DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.288e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01261

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.8605	0.088
In_2R_NS	5.6771	0.0585

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

15179 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11095321	2L_11095321_SNP [dm3] 2L_11095321_SNP [dm6]	G	T	0	0	UTR_3_PRIME Ge-1 DOWNSTREAM Ge-1 & 1 other
2L	17814951	2L_17814951_SNP [dm3] 2L_17814951_SNP [dm6]	T	A	0	0	INTRON CadN2
2L	4866008	2L_4866008_SNP [dm3] 2L_4866008_SNP [dm6]	T	C	0	0	NON_SYNONYMOUS_CODING pog
2L	9679476	2L_9679476_SNP [dm3] 2L_9679476_SNP [dm6]	A	G	0	0	INTERGENIC
2R	10135748	2R_10135748_SNP [dm3] 2R_14248243_SNP [dm6]	T	G	0	0	INTRON Mdr50
2R	16967555	2R_16967555_SNP [dm3] 2R_21080050_SNP [dm6]	A	G	0	0	UPSTREAM Treh INTRON Treh
3L	2298633	3L_2298633_SNP [dm3] 3L_2298633_SNP [dm6]	C	T	0	0	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2902788	3L_2902788_SNP [dm3] 3L_2902788_SNP [dm6]	T	C	0	0	INTRON Shab
3L	501818	3L_501818_SNP [dm3] 3L_501818_SNP [dm6]	A	C	0	0	DOWNSTREAM CG34268 INTRON klar
3R	10799702	3R_10799702_SNP [dm3] 3R_14973980_SNP [dm6]	G	C	0	0	INTERGENIC
3R	14870466	3R_14870466_SNP [dm3] 3R_19044744_SNP [dm6]	C	T	0	0	DOWNSTREAM cdi & 1 other INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	14870501	3R_14870501_SNP [dm3] 3R_19044779_SNP [dm6]	T	G	0	0	DOWNSTREAM cdi & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9416786	3R_9416786_SNP [dm3] 3R_13591064_SNP [dm6]	T	C	0	0	DOWNSTREAM CG14369 INTERGENIC
3L	2579779	3L_2579779_SNP [dm3] 3L_2579779_SNP [dm6]	A	T	6.170e^-69	7.653e^-64	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	943561	3L_943561_SNP [dm3] 3L_943561_SNP [dm6]	G	T	6.170e^-69	7.653e^-64	INTRON Glut1
3L	2579911	3L_2579911_SNP [dm3] 3L_2579911_SNP [dm6]	C	T	6.194e^-68	6.170e^-63	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15417511	3R_15417511_SNP [dm3] 3R_19591789_SNP [dm6]	G	A	6.886e^-68	6.170e^-63	SYNONYMOUS_CODING Dys
X	8818976	X_8818976_SNP [dm3] X_8924943_SNP [dm6]	C	T	6.895e^-68	6.170e^-63	UPSTREAM rdgA DOWNSTREAM CG43255 INTRON rdgA
3L	2297155	3L_2297155_SNP [dm3] 3L_2297155_SNP [dm6]	A	C	6.935e^-68	6.170e^-63	INTRON MsR2
3L	2298624	3L_2298624_SNP [dm3] 3L_2298624_SNP [dm6]	T	G	6.935e^-68	6.170e^-63	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20104710	3R_20104710_SNP [dm3] 3R_24278988_SNP [dm6]	A	C	6.964e^-68	6.170e^-63	UPSTREAM CG13611 DOWNSTREAM Orct INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2296832	3L_2296832_SNP [dm3] 3L_2296832_SNP [dm6]	A	G	5.990e^-67	5.066e^-62	INTRON MsR2
3R	10297655	3R_10297655_SNP [dm3] 3R_14471933_SNP [dm6]	G	A	6.935e^-67	5.610e^-62	INTRON cv-c
3L	2298537	3L_2298537_SNP [dm3] 3L_2298537_SNP [dm6]	C	T	7.828e^-67	6.068e^-62	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10282695	2L_10282695_SNP [dm3] 2L_10282695_SNP [dm6]	G	A	1.827e^-65	1.360e^-60	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22911185	3L_22911185_SNP [dm3] 3L_22918085_SNP [dm6]	G	A	1.356e^-24	9.704e^-20	INTRON CG12768	TF binding site BDTNP1_TFBS_twi
3R	10130203	3R_10130203_SNP [dm3] 3R_14304481_SNP [dm6]	T	A	2.553e^-24	1.759e^-19	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259	TF binding site mE1_TFBS_cad
3L	2293909	3L_2293909_SNP [dm3] 3L_2293909_SNP [dm6]	A	G	6.228e^-23	4.138e^-18	INTRON MsR2
3R	10130223	3R_10130223_SNP [dm3] 3R_14304501_SNP [dm6]	T	A	8.484e^-22	5.443e^-17	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259	TF binding site mE1_TFBS_cad
2L	13179113	2L_13179113_SNP [dm3] 2L_13179113_SNP [dm6]	T	G	1.702e^-21	1.056e^-16	UPSTREAM CG5287 DOWNSTREAM CG5439 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12130370	2L_12130370_SNP [dm3] 2L_12130370_SNP [dm6]	G	A	8.083e^-21	4.851e^-16	DOWNSTREAM rho-6 & 1 other INTERGENIC
2L	12130385	2L_12130385_SNP [dm3] 2L_12130385_SNP [dm6]	G	A	1.130e^-20	6.571e^-16	DOWNSTREAM rho-6 & 1 other INTERGENIC
2L	12130392	2L_12130392_SNP [dm3] 2L_12130392_SNP [dm6]	T	C	2.581e^-20	1.455e^-15	DOWNSTREAM rho-6 & 1 other INTERGENIC
2R	11957176	2R_11957176_SNP [dm3] 2R_16069671_SNP [dm6]	G	T	2.869e^-19	1.570e^-14	INTERGENIC
3L	2297987	3L_2297987_SNP [dm3] 3L_2297987_SNP [dm6]	T	A	2.775e^-17	1.395e^-12	INTRON MsR2
3L	2298016	3L_2298016_SNP [dm3] 3L_2298016_SNP [dm6]	C	G	2.775e^-17	1.395e^-12	INTRON MsR2	TF binding site mE1_TFBS_HSA
3L	2298023	3L_2298023_DEL [dm3] 3L_2298023_DEL [dm6]	GTTGTTTATTCGGTTTCTTT...	G	2.775e^-17	1.395e^-12	INTRON MsR2	TF binding site mE1_TFBS_HSA
3R	22863547	3R_22863547_INS [dm3] 3R_27037825_INS [dm6]	G	GG	8.970e^-17	4.391e^-12	INTRON RYa-R	TF binding site mE1_TFBS_cad
2L	18884734	2L_18884734_SNP [dm3] 2L_18884734_SNP [dm6]	C	T	2.591e^-16	1.236e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17751335	2R_17751335_SNP [dm3] 2R_21863830_SNP [dm6]	G	A	3.608e^-16	1.678e^-11	INTERGENIC
2R	9398901	2R_9398901_SNP [dm3] 2R_13511396_SNP [dm6]	T	A	6.546e^-16	2.815e^-11	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2610329	3L_2610329_SNP [dm3] 3L_2610329_SNP [dm6]	A	G	6.546e^-16	2.815e^-11	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15413451	3R_15413451_SNP [dm3] 3R_19587729_SNP [dm6]	C	T	6.546e^-16	2.815e^-11	INTRON Dys
3L	2297759	3L_2297759_SNP [dm3] 3L_2297759_SNP [dm6]	A	T	6.899e^-16	2.815e^-11	INTRON MsR2
3L	8216207	3L_8216207_SNP [dm3] 3L_8223107_SNP [dm6]	A	T	6.899e^-16	2.815e^-11	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14755447	X_14755447_SNP [dm3] X_14861414_SNP [dm6]	G	T	6.960e^-16	2.815e^-11	INTRON Flo2
X	3891054	X_3891054_SNP [dm3] X_3997021_SNP [dm6]	A	T	7.407e^-16	2.932e^-11	INTERGENIC
2L	9099892	2L_9099892_SNP [dm3] 2L_9099892_SNP [dm6]	T	C	8.816e^-16	3.254e^-11	DOWNSTREAM CR44482 INTERGENIC
3R	22864150	3R_22864150_SNP [dm3] 3R_27038428_SNP [dm6]	C	T	9.444e^-16	3.254e^-11	INTRON RYa-R
3R	22864168	3R_22864168_SNP [dm3] 3R_27038446_SNP [dm6]	A	C	9.444e^-16	3.254e^-11	INTRON RYa-R
3R	22865359	3R_22865359_SNP [dm3] 3R_27039637_SNP [dm6]	G	A	9.444e^-16	3.254e^-11	INTRON RYa-R
3R	22865360	3R_22865360_SNP [dm3] 3R_27039638_SNP [dm6]	G	A	9.444e^-16	3.254e^-11	INTRON RYa-R
3R	22866568	3R_22866568_SNP [dm3] 3R_27040846_SNP [dm6]	A	G	9.444e^-16	3.254e^-11	INTRON RYa-R
3R	22867152	3R_22867152_SNP [dm3] 3R_27041430_SNP [dm6]	A	T	9.444e^-16	3.254e^-11	INTRON RYa-R
3R	15415190	3R_15415190_SNP [dm3] 3R_19589468_SNP [dm6]	A	G	1.066e^-15	3.304e^-11	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9396953	2R_9396953_SNP [dm3] 2R_13509448_SNP [dm6]	T	A	1.088e^-15	3.304e^-11	UPSTREAM mip120 DOWNSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	6593206	3L_6593206_SNP [dm3] 3L_6600106_SNP [dm6]	C	T	1.100e^-15	3.304e^-11	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_cad
3R	23534910	3R_23534910_SNP [dm3] 3R_27709188_SNP [dm6]	T	C	1.100e^-15	3.304e^-11	SYNONYMOUS_CODING CG12877	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	3562229	3L_3562229_SNP [dm3] 3L_3562229_SNP [dm6]	A	G	1.101e^-15	3.304e^-11	INTRON Eip63E
3L	3562231	3L_3562231_INS [dm3] 3L_3562231_INS [dm6]	G	GAAG	1.101e^-15	3.304e^-11	INTRON Eip63E
X	8704505	X_8704505_SNP [dm3] X_8810472_SNP [dm6]	G	T	1.101e^-15	3.304e^-11	INTERGENIC
X	8704600	X_8704600_SNP [dm3] X_8810567_SNP [dm6]	C	T	1.101e^-15	3.304e^-11	INTERGENIC
3L	15414060	3L_15414060_SNP [dm3] 3L_15420960_SNP [dm6]	G	T	1.119e^-15	3.304e^-11	INTERGENIC
2L	11239374	2L_11239374_SNP [dm3] 2L_11239374_SNP [dm6]	C	A	1.299e^-15	3.775e^-11	INTRON ab
3R	5847231	3R_5847231_SNP [dm3] 3R_10021509_SNP [dm6]	T	G	1.492e^-15	4.272e^-11	UPSTREAM Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	22863486	3R_22863486_SNP [dm3] 3R_27037764_SNP [dm6]	A	G	1.661e^-15	4.422e^-11	INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	15438220	3R_15438220_SNP [dm3] 3R_19612498_SNP [dm6]	T	G	1.722e^-15	4.422e^-11	UPSTREAM CG16727 DOWNSTREAM CG17752 INTERGENIC
3R	15438229	3R_15438229_DEL [dm3] 3R_19612507_DEL [dm6]	GG	G	1.722e^-15	4.422e^-11	UPSTREAM CG16727 DOWNSTREAM CG17752 INTERGENIC
2R	9921793	2R_9921793_SNP [dm3] 2R_14034288_SNP [dm6]	T	C	1.722e^-15	4.422e^-11	INTRON mam
X	14763129	X_14763129_DEL [dm3] X_14869096_DEL [dm6]	AA	A	1.766e^-15	4.422e^-11	INTRON Flo2 & 1 other
2R	8880829	2R_8880829_DEL [dm3] 2R_12993324_DEL [dm6]	TGATACAGT	T	1.800e^-15	4.422e^-11	UPSTREAM CG33798 INTERGENIC
2R	8880852	2R_8880852_SNP [dm3] 2R_12993347_SNP [dm6]	G	A	1.800e^-15	4.422e^-11	UPSTREAM CG33798 INTERGENIC
3R	10139020	3R_10139020_SNP [dm3] 3R_14313298_SNP [dm6]	C	T	1.800e^-15	4.422e^-11	SYNONYMOUS_CODING CG31321
3R	10143727	3R_10143727_SNP [dm3] 3R_14318005_SNP [dm6]	C	T	1.800e^-15	4.422e^-11	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10297887	3R_10297887_SNP [dm3] 3R_14472165_SNP [dm6]	G	T	1.800e^-15	4.422e^-11	INTRON cv-c
2R	1800180	2R_1800180_SNP [dm3] 2R_5912675_SNP [dm6]	C	A	1.829e^-15	4.422e^-11	INTRON CG43366	TF binding site mE1_TFBS_chinmo
3L	2298844	3L_2298844_SNP [dm3] 3L_2298844_SNP [dm6]	T	G	1.851e^-15	4.422e^-11	NON_SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5859809	3R_5859809_SNP [dm3] 3R_10034087_SNP [dm6]	C	A	1.854e^-15	4.422e^-11	INTRON Mical
2L	6809833	2L_6809833_SNP [dm3] 2L_6809833_SNP [dm6]	G	A	2.045e^-15	4.815e^-11	INTERGENIC
2R	7836874	2R_7836874_SNP [dm3] 2R_11949369_SNP [dm6]	C	A	2.241e^-15	5.212e^-11	INTRON CG13188
2L	16181135	2L_16181135_SNP [dm3] 2L_16181135_SNP [dm6]	G	A	2.363e^-15	5.362e^-11	INTRON Ca-alpha1D
2L	16181222	2L_16181222_SNP [dm3] 2L_16181222_SNP [dm6]	A	T	2.363e^-15	5.362e^-11	INTRON Ca-alpha1D
2L	14457306	2L_14457306_SNP [dm3] 2L_14457306_SNP [dm6]	G	A	2.482e^-15	5.564e^-11	EXON CR44730	TF binding site mE1_TFBS_cad
3R	15435481	3R_15435481_SNP [dm3] 3R_19609759_SNP [dm6]	T	C	2.848e^-15	6.250e^-11	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
3R	15438189	3R_15438189_SNP [dm3] 3R_19612467_SNP [dm6]	T	A	2.855e^-15	6.250e^-11	UPSTREAM CG16727 DOWNSTREAM CG17752 INTERGENIC
3R	10550079	3R_10550079_SNP [dm3] 3R_14724357_SNP [dm6]	C	A	2.965e^-15	6.261e^-11	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	2295283	3L_2295283_SNP [dm3] 3L_2295283_SNP [dm6]	G	T	2.981e^-15	6.261e^-11	INTRON MsR2
3L	2297113	3L_2297113_SNP [dm3] 3L_2297113_SNP [dm6]	C	T	2.981e^-15	6.261e^-11	INTRON MsR2
3R	10299485	3R_10299485_SNP [dm3] 3R_14473763_SNP [dm6]	G	A	2.995e^-15	6.261e^-11	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9370505	2L_9370505_INS [dm3] 2L_9370505_INS [dm6]	T	TGT	3.206e^-15	6.627e^-11	UTR_3_PRIME Shawl
3L	22899521	3L_22899521_SNP [dm3] 3L_22906421_SNP [dm6]	A	T	3.323e^-15	6.793e^-11	DOWNSTREAM BoYb INTERGENIC
2L	20414506	2L_20414506_SNP [dm3] 2L_20414506_SNP [dm6]	T	A	3.407e^-15	6.873e^-11	UTR_5_PRIME CG10947 DOWNSTREAM CG10949
2R	10074949	2R_10074949_SNP [dm3] 2R_14187444_SNP [dm6]	A	G	3.436e^-15	6.873e^-11	INTRON CG30069
2L	19778608	2L_19778608_SNP [dm3] 2L_19778608_SNP [dm6]	G	T	3.730e^-15	7.382e^-11	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11519462	3L_11519462_SNP [dm3] 3L_11526362_SNP [dm6]	G	A	4.219e^-15	8.177e^-11	INTRON Mob2
3R	3460857	3R_3460857_SNP [dm3] 3R_7635135_SNP [dm6]	T	G	4.219e^-15	8.177e^-11	INTRON CG34127
3R	22864726	3R_22864726_SNP [dm3] 3R_27039004_SNP [dm6]	C	G	4.343e^-15	8.238e^-11	INTRON RYa-R
3R	22863339	3R_22863339_SNP [dm3] 3R_27037617_SNP [dm6]	C	T	4.384e^-15	8.238e^-11	INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	22867841	3R_22867841_SNP [dm3] 3R_27042119_SNP [dm6]	G	A	4.384e^-15	8.238e^-11	INTRON RYa-R
3R	18898068	3R_18898068_SNP [dm3] 3R_23072346_SNP [dm6]	G	T	4.735e^-15	8.722e^-11	UTR_3_PRIME CG13830 DOWNSTREAM CG13830
3R	18901743	3R_18901743_SNP [dm3] 3R_23076021_SNP [dm6]	G	A	4.735e^-15	8.722e^-11	SYNONYMOUS_CODING CG13830
3R	10301383	3R_10301383_SNP [dm3] 3R_14475661_SNP [dm6]	T	G	4.986e^-15	9.007e^-11	INTRON cv-c
3R	10301408	3R_10301408_SNP [dm3] 3R_14475686_SNP [dm6]	A	G	4.986e^-15	9.007e^-11	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20875894	3R_20875894_SNP [dm3] 3R_25050172_SNP [dm6]	A	C	5.228e^-15	9.352e^-11	UTR_5_PRIME CG11791 UPSTREAM CG11791 DOWNSTREAM CG11790 INTRON CG11791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19958144	3L_19958144_INS [dm3] 3L_19965044_INS [dm6]	A	ATGAATGTTGGCCAAAGACC...	5.936e^-15	9.792e^-11	INTRON Ac76E
2L	14457268	2L_14457268_SNP [dm3] 2L_14457268_SNP [dm6]	T	C	6.305e^-15	9.792e^-11	EXON CR44730	TF binding site mE1_TFBS_cad
2R	16918069	2R_16918069_INS [dm3] 2R_21030564_INS [dm6]	C	GATGATCTAAA...	6.526e^-15	9.792e^-11	UPSTREAM CR45148 INTERGENIC
3L	11632372	3L_11632372_SNP [dm3] 3L_11639272_SNP [dm6]	C	T	6.526e^-15	9.792e^-11	INTRON CG32091
3L	2299436	3L_2299436_SNP [dm3] 3L_2299436_SNP [dm6]	A	C	6.526e^-15	9.792e^-11	INTRON MsR2	TF binding site mE1_TFBS_cad
3L	7967874	3L_7967874_SNP [dm3] 3L_7974774_SNP [dm6]	G	A	6.526e^-15	9.792e^-11	DOWNSTREAM HP4 INTRON CG8042	TF binding site mE1_TFBS_inv
3L	9453412	3L_9453412_SNP [dm3] 3L_9460312_SNP [dm6]	T	A	6.526e^-15	9.792e^-11	NON_SYNONYMOUS_CODING CG3434 UPSTREAM CG44838 DOWNSTREAM CG3552	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	10106974	3R_10106974_SNP [dm3] 3R_14281252_SNP [dm6]	A	G	6.526e^-15	9.792e^-11	INTRON trx
3R	10114044	3R_10114044_SNP [dm3] 3R_14288322_SNP [dm6]	G	T	6.526e^-15	9.792e^-11	UPSTREAM CG12207 EXON CR45596	TF binding site mE1_TFBS_Trl
3R	10114045	3R_10114045_SNP [dm3] 3R_14288323_SNP [dm6]	G	T	6.526e^-15	9.792e^-11	UPSTREAM CG12207 EXON CR45596	TF binding site mE1_TFBS_Trl
3R	10114174	3R_10114174_SNP [dm3] 3R_14288452_SNP [dm6]	C	T	6.526e^-15	9.792e^-11	UPSTREAM CG12207 EXON CR45596	TF binding site mE1_TFBS_Trl
3R	10850608	3R_10850608_SNP [dm3] 3R_15024886_SNP [dm6]	C	A	6.526e^-15	9.792e^-11	INTERGENIC
3R	21354058	3R_21354058_SNP [dm3] 3R_25528336_SNP [dm6]	G	A	6.526e^-15	9.792e^-11	INTRON msi
3R	24276089	3R_24276089_SNP [dm3] 3R_28450367_SNP [dm6]	A	T	6.526e^-15	9.792e^-11	INTRON beat-VI
X	12095470	X_12095470_SNP [dm3] X_12201437_SNP [dm6]	G	A	6.526e^-15	9.792e^-11	INTRON Ten-a
X	15134074	X_15134074_SNP [dm3] X_15240041_SNP [dm6]	A	C	6.526e^-15	9.792e^-11	INTERGENIC
X	15421659	X_15421659_SNP [dm3] X_15527626_SNP [dm6]	T	A	6.526e^-15	9.792e^-11	INTRON Ac13E
X	2995144	X_2995144_SNP [dm3] X_3101111_SNP [dm6]	C	T	6.526e^-15	9.792e^-11	INTRON kirre
X	2995150	X_2995150_SNP [dm3] X_3101117_SNP [dm6]	T	A	6.526e^-15	9.792e^-11	INTRON kirre
X	2995151	X_2995151_SNP [dm3] X_3101118_SNP [dm6]	C	A	6.526e^-15	9.792e^-11	INTRON kirre
2R	470212	2R_470212_SNP [dm3] 2R_4582707_SNP [dm6]	G	C	7.584e^-15	1.129e^-10	INTERGENIC	transposable element FlyBase
