dm3] 2L_15401201_SNP [dm6]	G	A	3.793e^-4	0.736	UPSTREAM CR45374 INTERGENIC
2L	10085357	2L_10085357_SNP [dm3] 2L_10085357_SNP [dm6]	G	C	3.796e^-4	0.736	INTRON CG44153
3L	9654907	3L_9654907_SNP [dm3] 3L_9661807_SNP [dm6]	A	T	3.800e^-4	0.736	INTRON fry	TF binding site BDTNP1_TFBS_twi
2L	21009759	2L_21009759_SNP [dm3] 2L_21009759_SNP [dm6]	C	G	3.808e^-4	0.736	INTRON CG42238	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23196211	3R_23196211_SNP [dm3] 3R_27370489_SNP [dm6]	T	G	3.809e^-4	0.736	UPSTREAM CR43476 INTRON CG42534	TF binding site mE1_TFBS_chinmo
2R	3889829	2R_3889829_SNP [dm3] 2R_8002324_SNP [dm6]	A	T	3.814e^-4	0.736	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8988198	2L_8988198_SNP [dm3] 2L_8988198_SNP [dm6]	C	G	3.818e^-4	0.736	INTRON rost
3L	11003234	3L_11003234_SNP [dm3] 3L_11010134_SNP [dm6]	C	G	3.819e^-4	0.736	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7293631	3L_7293631_SNP [dm3] 3L_7300531_SNP [dm6]	G	C	3.826e^-4	0.736	INTRON unc-13-4A
3R	11455667	3R_11455667_SNP [dm3] 3R_15629945_SNP [dm6]	T	C	3.827e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15086370	X_15086370_SNP [dm3] X_15192337_SNP [dm6]	A	T	3.827e^-4	0.736	INTERGENIC
3L	1536837	3L_1536837_SNP [dm3] 3L_1536837_SNP [dm6]	G	A	3.830e^-4	0.736	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1536874	3L_1536874_SNP [dm3] 3L_1536874_SNP [dm6]	G	T	3.830e^-4	0.736	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9654899	3L_9654899_SNP [dm3] 3L_9661799_SNP [dm6]	A	T	3.830e^-4	0.736	INTRON fry	TF binding site BDTNP1_TFBS_twi
X	16759897	X_16759897_SNP [dm3] X_16865864_SNP [dm6]	T	A	3.836e^-4	0.736	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3L	10712198	3L_10712198_SNP [dm3] 3L_10719098_SNP [dm6]	G	A	3.842e^-4	0.736	INTERGENIC
X	1046131	X_1046131_SNP [dm3] X_1152098_SNP [dm6]	A	T	3.846e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5105357	2L_5105357_SNP [dm3] 2L_5105357_SNP [dm6]	C	A	3.849e^-4	0.736	INTRON Msp300
2R	3882539	2R_3882539_SNP [dm3] 2R_7995034_SNP [dm6]	T	A	3.850e^-4	0.736	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC	TF binding site mE1_TFBS_cad
3R	4394470	3R_4394470_SNP [dm3] 3R_8568748_SNP [dm6]	T	C	3.855e^-4	0.736	SYNONYMOUS_CODING Cenp-C
2L	14778228	2L_14778228_DEL [dm3] 2L_14778228_DEL [dm6]	AAA	A	3.860e^-4	0.736	INTERGENIC
2L	7886900	2L_7886900_SNP [dm3] 2L_7886900_SNP [dm6]	A	T	3.868e^-4	0.736	DOWNSTREAM CG34132 & 1 other INTRON CG7102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	10896688	2L_10896688_SNP [dm3] 2L_10896688_SNP [dm6]	G	T	3.875e^-4	0.736	INTERGENIC
