©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
X | 18597817 | X_18597817_SNP [dm3] X_18703784_SNP [dm6] | A | T | 4.275e-10 | 5.232e-4 |
INTERGENIC
|
||
X | 18597808 | X_18597808_SNP [dm3] X_18703775_SNP [dm6] | A | T | 6.413e-10 | 5.232e-4 |
INTERGENIC
|
||
3L | 11252593 | 3L_11252593_SNP [dm3] 3L_11259493_SNP [dm6] | C | T | 1.020e-9 | 5.232e-4 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
X | 18597814 | X_18597814_SNP [dm3] X_18703781_SNP [dm6] | G | T | 1.125e-9 | 5.232e-4 |
INTERGENIC
|
||
3L | 7203759 | 3L_7203759_DEL [dm3] 3L_7210659_DEL [dm6] | CTTCTTCC | C | 2.348e-9 | 8.737e-4 |
INTERGENIC
|
TF binding site
mE1_TFBS_inv
|
|
3R | 26878460 | 3R_26878460_SNP [dm3] 3R_31052738_SNP [dm6] | T | C | 4.176e-9 | 0.001 |
UTR_3_PRIME
l_3_03670 DOWNSTREAM Aph-4 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sbb
|
|
3R | 27069334 | 3R_27069334_SNP [dm3] 3R_31243612_SNP [dm6] | T | C | 5.605e-9 | 0.001 |
INTRON
qless |
||
2R | 9176923 | 2R_9176923_SNP [dm3] 2R_13289418_SNP [dm6] | A | T | 9.439e-9 | 0.002 |
INTRON
Dh31-R |
||
X | 21931684 | X_21931684_SNP [dm3] X_22529848_SNP [dm6] | T | G | 1.670e-8 | 0.003 |
UPSTREAM
S6kII INTRON CG17600 |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
|
|
2R | 10796259 | 2R_10796259_DEL [dm3] 2R_14908754_DEL [dm6] | TATA | T | 2.917e-8 | 0.005 |
UPSTREAM
CG10249 INTRON CG10249 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3R | 7515427 | 3R_7515427_SNP [dm3] 3R_11689705_SNP [dm6] | T | A | 3.323e-8 | 0.005 |
DOWNSTREAM
CG18765 INTRON CG6908 |
||
3R | 7515611 | 3R_7515611_SNP [dm3] 3R_11689889_SNP [dm6] | C | T | 3.323e-8 | 0.005 |
SYNONYMOUS_CODING
CG6908 DOWNSTREAM CG18765 |
TF binding site
mE1_TFBS_cnc
|
|
3R | 26070203 | 3R_26070203_SNP [dm3] 3R_30244481_SNP [dm6] | G | C | 3.378e-8 | 0.005 |
SYNONYMOUS_CODING
CG9733 |
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3L | 3786620 | 3L_3786620_SNP [dm3] 3L_3786620_SNP [dm6] | T | A | 3.851e-8 | 0.005 |
INTRON
CG32264 |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
|
|
3L | 11264726 | 3L_11264726_SNP [dm3] 3L_11271626_SNP [dm6] | G | A | 5.086e-8 | 0.006 |
INTERGENIC
|
||
2R | 18592229 | 2R_18592229_SNP [dm3] 2R_22704724_SNP [dm6] | T | C | 5.116e-8 | 0.006 |
SYNONYMOUS_CODING
Obp58b UPSTREAM CG30259 DOWNSTREAM Obp59a |
||
2R | 14457349 | 2R_14457349_DEL [dm3] 2R_18569844_DEL [dm6] | TG | T | 6.241e-8 | 0.007 |
INTRON
GEFmeso |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_chinmo
|
|
3R | 5055986 | 3R_5055986_SNP [dm3] 3R_9230264_SNP [dm6] | C | A | 6.602e-8 | 0.007 |
INTRON
pum EXON CR45196 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
|
|
3R | 5070962 | 3R_5070962_SNP [dm3] 3R_9245240_SNP [dm6] | G | A | 8.487e-8 | 0.008 |
INTRON
ird1 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_sens
|
|
3R | 7524523 | 3R_7524523_SNP [dm3] 3R_11698801_SNP [dm6] | T | G | 9.827e-8 | 0.009 |
DOWNSTREAM
CG14717 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_slp1
|
|
2R | 5085833 | 2R_5085833_SNP [dm3] 2R_9198328_SNP [dm6] | A | C | 1.092e-7 | 0.01 |
INTRON
unpg |
transposable element
FlyBase
|
|
3L | 5847440 | 3L_5847440_SNP [dm3] 3L_5854340_SNP [dm6] | C | T | 1.438e-7 | 0.011 |