3R	10120064	3R_10120064_SNP [dm3] 3R_14294342_SNP [dm6]	A	G	7.965e^-15	1.172e^-10	INTRON CG12207
3R	10133742	3R_10133742_SNP [dm3] 3R_14308020_SNP [dm6]	A	G	8.002e^-15	1.172e^-10	INTRON su_Hw_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15314866	3R_15314866_SNP [dm3] 3R_19489144_SNP [dm6]	T	C	8.121e^-15	1.180e^-10	DOWNSTREAM CG15025 INTRON Dys
2R	10175409	2R_10175409_SNP [dm3] 2R_14287904_SNP [dm6]	G	A	8.440e^-15	1.217e^-10	UPSTREAM Ih INTRON Ih
X	13451124	X_13451124_SNP [dm3] X_13557091_SNP [dm6]	T	G	8.907e^-15	1.275e^-10	NON_SYNONYMOUS_CODING CG32631
2L	7008498	2L_7008498_SNP [dm3] 2L_7008498_SNP [dm6]	G	T	1.052e^-14	1.358e^-10	UTR_5_PRIME uif INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	1396439	3L_1396439_SNP [dm3] 3L_1396439_SNP [dm6]	C	T	1.052e^-14	1.358e^-10	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5851098	3R_5851098_SNP [dm3] 3R_10025376_SNP [dm6]	T	G	1.052e^-14	1.358e^-10	UPSTREAM Mical & 1 other INTRON Mical
3R	5925620	3R_5925620_SNP [dm3] 3R_10099898_SNP [dm6]	T	C	1.052e^-14	1.358e^-10	UPSTREAM mir-277 EXON CR43459
X	21158249	X_21158249_SNP [dm3] X_21287222_SNP [dm6]	G	A	1.052e^-14	1.358e^-10	SYNONYMOUS_CODING CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6976410	3L_6976410_SNP [dm3] 3L_6983310_SNP [dm6]	G	C	1.052e^-14	1.358e^-10	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10643307	3R_10643307_SNP [dm3] 3R_14817585_SNP [dm6]	T	C	1.052e^-14	1.358e^-10	NON_SYNONYMOUS_CODING btsz UTR_5_PRIME btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	14906909	2R_14906909_SNP [dm3] 2R_19019404_SNP [dm6]	C	G	1.053e^-14	1.358e^-10	INTERGENIC
2R	19000827	2R_19000827_SNP [dm3] 2R_23113304_SNP [dm6]	G	T	1.053e^-14	1.358e^-10	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7310183	2R_7310183_SNP [dm3] 2R_11422678_SNP [dm6]	A	G	1.053e^-14	1.358e^-10	INTRON Drip
3L	5747080	3L_5747080_DEL [dm3] 3L_5753980_DEL [dm6]	TCGCACCC	T	1.053e^-14	1.358e^-10	UPSTREAM Ubp64E INTRON Ubp64E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11536266	3R_11536266_DEL [dm3] 3R_15710544_DEL [dm6]	AA	A	1.053e^-14	1.358e^-10	INTERGENIC
3R	5926239	3R_5926239_SNP [dm3] 3R_10100517_SNP [dm6]	A	G	1.053e^-14	1.358e^-10	UPSTREAM mir-34 DOWNSTREAM mir-277 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	7474880	X_7474880_SNP [dm3] X_7580847_SNP [dm6]	G	A	1.060e^-14	1.358e^-10	INTERGENIC	regulatory region REDfly_CRMs
2R	16921926	2R_16921926_INS [dm3] 2R_21034421_INS [dm6]	A	AA	1.065e^-14	1.358e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10758821	3L_10758821_SNP [dm3] 3L_10765721_SNP [dm6]	G	A	1.066e^-14	1.358e^-10	INTERGENIC
2L	5588580	2L_5588580_SNP [dm3] 2L_5588580_SNP [dm6]	G	A	1.112e^-14	1.398e^-10	UPSTREAM CG7251 INTERGENIC
3R	4883991	3R_4883991_INS [dm3] 3R_9058269_INS [dm6]	A	AGA	1.112e^-14	1.398e^-10	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8672754	2L_8672754_SNP [dm3] 2L_8672754_SNP [dm6]	T	G	1.177e^-14	1.451e^-10	START_GAINED Glt UTR_5_PRIME Glt UPSTREAM Glt DOWNSTREAM Sema-1a
2L	8673131	2L_8673131_SNP [dm3] 2L_8673131_SNP [dm6]	C	T	1.177e^-14	1.451e^-10	UTR_5_PRIME Glt UPSTREAM Glt	TF binding site mE1_TFBS_cad
2L	8673168	2L_8673168_SNP [dm3] 2L_8673168_SNP [dm6]	T	A	1.177e^-14	1.451e^-10	UTR_5_PRIME Glt	TF binding site mE1_TFBS_cad
2R	472233	2R_472233_INS [dm3] 2R_4584728_INS [dm6]	T	TGTTCACGCCAGAAGGGCGC...	1.321e^-14	1.617e^-10	INTERGENIC
3R	23274243	3R_23274243_SNP [dm3] 3R_27448521_SNP [dm6]	G	A	1.373e^-14	1.643e^-10	INTERGENIC
2L	4143064	2L_4143064_SNP [dm3] 2L_4143064_SNP [dm6]	T	C	1.385e^-14	1.643e^-10	INTERGENIC
X	13449377	X_13449377_SNP [dm3] X_13555344_SNP [dm6]	T	C	1.385e^-14	1.643e^-10	UTR_5_PRIME CG11816
X	13449905	X_13449905_SNP [dm3] X_13555872_SNP [dm6]	A	C	1.385e^-14	1.643e^-10	UPSTREAM CG32631 & 1 other INTERGENIC
2L	10284822	2L_10284822_SNP [dm3] 2L_10284822_SNP [dm6]	G	A	1.386e^-14	1.643e^-10	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2L	880126	2L_880126_SNP [dm3] 2L_880126_SNP [dm6]	A	G	1.421e^-14	1.673e^-10	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2L	4871471	2L_4871471_SNP [dm3] 2L_4871471_SNP [dm6]	C	A	1.456e^-14	1.695e^-10	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	9535661	2L_9535661_SNP [dm3] 2L_9535661_SNP [dm6]	C	A	1.458e^-14	1.695e^-10	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8543693	3L_8543693_INS [dm3] 3L_8550593_INS [dm6]	T	TTATATGATTTT...	1.589e^-14	1.813e^-10	INTRON rhea
3L	8543697	3L_8543697_INS [dm3] 3L_8550597_INS [dm6]	A	AA	1.589e^-14	1.813e^-10	INTRON rhea
3L	8543703	3L_8543703_SNP [dm3] 3L_8550603_SNP [dm6]	T	G	1.589e^-14	1.813e^-10	INTRON rhea
3L	5500483	3L_5500483_SNP [dm3] 3L_5507383_SNP [dm6]	C	T	1.653e^-14	1.836e^-10	INTRON CG34342
3L	11005458	3L_11005458_SNP [dm3] 3L_11012358_SNP [dm6]	C	T	1.655e^-14	1.836e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11005547	3L_11005547_SNP [dm3] 3L_11012447_SNP [dm6]	G	T	1.655e^-14	1.836e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10642196	3R_10642196_SNP [dm3] 3R_14816474_SNP [dm6]	C	T	1.682e^-14	1.836e^-10	NON_SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	15727771	3R_15727771_SNP [dm3] 3R_19902049_SNP [dm6]	A	G	1.682e^-14	1.836e^-10	INTRON CG4538	TF binding site mE1_TFBS_cad
2L	9631531	2L_9631531_SNP [dm3] 2L_9631531_SNP [dm6]	G	T	1.696e^-14	1.836e^-10	INTERGENIC
3R	10643308	3R_10643308_SNP [dm3] 3R_14817586_SNP [dm6]	G	T	1.696e^-14	1.836e^-10	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	24761798	3R_24761798_SNP [dm3] 3R_28936076_SNP [dm6]	G	A	1.696e^-14	1.836e^-10	INTRON CG14521
X	3359617	X_3359617_SNP [dm3] X_3465584_SNP [dm6]	A	T	1.698e^-14	1.836e^-10	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
3R	21014963	3R_21014963_SNP [dm3] 3R_25189241_SNP [dm6]	A	T	1.711e^-14	1.840e^-10	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8629962	2R_8629962_SNP [dm3] 2R_12742457_SNP [dm6]	G	C	1.740e^-14	1.860e^-10	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7632158	2L_7632158_SNP [dm3] 2L_7632158_SNP [dm6]	C	A	1.790e^-14	1.862e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7018064	2L_7018064_SNP [dm3] 2L_7018064_SNP [dm6]	G	T	1.794e^-14	1.862e^-10	DOWNSTREAM ade3 INTRON ade3	TF binding site mE1_TFBS_chinmo
2L	6067822	2L_6067822_SNP [dm3] 2L_6067822_SNP [dm6]	G	T	1.832e^-14	1.862e^-10	DOWNSTREAM CG9147 INTRON CG9150	TF binding site mE1_TFBS_inv
2L	7076213	2L_7076213_SNP [dm3] 2L_7076213_SNP [dm6]	T	C	1.832e^-14	1.862e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7076219	2L_7076219_INS [dm3] 2L_7076219_INS [dm6]	A	AAATACATGAACC...	1.832e^-14	1.862e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7076227	2L_7076227_SNP [dm3] 2L_7076227_SNP [dm6]	T	C	1.832e^-14	1.862e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7076232	2L_7076232_SNP [dm3] 2L_7076232_SNP [dm6]	C	T	1.832e^-14	1.862e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7076243	2L_7076243_SNP [dm3] 2L_7076243_SNP [dm6]	T	A	1.832e^-14	1.862e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7076244	2L_7076244_SNP [dm3] 2L_7076244_SNP [dm6]	T	A	1.832e^-14	1.862e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7015839	2L_7015839_SNP [dm3] 2L_7015839_SNP [dm6]	G	A	1.897e^-14	1.899e^-10	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10448300	2L_10448300_SNP [dm3] 2L_10448300_SNP [dm6]	C	T	1.897e^-14	1.899e^-10	SYNONYMOUS_CODING loh	TF binding site mE1_TFBS_cad
3L	2299378	3L_2299378_SNP [dm3] 3L_2299378_SNP [dm6]	G	T	1.898e^-14	1.899e^-10	INTRON MsR2	TF binding site mE1_TFBS_cad
2L	1092140	2L_1092140_SNP [dm3] 2L_1092140_SNP [dm6]	G	T	2.047e^-14	1.924e^-10	INTRON CG4629	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1093007	2L_1093007_SNP [dm3] 2L_1093007_SNP [dm6]	A	T	2.047e^-14	1.924e^-10	INTRON CG4629
2L	1144874	2L_1144874_SNP [dm3] 2L_1144874_SNP [dm6]	T	G	2.047e^-14	1.924e^-10	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	1145270	2L_1145270_SNP [dm3] 2L_1145270_SNP [dm6]	A	T	2.047e^-14	1.924e^-10	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	1145286	2L_1145286_SNP [dm3] 2L_1145286_SNP [dm6]	C	A	2.047e^-14	1.924e^-10	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	1334307	2L_1334307_SNP [dm3] 2L_1334307_SNP [dm6]	G	T	2.047e^-14	1.924e^-10	SYNONYMOUS_CODING CG5440
2L	1334511	2L_1334511_SNP [dm3] 2L_1334511_SNP [dm6]	T	G	2.047e^-14	1.924e^-10	SYNONYMOUS_CODING CG5440
2L	1874313	2L_1874313_SNP [dm3] 2L_1874313_SNP [dm6]	G	A	2.047e^-14	1.924e^-10	DOWNSTREAM CR44075 INTRON CG31663
2L	6084077	2L_6084077_INS [dm3] 2L_6084077_INS [dm6]	A	AAAA	2.047e^-14	1.924e^-10	INTRON Kr-h1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6084083	2L_6084083_SNP [dm3] 2L_6084083_SNP [dm6]	C	G	2.047e^-14	1.924e^-10	INTRON Kr-h1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6890076	2L_6890076_SNP [dm3] 2L_6890076_SNP [dm6]	T	C	2.047e^-14	1.924e^-10	INTRON Nlg2
2L	7699444	2L_7699444_SNP [dm3] 2L_7699444_SNP [dm6]	G	T	2.047e^-14	1.924e^-10	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3R	15314623	3R_15314623_SNP [dm3] 3R_19488901_SNP [dm6]	T	C	2.115e^-14	1.978e^-10	DOWNSTREAM CG15025 INTRON Dys
2L	14531293	2L_14531293_SNP [dm3] 2L_14531293_SNP [dm6]	T	C	2.176e^-14	2.024e^-10	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4673529	2L_4673529_SNP [dm3] 2L_4673529_SNP [dm6]	T	C	2.589e^-14	2.396e^-10	INTERGENIC
3R	22877319	3R_22877319_SNP [dm3] 3R_27051597_SNP [dm6]	C	G	2.721e^-14	2.469e^-10	DOWNSTREAM TwdlT INTRON RYa-R
3R	10801362	3R_10801362_SNP [dm3] 3R_14975640_SNP [dm6]	C	A	2.738e^-14	2.469e^-10	INTERGENIC
3L	6321065	3L_6321065_INS [dm3] 3L_6327965_INS [dm6]	A	ATTATAAA	2.740e^-14	2.469e^-10	DOWNSTREAM Or65b INTRON Or65c
X	12723397	X_12723397_SNP [dm3] X_12829364_SNP [dm6]	A	G	2.740e^-14	2.469e^-10	INTRON Pde9
2L	901421	2L_901421_SNP [dm3] 2L_901421_SNP [dm6]	T	C	2.753e^-14	2.469e^-10	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	4658614	3R_4658614_SNP [dm3] 3R_8832892_SNP [dm6]	G	A	2.760e^-14	2.469e^-10	NON_SYNONYMOUS_CODING pyd DOWNSTREAM pyd INTRON pyd
3R	4672273	3R_4672273_SNP [dm3] 3R_8846551_SNP [dm6]	A	G	2.760e^-14	2.469e^-10	UPSTREAM pyd INTRON pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25733426	3R_25733426_SNP [dm3] 3R_29907704_SNP [dm6]	T	G	2.803e^-14	2.495e^-10	UPSTREAM CG31036 INTERGENIC
3R	7394370	3R_7394370_SNP [dm3] 3R_11568648_SNP [dm6]	C	A	3.014e^-14	2.657e^-10	UPSTREAM Mrp4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9556844	2L_9556844_SNP [dm3] 2L_9556844_SNP [dm6]	G	A	3.032e^-14	2.657e^-10	INTRON jp
2L	11234692	2L_11234692_DEL [dm3] 2L_11234692_DEL [dm6]	GG	G	3.043e^-14	2.657e^-10	UPSTREAM snoRNA:Me18S-G642 & 1 other INTRON ab
3R	17420615	3R_17420615_SNP [dm3] 3R_21594893_SNP [dm6]	C	T	3.057e^-14	2.657e^-10	DOWNSTREAM CR43653 INTRON InR	TF binding site BDTNP1_TFBS_dl
3R	3959607	3R_3959607_DEL [dm3] 3R_8133885_DEL [dm6]	AT	A	3.057e^-14	2.657e^-10	INTERGENIC
X	3359606	X_3359606_SNP [dm3] X_3465573_SNP [dm6]	T	A	3.161e^-14	2.722e^-10	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
X	3359614	X_3359614_SNP [dm3] X_3465581_SNP [dm6]	A	T	3.161e^-14	2.722e^-10	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	6890154	2L_6890154_SNP [dm3] 2L_6890154_SNP [dm6]	A	G	3.246e^-14	2.757e^-10	INTRON Nlg2
2L	9245041	2L_9245041_DEL [dm3] 2L_9245041_DEL [dm6]	TT	T	3.246e^-14	2.757e^-10	INTRON tai
2L	9245058	2L_9245058_SNP [dm3] 2L_9245058_SNP [dm6]	A	C	3.246e^-14	2.757e^-10	INTRON tai
2L	10907480	2L_10907480_SNP [dm3] 2L_10907480_SNP [dm6]	G	A	3.318e^-14	2.794e^-10	SYNONYMOUS_CODING CG7309
3L	23593549	3L_23593549_SNP [dm3] 3L_23600449_SNP [dm6]	T	C	3.318e^-14	2.794e^-10	INTRON AGO3	transposable element FlyBase
2L	7074432	2L_7074432_SNP [dm3] 2L_7074432_SNP [dm6]	A	T	3.399e^-14	2.810e^-10	INTRON Pvf2
2L	9618013	2L_9618013_SNP [dm3] 2L_9618013_SNP [dm6]	T	C	3.399e^-14	2.810e^-10	INTRON GlcAT-S
2L	9618054	2L_9618054_SNP [dm3] 2L_9618054_SNP [dm6]	T	C	3.399e^-14	2.810e^-10	INTRON GlcAT-S
2L	9795096	2L_9795096_SNP [dm3] 2L_9795096_SNP [dm6]	T	G	3.399e^-14	2.810e^-10	UTR_3_PRIME nAChRalpha6
2L	9594380	2L_9594380_SNP [dm3] 2L_9594380_SNP [dm6]	C	T	3.425e^-14	2.820e^-10	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23601028	3L_23601028_SNP [dm3] 3L_23607928_SNP [dm6]	G	T	3.497e^-14	2.845e^-10	INTRON AGO3
2L	14532452	2L_14532452_SNP [dm3] 2L_14532452_SNP [dm6]	G	T	3.499e^-14	2.845e^-10	DOWNSTREAM CR44852 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14451505	2L_14451505_SNP [dm3] 2L_14451505_SNP [dm6]	G	A	3.502e^-14	2.845e^-10	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	14446085	2L_14446085_SNP [dm3] 2L_14446085_SNP [dm6]	T	C	3.582e^-14	2.859e^-10	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	8675983	2L_8675983_SNP [dm3] 2L_8675983_SNP [dm6]	G	A	3.585e^-14	2.859e^-10	NON_SYNONYMOUS_CODING Glt DOWNSTREAM CG9287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23592977	3L_23592977_SNP [dm3] 3L_23599877_SNP [dm6]	T	A	3.587e^-14	2.859e^-10	INTRON AGO3	transposable element FlyBase
2L	10296356	2L_10296356_SNP [dm3] 2L_10296356_SNP [dm6]	C	T	3.611e^-14	2.859e^-10	SYNONYMOUS_CODING CYLD UPSTREAM Hand	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	10471536	2L_10471536_SNP [dm3] 2L_10471536_SNP [dm6]	C	T	3.611e^-14	2.859e^-10	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo
2L	10498482	2L_10498482_SNP [dm3] 2L_10498482_SNP [dm6]	C	G	3.611e^-14	2.859e^-10	INTRON Myo31DF
2L	6827347	2L_6827347_SNP [dm3] 2L_6827347_SNP [dm6]	C	G	3.649e^-14	2.877e^-10	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1095162	2L_1095162_SNP [dm3] 2L_1095162_SNP [dm6]	C	T	3.882e^-14	3.010e^-10	INTRON CG4629
2L	1194018	2L_1194018_SNP [dm3] 2L_1194018_SNP [dm6]	C	G	3.882e^-14	3.010e^-10	INTRON CG5001
2L	1433184	2L_1433184_SNP [dm3] 2L_1433184_SNP [dm6]	A	T	3.882e^-14	3.010e^-10	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	1942739	2L_1942739_SNP [dm3] 2L_1942739_SNP [dm6]	G	C	3.882e^-14	3.010e^-10	INTRON CG7337
2R	16967409	2R_16967409_SNP [dm3] 2R_21079904_SNP [dm6]	C	A	3.971e^-14	3.066e^-10	UPSTREAM Treh INTRON Treh
3L	11392034	3L_11392034_SNP [dm3] 3L_11398934_SNP [dm6]	A	T	4.011e^-14	3.084e^-10	INTERGENIC
2R	8733944	2R_8733944_INS [dm3] 2R_12846439_INS [dm6]	C	CCA	4.151e^-14	3.178e^-10	DOWNSTREAM antr INTRON CG17575	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11536265	3R_11536265_SNP [dm3] 3R_15710543_SNP [dm6]	A	C	4.414e^-14	3.319e^-10	INTERGENIC
3L	14383330	3L_14383330_SNP [dm3] 3L_14390230_SNP [dm6]	A	T	4.419e^-14	3.319e^-10	INTERGENIC