3L	10943229	3L_10943229_SNP [dm3] 3L_10950129_SNP [dm6]	C	T	3.876e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9642713	2L_9642713_SNP [dm3] 2L_9642713_SNP [dm6]	T	C	3.880e^-4	0.736	SPLICE_SITE_REGION Apoltp INTRON Apoltp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11002801	2L_11002801_SNP [dm3] 2L_11002801_SNP [dm6]	G	A	3.881e^-4	0.736	UTR_3_PRIME RpL9 DOWNSTREAM RpL9 & 1 other
3R	14006785	3R_14006785_SNP [dm3] 3R_18181063_SNP [dm6]	T	A	3.887e^-4	0.736	SYNONYMOUS_CODING cdm	TF binding site mE1_TFBS_cad
2L	12983310	2L_12983310_SNP [dm3] 2L_12983310_SNP [dm6]	T	A	3.887e^-4	0.736	INTERGENIC
2L	12983325	2L_12983325_SNP [dm3] 2L_12983325_SNP [dm6]	A	T	3.887e^-4	0.736	INTERGENIC
X	18885484	X_18885484_SNP [dm3] X_18991451_SNP [dm6]	C	A	3.890e^-4	0.736	INTRON CG43759
3R	3895768	3R_3895768_SNP [dm3] 3R_8070046_SNP [dm6]	C	A	3.890e^-4	0.736	INTRON mAChR-B
2L	17762078	2L_17762078_SNP [dm3] 2L_17762078_SNP [dm6]	T	C	3.901e^-4	0.736	INTRON CadN
3L	8852285	3L_8852285_SNP [dm3] 3L_8859185_SNP [dm6]	G	A	3.910e^-4	0.736	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	2449011	2L_2449011_SNP [dm3] 2L_2449011_SNP [dm6]	A	G	3.912e^-4	0.736	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2351970	3R_2351970_SNP [dm3] 3R_6526248_SNP [dm6]	G	T	3.917e^-4	0.736	INTERGENIC
3R	19833290	3R_19833290_DEL [dm3] 3R_24007568_DEL [dm6]	CAAC	C	3.917e^-4	0.736	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl
2L	10311121	2L_10311121_SNP [dm3] 2L_10311121_SNP [dm6]	T	C	3.929e^-4	0.736	UTR_3_PRIME CG5385 UPSTREAM Cdk5alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3L	14664960	3L_14664960_SNP [dm3] 3L_14671860_SNP [dm6]	T	A	3.935e^-4	0.736	UPSTREAM ome DOWNSTREAM CG43121 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4826602	2L_4826602_SNP [dm3] 2L_4826602_SNP [dm6]	A	G	3.944e^-4	0.736	INTRON CG15628	TF binding site mE1_TFBS_cad
2R	8448392	2R_8448392_SNP [dm3] 2R_12560887_SNP [dm6]	C	A	3.944e^-4	0.736	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11899966	2R_11899966_SNP [dm3] 2R_16012461_SNP [dm6]	G	T	3.946e^-4	0.736	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	17749003	2R_17749003_SNP [dm3] 2R_21861498_SNP [dm6]	G	T	3.952e^-4	0.736	SYNONYMOUS_CODING CG9294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1664890	3R_1664890_SNP [dm3] 3R_5839168_SNP [dm6]	G	A	3.963e^-4	0.736	DOWNSTREAM CG1208 INTERGENIC
2R	13213406	2R_13213406_SNP [dm3] 2R_17325901_SNP [dm6]	C	T	3.964e^-4	0.736	INTRON mbl
2L	4338426	2L_4338426_SNP [dm3] 2L_4338426_SNP [dm6]	A	C	3.966e^-4	0.736	UPSTREAM Atet INTRON Atet
2L	17797068	2L_17797068_SNP [dm3] 2L_17797068_SNP [dm6]	T	A	3.969e^-4	0.736	INTRON CadN2
3L	15359624	3L_15359624_SNP [dm3] 3L_15366524_SNP [dm6]	C	T	3.977e^-4	0.736	INTERGENIC
3L	8413862	3L_8413862_SNP [dm3] 3L_8420762_SNP [dm6]	A	T	3.982e^-4	0.736	INTRON CG32354	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

Microbiota_OTU010 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results