X	3359616	X_3359616_SNP [dm3] X_3465583_SNP [dm6]	A	G	4.419e^-14	3.319e^-10	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
3R	17600259	3R_17600259_SNP [dm3] 3R_21774537_SNP [dm6]	G	A	4.424e^-14	3.319e^-10	SYNONYMOUS_CODING GABA-B-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17600390	3R_17600390_SNP [dm3] 3R_21774668_SNP [dm6]	A	G	4.424e^-14	3.319e^-10	SYNONYMOUS_CODING GABA-B-R2	TF binding site mE1_TFBS_sens
2L	7041752	2L_7041752_SNP [dm3] 2L_7041752_SNP [dm6]	G	A	4.464e^-14	3.322e^-10	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7041755	2L_7041755_SNP [dm3] 2L_7041755_SNP [dm6]	T	C	4.464e^-14	3.322e^-10	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1070654	2L_1070654_DEL [dm3] 2L_1070654_DEL [dm6]	AG	A	4.549e^-14	3.372e^-10	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	19260534	3R_19260534_SNP [dm3] 3R_23434812_SNP [dm6]	A	C	4.647e^-14	3.431e^-10	INTRON CG4374
2L	8891109	2L_8891109_SNP [dm3] 2L_8891109_SNP [dm6]	C	T	4.667e^-14	3.432e^-10	UPSTREAM CG42713 INTERGENIC
2R	6410716	2R_6410716_DEL [dm3] 2R_10523211_DEL [dm6]	GTG	G	4.821e^-14	3.531e^-10	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10358181	3L_10358181_SNP [dm3] 3L_10365081_SNP [dm6]	A	G	4.938e^-14	3.603e^-10	UPSTREAM mir-276a EXON CR44327
2L	9563766	2L_9563766_SNP [dm3] 2L_9563766_SNP [dm6]	G	T	5.106e^-14	3.711e^-10	INTRON jp
X	3359598	X_3359598_DEL [dm3] X_3465565_DEL [dm6]	GTATT	G	5.209e^-14	3.771e^-10	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	7073296	2L_7073296_SNP [dm3] 2L_7073296_SNP [dm6]	C	T	5.391e^-14	3.888e^-10	INTRON Pvf2
2L	6896732	2L_6896732_SNP [dm3] 2L_6896732_SNP [dm6]	C	G	5.467e^-14	3.912e^-10	UPSTREAM Nlg2 INTRON Nlg2	TF binding site mE1_TFBS_chinmo
2L	7077484	2L_7077484_SNP [dm3] 2L_7077484_SNP [dm6]	T	G	5.467e^-14	3.912e^-10	INTRON Pvf2
2L	7015320	2L_7015320_SNP [dm3] 2L_7015320_SNP [dm6]	C	T	5.634e^-14	4.001e^-10	SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19192999	2R_19192999_SNP [dm3] 2R_23305476_SNP [dm6]	G	A	5.634e^-14	4.001e^-10	INTERGENIC
2L	6937037	2L_6937037_SNP [dm3] 2L_6937037_SNP [dm6]	A	T	5.769e^-14	4.065e^-10	INTRON CG18304
2L	6937038	2L_6937038_SNP [dm3] 2L_6937038_SNP [dm6]	T	G	5.769e^-14	4.065e^-10	INTRON CG18304
2L	1095226	2L_1095226_SNP [dm3] 2L_1095226_SNP [dm6]	T	C	6.240e^-14	4.367e^-10	INTRON CG4629
2L	10525082	2L_10525082_SNP [dm3] 2L_10525082_SNP [dm6]	A	T	6.267e^-14	4.367e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6819669	2L_6819669_SNP [dm3] 2L_6819669_SNP [dm6]	T	A	6.267e^-14	4.367e^-10	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	10515534	2L_10515534_SNP [dm3] 2L_10515534_SNP [dm6]	C	T	6.682e^-14	4.638e^-10	INTRON Fatp & 1 other
2R	8733943	2R_8733943_SNP [dm3] 2R_12846438_SNP [dm6]	G	A	6.705e^-14	4.638e^-10	DOWNSTREAM antr INTRON CG17575	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10516737	2L_10516737_SNP [dm3] 2L_10516737_SNP [dm6]	C	T	6.906e^-14	4.669e^-10	SPLICE_SITE_REGION CG45083 & 1 other UTR_5_PRIME Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	10516804	2L_10516804_SNP [dm3] 2L_10516804_SNP [dm6]	T	A	6.906e^-14	4.669e^-10	UTR_5_PRIME Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47 & 1 other INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	10517388	2L_10517388_SNP [dm3] 2L_10517388_SNP [dm6]	G	C	6.906e^-14	4.669e^-10	UTR_5_PRIME Lrr47 UPSTREAM Fatp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	4667815	3R_4667815_SNP [dm3] 3R_8842093_SNP [dm6]	C	A	6.927e^-14	4.669e^-10	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7041715	2L_7041715_SNP [dm3] 2L_7041715_SNP [dm6]	G	T	6.941e^-14	4.669e^-10	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1213203	2L_1213203_SNP [dm3] 2L_1213203_SNP [dm6]	G	T	7.003e^-14	4.669e^-10	INTERGENIC
2L	1240019	2L_1240019_SNP [dm3] 2L_1240019_SNP [dm6]	G	A	7.003e^-14	4.669e^-10	UPSTREAM CG5397 INTERGENIC
2L	1529052	2L_1529052_SNP [dm3] 2L_1529052_SNP [dm6]	G	A	7.003e^-14	4.669e^-10	INTERGENIC
2L	6849990	2L_6849990_SNP [dm3] 2L_6849990_SNP [dm6]	G	T	7.003e^-14	4.669e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	937062	2L_937062_SNP [dm3] 2L_937062_SNP [dm6]	C	A	7.006e^-14	4.669e^-10	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	7040975	2L_7040975_SNP [dm3] 2L_7040975_SNP [dm6]	C	T	7.026e^-14	4.669e^-10	SYNONYMOUS_CODING milt
2L	7041709	2L_7041709_SNP [dm3] 2L_7041709_SNP [dm6]	T	C	7.183e^-14	4.756e^-10	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6272353	2R_6272353_SNP [dm3] 2R_10384848_SNP [dm6]	T	C	7.209e^-14	4.756e^-10	INTRON CG42732
2L	855367	2L_855367_SNP [dm3] 2L_855367_SNP [dm6]	C	A	7.303e^-14	4.785e^-10	UTR_5_PRIME CG13949 UPSTREAM CG13949 DOWNSTREAM kraken	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10480083	2L_10480083_SNP [dm3] 2L_10480083_SNP [dm6]	G	T	7.304e^-14	4.785e^-10	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7041948	2L_7041948_SNP [dm3] 2L_7041948_SNP [dm6]	C	T	7.793e^-14	5.087e^-10	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	895175	2L_895175_SNP [dm3] 2L_895175_SNP [dm6]	A	G	7.973e^-14	5.168e^-10	INTERGENIC
2L	949647	2L_949647_SNP [dm3] 2L_949647_SNP [dm6]	A	G	7.973e^-14	5.168e^-10	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10352614	2L_10352614_SNP [dm3] 2L_10352614_SNP [dm6]	G	T	8.053e^-14	5.202e^-10	UPSTREAM CG34367 INTRON CG34367
2L	9795103	2L_9795103_SNP [dm3] 2L_9795103_SNP [dm6]	G	A	8.105e^-14	5.218e^-10	UTR_3_PRIME nAChRalpha6
2L	1674912	2L_1674912_SNP [dm3] 2L_1674912_SNP [dm6]	G	T	8.318e^-14	5.336e^-10	INTRON chinmo
2L	7076272	2L_7076272_SNP [dm3] 2L_7076272_SNP [dm6]	C	G	8.543e^-14	5.462e^-10	INTRON Pvf2	TF binding site mE1_TFBS_cad
3R	10771847	3R_10771847_SNP [dm3] 3R_14946125_SNP [dm6]	C	T	8.757e^-14	5.580e^-10	INTERGENIC
2L	10020869	2L_10020869_SNP [dm3] 2L_10020869_SNP [dm6]	G	A	9.151e^-14	5.811e^-10	INTERGENIC
2L	6978117	2L_6978117_SNP [dm3] 2L_6978117_SNP [dm6]	G	A	9.280e^-14	5.873e^-10	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7046158	2L_7046158_SNP [dm3] 2L_7046158_SNP [dm6]	T	G	9.553e^-14	6.025e^-10	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6817494	2L_6817494_SNP [dm3] 2L_6817494_SNP [dm6]	T	G	1.058e^-13	6.652e^-10	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9756389	2L_9756389_SNP [dm3] 2L_9756389_SNP [dm6]	T	G	1.064e^-13	6.662e^-10	INTERGENIC
2L	10516999	2L_10516999_SNP [dm3] 2L_10516999_SNP [dm6]	A	T	1.109e^-13	6.921e^-10	UTR_5_PRIME Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	1433205	2L_1433205_SNP [dm3] 2L_1433205_SNP [dm6]	T	C	1.162e^-13	7.214e^-10	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	6828223	2L_6828223_SNP [dm3] 2L_6828223_SNP [dm6]	T	A	1.163e^-13	7.214e^-10	INTRON sens-2	TF binding site mE1_TFBS_cad
3R	9875116	3R_9875116_SNP [dm3] 3R_14049394_SNP [dm6]	G	T	1.178e^-13	7.284e^-10	INTERGENIC
2R	11954419	2R_11954419_INS [dm3] 2R_16066914_INS [dm6]	A	AA	1.222e^-13	7.528e^-10	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10494960	2L_10494960_SNP [dm3] 2L_10494960_SNP [dm6]	G	A	1.275e^-13	7.812e^-10	SYNONYMOUS_CODING Myo31DF
2L	921031	2L_921031_SNP [dm3] 2L_921031_SNP [dm6]	G	A	1.278e^-13	7.812e^-10	INTERGENIC
2L	1316297	2L_1316297_SNP [dm3] 2L_1316297_SNP [dm6]	G	A	1.281e^-13	7.812e^-10	INTERGENIC
2L	6960775	2L_6960775_SNP [dm3] 2L_6960775_SNP [dm6]	A	C	1.344e^-13	8.170e^-10	NON_SYNONYMOUS_CODING CG10399 UPSTREAM Atac1 DOWNSTREAM sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10641976	3R_10641976_SNP [dm3] 3R_14816254_SNP [dm6]	G	A	1.383e^-13	8.381e^-10	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	7077660	2L_7077660_INS [dm3] 2L_7077660_INS [dm6]	C	CT	1.409e^-13	8.494e^-10	INTRON Pvf2
2L	17403386	2L_17403386_SNP [dm3] 2L_17403386_SNP [dm6]	T	G	1.411e^-13	8.494e^-10	INTRON CLIP-190
2L	856754	2L_856754_SNP [dm3] 2L_856754_SNP [dm6]	A	G	1.473e^-13	8.811e^-10	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11328291	2L_11328291_SNP [dm3] 2L_11328291_SNP [dm6]	C	G	1.473e^-13	8.811e^-10	INTERGENIC
3R	21022288	3R_21022288_SNP [dm3] 3R_25196566_SNP [dm6]	A	G	1.494e^-13	8.908e^-10	DOWNSTREAM CG13653 INTERGENIC
2L	10352408	2L_10352408_SNP [dm3] 2L_10352408_SNP [dm6]	T	G	1.611e^-13	9.578e^-10	UPSTREAM CG34367 INTRON CG34367
2L	6936974	2L_6936974_SNP [dm3] 2L_6936974_SNP [dm6]	C	A	1.687e^-13	9.994e^-10	INTRON CG18304
2L	10498759	2L_10498759_SNP [dm3] 2L_10498759_SNP [dm6]	G	A	1.696e^-13	9.998e^-10	INTRON Myo31DF
2L	10410904	2L_10410904_SNP [dm3] 2L_10410904_SNP [dm6]	C	T	1.698e^-13	9.998e^-10	SYNONYMOUS_CODING CG5355 DOWNSTREAM RpS27A
2L	1215043	2L_1215043_SNP [dm3] 2L_1215043_SNP [dm6]	T	G	1.804e^-13	1.059e^-9	EXON CR45346
2L	7133494	2L_7133494_SNP [dm3] 2L_7133494_SNP [dm6]	G	T	1.881e^-13	1.100e^-9	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10296546	3R_10296546_SNP [dm3] 3R_14470824_SNP [dm6]	A	T	1.891e^-13	1.103e^-9	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11544440	2R_11544440_SNP [dm3] 2R_15656935_SNP [dm6]	G	A	2.034e^-13	1.181e^-9	UTR_3_PRIME CG42524 UPSTREAM mir-278 DOWNSTREAM fus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10451509	2L_10451509_SNP [dm3] 2L_10451509_SNP [dm6]	G	C	2.044e^-13	1.181e^-9	SYNONYMOUS_CODING ppk10
2L	10516862	2L_10516862_SNP [dm3] 2L_10516862_SNP [dm6]	C	T	2.044e^-13	1.181e^-9	UTR_5_PRIME Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	10384519	2L_10384519_SNP [dm3] 2L_10384519_SNP [dm6]	T	C	2.159e^-13	1.240e^-9	SYNONYMOUS_CODING CG5096 DOWNSTREAM cdc2
2L	10385598	2L_10385598_SNP [dm3] 2L_10385598_SNP [dm6]	A	G	2.159e^-13	1.240e^-9	SYNONYMOUS_CODING cdc2 DOWNSTREAM CG5096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1867166	2L_1867166_SNP [dm3] 2L_1867166_SNP [dm6]	A	T	2.198e^-13	1.254e^-9	SYNONYMOUS_CODING CG31663
2L	1867226	2L_1867226_SNP [dm3] 2L_1867226_SNP [dm6]	G	A	2.198e^-13	1.254e^-9	SYNONYMOUS_CODING CG31663
2L	7104807	2L_7104807_SNP [dm3] 2L_7104807_SNP [dm6]	G	T	2.275e^-13	1.295e^-9	INTRON Pvf3
2L	636342	2L_636342_SNP [dm3] 2L_636342_SNP [dm6]	A	G	2.357e^-13	1.333e^-9	INTERGENIC
2L	8619033	2L_8619033_INS [dm3] 2L_8619033_INS [dm6]	A	AAA	2.357e^-13	1.333e^-9	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	1675373	2L_1675373_SNP [dm3] 2L_1675373_SNP [dm6]	G	A	2.370e^-13	1.336e^-9	INTRON chinmo
X	3359597	X_3359597_SNP [dm3] X_3465564_SNP [dm6]	G	T	2.381e^-13	1.338e^-9	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	10255470	2L_10255470_SNP [dm3] 2L_10255470_SNP [dm6]	T	G	2.422e^-13	1.357e^-9	DOWNSTREAM Ror & 1 other INTRON CG5676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	1693311	2L_1693311_SNP [dm3] 2L_1693311_SNP [dm6]	C	T	2.861e^-13	1.599e^-9	INTRON chinmo
2L	5349731	2L_5349731_SNP [dm3] 2L_5349731_SNP [dm6]	A	G	3.048e^-13	1.698e^-9	INTRON nompC
2L	10382426	2L_10382426_SNP [dm3] 2L_10382426_SNP [dm6]	C	T	3.515e^-13	1.952e^-9	SYNONYMOUS_CODING CG5096 UTR_3_PRIME gny DOWNSTREAM gny	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	7104805	2L_7104805_SNP [dm3] 2L_7104805_SNP [dm6]	A	G	3.636e^-13	2.007e^-9	INTRON Pvf3
2L	7104808	2L_7104808_DEL [dm3] 2L_7104808_DEL [dm6]	AGAACATACTAATGTAGAAA...	A	3.636e^-13	2.007e^-9	INTRON Pvf3
2L	2491473	2L_2491473_SNP [dm3] 2L_2491473_SNP [dm6]	C	G	4.167e^-13	2.293e^-9	INTRON Slh	enhancer FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10451368	2L_10451368_SNP [dm3] 2L_10451368_SNP [dm6]	G	A	4.223e^-13	2.311e^-9	SYNONYMOUS_CODING ppk10
2L	10454549	2L_10454549_SNP [dm3] 2L_10454549_SNP [dm6]	C	T	4.223e^-13	2.311e^-9	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10418460	2L_10418460_SNP [dm3] 2L_10418460_SNP [dm6]	A	T	4.247e^-13	2.317e^-9	UTR_3_PRIME Klp31E UPSTREAM RfC3
X	3022570	X_3022570_SNP [dm3] X_3128537_SNP [dm6]	T	A	4.345e^-13	2.364e^-9	UPSTREAM kirre INTRON kirre
2L	9594643	2L_9594643_SNP [dm3] 2L_9594643_SNP [dm6]	C	T	4.365e^-13	2.367e^-9	INTERGENIC	regulatory region REDfly_CRMs
2L	10007518	2L_10007518_SNP [dm3] 2L_10007518_SNP [dm6]	G	T	5.180e^-13	2.802e^-9	INTRON CG4747
2L	9656667	2L_9656667_SNP [dm3] 2L_9656667_SNP [dm6]	C	A	6.336e^-13	3.417e^-9	NON_SYNONYMOUS_CODING CG33299 DOWNSTREAM Apoltp INTRON CG33299
3L	2289450	3L_2289450_SNP [dm3] 3L_2289450_SNP [dm6]	G	T	6.691e^-13	3.587e^-9	INTRON MsR2
3L	2292972	3L_2292972_SNP [dm3] 3L_2292972_SNP [dm6]	A	T	6.691e^-13	3.587e^-9	INTRON MsR2
3R	10132122	3R_10132122_SNP [dm3] 3R_14306400_SNP [dm6]	G	T	7.123e^-13	3.790e^-9	INTRON su_Hw_
3R	10132151	3R_10132151_SNP [dm3] 3R_14306429_SNP [dm6]	T	A	7.123e^-13	3.790e^-9	SYNONYMOUS_CODING su_Hw_
2L	2580079	2L_2580079_SNP [dm3] 2L_2580079_SNP [dm6]	A	C	7.170e^-13	3.790e^-9	UPSTREAM Arpc5 & 1 other DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2580189	2L_2580189_SNP [dm3] 2L_2580189_SNP [dm6]	G	A	7.170e^-13	3.790e^-9	UPSTREAM Arpc5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	2580452	2L_2580452_SNP [dm3] 2L_2580452_SNP [dm6]	G	A	7.170e^-13	3.790e^-9	SYNONYMOUS_CODING Arpc5 UPSTREAM CG3214 DOWNSTREAM Drp1	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	5407736	3L_5407736_SNP [dm3] 3L_5414636_SNP [dm6]	G	A	7.361e^-13	3.880e^-9	INTERGENIC
3R	15411738	3R_15411738_SNP [dm3] 3R_19586016_SNP [dm6]	C	T	1.009e^-12	5.273e^-9	SYNONYMOUS_CODING Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15411749	3R_15411749_SNP [dm3] 3R_19586027_SNP [dm6]	A	T	1.009e^-12	5.273e^-9	NON_SYNONYMOUS_CODING Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15413527	3R_15413527_SNP [dm3] 3R_19587805_SNP [dm6]	T	C	1.009e^-12	5.273e^-9	INTRON Dys
2R	20104915	2R_20104915_DEL [dm3] 2R_24217392_DEL [dm6]	CG	C	1.020e^-12	5.318e^-9	INTRON CG30419
2L	10466503	2L_10466503_SNP [dm3] 2L_10466503_SNP [dm6]	A	T	1.062e^-12	5.517e^-9	INTRON RluA-1
3L	2289771	3L_2289771_SNP [dm3] 3L_2289771_SNP [dm6]	T	A	1.073e^-12	5.562e^-9	INTRON MsR2
3R	9837175	3R_9837175_SNP [dm3] 3R_14011453_SNP [dm6]	G	T	1.102e^-12	5.697e^-9	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	7043487	2L_7043487_SNP [dm3] 2L_7043487_SNP [dm6]	A	G	1.289e^-12	6.641e^-9	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2813002	2L_2813002_SNP [dm3] 2L_2813002_SNP [dm6]	C	G	1.305e^-12	6.709e^-9	SYNONYMOUS_CODING CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	23590834	3L_23590834_SNP [dm3] 3L_23597734_SNP [dm6]	A	C	1.573e^-12	8.064e^-9	INTRON AGO3	transposable element FlyBase
2L	595121	2L_595121_DEL [dm3] 2L_595121_DEL [dm6]	TT	T	1.731e^-12	8.846e^-9	UPSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6985163	3L_6985163_SNP [dm3] 3L_6992063_SNP [dm6]	G	C	2.112e^-12	1.077e^-8	INTRON bin
2L	9082157	2L_9082157_SNP [dm3] 2L_9082157_SNP [dm6]	T	G	2.698e^-12	1.372e^-8	INTERGENIC
2L	11187234	2L_11187234_SNP [dm3] 2L_11187234_SNP [dm6]	A	T	2.957e^-12	1.499e^-8	INTRON Ca-beta
3L	373255	3L_373255_SNP [dm3] 3L_373255_SNP [dm6]	C	A	3.317e^-12	1.677e^-8	INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	19881136	2L_19881136_SNP [dm3] 2L_19881136_SNP [dm6]	T	A	3.344e^-12	1.686e^-8	INTRON sick
3R	22863883	3R_22863883_SNP [dm3] 3R_27038161_SNP [dm6]	C	A	3.891e^-12	1.957e^-8	INTRON RYa-R
2L	1930472	2L_1930472_SNP [dm3] 2L_1930472_SNP [dm6]	T	C	4.221e^-12	2.117e^-8	INTRON CG7337
X	15391163	X_15391163_INS [dm3] X_15497130_INS [dm6]	A	ATCATATA	4.596e^-12	2.292e^-8	DOWNSTREAM CR44888 INTRON Gmap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	15391168	X_15391168_INS [dm3] X_15497135_INS [dm6]	C	CC	4.596e^-12	2.292e^-8	DOWNSTREAM CR44888 INTRON Gmap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	7551777	2L_7551777_SNP [dm3] 2L_7551777_SNP [dm6]	C	T	4.803e^-12	2.389e^-8	INTRON RapGAP1
2R	18146342	2R_18146342_SNP [dm3] 2R_22258837_SNP [dm6]	T	C	6.030e^-12	2.992e^-8	INTRON dve
X	1054934	X_1054934_SNP [dm3] X_1160901_SNP [dm6]	G	C	6.371e^-12	3.152e^-8	INTRON eIF4E-7
2R	11204433	2R_11204433_SNP [dm3] 2R_15316928_SNP [dm6]	G	A	6.661e^-12	3.287e^-8	SYNONYMOUS_CODING mus210 DOWNSTREAM CG8155	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9841797	2L_9841797_SNP [dm3] 2L_9841797_SNP [dm6]	A	C	7.039e^-12	3.465e^-8	INTRON nAChRalpha6
3L	2294246	3L_2294246_SNP [dm3] 3L_2294246_SNP [dm6]	C	A	7.621e^-12	3.741e^-8	INTRON MsR2
2R	18146337	2R_18146337_DEL [dm3] 2R_22258832_DEL [dm6]	TG	T	8.759e^-12	4.288e^-8	INTRON dve
2R	15909036	2R_15909036_SNP [dm3] 2R_20021531_SNP [dm6]	C	A	9.884e^-12	4.827e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	849362	3L_849362_SNP [dm3] 3L_849362_SNP [dm6]	A	C	1.204e^-11	5.865e^-8	INTRON CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5794532	3L_5794532_SNP [dm3] 3L_5801432_SNP [dm6]	G	A	1.425e^-11	6.923e^-8	INTRON S6k	TF binding site mE1_TFBS_cad
2L	19964003	2L_19964003_SNP [dm3] 2L_19964003_SNP [dm6]	G	T	1.455e^-11	7.047e^-8	UPSTREAM CG10680 DOWNSTREAM CR45701 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20948154	2L_20948154_SNP [dm3] 2L_20948154_SNP [dm6]	G	A	1.630e^-11	7.877e^-8	EXON CR44606
2L	10020247	2L_10020247_SNP [dm3] 2L_10020247_SNP [dm6]	T	G	1.654e^-11	7.970e^-8	INTERGENIC
2L	11379964	2L_11379964_SNP [dm3] 2L_11379964_SNP [dm6]	G	A	1.683e^-11	8.090e^-8	INTERGENIC	regulatory region REDfly_CRMs
2L	12873706	2L_12873706_SNP [dm3] 2L_12873706_SNP [dm6]	G	A	1.801e^-11	8.636e^-8	INTERGENIC
3L	15662473	3L_15662473_SNP [dm3] 3L_15669373_SNP [dm6]	A	T	1.846e^-11	8.830e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20419604	2L_20419604_SNP [dm3] 2L_20419604_SNP [dm6]	T	C	2.161e^-11	1.031e^-7	UPSTREAM snoRNA:Psi18S-640d & 2 others DOWNSTREAM snoRNA:Psi18S-640a & 6 others INTRON Arpc2
2L	7491734	2L_7491734_SNP [dm3] 2L_7491734_SNP [dm6]	A	T	2.613e^-11	1.237e^-7	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	7491786	2L_7491786_INS [dm3] 2L_7491786_INS [dm6]	C	CAA	2.613e^-11	1.237e^-7	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	7491822	2L_7491822_SNP [dm3] 2L_7491822_SNP [dm6]	G	T	2.613e^-11	1.237e^-7	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	13333896	3L_13333896_SNP [dm3] 3L_13340796_SNP [dm6]	G	C	3.035e^-11	1.433e^-7	INTERGENIC
2L	7701220	2L_7701220_SNP [dm3] 2L_7701220_SNP [dm6]	T	A	3.231e^-11	1.522e^-7	INTRON Tep2	TF binding site mE1_TFBS_Trl
3R	23274343	3R_23274343_SNP [dm3] 3R_27448621_SNP [dm6]	G	T	4.141e^-11	1.946e^-7	INTERGENIC
3L	15414047	3L_15414047_SNP [dm3] 3L_15420947_SNP [dm6]	G	A	5.053e^-11	2.368e^-7	INTERGENIC
3L	18848580	3L_18848580_SNP [dm3] 3L_18855480_SNP [dm6]	T	G	5.912e^-11	2.757e^-7	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18848581	3L_18848581_SNP [dm3] 3L_18855481_SNP [dm6]	G	T	5.912e^-11	2.757e^-7	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13393391	3L_13393391_SNP [dm3] 3L_13400291_SNP [dm6]	C	A	6.315e^-11	2.937e^-7	NON_SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5213667	2L_5213667_SNP [dm3] 2L_5213667_SNP [dm6]	G	A	6.558e^-11	3.043e^-7	INTRON CG7742	TF binding site mE1_TFBS_cad
2L	16767871	2L_16767871_SNP [dm3] 2L_16767871_SNP [dm6]	G	A	6.751e^-11	3.125e^-7	UTR_5_PRIME Mhc UPSTREAM Mhc INTRON Mhc	regulatory region REDfly_CRMs
2L	4874754	2L_4874754_SNP [dm3] 2L_4874754_SNP [dm6]	T	C	6.895e^-11	3.183e^-7	UTR_3_PRIME pog INTRON pog
2L	4377354	2L_4377354_SNP [dm3] 2L_4377354_SNP [dm6]	C	T	7.552e^-11	3.469e^-7	INTRON Traf4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	4409767	2L_4409767_SNP [dm3] 2L_4409767_SNP [dm6]	G	A	7.552e^-11	3.469e^-7	INTRON CG15431
2L	16778897	2L_16778897_SNP [dm3] 2L_16778897_SNP [dm6]	C	T	7.872e^-11	3.607e^-7	INTRON Mhc
3L	7358388	3L_7358388_SNP [dm3] 3L_7365288_SNP [dm6]	C	A	8.797e^-11	4.021e^-7	SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sec63 INTRON Sh3beta	TF binding site BDTNP1_TFBS_dl
3L	10856824	3L_10856824_SNP [dm3] 3L_10863724_SNP [dm6]	A	G	9.441e^-11	4.305e^-7	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9540664	2L_9540664_SNP [dm3] 2L_9540664_SNP [dm6]	T	C	9.782e^-11	4.450e^-7	SYNONYMOUS_CODING CG17855 DOWNSTREAM Oatp30B	TF binding site mE1_TFBS_bab1
2L	16778158	2L_16778158_INS [dm3] 2L_16778158_INS [dm6]	T	TTCT	1.017e^-10	4.602e^-7	INTRON Mhc
2L	16778165	2L_16778165_SNP [dm3] 2L_16778165_SNP [dm6]	A	C	1.017e^-10	4.602e^-7	INTRON Mhc
2L	16503514	2L_16503514_SNP [dm3] 2L_16503514_SNP [dm6]	C	G	1.052e^-10	4.732e^-7	INTRON Tpr2
2L	7690322	2L_7690322_SNP [dm3] 2L_7690322_SNP [dm6]	G	A	1.053e^-10	4.732e^-7	SYNONYMOUS_CODING CG18585 DOWNSTREAM Myo28B1 & 1 other	TF binding site mE1_TFBS_HSA
2L	7690331	2L_7690331_SNP [dm3] 2L_7690331_SNP [dm6]	G	A	1.053e^-10	4.732e^-7	SYNONYMOUS_CODING CG18585 DOWNSTREAM Myo28B1 & 1 other
3L	1347258	3L_1347258_DEL [dm3] 3L_1347258_DEL [dm6]	AGCCAT	A	1.079e^-10	4.838e^-7	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6991828	3R_6991828_SNP [dm3] 3R_11166106_SNP [dm6]	T	A	1.115e^-10	4.988e^-7	UPSTREAM Ugt86Dg DOWNSTREAM Ugt86De INTERGENIC
2R	11987078	2R_11987078_SNP [dm3] 2R_16099573_SNP [dm6]	G	C	1.170e^-10	5.220e^-7	NON_SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	7064426	X_7064426_SNP [dm3] X_7170393_SNP [dm6]	G	C	1.200e^-10	5.330e^-7	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8704777	X_8704777_SNP [dm3] X_8810744_SNP [dm6]	T	C	1.200e^-10	5.330e^-7	INTERGENIC
2R	4509928	2R_4509928_SNP [dm3] 2R_8622423_SNP [dm6]	G	T	1.219e^-10	5.398e^-7	NON_SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10630481	2R_10630481_SNP [dm3] 2R_14742976_SNP [dm6]	A	G	1.319e^-10	5.735e^-7	INTRON CG12858	TF binding site mE1_TFBS_cad
2R	10630502	2R_10630502_DEL [dm3] 2R_14742997_DEL [dm6]	TTGAAGA	CCT	1.319e^-10	5.735e^-7	INTRON CG12858	TF binding site mE1_TFBS_cad
3L	3562041	3L_3562041_SNP [dm3] 3L_3562041_SNP [dm6]	G	T	1.319e^-10	5.735e^-7	INTRON Eip63E
3L	3562242	3L_3562242_SNP [dm3] 3L_3562242_SNP [dm6]	C	A	1.319e^-10	5.735e^-7	INTRON Eip63E
3R	17793399	3R_17793399_SNP [dm3] 3R_21967677_SNP [dm6]	A	G	1.319e^-10	5.735e^-7	INTRON Eip93F
3R	9718136	3R_9718136_SNP [dm3] 3R_13892414_SNP [dm6]	T	C	1.319e^-10	5.735e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11973847	X_11973847_SNP [dm3] X_12079814_SNP [dm6]	G	A	1.319e^-10	5.735e^-7	INTRON CR43960 & 1 other
X	2310301	X_2310301_SNP [dm3] X_2416268_SNP [dm6]	T	G	1.319e^-10	5.735e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	2644583	2L_2644583_SNP [dm3] 2L_2644583_SNP [dm6]	A	C	1.381e^-10	5.991e^-7	INTERGENIC
2R	6327426	2R_6327426_SNP [dm3] 2R_10439921_SNP [dm6]	T	A	1.414e^-10	6.119e^-7	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	8493549	2R_8493549_SNP [dm3] 2R_12606044_SNP [dm6]	A	C	1.485e^-10	6.408e^-7	INTRON Amph
2L	2644443	2L_2644443_SNP [dm3] 2L_2644443_SNP [dm6]	G	T	1.562e^-10	6.710e^-7	INTERGENIC
2L	5193648	2L_5193648_SNP [dm3] 2L_5193648_SNP [dm6]	T	C	1.562e^-10	6.710e^-7	SYNONYMOUS_CODING Msp300 DOWNSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8644987	3L_8644987_SNP [dm3] 3L_8651887_SNP [dm6]	G	T	1.574e^-10	6.732e^-7	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8644991	3L_8644991_SNP [dm3] 3L_8651891_SNP [dm6]	A	T	1.574e^-10	6.732e^-7	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14329319	3R_14329319_SNP [dm3] 3R_18503597_SNP [dm6]	A	T	1.666e^-10	7.110e^-7	INTRON fru
3L	16494487	3L_16494487_SNP [dm3] 3L_16501387_SNP [dm6]	C	G	1.670e^-10	7.110e^-7	DOWNSTREAM st & 1 other INTRON CG43373
X	14520071	X_14520071_SNP [dm3] X_14626038_SNP [dm6]	T	C	1.793e^-10	7.618e^-7	INTRON NetA
3R	26587101	3R_26587101_SNP [dm3] 3R_30761379_SNP [dm6]	A	G	1.826e^-10	7.737e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	17882748	X_17882748_SNP [dm3] X_17988715_SNP [dm6]	C	T	1.834e^-10	7.756e^-7	INTRON Sh
2R	12163013	2R_12163013_SNP [dm3] 2R_16275508_SNP [dm6]	C	A	1.906e^-10	8.042e^-7	NON_SYNONYMOUS_CODING CG33017
2L	7715808	2L_7715808_SNP [dm3] 2L_7715808_SNP [dm6]	T	A	1.942e^-10	8.173e^-7	SPLICE_SITE_REGION CG33296 INTRON CG33296	TF binding site mE1_TFBS_inv
2L	1730148	2L_1730148_SNP [dm3] 2L_1730148_SNP [dm6]	G	T	2.062e^-10	8.659e^-7	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20297305	2L_20297305_SNP [dm3] 2L_20297305_SNP [dm6]	A	C	2.114e^-10	8.840e^-7	UPSTREAM CR43414 INTERGENIC
2L	20297306	2L_20297306_SNP [dm3] 2L_20297306_SNP [dm6]	T	G	2.114e^-10	8.840e^-7	UPSTREAM CR43414 INTERGENIC
3L	16965346	3L_16965346_SNP [dm3] 3L_16972246_SNP [dm6]	T	A	2.187e^-10	9.107e^-7	INTRON Exn
2L	4409720	2L_4409720_INS [dm3] 2L_4409720_INS [dm6]	A	AC	2.188e^-10	9.107e^-7	INTRON CG15431
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	2.195e^-10	9.114e^-7	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18340894	X_18340894_SNP [dm3] X_18446861_SNP [dm6]	G	A	2.207e^-10	9.144e^-7	INTRON CG32547	TF binding site mE1_TFBS_chinmo
2L	22075295	2L_22075295_SNP [dm3] 2L_22075295_SNP [dm6]	A	T	2.280e^-10	9.416e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1387711	3L_1387711_SNP [dm3] 3L_1387711_SNP [dm6]	G	C	2.284e^-10	9.416e^-7	DOWNSTREAM ru INTRON Ptp61F
2L	4408451	2L_4408451_SNP [dm3] 2L_4408451_SNP [dm6]	A	C	2.288e^-10	9.416e^-7	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10779335	3L_10779335_SNP [dm3] 3L_10786235_SNP [dm6]	G	A	2.326e^-10	9.540e^-7	DOWNSTREAM CR44544 INTERGENIC
2L	6320453	2L_6320453_SNP [dm3] 2L_6320453_SNP [dm6]	A	G	2.328e^-10	9.540e^-7	INTRON Ddr
3L	16494472	3L_16494472_SNP [dm3] 3L_16501372_SNP [dm6]	T	C	2.341e^-10	9.551e^-7	DOWNSTREAM st & 1 other INTRON CG43373
2R	8880423	2R_8880423_SNP [dm3] 2R_12992918_SNP [dm6]	A	G	2.361e^-10	9.551e^-7	UPSTREAM CG33798 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8880441	2R_8880441_SNP [dm3] 2R_12992936_SNP [dm6]	A	C	2.361e^-10	9.551e^-7	UPSTREAM CG33798 INTERGENIC
2R	8880451	2R_8880451_SNP [dm3] 2R_12992946_SNP [dm6]	C	T	2.361e^-10	9.551e^-7	UPSTREAM CG33798 INTERGENIC
2R	8880527	2R_8880527_SNP [dm3] 2R_12993022_SNP [dm6]	T	A	2.361e^-10	9.551e^-7	UPSTREAM CG33798 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10259573	3L_10259573_SNP [dm3] 3L_10266473_SNP [dm6]	T	C	2.361e^-10	9.551e^-7	SYNONYMOUS_CODING can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5193994	3L_5193994_INS [dm3] 3L_5200894_INS [dm6]	G	GTCTGTG	2.385e^-10	9.625e^-7	INTRON shep
X	16417454	X_16417454_SNP [dm3] X_16523421_SNP [dm6]	A	G	2.420e^-10	9.747e^-7	NON_SYNONYMOUS_CODING Cnx14D INTRON para
2L	8648309	2L_8648309_SNP [dm3] 2L_8648309_SNP [dm6]	A	G	2.519e^-10	1.008e^-6	INTRON Sema-1a
2L	8648326	2L_8648326_SNP [dm3] 2L_8648326_SNP [dm6]	C	T	2.519e^-10	1.008e^-6	INTRON Sema-1a
3R	10290268	3R_10290268_SNP [dm3] 3R_14464546_SNP [dm6]	T	G	2.519e^-10	1.008e^-6	INTRON cv-c
3R	13972928	3R_13972928_INS [dm3] 3R_18147206_INS [dm6]	C	CTG	2.537e^-10	1.013e^-6	INTERGENIC
3R	20097424	3R_20097424_INS [dm3] 3R_24271702_INS [dm6]	C	CAC	2.550e^-10	1.014e^-6	UPSTREAM jar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20685682	3R_20685682_SNP [dm3] 3R_24859960_SNP [dm6]	A	T	2.550e^-10	1.014e^-6	UTR_3_PRIME CG13639 UPSTREAM ppk22
3L	10802024	3L_10802024_SNP [dm3] 3L_10808924_SNP [dm6]	G	A	2.612e^-10	1.036e^-6	INTERGENIC
2L	8696366	2L_8696366_SNP [dm3] 2L_8696366_SNP [dm6]	C	G	2.621e^-10	1.038e^-6	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	9896967	3L_9896967_DEL [dm3] 3L_9903867_DEL [dm6]	ATTTTAAGTTCTA...	A	2.686e^-10	1.061e^-6	DOWNSTREAM nudE INTERGENIC
2L	1990530	2L_1990530_SNP [dm3] 2L_1990530_SNP [dm6]	C	T	2.772e^-10	1.093e^-6	DOWNSTREAM Obp22a EXON CR42874
2R	7891465	2R_7891465_SNP [dm3] 2R_12003960_SNP [dm6]	T	C	2.855e^-10	1.121e^-6	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_chinmo
3R	22864273	3R_22864273_SNP [dm3] 3R_27038551_SNP [dm6]	G	A	2.856e^-10	1.121e^-6	INTRON RYa-R
X	13268529	X_13268529_SNP [dm3] X_13374496_SNP [dm6]	C	T	2.936e^-10	1.150e^-6	INTRON CG1640	TF binding site BDTNP1_TFBS_dl
X	3373287	X_3373287_SNP [dm3] X_3479254_SNP [dm6]	A	G	3.038e^-10	1.186e^-6	SYNONYMOUS_CODING CG10804 INTRON CR44999	TF binding site mE1_TFBS_cad
X	18340886	X_18340886_SNP [dm3] X_18446853_SNP [dm6]	C	A	3.041e^-10	1.186e^-6	INTRON CG32547	TF binding site mE1_TFBS_chinmo
2R	18379433	2R_18379433_SNP [dm3] 2R_22491928_SNP [dm6]	T	C	3.078e^-10	1.198e^-6	UTR_3_PRIME CG4554 UPSTREAM CG4610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12557124	3L_12557124_SNP [dm3] 3L_12564024_SNP [dm6]	T	A	3.085e^-10	1.198e^-6	INTRON sowah
3L	16494585	3L_16494585_SNP [dm3] 3L_16501485_SNP [dm6]	C	A	3.113e^-10	1.207e^-6	DOWNSTREAM CG43373 INTRON CG43373
2L	19822021	2L_19822021_SNP [dm3] 2L_19822021_SNP [dm6]	A	G	3.201e^-10	1.238e^-6	INTRON sick
2L	4376923	2L_4376923_SNP [dm3] 2L_4376923_SNP [dm6]	G	T	3.233e^-10	1.248e^-6	INTRON Traf4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2299119	3L_2299119_SNP [dm3] 3L_2299119_SNP [dm6]	A	G	3.245e^-10	1.250e^-6	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1762509	2L_1762509_SNP [dm3] 2L_1762509_SNP [dm6]	T	A	3.272e^-10	1.257e^-6	INTERGENIC
2R	8879901	2R_8879901_SNP [dm3] 2R_12992396_SNP [dm6]	T	A	3.277e^-10	1.257e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19228436	2R_19228436_SNP [dm3] 2R_23340913_SNP [dm6]	T	C	3.320e^-10	1.269e^-6	INTERGENIC
2R	10084330	2R_10084330_SNP [dm3] 2R_14196825_SNP [dm6]	G	A	3.336e^-10	1.269e^-6	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10084417	2R_10084417_SNP [dm3] 2R_14196912_SNP [dm6]	C	T	3.336e^-10	1.269e^-6	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_sens
2R	10084540	2R_10084540_SNP [dm3] 2R_14197035_SNP [dm6]	T	A	3.336e^-10	1.269e^-6	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_sens
2L	9370552	2L_9370552_SNP [dm3] 2L_9370552_SNP [dm6]	G	T	3.440e^-10	1.306e^-6	UTR_3_PRIME Shawl
3L	13298393	3L_13298393_SNP [dm3] 3L_13305293_SNP [dm6]	C	T	3.468e^-10	1.314e^-6	INTERGENIC
2R	10421070	2R_10421070_SNP [dm3] 2R_14533565_SNP [dm6]	C	T	3.765e^-10	1.424e^-6	INTRON ttv
3R	17792038	3R_17792038_SNP [dm3] 3R_21966316_SNP [dm6]	T	C	4.090e^-10	1.543e^-6	INTRON Eip93F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1730254	2L_1730254_SNP [dm3] 2L_1730254_SNP [dm6]	C	T	4.163e^-10	1.565e^-6	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9134218	2L_9134218_SNP [dm3] 2L_9134218_SNP [dm6]	T	C	4.164e^-10	1.565e^-6	INTRON CG32982
2R	15877965	2R_15877965_SNP [dm3] 2R_19990460_SNP [dm6]	G	C	4.298e^-10	1.612e^-6	INTERGENIC
2L	2126207	2L_2126207_DEL [dm3] 2L_2126207_DEL [dm6]	TA	T	4.424e^-10	1.656e^-6	INTERGENIC
2R	4385733	2R_4385733_SNP [dm3] 2R_8498228_SNP [dm6]	T	C	4.456e^-10	1.661e^-6	INTRON mtt
X	14763121	X_14763121_SNP [dm3] X_14869088_SNP [dm6]	C	T	4.465e^-10	1.661e^-6	INTRON Flo2 & 1 other
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	4.465e^-10	1.661e^-6	INTRON Flo2 & 1 other
3L	1477828	3L_1477828_SNP [dm3] 3L_1477828_SNP [dm6]	C	T	4.504e^-10	1.673e^-6	SYNONYMOUS_CODING robl62A INTRON stet
2R	10084542	2R_10084542_SNP [dm3] 2R_14197037_SNP [dm6]	A	G	4.642e^-10	1.720e^-6	NON_SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_sens
2L	19889775	2L_19889775_SNP [dm3] 2L_19889775_SNP [dm6]	C	A	4.697e^-10	1.737e^-6	DOWNSTREAM CG10481 INTRON sick
3R	23499952	3R_23499952_SNP [dm3] 3R_27674230_SNP [dm6]	G	T	4.730e^-10	1.746e^-6	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3L	13298618	3L_13298618_INS [dm3] 3L_13305518_INS [dm6]	GG	TAA	4.745e^-10	1.748e^-6	INTERGENIC
2L	4409919	2L_4409919_INS [dm3] 2L_4409919_INS [dm6]	T	TT	4.814e^-10	1.770e^-6	INTRON CG15431
3L	12569501	3L_12569501_SNP [dm3] 3L_12576401_SNP [dm6]	C	T	4.899e^-10	1.798e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	22585970	3R_22585970_SNP [dm3] 3R_26760248_SNP [dm6]	T	C	4.939e^-10	1.809e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7481411	2L_7481411_SNP [dm3] 2L_7481411_SNP [dm6]	G	A	4.951e^-10	1.810e^-6	SYNONYMOUS_CODING Ziz
3R	13972939	3R_13972939_SNP [dm3] 3R_18147217_SNP [dm6]	C	G	4.971e^-10	1.813e^-6	INTERGENIC
2L	7494976	2L_7494976_SNP [dm3] 2L_7494976_SNP [dm6]	C	T	5.141e^-10	1.872e^-6	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3910752	3L_3910752_SNP [dm3] 3L_3910752_SNP [dm6]	T	A	5.450e^-10	1.980e^-6	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3L	11955554	3L_11955554_SNP [dm3] 3L_11962454_SNP [dm6]	G	A	5.536e^-10	2.008e^-6	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3R	15314491	3R_15314491_SNP [dm3] 3R_19488769_SNP [dm6]	G	A	5.601e^-10	2.027e^-6	DOWNSTREAM CG15025 INTRON Dys
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	5.628e^-10	2.033e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7500872	2L_7500872_SNP [dm3] 2L_7500872_SNP [dm6]	C	T	5.794e^-10	2.089e^-6	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2621570	3L_2621570_SNP [dm3] 3L_2621570_SNP [dm6]	G	A	5.839e^-10	2.098e^-6	INTRON Pxn
2R	10421066	2R_10421066_SNP [dm3] 2R_14533561_SNP [dm6]	A	G	5.847e^-10	2.098e^-6	INTRON ttv
2L	8646618	2L_8646618_SNP [dm3] 2L_8646618_SNP [dm6]	A	T	5.861e^-10	2.098e^-6	INTRON Sema-1a
3L	18848806	3L_18848806_SNP [dm3] 3L_18855706_SNP [dm6]	G	T	5.868e^-10	2.098e^-6	INTERGENIC
3L	9939381	3L_9939381_INS [dm3] 3L_9946281_INS [dm6]	G	GCCCGTTG	5.877e^-10	2.098e^-6	INTRON CG34356
X	14829507	X_14829507_DEL [dm3] X_14935474_DEL [dm6]	ACATATAA	A	5.888e^-10	2.098e^-6	INTRON pdgy
2R	10564906	2R_10564906_SNP [dm3] 2R_14677401_SNP [dm6]	G	T	5.903e^-10	2.100e^-6	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
3R	10301251	3R_10301251_SNP [dm3] 3R_14475529_SNP [dm6]	A	G	6.061e^-10	2.135e^-6	INTRON cv-c
3L	2298819	3L_2298819_SNP [dm3] 3L_2298819_SNP [dm6]	A	T	6.070e^-10	2.135e^-6	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2298832	3L_2298832_SNP [dm3] 3L_2298832_SNP [dm6]	G	A	6.070e^-10	2.135e^-6	NON_SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2298850	3L_2298850_SNP [dm3] 3L_2298850_SNP [dm6]	T	A	6.070e^-10	2.135e^-6	NON_SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15311122	3R_15311122_SNP [dm3] 3R_19485400_SNP [dm6]	T	C	6.070e^-10	2.135e^-6	INTRON Dys
3R	15311947	3R_15311947_SNP [dm3] 3R_19486225_SNP [dm6]	C	T	6.070e^-10	2.135e^-6	UPSTREAM Dys INTRON Dys
3R	18898879	3R_18898879_SNP [dm3] 3R_23073157_SNP [dm6]	C	A	6.081e^-10	2.135e^-6	INTRON CG13830	TF binding site mE1_TFBS_chinmo
2L	5231305	2L_5231305_SNP [dm3] 2L_5231305_SNP [dm6]	T	C	6.143e^-10	2.152e^-6	INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	454290	2R_454290_INS [dm3] 2R_4566785_INS [dm6]	A	ACGAGGTTCATCCAATTTAT...	6.209e^-10	2.168e^-6	INTERGENIC	transposable element FlyBase
3L	6152783	3L_6152783_SNP [dm3] 3L_6159683_SNP [dm6]	T	G	6.210e^-10	2.168e^-6	INTERGENIC
3L	11630857	3L_11630857_SNP [dm3] 3L_11637757_SNP [dm6]	C	T	6.255e^-10	2.179e^-6	INTRON CG32091
3L	13298701	3L_13298701_SNP [dm3] 3L_13305601_SNP [dm6]	T	C	6.299e^-10	2.190e^-6	INTERGENIC
3R	20689134	3R_20689134_SNP [dm3] 3R_24863412_SNP [dm6]	A	T	6.400e^-10	2.219e^-6	SYNONYMOUS_CODING CG7016 DOWNSTREAM CG13641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2991491	2R_2991491_INS [dm3] 2R_7103986_INS [dm6]	A	AT	6.405e^-10	2.219e^-6	INTRON esn
2L	1718594	2L_1718594_DEL [dm3] 2L_1718594_DEL [dm6]	TT	T	6.427e^-10	2.223e^-6	INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	482088	2R_482088_SNP [dm3] 2R_4594583_SNP [dm6]	A	T	6.491e^-10	2.241e^-6	UPSTREAM p120ctn INTERGENIC
3L	14802412	3L_14802412_SNP [dm3] 3L_14809312_SNP [dm6]	A	T	6.523e^-10	2.247e^-6	INTRON CG17839
2R	19228554	2R_19228554_SNP [dm3] 2R_23341031_SNP [dm6]	A	G	6.728e^-10	2.314e^-6	INTERGENIC
3L	18159766	3L_18159766_SNP [dm3] 3L_18166666_SNP [dm6]	C	A	7.002e^-10	2.403e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2592027	2L_2592027_SNP [dm3] 2L_2592027_SNP [dm6]	T	G	7.044e^-10	2.413e^-6	UPSTREAM CG15394 INTRON CG15394
3L	10362752	3L_10362752_SNP [dm3] 3L_10369652_SNP [dm6]	T	C	7.214e^-10	2.467e^-6	INTERGENIC
2L	5222676	2L_5222676_SNP [dm3] 2L_5222676_SNP [dm6]	G	A	7.303e^-10	2.493e^-6	INTRON tkv
3R	10119687	3R_10119687_DEL [dm3] 3R_14293965_DEL [dm6]	TTT	T	7.493e^-10	2.553e^-6	INTRON CG12207
2L	4986344	2L_4986344_SNP [dm3] 2L_4986344_SNP [dm6]	C	T	7.604e^-10	2.584e^-6	NON_SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19374878	2L_19374878_SNP [dm3] 2L_19374878_SNP [dm6]	A	C	7.610e^-10	2.584e^-6	INTERGENIC
3L	9892521	3L_9892521_SNP [dm3] 3L_9899421_SNP [dm6]	A	G	7.692e^-10	2.607e^-6	UPSTREAM CG6707 INTRON nudE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	15314048	3R_15314048_SNP [dm3] 3R_19488326_SNP [dm6]	C	T	7.729e^-10	2.614e^-6	NON_SYNONYMOUS_CODING Dys
2L	7491507	2L_7491507_SNP [dm3] 2L_7491507_SNP [dm6]	A	G	7.801e^-10	2.634e^-6	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7399658	3L_7399658_INS [dm3] 3L_7406558_INS [dm6]	T	TAT	8.082e^-10	2.724e^-6	EXON pncr015:3L
X	8919597	X_8919597_SNP [dm3] X_9025564_SNP [dm6]	C	T	8.164e^-10	2.747e^-6	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
X	6185595	X_6185595_SNP [dm3] X_6291562_SNP [dm6]	T	G	8.193e^-10	2.751e^-6	NON_SYNONYMOUS_CODING CG15896 UPSTREAM Rpt4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15311091	3R_15311091_DEL [dm3] 3R_19485369_DEL [dm6]	AAA	A	8.305e^-10	2.780e^-6	INTRON Dys
3R	10304647	3R_10304647_SNP [dm3] 3R_14478925_SNP [dm6]	A	G	8.309e^-10	2.780e^-6	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	11362982	X_11362982_SNP [dm3] X_11468949_SNP [dm6]	A	G	8.540e^-10	2.852e^-6	INTRON CG43155
2L	9981285	2L_9981285_SNP [dm3] 2L_9981285_SNP [dm6]	G	C	8.584e^-10	2.857e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	9981289	2L_9981289_SNP [dm3] 2L_9981289_SNP [dm6]	C	T	8.584e^-10	2.857e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	21182789	X_21182789_SNP [dm3] X_21311762_SNP [dm6]	T	A	8.809e^-10	2.926e^-6	INTRON CG1801
2R	432161	2R_432161_DEL [dm3] 2R_4544656_DEL [dm6]	CAC	C	8.882e^-10	2.945e^-6	INTERGENIC
3L	2912971	3L_2912971_SNP [dm3] 3L_2912971_SNP [dm6]	G	A	9.052e^-10	2.997e^-6	INTRON Shab
3R	18130071	3R_18130071_SNP [dm3] 3R_22304349_SNP [dm6]	T	A	9.275e^-10	3.065e^-6	UTR_3_PRIME CG7084 DOWNSTREAM CG7084
3L	7400516	3L_7400516_SNP [dm3] 3L_7407416_SNP [dm6]	A	G	9.469e^-10	3.124e^-6	DOWNSTREAM pncr015:3L INTERGENIC
3L	2299620	3L_2299620_INS [dm3] 3L_2299620_INS [dm6]	A	AAA	9.696e^-10	3.181e^-6	INTRON MsR2
3L	3487801	3L_3487801_SNP [dm3] 3L_3487801_SNP [dm6]	C	T	9.728e^-10	3.181e^-6	INTRON CG42324
3R	15410370	3R_15410370_SNP [dm3] 3R_19584648_SNP [dm6]	G	T	9.728e^-10	3.181e^-6	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15415863	3R_15415863_SNP [dm3] 3R_19590141_SNP [dm6]	G	A	9.728e^-10	3.181e^-6	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad
3R	22932687	3R_22932687_SNP [dm3] 3R_27106965_SNP [dm6]	A	G	9.728e^-10	3.181e^-6	UPSTREAM CG6074 INTERGENIC
2L	10393082	2L_10393082_DEL [dm3] 2L_10393082_DEL [dm6]	AGAATCGTTAAGCCA...	A	1.009e^-9	3.293e^-6	UTR_3_PRIME da DOWNSTREAM da & 1 other
2R	10564694	2R_10564694_SNP [dm3] 2R_14677189_SNP [dm6]	A	C	1.044e^-9	3.402e^-6	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
3R	15311346	3R_15311346_SNP [dm3] 3R_19485624_SNP [dm6]	C	T	1.055e^-9	3.431e^-6	SYNONYMOUS_CODING Dys
3R	10831515	3R_10831515_SNP [dm3] 3R_15005793_SNP [dm6]	C	T	1.057e^-9	3.433e^-6	UPSTREAM CR45599 INTERGENIC
2L	7493343	2L_7493343_SNP [dm3] 2L_7493343_SNP [dm6]	G	A	1.081e^-9	3.504e^-6	INTRON Ziz
2R	6323999	2R_6323999_SNP [dm3] 2R_10436494_SNP [dm6]	A	C	1.086e^-9	3.513e^-6	UTR_3_PRIME RanBPM DOWNSTREAM CG12895 & 1 other	TF binding site mE1_TFBS_HSA
3R	16853717	3R_16853717_SNP [dm3] 3R_21027995_SNP [dm6]	C	T	1.129e^-9	3.646e^-6	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	15392181	X_15392181_SNP [dm3] X_15498148_SNP [dm6]	T	A	1.136e^-9	3.660e^-6	UPSTREAM CR44888 & 1 other INTRON Gmap	TF binding site BDTNP1_TFBS_dl
3R	15310704	3R_15310704_SNP [dm3] 3R_19484982_SNP [dm6]	C	A	1.137e^-9	3.660e^-6	INTRON Dys
2L	9370455	2L_9370455_SNP [dm3] 2L_9370455_SNP [dm6]	T	G	1.178e^-9	3.784e^-6	UTR_3_PRIME Shawl
2L	9565086	2L_9565086_SNP [dm3] 2L_9565086_SNP [dm6]	A	G	1.236e^-9	3.963e^-6	UTR_5_PRIME jp INTRON jp
X	7625864	X_7625864_SNP [dm3] X_7731831_SNP [dm6]	G	A	1.240e^-9	3.965e^-6	UTR_3_PRIME Pdp DOWNSTREAM CG12155
X	7625900	X_7625900_SNP [dm3] X_7731867_SNP [dm6]	T	C	1.240e^-9	3.965e^-6	UTR_3_PRIME Pdp DOWNSTREAM CG12155
2L	9507506	2L_9507506_INS [dm3] 2L_9507506_INS [dm6]	A	AAGTGAGTTCGTGGGCAATC...	1.313e^-9	4.175e^-6	INTRON CG33298
2L	9507519	2L_9507519_INS [dm3] 2L_9507519_INS [dm6]	G	GACAG	1.313e^-9	4.175e^-6	INTRON CG33298
2L	9507524	2L_9507524_SNP [dm3] 2L_9507524_SNP [dm6]	G	A	1.313e^-9	4.175e^-6	INTRON CG33298
3R	15408947	3R_15408947_SNP [dm3] 3R_19583225_SNP [dm6]	A	G	1.316e^-9	4.177e^-6	INTRON Dys
3L	12559656	3L_12559656_SNP [dm3] 3L_12566556_SNP [dm6]	C	T	1.320e^-9	4.183e^-6	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15415248	3R_15415248_SNP [dm3] 3R_19589526_SNP [dm6]	T	C	1.338e^-9	4.234e^-6	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15772528	2R_15772528_SNP [dm3] 2R_19885023_SNP [dm6]	G	A	1.371e^-9	4.331e^-6	INTERGENIC
2L	9501296	2L_9501296_SNP [dm3] 2L_9501296_SNP [dm6]	G	A	1.391e^-9	4.387e^-6	INTRON CG33298
3R	20351112	3R_20351112_SNP [dm3] 3R_24525390_SNP [dm6]	A	G	1.406e^-9	4.427e^-6	INTRON CG13618
2R	8879705	2R_8879705_SNP [dm3] 2R_12992200_SNP [dm6]	G	T	1.413e^-9	4.440e^-6	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3970438	3L_3970438_SNP [dm3] 3L_3970438_SNP [dm6]	A	T	1.426e^-9	4.475e^-6	INTERGENIC
3R	22864604	3R_22864604_SNP [dm3] 3R_27038882_SNP [dm6]	G	A	1.488e^-9	4.644e^-6	INTRON RYa-R
3R	22864612	3R_22864612_SNP [dm3] 3R_27038890_SNP [dm6]	T	A	1.488e^-9	4.644e^-6	INTRON RYa-R
3R	22864675	3R_22864675_SNP [dm3] 3R_27038953_SNP [dm6]	C	T	1.488e^-9	4.644e^-6	INTRON RYa-R
2L	7492538	2L_7492538_SNP [dm3] 2L_7492538_SNP [dm6]	T	G	1.498e^-9	4.669e^-6	INTRON Ziz
2L	10291018	2L_10291018_SNP [dm3] 2L_10291018_SNP [dm6]	A	T	1.518e^-9	4.724e^-6	INTRON CG5604	TF binding site BDTNP1_TFBS_twi
3R	10073693	3R_10073693_SNP [dm3] 3R_14247971_SNP [dm6]	G	T	1.548e^-9	4.806e^-6	INTERGENIC
2R	11855147	2R_11855147_SNP [dm3] 2R_15967642_SNP [dm6]	A	G	1.550e^-9	4.806e^-6	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	15311272	3R_15311272_SNP [dm3] 3R_19485550_SNP [dm6]	A	T	1.564e^-9	4.841e^-6	INTRON Dys
2L	6612787	2L_6612787_SNP [dm3] 2L_6612787_SNP [dm6]	G	C	1.574e^-9	4.863e^-6	NON_SYNONYMOUS_CODING CG11050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	1.611e^-9	4.971e^-6	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2L	19954021	2L_19954021_SNP [dm3] 2L_19954021_SNP [dm6]	C	T	1.659e^-9	5.110e^-6	INTRON sick
3L	2835146	3L_2835146_SNP [dm3] 3L_2835146_SNP [dm6]	T	G	1.706e^-9	5.247e^-6	INTRON CG43444
X	9461023	X_9461023_SNP [dm3] X_9566990_SNP [dm6]	A	C	1.731e^-9	5.313e^-6	NON_SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9515245	2L_9515245_SNP [dm3] 2L_9515245_SNP [dm6]	G	T	1.745e^-9	5.350e^-6	INTRON CG33298
2R	13273649	2R_13273649_DEL [dm3] 2R_17386144_DEL [dm6]	CAGCCACC	C	1.830e^-9	5.599e^-6	DOWNSTREAM CR44344 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7495726	2L_7495726_SNP [dm3] 2L_7495726_SNP [dm6]	A	T	1.856e^-9	5.670e^-6	UTR_5_PRIME Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22830783	3R_22830783_SNP [dm3] 3R_27005061_SNP [dm6]	A	T	1.957e^-9	5.969e^-6	DOWNSTREAM CG6295 INTRON RYa-R & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16449945	2L_16449945_SNP [dm3] 2L_16449945_SNP [dm6]	G	A	1.989e^-9	6.055e^-6	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2R	4254720	2R_4254720_SNP [dm3] 2R_8367215_SNP [dm6]	A	G	2.088e^-9	6.347e^-6	UTR_3_PRIME CG18449 UPSTREAM boly INTRON pdm3
2L	1186692	2L_1186692_SNP [dm3] 2L_1186692_SNP [dm6]	G	A	2.166e^-9	6.574e^-6	DOWNSTREAM Tgt INTRON CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10799764	3R_10799764_SNP [dm3] 3R_14974042_SNP [dm6]	G	T	2.294e^-9	6.951e^-6	INTERGENIC
3R	27064040	3R_27064040_DEL [dm3] 3R_31238318_DEL [dm6]	GTGG	G	2.367e^-9	7.152e^-6	INTRON qless
3R	10105414	3R_10105414_INS [dm3] 3R_14279692_INS [dm6]	G	GTG	2.368e^-9	7.152e^-6	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2349242	3L_2349242_SNP [dm3] 3L_2349242_SNP [dm6]	G	A	2.421e^-9	7.301e^-6	INTERGENIC
2L	6166944	2L_6166944_SNP [dm3] 2L_6166944_SNP [dm6]	C	T	2.441e^-9	7.348e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10847152	3L_10847152_SNP [dm3] 3L_10854052_SNP [dm6]	G	C	2.552e^-9	7.669e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16016370	2L_16016370_SNP [dm3] 2L_16016370_SNP [dm6]	T	C	2.568e^-9	7.707e^-6	INTRON beat-Ic
2L	22066505	2L_22066505_SNP [dm3] 2L_22066505_SNP [dm6]	A	T	2.639e^-9	7.907e^-6	UPSTREAM CR31700 INTERGENIC
X	3956275	X_3956275_SNP [dm3] X_4062242_SNP [dm6]	G	A	2.747e^-9	8.181e^-6	INTERGENIC
3R	10623153	3R_10623153_SNP [dm3] 3R_14797431_SNP [dm6]	T	C	2.753e^-9	8.181e^-6	SYNONYMOUS_CODING CG14855
3R	10643806	3R_10643806_SNP [dm3] 3R_14818084_SNP [dm6]	T	G	2.753e^-9	8.181e^-6	SYNONYMOUS_CODING btsz UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10643914	3R_10643914_SNP [dm3] 3R_14818192_SNP [dm6]	A	C	2.753e^-9	8.181e^-6	NON_SYNONYMOUS_CODING btsz UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10644943	3R_10644943_SNP [dm3] 3R_14819221_SNP [dm6]	C	T	2.753e^-9	8.181e^-6	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	7896141	3L_7896141_SNP [dm3] 3L_7903041_SNP [dm6]	C	T	2.769e^-9	8.217e^-6	INTRON pbl	TF binding site BDTNP1_TFBS_twi
2L	5535332	2L_5535332_SNP [dm3] 2L_5535332_SNP [dm6]	C	A	2.832e^-9	8.390e^-6	DOWNSTREAM tomb INTRON Cap-D3
2R	466727	2R_466727_DEL [dm3] 2R_4579222_DEL [dm6]	CC	T	2.837e^-9	8.393e^-6	INTERGENIC
2L	11346386	2L_11346386_SNP [dm3] 2L_11346386_SNP [dm6]	G	A	2.913e^-9	8.601e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11327038	3L_11327038_INS [dm3] 3L_11333938_INS [dm6]	G	GCGAATGGAGAACGG...	2.933e^-9	8.648e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8871302	2R_8871302_SNP [dm3] 2R_12983797_SNP [dm6]	C	T	2.998e^-9	8.825e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22863347	3R_22863347_SNP [dm3] 3R_27037625_SNP [dm6]	G	A	3.043e^-9	8.944e^-6	INTRON RYa-R	TF binding site mE1_TFBS_cad
2L	16205853	2L_16205853_INS [dm3] 2L_16205853_INS [dm6]	A	AACA	3.101e^-9	9.099e^-6	INTERGENIC
2L	17677099	2L_17677099_SNP [dm3] 2L_17677099_SNP [dm6]	A	T	3.109e^-9	9.110e^-6	INTRON CadN
2L	5226862	2L_5226862_SNP [dm3] 2L_5226862_SNP [dm6]	G	T	3.219e^-9	9.416e^-6	INTRON tkv
3R	10311493	3R_10311493_SNP [dm3] 3R_14485771_SNP [dm6]	T	C	3.224e^-9	9.416e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12154706	3R_12154706_SNP [dm3] 3R_16328984_SNP [dm6]	C	T	3.258e^-9	9.501e^-6	SYNONYMOUS_CODING CG17930 INTRON Sulf1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14017160	3R_14017160_SNP [dm3] 3R_18191438_SNP [dm6]	C	A	3.400e^-9	9.901e^-6	SYNONYMOUS_CODING CG14313 DOWNSTREAM MED17	TF binding site mE1_TFBS_cad
X	3448618	X_3448618_INS [dm3] X_3554585_INS [dm6]	T	TT	3.432e^-9	9.978e^-6	INTRON CG32791
3R	5864082	3R_5864082_SNP [dm3] 3R_10038360_SNP [dm6]	T	A	3.449e^-9	1.001e^-5	INTRON Mical
3R	10641538	3R_10641538_SNP [dm3] 3R_14815816_SNP [dm6]	A	T	3.644e^-9	1.053e^-5	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	10641872	3R_10641872_SNP [dm3] 3R_14816150_SNP [dm6]	C	T	3.644e^-9	1.053e^-5	NON_SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15097654	3R_15097654_SNP [dm3] 3R_19271932_SNP [dm6]	T	G	3.644e^-9	1.053e^-5	INTERGENIC
2R	2060062	2R_2060062_SNP [dm3] 2R_6172557_SNP [dm6]	G	A	3.711e^-9	1.070e^-5	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
3L	2140018	3L_2140018_DEL [dm3] 3L_2140018_DEL [dm6]	TATAGCATGGCGGTCAATT...	T	3.740e^-9	1.077e^-5	INTRON zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5605817	2L_5605817_SNP [dm3] 2L_5605817_SNP [dm6]	T	G	3.753e^-9	1.079e^-5	INTRON CG14010
X	12445568	X_12445568_SNP [dm3] X_12551535_SNP [dm6]	G	T	3.837e^-9	1.102e^-5	INTRON CG43921
2L	20549104	2L_20549104_SNP [dm3] 2L_20549104_SNP [dm6]	G	A	3.907e^-9	1.120e^-5	INTERGENIC
2L	7017416	2L_7017416_SNP [dm3] 2L_7017416_SNP [dm6]	G	T	3.975e^-9	1.136e^-5	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20367896	X_20367896_SNP [dm3] X_20496869_SNP [dm6]	G	A	3.975e^-9	1.136e^-5	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20340337	2L_20340337_SNP [dm3] 2L_20340337_SNP [dm6]	T	C	4.035e^-9	1.151e^-5	DOWNSTREAM spir INTRON spir
2L	8868997	2L_8868997_SNP [dm3] 2L_8868997_SNP [dm6]	G	A	4.210e^-9	1.199e^-5	DOWNSTREAM CR44414 INTERGENIC
2L	4599091	2L_4599091_INS [dm3] 2L_4599091_INS [dm6]	T	TAT	4.219e^-9	1.200e^-5	INTRON dp	TF binding site mE1_TFBS_sbb
2L	11172671	2L_11172671_SNP [dm3] 2L_11172671_SNP [dm6]	T	A	4.329e^-9	1.216e^-5	INTRON Ca-beta
3L	7468668	3L_7468668_DEL [dm3] 3L_7475568_DEL [dm6]	TTGCTAT	T	4.401e^-9	1.216e^-5	UTR_5_PRIME CG43292 UPSTREAM CG43292 INTRAGENIC CG43292 INTERGENIC
2R	4563117	2R_4563117_SNP [dm3] 2R_8675612_SNP [dm6]	A	T	4.424e^-9	1.216e^-5	UTR_5_PRIME Acsl UPSTREAM Acsl INTRON Acsl
3L	19369812	3L_19369812_SNP [dm3] 3L_19376712_SNP [dm6]	G	A	4.426e^-9	1.216e^-5	INTRON CG32206
3L	23593012	3L_23593012_SNP [dm3] 3L_23599912_SNP [dm6]	C	T	4.462e^-9	1.216e^-5	INTRON AGO3	transposable element FlyBase
2L	893394	2L_893394_SNP [dm3] 2L_893394_SNP [dm6]	T	G	4.523e^-9	1.216e^-5	INTERGENIC
2L	10024571	2L_10024571_SNP [dm3] 2L_10024571_SNP [dm6]	C	A	4.523e^-9	1.216e^-5	INTERGENIC
2L	11172409	2L_11172409_SNP [dm3] 2L_11172409_SNP [dm6]	C	T	4.548e^-9	1.216e^-5	UPSTREAM Vm32E INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	12875173	2L_12875173_SNP [dm3] 2L_12875173_SNP [dm6]	T	C	4.584e^-9	1.216e^-5	INTERGENIC
2L	14904208	2L_14904208_SNP [dm3] 2L_14904208_SNP [dm6]	T	C	4.666e^-9	1.216e^-5	INTERGENIC
2R	453392	2R_453392_DEL [dm3] 2R_4565887_DEL [dm6]	ATCTTAAAAAA...	A	4.670e^-9	1.216e^-5	DOWNSTREAM Stlk INTERGENIC	transposable element FlyBase
2L	20543337	2L_20543337_SNP [dm3] 2L_20543337_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20543349	2L_20543349_SNP [dm3] 2L_20543349_SNP [dm6]	G	C	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4609607	2L_4609607_SNP [dm3] 2L_4609607_SNP [dm6]	A	C	4.739e^-9	1.216e^-5	INTRON dp
2L	4609608	2L_4609608_SNP [dm3] 2L_4609608_SNP [dm6]	G	C	4.739e^-9	1.216e^-5	INTRON dp
2L	4609622	2L_4609622_SNP [dm3] 2L_4609622_SNP [dm6]	T	G	4.739e^-9	1.216e^-5	INTRON dp
2L	4804700	2L_4804700_SNP [dm3] 2L_4804700_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTERGENIC
2R	1695268	2R_1695268_SNP [dm3] 2R_5807763_SNP [dm6]	C	A	4.739e^-9	1.216e^-5	INTRON dpr12	TF binding site BDTNP1_TFBS_hb
2R	8534015	2R_8534015_SNP [dm3] 2R_12646510_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	INTRON CG8785
2R	8783727	2R_8783727_SNP [dm3] 2R_12896222_SNP [dm6]	A	G	4.739e^-9	1.216e^-5	INTRON vg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10696050	3L_10696050_SNP [dm3] 3L_10702950_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	INTERGENIC
3L	12097521	3L_12097521_DEL [dm3] 3L_12104421_DEL [dm6]	ATAAAATGGCCAATTGAAGG...	A	4.739e^-9	1.216e^-5	INTERGENIC
3L	12097562	3L_12097562_SNP [dm3] 3L_12104462_SNP [dm6]	T	G	4.739e^-9	1.216e^-5	INTERGENIC
3L	12097576	3L_12097576_SNP [dm3] 3L_12104476_SNP [dm6]	A	C	4.739e^-9	1.216e^-5	INTERGENIC
3L	12105268	3L_12105268_SNP [dm3] 3L_12112168_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTERGENIC
3L	12105302	3L_12105302_SNP [dm3] 3L_12112202_SNP [dm6]	T	C	4.739e^-9	1.216e^-5	INTERGENIC
3L	13049093	3L_13049093_DEL [dm3] 3L_13055993_DEL [dm6]	CC	C	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	13663710	3L_13663710_SNP [dm3] 3L_13670610_SNP [dm6]	G	C	4.739e^-9	1.216e^-5	INTRON bru-3
3L	15141949	3L_15141949_SNP [dm3] 3L_15148849_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTRON FucTA
3L	15224867	3L_15224867_SNP [dm3] 3L_15231767_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15225943	3L_15225943_SNP [dm3] 3L_15232843_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	4.739e^-9	1.216e^-5	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2577332	3L_2577332_SNP [dm3] 3L_2577332_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTRON msn	regulatory region REDfly_CRMs
3L	2579253	3L_2579253_SNP [dm3] 3L_2579253_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2579366	3L_2579366_SNP [dm3] 3L_2579366_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2900648	3L_2900648_SNP [dm3] 3L_2900648_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTRON Shab
3L	2903071	3L_2903071_SNP [dm3] 3L_2903071_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTRON Shab
3L	2903076	3L_2903076_SNP [dm3] 3L_2903076_SNP [dm6]	C	A	4.739e^-9	1.216e^-5	INTRON Shab
3L	3623189	3L_3623189_SNP [dm3] 3L_3623189_SNP [dm6]	C	G	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site mE1_TFBS_sens
3L	6000006	3L_6000006_SNP [dm3] 3L_6006906_SNP [dm6]	G	T	4.739e^-9	1.216e^-5	INTRON PVRAP
3L	7182632	3L_7182632_SNP [dm3] 3L_7189532_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	UTR_5_PRIME Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9712818	3L_9712818_SNP [dm3] 3L_9719718_SNP [dm6]	T	C	4.739e^-9	1.216e^-5	SYNONYMOUS_CODING CG14174 UPSTREAM CG18178 DOWNSTREAM nbs	TF binding site mE1_TFBS_sens
3L	9715781	3L_9715781_SNP [dm3] 3L_9722681_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9718228	3L_9718228_SNP [dm3] 3L_9725128_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	SYNONYMOUS_CODING defl
3L	9718498	3L_9718498_SNP [dm3] 3L_9725398_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_chinmo
3R	13389526	3R_13389526_SNP [dm3] 3R_17563804_SNP [dm6]	C	A	4.739e^-9	1.216e^-5	INTRON Hmx
3R	13391057	3R_13391057_SNP [dm3] 3R_17565335_SNP [dm6]	T	A	4.739e^-9	1.216e^-5	INTRON Hmx
3R	13391513	3R_13391513_SNP [dm3] 3R_17565791_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	INTRON Hmx
3R	18226697	3R_18226697_SNP [dm3] 3R_22400975_SNP [dm6]	T	G	4.739e^-9	1.216e^-5	INTERGENIC
3R	8730254	3R_8730254_SNP [dm3] 3R_12904532_SNP [dm6]	G	T	4.739e^-9	1.216e^-5	INTERGENIC
3R	8739777	3R_8739777_SNP [dm3] 3R_12914055_SNP [dm6]	A	G	4.739e^-9	1.216e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10782861	X_10782861_SNP [dm3] X_10888828_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTRON Ork1
X	10850442	X_10850442_SNP [dm3] X_10956409_SNP [dm6]	C	G	4.739e^-9	1.216e^-5	NON_SYNONYMOUS_CODING Myo10A INTRON Myo10A	TF binding site mE1_TFBS_cad
X	10850516	X_10850516_SNP [dm3] X_10956483_SNP [dm6]	C	G	4.739e^-9	1.216e^-5	SYNONYMOUS_CODING Myo10A INTRON Myo10A	TF binding site mE1_TFBS_cad
X	10850914	X_10850914_SNP [dm3] X_10956881_SNP [dm6]	A	C	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10851244	X_10851244_SNP [dm3] X_10957211_SNP [dm6]	T	C	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10851648	X_10851648_DEL [dm3] X_10957615_DEL [dm6]	TT	T	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10851797	X_10851797_SNP [dm3] X_10957764_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10851911	X_10851911_SNP [dm3] X_10957878_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10851927	X_10851927_SNP [dm3] X_10957894_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10851987	X_10851987_DEL [dm3] X_10957954_DEL [dm6]	GTT	G	4.739e^-9	1.216e^-5	INTRON Myo10A
X	10967187	X_10967187_SNP [dm3] X_11073154_SNP [dm6]	A	G	4.739e^-9	1.216e^-5	INTRON sev	TF binding site mE1_TFBS_chinmo
X	17724584	X_17724584_SNP [dm3] X_17830551_SNP [dm6]	G	A	4.739e^-9	1.216e^-5	UPSTREAM CG6398 INTRON CR44691	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	18937855	X_18937855_SNP [dm3] X_19043822_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTERGENIC
X	20450592	X_20450592_SNP [dm3] X_20579565_SNP [dm6]	T	C	4.739e^-9	1.216e^-5	INTERGENIC
X	20450593	X_20450593_SNP [dm3] X_20579566_SNP [dm6]	G	T	4.739e^-9	1.216e^-5	INTERGENIC
X	20450595	X_20450595_SNP [dm3] X_20579568_SNP [dm6]	G	C	4.739e^-9	1.216e^-5	INTERGENIC
X	20450596	X_20450596_INS [dm3] X_20579569_INS [dm6]	G	GAAC	4.739e^-9	1.216e^-5	INTERGENIC
X	3201336	X_3201336_SNP [dm3] X_3307303_SNP [dm6]	C	T	4.739e^-9	1.216e^-5	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6111119	X_6111119_DEL [dm3] X_6217086_DEL [dm6]	CGAATTCTGGTGAAATTTGC...	C	4.739e^-9	1.216e^-5	DOWNSTREAM Btd INTERGENIC
X	6111143	X_6111143_SNP [dm3] X_6217110_SNP [dm6]	A	T	4.739e^-9	1.216e^-5	DOWNSTREAM Btd INTERGENIC
3R	6036969	3R_6036969_SNP [dm3] 3R_10211247_SNP [dm6]	T	G	4.836e^-9	1.237e^-5	INTRON Syn & 1 other
3R	7365606	3R_7365606_SNP [dm3] 3R_11539884_SNP [dm6]	C	A	4.839e^-9	1.237e^-5	INTRON dpr4
3R	9723303	3R_9723303_SNP [dm3] 3R_13897581_SNP [dm6]	C	T	4.839e^-9	1.237e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13090623	3R_13090623_SNP [dm3] 3R_17264901_SNP [dm6]	T	C	4.859e^-9	1.240e^-5	UTR_5_PRIME beat-IIb UPSTREAM CG44257
2L	11172635	2L_11172635_SNP [dm3] 2L_11172635_SNP [dm6]	A	T	4.865e^-9	1.240e^-5	UPSTREAM Vm32E INTRON Ca-beta
2L	9883632	2L_9883632_SNP [dm3] 2L_9883632_SNP [dm6]	A	G	4.901e^-9	1.247e^-5	INTRON nAChRalpha6
X	10851887	X_10851887_SNP [dm3] X_10957854_SNP [dm6]	C	T	4.916e^-9	1.249e^-5	INTRON Myo10A
2R	15254511	2R_15254511_SNP [dm3] 2R_19367006_SNP [dm6]	C	T	5.288e^-9	1.334e^-5	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
2L	4599184	2L_4599184_SNP [dm3] 2L_4599184_SNP [dm6]	G	A	5.301e^-9	1.334e^-5	INTRON dp	TF binding site mE1_TFBS_sbb
2L	4869632	2L_4869632_SNP [dm3] 2L_4869632_SNP [dm6]	T	G	5.301e^-9	1.334e^-5	INTRON pog
3L	2909218	3L_2909218_DEL [dm3] 3L_2909218_DEL [dm6]	TT	T	5.301e^-9	1.334e^-5	INTRON Shab
3L	2909221	3L_2909221_SNP [dm3] 3L_2909221_SNP [dm6]	G	C	5.301e^-9	1.334e^-5	INTRON Shab
3L	2909542	3L_2909542_INS [dm3] 3L_2909542_INS [dm6]	T	TAT	5.301e^-9	1.334e^-5	INTRON Shab
3L	6517745	3L_6517745_SNP [dm3] 3L_6524645_SNP [dm6]	G	A	5.301e^-9	1.334e^-5	INTRON sfl
2R	11615878	2R_11615878_SNP [dm3] 2R_15728373_SNP [dm6]	A	G	5.346e^-9	1.344e^-5	INTRON CG30089
3L	2904727	3L_2904727_SNP [dm3] 3L_2904727_SNP [dm6]	C	T	5.378e^-9	1.350e^-5	INTRON Shab
2L	17677098	2L_17677098_SNP [dm3] 2L_17677098_SNP [dm6]	G	C	5.430e^-9	1.362e^-5	INTRON CadN
3L	4680935	3L_4680935_SNP [dm3] 3L_4680935_SNP [dm6]	T	C	5.488e^-9	1.374e^-5	INTRON axo
3R	11264305	3R_11264305_SNP [dm3] 3R_15438583_SNP [dm6]	A	G	5.498e^-9	1.374e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20339762	2L_20339762_SNP [dm3] 2L_20339762_SNP [dm6]	C	T	5.501e^-9	1.374e^-5	SYNONYMOUS_CODING spir INTRON spir
X	10718908	X_10718908_DEL [dm3] X_10824875_DEL [dm6]	AGATAG	A	5.754e^-9	1.431e^-5	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10718924	X_10718924_SNP [dm3] X_10824891_SNP [dm6]	G	A	5.754e^-9	1.431e^-5	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10718934	X_10718934_SNP [dm3] X_10824901_SNP [dm6]	T	C	5.754e^-9	1.431e^-5	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6756934	3L_6756934_SNP [dm3] 3L_6763834_SNP [dm6]	G	T	5.766e^-9	1.432e^-5	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	6114869	2L_6114869_SNP [dm3] 2L_6114869_SNP [dm6]	A	G	5.816e^-9	1.443e^-5	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	20005693	X_20005693_SNP [dm3] X_20111660_SNP [dm6]	T	C	5.839e^-9	1.446e^-5	INTERGENIC
2L	11172623	2L_11172623_DEL [dm3] 2L_11172623_DEL [dm6]	GG	G	5.915e^-9	1.463e^-5	UPSTREAM Vm32E INTRON Ca-beta
X	20367906	X_20367906_SNP [dm3] X_20496879_SNP [dm6]	A	G	5.936e^-9	1.467e^-5	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8060308	X_8060308_INS [dm3] X_8166275_INS [dm6]	T	TT	5.950e^-9	1.468e^-5	UTR_3_PRIME CG2278 UPSTREAM Or7a DOWNSTREAM CG2278
3R	2971781	3R_2971781_SNP [dm3] 3R_7146059_SNP [dm6]	C	A	6.017e^-9	1.481e^-5	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
3R	2971782	3R_2971782_SNP [dm3] 3R_7146060_SNP [dm6]	C	T	6.017e^-9	1.481e^-5	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
3R	9726662	3R_9726662_SNP [dm3] 3R_13900940_SNP [dm6]	T	C	6.097e^-9	1.485e^-5	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15317387	3R_15317387_SNP [dm3] 3R_19491665_SNP [dm6]	A	T	6.103e^-9	1.485e^-5	UPSTREAM CG15025 INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11064180	3L_11064180_SNP [dm3] 3L_11071080_SNP [dm6]	G	A	6.105e^-9	1.485e^-5	SYNONYMOUS_CODING Mocs1
3R	18109287	3R_18109287_INS [dm3] 3R_22283565_INS [dm6]	G	GCGGAG	6.152e^-9	1.485e^-5	INTRON SKIP
3R	18109289	3R_18109289_SNP [dm3] 3R_22283567_SNP [dm6]	G	A	6.152e^-9	1.485e^-5	INTRON SKIP
X	5726344	X_5726344_SNP [dm3] X_5832311_SNP [dm6]	A	G	6.152e^-9	1.485e^-5	UPSTREAM CR43264 INTRON CG15765 EXON tRNA:CR32761:Psi
3R	18109243	3R_18109243_SNP [dm3] 3R_22283521_SNP [dm6]	T	C	6.226e^-9	1.485e^-5	INTRON SKIP
2L	4553937	2L_4553937_SNP [dm3] 2L_4553937_SNP [dm6]	G	A	6.255e^-9	1.485e^-5	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7440387	3L_7440387_SNP [dm3] 3L_7447287_SNP [dm6]	C	T	6.255e^-9	1.485e^-5	INTRON CG42458
3R	14449670	3R_14449670_SNP [dm3] 3R_18623948_SNP [dm6]	G	A	6.255e^-9	1.485e^-5	INTRON qin
2R	2645312	2R_2645312_SNP [dm3] 2R_6757807_SNP [dm6]	C	A	6.258e^-9	1.485e^-5	UTR_3_PRIME CG9436 UPSTREAM CG3420	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2645497	2R_2645497_SNP [dm3] 2R_6757992_SNP [dm6]	C	G	6.258e^-9	1.485e^-5	SYNONYMOUS_CODING CG9436 UPSTREAM CG3420	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2669049	2R_2669049_SNP [dm3] 2R_6781544_SNP [dm6]	T	C	6.258e^-9	1.485e^-5	UPSTREAM Cyp6a2 INTRON Epac	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	15225312	3L_15225312_SNP [dm3] 3L_15232212_SNP [dm6]	A	G	6.258e^-9	1.485e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1876027	3L_1876027_SNP [dm3] 3L_1876027_SNP [dm6]	C	T	6.258e^-9	1.485e^-5	DOWNSTREAM CG13937 INTRON dre4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2087607	3L_2087607_SNP [dm3] 3L_2087607_SNP [dm6]	C	G	6.258e^-9	1.485e^-5	UPSTREAM CR42860 DOWNSTREAM sls INTRON sls	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2087611	3L_2087611_SNP [dm3] 3L_2087611_SNP [dm6]	A	C	6.258e^-9	1.485e^-5	UPSTREAM CR42860 DOWNSTREAM sls INTRON sls	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2087965	3L_2087965_SNP [dm3] 3L_2087965_SNP [dm6]	C	A	6.258e^-9	1.485e^-5	UPSTREAM CR42860 DOWNSTREAM sls INTRON sls	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2087986	3L_2087986_SNP [dm3] 3L_2087986_SNP [dm6]	A	G	6.258e^-9	1.485e^-5	UPSTREAM CR42860 DOWNSTREAM sls INTRON sls	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	2674754	3L_2674754_SNP [dm3] 3L_2674754_SNP [dm6]	T	A	6.258e^-9	1.485e^-5	INTRON Fife
3L	9555850	3L_9555850_SNP [dm3] 3L_9562750_SNP [dm6]	G	A	6.258e^-9	1.485e^-5	INTRON CG42673
3R	10015935	3R_10015935_DEL [dm3] 3R_14190213_DEL [dm6]	TC	T	6.258e^-9	1.485e^-5	INTRON Dop1R1
3R	13939147	3R_13939147_SNP [dm3] 3R_18113425_SNP [dm6]	A	G	6.258e^-9	1.485e^-5	INTRON sr
2R	8470561	2R_8470561_SNP [dm3] 2R_12583056_SNP [dm6]	C	T	6.280e^-9	1.485e^-5	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10696999	3L_10696999_SNP [dm3] 3L_10703899_SNP [dm6]	T	A	6.280e^-9	1.485e^-5	INTERGENIC
3L	2487057	3L_2487057_SNP [dm3] 3L_2487057_SNP [dm6]	A	T	6.280e^-9	1.485e^-5	INTRON CG45186
3L	2902509	3L_2902509_SNP [dm3] 3L_2902509_SNP [dm6]	C	T	6.280e^-9	1.485e^-5	INTRON Shab
X	21183747	X_21183747_SNP [dm3] X_21312720_SNP [dm6]	A	G	6.280e^-9	1.485e^-5	SYNONYMOUS_CODING CG1801
X	21185604	X_21185604_SNP [dm3] X_21314577_SNP [dm6]	A	G	6.280e^-9	1.485e^-5	SYNONYMOUS_CODING CG1801
X	3252651	X_3252651_SNP [dm3] X_3358618_SNP [dm6]	A	T	6.280e^-9	1.485e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	7869593	X_7869593_SNP [dm3] X_7975560_SNP [dm6]	T	G	6.280e^-9	1.485e^-5	INTRON sn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7896139	3L_7896139_SNP [dm3] 3L_7903039_SNP [dm6]	T	C	6.346e^-9	1.498e^-5	INTRON pbl	TF binding site BDTNP1_TFBS_twi
2L	9882512	2L_9882512_SNP [dm3] 2L_9882512_SNP [dm6]	G	C	6.436e^-9	1.514e^-5	INTRON nAChRalpha6
2L	9882558	2L_9882558_SNP [dm3] 2L_9882558_SNP [dm6]	G	C	6.436e^-9	1.514e^-5	INTRON nAChRalpha6
3L	11231385	3L_11231385_SNP [dm3] 3L_11238285_SNP [dm6]	C	G	6.436e^-9	1.514e^-5	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9723959	3R_9723959_SNP [dm3] 3R_13898237_SNP [dm6]	G	A	6.455e^-9	1.516e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	23480102	3R_23480102_SNP [dm3] 3R_27654380_SNP [dm6]	G	A	6.584e^-9	1.545e^-5	INTRON tau	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8618429	2L_8618429_SNP [dm3] 2L_8618429_SNP [dm6]	C	T	6.624e^-9	1.552e^-5	INTRON Sema-1a
3R	6036982	3R_6036982_SNP [dm3] 3R_10211260_SNP [dm6]	G	T	6.662e^-9	1.559e^-5	INTRON Syn & 1 other
2L	10204158	2L_10204158_SNP [dm3] 2L_10204158_SNP [dm6]	T	C	6.689e^-9	1.563e^-5	DOWNSTREAM CG5734 INTRON CG34159	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20084539	2L_20084539_SNP [dm3] 2L_20084539_SNP [dm6]	T	C	6.773e^-9	1.579e^-5	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9535302	2R_9535302_SNP [dm3] 2R_13647797_SNP [dm6]	C	G	6.773e^-9	1.579e^-5	INTRON fas
3R	23987243	3R_23987243_DEL [dm3] 3R_28161521_DEL [dm6]	TT	T	6.939e^-9	1.616e^-5	INTRON CG34354
3L	13439412	3L_13439412_DEL [dm3] 3L_13446312_DEL [dm6]	TC	T	6.970e^-9	1.621e^-5	INTRON CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6259125	2R_6259125_SNP [dm3] 2R_10371620_SNP [dm6]	A	G	7.012e^-9	1.623e^-5	INTRON CG42732
2R	2094430	2R_2094430_SNP [dm3] 2R_6206925_SNP [dm6]	T	A	7.014e^-9	1.623e^-5	DOWNSTREAM CG17994 INTERGENIC
2R	2096764	2R_2096764_SNP [dm3] 2R_6209259_SNP [dm6]	C	A	7.014e^-9	1.623e^-5	NON_SYNONYMOUS_CODING CG17994 DOWNSTREAM l_2_k14710	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12729191	2L_12729191_SNP [dm3] 2L_12729191_SNP [dm6]	C	T	7.015e^-9	1.623e^-5	NON_SYNONYMOUS_CODING MRP INTRON MRP
2R	9279659	2R_9279659_SNP [dm3] 2R_13392154_SNP [dm6]	T	C	7.043e^-9	1.628e^-5	SYNONYMOUS_CODING CG43691
3L	9896105	3L_9896105_SNP [dm3] 3L_9903005_SNP [dm6]	T	A	7.366e^-9	1.700e^-5	UTR_3_PRIME nudE DOWNSTREAM nudE
2L	16423791	2L_16423791_SNP [dm3] 2L_16423791_SNP [dm6]	T	C	7.682e^-9	1.771e^-5	INTRON CG5888	TF binding site BDTNP1_TFBS_dl
3L	17965562	3L_17965562_SNP [dm3] 3L_17972462_SNP [dm6]	G	C	7.769e^-9	1.786e^-5	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1102160	2L_1102160_SNP [dm3] 2L_1102160_SNP [dm6]	G	C	7.833e^-9	1.786e^-5	INTRON CG4629
2L	16236790	2L_16236790_SNP [dm3] 2L_16236790_SNP [dm6]	G	A	7.833e^-9	1.786e^-5	SYNONYMOUS_CODING CG42817
2L	6092778	2L_6092778_DEL [dm3] 2L_6092778_DEL [dm6]	GCAAAGGAG	G	7.833e^-9	1.786e^-5	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12882788	2R_12882788_SNP [dm3] 2R_16995283_SNP [dm6]	G	A	7.833e^-9	1.786e^-5	UTR_3_PRIME Cbp53E DOWNSTREAM Cbp53E & 2 others
2R	9519636	2R_9519636_DEL [dm3] 2R_13632131_DEL [dm6]	TT	T	7.833e^-9	1.786e^-5	INTRON fas
2R	9519677	2R_9519677_SNP [dm3] 2R_13632172_SNP [dm6]	A	T	7.833e^-9	1.786e^-5	INTRON fas
2R	9519746	2R_9519746_SNP [dm3] 2R_13632241_SNP [dm6]	G	T	7.833e^-9	1.786e^-5	INTRON fas
3L	14114986	3L_14114986_SNP [dm3] 3L_14121886_SNP [dm6]	C	T	7.874e^-9	1.786e^-5	INTRON Sox21b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	14476511	3L_14476511_SNP [dm3] 3L_14483411_SNP [dm6]	C	A	7.874e^-9	1.786e^-5	INTRON bbg
3L	8543822	3L_8543822_SNP [dm3] 3L_8550722_SNP [dm6]	C	T	7.874e^-9	1.786e^-5	INTRON rhea
3L	9297660	3L_9297660_SNP [dm3] 3L_9304560_SNP [dm6]	C	T	7.874e^-9	1.786e^-5	INTERGENIC
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	7.874e^-9	1.786e^-5	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
2L	1693490	2L_1693490_SNP [dm3] 2L_1693490_SNP [dm6]	G	A	7.993e^-9	1.811e^-5	INTRON chinmo
3R	11133093	3R_11133093_SNP [dm3] 3R_15307371_SNP [dm6]	C	T	8.085e^-9	1.830e^-5	DOWNSTREAM Tm1 INTRON Tm1
3L	6363031	3L_6363031_SNP [dm3] 3L_6369931_SNP [dm6]	T	C	8.095e^-9	1.830e^-5	DOWNSTREAM CR45419 INTERGENIC
2R	2944284	2R_2944284_SNP [dm3] 2R_7056779_SNP [dm6]	A	C	8.125e^-9	1.831e^-5	DOWNSTREAM Tsp42Eo & 1 other INTRON Tsp42Ep	TF binding site mE1_TFBS_chinmo
3R	18112949	3R_18112949_SNP [dm3] 3R_22287227_SNP [dm6]	A	T	8.125e^-9	1.831e^-5	INTRON SKIP	TF binding site mE1_TFBS_HSA
3R	358221	3R_358221_SNP [dm3] 3R_4532499_SNP [dm6]	T	G	8.130e^-9	1.831e^-5	UPSTREAM CG31526 INTRON CG34357
3R	16174021	3R_16174021_SNP [dm3] 3R_20348299_SNP [dm6]	G	T	8.153e^-9	1.834e^-5	INTERGENIC
3L	15107855	3L_15107855_INS [dm3] 3L_15114755_INS [dm6]	A	AGGCGCATTAA...	8.177e^-9	1.835e^-5	INTRON CG13458
3R	9733360	3R_9733360_SNP [dm3] 3R_13907638_SNP [dm6]	G	A	8.177e^-9	1.835e^-5	INTERGENIC
2R	2647286	2R_2647286_SNP [dm3] 2R_6759781_SNP [dm6]	C	A	8.221e^-9	1.836e^-5	UTR_3_PRIME Epac UPSTREAM CG9436
3L	1383627	3L_1383627_SNP [dm3] 3L_1383627_SNP [dm6]	G	C	8.221e^-9	1.836e^-5	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3R	2971784	3R_2971784_SNP [dm3] 3R_7146062_SNP [dm6]	C	A	8.232e^-9	1.836e^-5	UTR_3_PRIME gfzf DOWNSTREAM gfzf INTRON CG2656
3R	17296797	3R_17296797_SNP [dm3] 3R_21471075_SNP [dm6]	G	A	8.251e^-9	1.836e^-5	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18102911	3R_18102911_SNP [dm3] 3R_22277189_SNP [dm6]	A	T	8.251e^-9	1.836e^-5	INTRON SKIP
3R	2950189	3R_2950189_SNP [dm3] 3R_7124467_SNP [dm6]	C	T	8.251e^-9	1.836e^-5	UPSTREAM CG10098 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4053894	3L_4053894_SNP [dm3] 3L_4053894_SNP [dm6]	C	T	8.260e^-9	1.836e^-5	INTRON CG1136
3R	14449654	3R_14449654_SNP [dm3] 3R_18623932_SNP [dm6]	A	C	8.260e^-9	1.836e^-5	INTRON qin
X	3926189	X_3926189_SNP [dm3] X_4032156_SNP [dm6]	T	C	8.289e^-9	1.839e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4850433	2R_4850433_SNP [dm3] 2R_8962928_SNP [dm6]	C	G	8.293e^-9	1.839e^-5	DOWNSTREAM CG8216 & 1 other INTERGENIC
3L	2579175	3L_2579175_SNP [dm3] 3L_2579175_SNP [dm6]	C	T	8.324e^-9	1.844e^-5	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2944832	3R_2944832_SNP [dm3] 3R_7119110_SNP [dm6]	A	G	8.483e^-9	1.877e^-5	INTRON Alh
2L	9883300	2L_9883300_SNP [dm3] 2L_9883300_SNP [dm6]	T	C	8.528e^-9	1.884e^-5	INTRON nAChRalpha6
2R	11475672	2R_11475672_SNP [dm3] 2R_15588167_SNP [dm6]	T	G	8.601e^-9	1.898e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	8.755e^-9	1.930e^-5	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3L	12411172	3L_12411172_SNP [dm3] 3L_12418072_SNP [dm6]	T	G	8.963e^-9	1.973e^-5	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	5920371	3R_5920371_SNP [dm3] 3R_10094649_SNP [dm6]	A	C	9.007e^-9	1.981e^-5	DOWNSTREAM CR43459 EXON CR43459
2R	9279637	2R_9279637_SNP [dm3] 2R_13392132_SNP [dm6]	T	C	9.045e^-9	1.987e^-5	NON_SYNONYMOUS_CODING CG43691
3R	20350811	3R_20350811_DEL [dm3] 3R_24525089_DEL [dm6]	AA	A	9.057e^-9	1.987e^-5	INTRON CG13618
2R	10605026	2R_10605026_SNP [dm3] 2R_14717521_SNP [dm6]	A	T	9.126e^-9	2.000e^-5	INTERGENIC
2R	19566004	2R_19566004_SNP [dm3] 2R_23678481_SNP [dm6]	C	A	9.307e^-9	2.037e^-5	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18124344	X_18124344_INS [dm3] X_18230311_INS [dm6]	T	TT	9.322e^-9	2.038e^-5	INTERGENIC
2L	1399015	2L_1399015_SNP [dm3] 2L_1399015_SNP [dm6]	A	T	9.362e^-9	2.044e^-5	INTRON lea	TF binding site BDTNP1_TFBS_dl
2R	10997925	2R_10997925_DEL [dm3] 2R_15110420_DEL [dm6]	CAATTGC	C	9.456e^-9	2.059e^-5	INTERGENIC
2L	13352364	2L_13352364_SNP [dm3] 2L_13352364_SNP [dm6]	T	C	9.464e^-9	2.059e^-5	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad
2R	10114957	2R_10114957_SNP [dm3] 2R_14227452_SNP [dm6]	A	G	9.530e^-9	2.059e^-5	SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10126410	2R_10126410_INS [dm3] 2R_14238905_INS [dm6]	T	TT	9.530e^-9	2.059e^-5	INTRON CG8485	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	10127451	2R_10127451_SNP [dm3] 2R_14239946_SNP [dm6]	A	G	9.530e^-9	2.059e^-5	UTR_5_PRIME CG8494 UPSTREAM CG8485	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	10127478	2R_10127478_SNP [dm3] 2R_14239973_SNP [dm6]	A	T	9.530e^-9	2.059e^-5	UTR_5_PRIME CG8494 UPSTREAM CG8485	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	10130123	2R_10130123_SNP [dm3] 2R_14242618_SNP [dm6]	T	C	9.530e^-9	2.059e^-5	SYNONYMOUS_CODING CG8494	TF binding site mE1_TFBS_cad
2R	10604996	2R_10604996_SNP [dm3] 2R_14717491_SNP [dm6]	A	G	9.530e^-9	2.059e^-5	INTERGENIC
2R	10605000	2R_10605000_SNP [dm3] 2R_14717495_SNP [dm6]	T	G	9.530e^-9	2.059e^-5	INTERGENIC
2L	4757294	2L_4757294_SNP [dm3] 2L_4757294_SNP [dm6]	A	T	9.596e^-9	2.071e^-5	INTRON CG15630
2R	1920913	2R_1920913_SNP [dm3] 2R_6033408_SNP [dm6]	A	T	9.630e^-9	2.076e^-5	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
3R	13644805	3R_13644805_SNP [dm3] 3R_17819083_SNP [dm6]	C	T	9.646e^-9	2.077e^-5	INTRON tinc
3R	23971738	3R_23971738_SNP [dm3] 3R_28146016_SNP [dm6]	A	G	9.737e^-9	2.094e^-5	UPSTREAM CG34354 INTERGENIC
3L	19958498	3L_19958498_SNP [dm3] 3L_19965398_SNP [dm6]	G	T	9.839e^-9	2.114e^-5	INTRON Ac76E
3R	9519735	3R_9519735_SNP [dm3] 3R_13694013_SNP [dm6]	C	T	9.912e^-9	2.127e^-5	UPSTREAM CG14367 DOWNSTREAM flfl INTERGENIC
3L	2299740	3L_2299740_SNP [dm3] 3L_2299740_SNP [dm6]	G	T	9.929e^-9	2.128e^-5	INTRON MsR2	TF binding site mE1_TFBS_cad
2L	15963036	2L_15963036_SNP [dm3] 2L_15963036_SNP [dm6]	A	T	9.959e^-9	2.128e^-5	UPSTREAM beat-Ib INTERGENIC
X	9660677	X_9660677_SNP [dm3] X_9766644_SNP [dm6]	T	C	9.964e^-9	2.128e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9660679	X_9660679_SNP [dm3] X_9766646_SNP [dm6]	T	C	9.964e^-9	2.128e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7361832	2R_7361832_SNP [dm3] 2R_11474327_SNP [dm6]	C	G	1.007e^-8	2.147e^-5	UPSTREAM inv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11505890	2R_11505890_SNP [dm3] 2R_15618385_SNP [dm6]	C	T	1.007e^-8	2.147e^-5	INTRON CG42524
3L	3915386	3L_3915386_INS [dm3] 3L_3915386_INS [dm6]	A	AA	1.020e^-8	2.168e^-5	INTRON Eip63F-1
2R	9279672	2R_9279672_SNP [dm3] 2R_13392167_SNP [dm6]	A	G	1.021e^-8	2.168e^-5	NON_SYNONYMOUS_CODING CG43691
3L	22295183	3L_22295183_INS [dm3] 3L_22302083_INS [dm6]	G	GTTG	1.021e^-8	2.168e^-5	INTRON Ten-m
3R	22515692	3R_22515692_SNP [dm3] 3R_26689970_SNP [dm6]	G	A	1.023e^-8	2.168e^-5	INTERGENIC
2L	1901046	2L_1901046_SNP [dm3] 2L_1901046_SNP [dm6]	T	A	1.025e^-8	2.168e^-5	INTRON CG7337
3R	13644806	3R_13644806_SNP [dm3] 3R_17819084_SNP [dm6]	A	G	1.025e^-8	2.168e^-5	INTRON tinc
2L	15419298	2L_15419298_SNP [dm3] 2L_15419298_SNP [dm6]	G	A	1.026e^-8	2.168e^-5	UPSTREAM CG44869 INTERGENIC
3L	3919249	3L_3919249_SNP [dm3] 3L_3919249_SNP [dm6]	T	C	1.030e^-8	2.176e^-5	INTRON Eip63F-1
2L	6554931	2L_6554931_DEL [dm3] 2L_6554931_DEL [dm6]	TGTA	T	1.034e^-8	2.177e^-5	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6554949	2L_6554949_SNP [dm3] 2L_6554949_SNP [dm6]	A	T	1.034e^-8	2.177e^-5	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10615070	2R_10615070_SNP [dm3] 2R_14727565_SNP [dm6]	G	A	1.034e^-8	2.177e^-5	INTERGENIC
2L	5233270	2L_5233270_SNP [dm3] 2L_5233270_SNP [dm6]	A	G	1.043e^-8	2.193e^-5	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2912203	3L_2912203_SNP [dm3] 3L_2912203_SNP [dm6]	A	T	1.047e^-8	2.198e^-5	INTRON Shab
X	20250372	X_20250372_SNP [dm3] X_20379345_SNP [dm6]	T	C	1.077e^-8	2.259e^-5	INTERGENIC
3R	15456373	3R_15456373_SNP [dm3] 3R_19630651_SNP [dm6]	C	A	1.085e^-8	2.272e^-5	INTRON CG6231
3R	18108764	3R_18108764_SNP [dm3] 3R_22283042_SNP [dm6]	G	T	1.085e^-8	2.272e^-5	INTRON SKIP
3R	20201147	3R_20201147_SNP [dm3] 3R_24375425_SNP [dm6]	T	G	1.091e^-8	2.282e^-5	INTRON CG17781
3L	8543711	3L_8543711_SNP [dm3] 3L_8550611_SNP [dm6]	T	A	1.104e^-8	2.306e^-5	INTRON rhea
3L	8543706	3L_8543706_SNP [dm3] 3L_8550606_SNP [dm6]	A	T	1.129e^-8	2.355e^-5	INTRON rhea
2L	9058806	2L_9058806_DEL [dm3] 2L_9058806_DEL [dm6]	GG	G	1.133e^-8	2.361e^-5	INTRON CG31708
2L	9174997	2L_9174997_SNP [dm3] 2L_9174997_SNP [dm6]	A	C	1.143e^-8	2.378e^-5	INTRON tai
2R	10148684	2R_10148684_DEL [dm3] 2R_14261179_DEL [dm6]	AA	A	1.144e^-8	2.378e^-5	DOWNSTREAM CG8547 & 1 other INTERGENIC
3L	3915067	3L_3915067_SNP [dm3] 3L_3915067_SNP [dm6]	A	C	1.154e^-8	2.396e^-5	INTRON Eip63F-1
2L	20419707	2L_20419707_SNP [dm3] 2L_20419707_SNP [dm6]	C	T	1.159e^-8	2.405e^-5	UPSTREAM snoRNA:Psi18S-525f & 1 other DOWNSTREAM snoRNA:Psi18S-525b & 5 others INTRON Arpc2 EXON snoRNA:Psi18S-640d
3L	19362830	3L_19362830_SNP [dm3] 3L_19369730_SNP [dm6]	C	A	1.162e^-8	2.408e^-5	INTRON CG32206
2L	16232469	2L_16232469_SNP [dm3] 2L_16232469_SNP [dm6]	A	T	1.171e^-8	2.422e^-5	INTRON CG42817	TF binding site BDTNP1_TFBS_slp1
2L	17495978	2L_17495978_SNP [dm3] 2L_17495978_SNP [dm6]	C	G	1.175e^-8	2.429e^-5	INTRON qua	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10926746	2R_10926746_SNP [dm3] 2R_15039241_SNP [dm6]	A	C	1.180e^-8	2.436e^-5	SPLICE_SITE_REGION hbs INTRON hbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19375643	2L_19375643_SNP [dm3] 2L_19375643_SNP [dm6]	C	A	1.190e^-8	2.455e^-5	INTERGENIC
2R	2777749	2R_2777749_SNP [dm3] 2R_6890244_SNP [dm6]	A	G	1.200e^-8	2.473e^-5	INTERGENIC
3L	8850369	3L_8850369_SNP [dm3] 3L_8857269_SNP [dm6]	C	A	1.204e^-8	2.478e^-5	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3936250	X_3936250_SNP [dm3] X_4042217_SNP [dm6]	A	T	1.213e^-8	2.494e^-5	INTERGENIC
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	1.217e^-8	2.499e^-5	INTRON Ptp99A
2L	2026669	2L_2026669_SNP [dm3] 2L_2026669_SNP [dm6]	G	A	1.225e^-8	2.512e^-5	INTRON CG4238	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7680486	2L_7680486_SNP [dm3] 2L_7680486_SNP [dm6]	C	T	1.234e^-8	2.523e^-5	INTRON Myo28B1
2L	7680652	2L_7680652_SNP [dm3] 2L_7680652_SNP [dm6]	C	T	1.234e^-8	2.523e^-5	SYNONYMOUS_CODING Myo28B1
2L	7680712	2L_7680712_SNP [dm3] 2L_7680712_SNP [dm6]	T	C	1.234e^-8	2.523e^-5	SYNONYMOUS_CODING Myo28B1
2L	2026691	2L_2026691_SNP [dm3] 2L_2026691_SNP [dm6]	C	T	1.250e^-8	2.553e^-5	INTRON CG4238	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10157269	2R_10157269_SNP [dm3] 2R_14269764_SNP [dm6]	C	T	1.259e^-8	2.568e^-5	SYNONYMOUS_CODING SelD UPSTREAM conv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10924514	2R_10924514_SNP [dm3] 2R_15037009_SNP [dm6]	C	A	1.266e^-8	2.579e^-5	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo
2L	9086210	2L_9086210_SNP [dm3] 2L_9086210_SNP [dm6]	G	A	1.274e^-8	2.593e^-5	INTRON Toll-4
3L	14962060	3L_14962060_SNP [dm3] 3L_14968960_SNP [dm6]	A	T	1.279e^-8	2.600e^-5	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9660594	X_9660594_SNP [dm3] X_9766561_SNP [dm6]	G	T	1.295e^-8	2.630e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3377945	3L_3377945_SNP [dm3] 3L_3377945_SNP [dm6]	T	A	1.300e^-8	2.635e^-5	UTR_3_PRIME CG12012 UPSTREAM CG12014 DOWNSTREAM CG12012
3R	3816410	3R_3816410_SNP [dm3] 3R_7990688_SNP [dm6]	C	T	1.300e^-8	2.635e^-5	INTRON CG2781
2L	10707731	2L_10707731_SNP [dm3] 2L_10707731_SNP [dm6]	G	A	1.315e^-8	2.662e^-5	INTRON Lip2
3R	16613102	3R_16613102_SNP [dm3] 3R_20787380_SNP [dm6]	C	G	1.328e^-8	2.685e^-5	INTRON Syp
2L	19390402	2L_19390402_SNP [dm3] 2L_19390402_SNP [dm6]	C	A	1.344e^-8	2.714e^-5	UTR_3_PRIME CG17544 UPSTREAM CG17549
2R	10104480	2R_10104480_SNP [dm3] 2R_14216975_SNP [dm6]	A	G	1.345e^-8	2.714e^-5	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	17817894	2L_17817894_DEL [dm3] 2L_17817894_DEL [dm6]	CATCAGCCCAGGC...	C	1.347e^-8	2.714e^-5	INTRON CadN2
2L	10861650	2L_10861650_SNP [dm3] 2L_10861650_SNP [dm6]	C	A	1.349e^-8	2.716e^-5	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
X	6950185	X_6950185_SNP [dm3] X_7056152_SNP [dm6]	G	A	1.351e^-8	2.716e^-5	INTRON CG12541
2L	7235703	2L_7235703_SNP [dm3] 2L_7235703_SNP [dm6]	T	A	1.352e^-8	2.716e^-5	INTRON Ndae1	TF binding site mE1_TFBS_cad
2L	10242221	2L_10242221_SNP [dm3] 2L_10242221_SNP [dm6]	T	A	1.354e^-8	2.717e^-5	UPSTREAM CR44995 DOWNSTREAM chico & 1 other INTERGENIC
2L	7703503	2L_7703503_SNP [dm3] 2L_7703503_SNP [dm6]	G	A	1.363e^-8	2.725e^-5	INTRON Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11924561	3L_11924561_SNP [dm3] 3L_11931461_SNP [dm6]	C	G	1.364e^-8	2.725e^-5	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15187935	2L_15187935_SNP [dm3] 2L_15187935_SNP [dm6]	G	A	1.366e^-8	2.725e^-5	INTRON CG4168
2L	21877540	2L_21877540_SNP [dm3] 2L_21877540_SNP [dm6]	C	T	1.366e^-8	2.725e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9924500	2L_9924500_SNP [dm3] 2L_9924500_SNP [dm6]	C	T	1.366e^-8	2.725e^-5	SYNONYMOUS_CODING TbCMF46 UPSTREAM CG42366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9924575	2L_9924575_SNP [dm3] 2L_9924575_SNP [dm6]	G	A	1.366e^-8	2.725e^-5	SPLICE_SITE_REGION TbCMF46 SYNONYMOUS_CODING TbCMF46 UPSTREAM CG42366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8861194	X_8861194_SNP [dm3] X_8967161_SNP [dm6]	C	T	1.401e^-8	2.792e^-5	INTRON rdgA
3L	5587931	3L_5587931_SNP [dm3] 3L_5594831_SNP [dm6]	A	C	1.410e^-8	2.806e^-5	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
3L	15141791	3L_15141791_SNP [dm3] 3L_15148691_SNP [dm6]	G	A	1.432e^-8	2.845e^-5	INTRON FucTA
2L	19390128	2L_19390128_SNP [dm3] 2L_19390128_SNP [dm6]	A	G	1.439e^-8	2.858e^-5	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
2L	21008798	2L_21008798_DEL [dm3] 2L_21008798_DEL [dm6]	AA	A	1.457e^-8	2.888e^-5	INTRON CG42238
2L	5213358	2L_5213358_SNP [dm3] 2L_5213358_SNP [dm6]	G	A	1.458e^-8	2.888e^-5	DOWNSTREAM Cyp28d1 INTRON CG7742	TF binding site mE1_TFBS_cad
2L	9883289	2L_9883289_SNP [dm3] 2L_9883289_SNP [dm6]	T	G	1.486e^-8	2.939e^-5	INTRON nAChRalpha6
2L	16448969	2L_16448969_SNP [dm3] 2L_16448969_SNP [dm6]	C	G	1.486e^-8	2.939e^-5	START_GAINED Idgf2 UTR_5_PRIME Idgf2 UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	14122942	2L_14122942_SNP [dm3] 2L_14122942_SNP [dm6]	C	G	1.496e^-8	2.951e^-5	INTERGENIC
2L	14122944	2L_14122944_SNP [dm3] 2L_14122944_SNP [dm6]	T	G	1.496e^-8	2.951e^-5	INTERGENIC
3L	2912899	3L_2912899_SNP [dm3] 3L_2912899_SNP [dm6]	A	T	1.508e^-8	2.966e^-5	INTRON Shab
3L	2912959	3L_2912959_SNP [dm3] 3L_2912959_SNP [dm6]	C	T	1.508e^-8	2.966e^-5	INTRON Shab
3L	2913129	3L_2913129_SNP [dm3] 3L_2913129_SNP [dm6]	G	A	1.508e^-8	2.966e^-5	INTRON Shab
3L	9297662	3L_9297662_SNP [dm3] 3L_9304562_SNP [dm6]	C	G	1.512e^-8	2.970e^-5	INTERGENIC
3R	420322	3R_420322_SNP [dm3] 3R_4594600_SNP [dm6]	C	T	1.522e^-8	2.987e^-5	INTERGENIC
2R	11957174	2R_11957174_SNP [dm3] 2R_16069669_SNP [dm6]	C	G	1.528e^-8	2.996e^-5	INTERGENIC
2R	4269720	2R_4269720_SNP [dm3] 2R_8382215_SNP [dm6]	A	G	1.530e^-8	2.997e^-5	INTRON pdm3
2L	19375641	2L_19375641_INS [dm3] 2L_19375641_INS [dm6]	T	TATATCCTGTATATTAT...	1.549e^-8	3.030e^-5	INTERGENIC
2L	5229751	2L_5229751_SNP [dm3] 2L_5229751_SNP [dm6]	G	A	1.568e^-8	3.065e^-5	INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4238953	X_4238953_SNP [dm3] X_4344920_SNP [dm6]	T	C	1.578e^-8	3.081e^-5	INTRON norpA
2R	2909298	2R_2909298_SNP [dm3] 2R_7021793_SNP [dm6]	G	C	1.584e^-8	3.089e^-5	INTERGENIC
2R	10162038	2R_10162038_SNP [dm3] 2R_14274533_SNP [dm6]	C	T	1.599e^-8	3.115e^-5	SYNONYMOUS_CODING conv
2R	8783282	2R_8783282_SNP [dm3] 2R_12895777_SNP [dm6]	C	T	1.604e^-8	3.121e^-5	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9130124	2L_9130124_INS [dm3] 2L_9130124_INS [dm6]	G	GG	1.606e^-8	3.123e^-5	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15973853	3R_15973853_SNP [dm3] 3R_20148131_SNP [dm6]	C	T	1.608e^-8	3.123e^-5	INTERGENIC
X	11337528	X_11337528_SNP [dm3] X_11443495_SNP [dm6]	C	A	1.616e^-8	3.129e^-5	INTRON Evi5 & 1 other
X	3485824	X_3485824_SNP [dm3] X_3591791_SNP [dm6]	A	C	1.617e^-8	3.129e^-5	INTRON AstA-R1
2L	7680135	2L_7680135_SNP [dm3] 2L_7680135_SNP [dm6]	C	A	1.618e^-8	3.129e^-5	INTRON Myo28B1
2L	7680142	2L_7680142_DEL [dm3] 2L_7680142_DEL [dm6]	TAATTAAGAGTGGCACGGGT...	T	1.618e^-8	3.129e^-5	INTRON Myo28B1
2L	5116290	2L_5116290_INS [dm3] 2L_5116290_INS [dm6]	A	ACATA	1.639e^-8	3.167e^-5	INTRON Msp300
3R	10297920	3R_10297920_SNP [dm3] 3R_14472198_SNP [dm6]	T	C	1.646e^-8	3.177e^-5	INTRON cv-c
3R	14528892	3R_14528892_SNP [dm3] 3R_18703170_SNP [dm6]	A	G	1.653e^-8	3.187e^-5	INTERGENIC
2L	4757438	2L_4757438_SNP [dm3] 2L_4757438_SNP [dm6]	C	G	1.670e^-8	3.217e^-5	INTRON CG15630
2L	4861682	2L_4861682_SNP [dm3] 2L_4861682_SNP [dm6]	T	A	1.682e^-8	3.237e^-5	INTRON pog
3R	17985229	3R_17985229_SNP [dm3] 3R_22159507_SNP [dm6]	C	T	1.717e^-8	3.293e^-5	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	14962030	3L_14962030_MNP [dm3] 3L_14968930_MNP [dm6]	AGT	CTC	1.718e^-8	3.293e^-5	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14962058	3L_14962058_SNP [dm3] 3L_14968958_SNP [dm6]	C	T	1.718e^-8	3.293e^-5	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4257998	2R_4257998_SNP [dm3] 2R_8370493_SNP [dm6]	T	C	1.719e^-8	3.293e^-5	UPSTREAM CG2127 & 1 other INTRON pdm3
3R	13722160	3R_13722160_SNP [dm3] 3R_17896438_SNP [dm6]	T	A	1.739e^-8	3.329e^-5	INTRON Rim
3L	1346998	3L_1346998_SNP [dm3] 3L_1346998_SNP [dm6]	C	G	1.760e^-8	3.359e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	1347017	3L_1347017_SNP [dm3] 3L_1347017_SNP [dm6]	C	T	1.760e^-8	3.359e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	1347120	3L_1347120_SNP [dm3] 3L_1347120_SNP [dm6]	C	T	1.760e^-8	3.359e^-5	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	19806551	2L_19806551_SNP [dm3] 2L_19806551_SNP [dm6]	G	A	1.762e^-8	3.359e^-5	INTRON sick
3L	9557187	3L_9557187_SNP [dm3] 3L_9564087_SNP [dm6]	T	A	1.767e^-8	3.365e^-5	INTRON CG42673
3L	16494194	3L_16494194_SNP [dm3] 3L_16501094_SNP [dm6]	A	T	1.775e^-8	3.377e^-5	DOWNSTREAM st & 1 other INTRON CG43373
3L	5587898	3L_5587898_SNP [dm3] 3L_5594798_SNP [dm6]	C	T	1.801e^-8	3.423e^-5	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
2L	20475479	2L_20475479_SNP [dm3] 2L_20475479_SNP [dm6]	T	A	1.807e^-8	3.430e^-5	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
3L	5587922	3L_5587922_SNP [dm3] 3L_5594822_SNP [dm6]	T	C	1.818e^-8	3.446e^-5	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
2L	5231680	2L_5231680_SNP [dm3] 2L_5231680_SNP [dm6]	C	G	1.819e^-8	3.446e^-5	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
2L	9883614	2L_9883614_DEL [dm3] 2L_9883614_DEL [dm6]	AA	A	1.842e^-8	3.487e^-5	INTRON nAChRalpha6
X	8236001	X_8236001_SNP [dm3] X_8341968_SNP [dm6]	T	C	1.847e^-8	3.492e^-5	INTRON nAChRalpha3
2R	6947187	2R_6947187_DEL [dm3] 2R_11059682_DEL [dm6]	AAGTCAGTTGAAAGCAGAGA...	A	1.861e^-8	3.515e^-5	INTRON luna
3L	2910943	3L_2910943_SNP [dm3] 3L_2910943_SNP [dm6]	C	G	1.867e^-8	3.523e^-5	INTRON Shab
X	20979015	X_20979015_SNP [dm3] X_21107988_SNP [dm6]	A	T	1.879e^-8	3.542e^-5	INTRON stg1 & 1 other
3L	1305378	3L_1305378_SNP [dm3] 3L_1305378_SNP [dm6]	C	A	1.883e^-8	3.546e^-5	UTR_3_PRIME CG2277 DOWNSTREAM CG9149
2L	4861622	2L_4861622_SNP [dm3] 2L_4861622_SNP [dm6]	T	C	1.898e^-8	3.563e^-5	INTRON pog
2L	4861699	2L_4861699_SNP [dm3] 2L_4861699_SNP [dm6]	T	A	1.898e^-8	3.563e^-5	INTRON pog
2L	4861702	2L_4861702_SNP [dm3] 2L_4861702_SNP [dm6]	A	G	1.898e^-8	3.563e^-5	INTRON pog
3R	18132558	3R_18132558_DEL [dm3] 3R_22306836_DEL [dm6]	ATGAA	A	1.902e^-8	3.565e^-5	INTERGENIC
2L	5217000	2L_5217000_SNP [dm3] 2L_5217000_SNP [dm6]	C	A	1.903e^-8	3.565e^-5	UPSTREAM CG14034 & 1 other INTRON TpnC25D
3R	20466223	3R_20466223_SNP [dm3] 3R_24640501_SNP [dm6]	G	A	1.919e^-8	3.591e^-5	SYNONYMOUS_CODING puf
3R	10763543	3R_10763543_SNP [dm3] 3R_14937821_SNP [dm6]	A	C	1.949e^-8	3.644e^-5	INTERGENIC
3L	3882740	3L_3882740_SNP [dm3] 3L_3882740_SNP [dm6]	G	T	1.956e^-8	3.654e^-5	INTERGENIC
X	13676455	X_13676455_SNP [dm3] X_13782422_SNP [dm6]	C	A	1.959e^-8	3.656e^-5	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2913227	3L_2913227_SNP [dm3] 3L_2913227_SNP [dm6]	G	A	1.970e^-8	3.673e^-5	INTRON Shab
2L	5221439	2L_5221439_INS [dm3] 2L_5221439_INS [dm6]	T	TTTT	1.978e^-8	3.682e^-5	INTRON tkv	TF binding site mE1_TFBS_cad
2L	3974833	2L_3974833_SNP [dm3] 2L_3974833_SNP [dm6]	T	G	1.979e^-8	3.682e^-5	INTRON fred

By genomic position
Variant impact
Gene name

Microbiota_OTU009 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results