INTERGENIC
|
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3L | 5847467 | 3L_5847467_SNP [dm3] 3L_5854367_SNP [dm6] | G | A | 1.728e-7 | 0.011 |
INTERGENIC
|
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3R | 3685944 | 3R_3685944_SNP [dm3] 3R_7860222_SNP [dm6] | A | G | 1.732e-7 | 0.011 |
INTRON
CG17816 |
||
3L | 11252598 | 3L_11252598_DEL [dm3] 3L_11259498_DEL [dm6] | TT | T | 1.746e-7 | 0.011 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3L | 10095342 | 3L_10095342_SNP [dm3] 3L_10102242_SNP [dm6] | A | C | 1.760e-7 | 0.011 |
INTRON
dpr6 |
||
3L | 10095350 | 3L_10095350_SNP [dm3] 3L_10102250_SNP [dm6] | C | T | 1.760e-7 | 0.011 |
INTRON
dpr6 |
||
2R | 9381001 | 2R_9381001_SNP [dm3] 2R_13493496_SNP [dm6] | G | A | 1.774e-7 | 0.011 |
INTRON
bbc |
||
2R | 9381806 | 2R_9381806_SNP [dm3] 2R_13494301_SNP [dm6] | A | T | 1.774e-7 | 0.011 |
SYNONYMOUS_CODING
bbc DOWNSTREAM drk |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_sens
|
|
X | 3790717 | X_3790717_SNP [dm3] X_3896684_SNP [dm6] | G | A | 1.800e-7 | 0.011 |
INTRON
CG42541 |
||
X | 8802853 | X_8802853_SNP [dm3] X_8908820_SNP [dm6] | G | T | 1.857e-7 | 0.011 |
INTRON
rdgA |
TF binding site
mE1_TFBS_HSA mE1_TFBS_Trl
|
|
X | 994042 | X_994042_SNP [dm3] X_1100009_SNP [dm6] | G | T | 1.936e-7 | 0.011 |
INTRON
CG3655 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
3R | 26236589 | 3R_26236589_SNP [dm3] 3R_30410867_SNP [dm6] | A | C | 2.087e-7 | 0.011 |
INTERGENIC
|
||
3R | 26236749 | 3R_26236749_SNP [dm3] 3R_30411027_SNP [dm6] | C | A | 2.087e-7 | 0.011 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_slp1
|
|
X | 9819355 | X_9819355_SNP [dm3] X_9925322_SNP [dm6] | C | A | 2.203e-7 | 0.012 |
INTERGENIC
|
||
2R | 14458440 | 2R_14458440_SNP [dm3] 2R_18570935_SNP [dm6] | G | A | 2.396e-7 | 0.012 |
INTRON
GEFmeso |
||
2R | 14458671 | 2R_14458671_SNP [dm3] 2R_18571166_SNP [dm6] | G | C | 2.396e-7 | 0.012 |
INTRON
GEFmeso |
||
X | 21910670 | X_21910670_SNP [dm3] X_22508834_SNP [dm6] | G | A | 3.309e-7 | 0.015 |
DOWNSTREAM
l_1_G0196 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl
|
|
3R | 13049182 | 3R_13049182_SNP [dm3] 3R_17223460_SNP [dm6] | A | G | 3.320e-7 | 0.015 |
UPSTREAM
CG31262 INTERGENIC |
||
3R | 13049889 | 3R_13049889_SNP [dm3] 3R_17224167_SNP [dm6] | G | A | 3.320e-7 | 0.015 |
INTERGENIC
|
||
3R | 13052484 | 3R_13052484_SNP [dm3] 3R_17226762_SNP [dm6] | A | T | 3.320e-7 | 0.015 |
INTERGENIC
|
||
3R | 13052816 | 3R_13052816_SNP [dm3] 3R_17227094_SNP [dm6] | T | C | 3.320e-7 | 0.015 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_twi
|
|
X | 9901008 | X_9901008_SNP [dm3] X_10006975_SNP [dm6] | G | A | 3.625e-7 | 0.016 |
DOWNSTREAM
CG32694 INTERGENIC |
||
3L | 2062396 | 3L_2062396_SNP [dm3] 3L_2062396_SNP [dm6] | T | G | 3.677e-7 | 0.016 |
INTRON
sls |
||
3R | 23490827 | 3R_23490827_SNP [dm3] 3R_27665105_SNP [dm6] | C | A | 4.197e-7 | 0.016 |
SYNONYMOUS_CODING
unc80 |
TF binding site
mE1_TFBS_cad
|
|
2R | 14458441 | 2R_14458441_SNP [dm3] 2R_18570936_SNP [dm6] | G | A | 4.392e-7 | 0.016 |
INTRON
GEFmeso |
||
3R | 13049295 | 3R_13049295_SNP [dm3] 3R_17223573_SNP [dm6] | C | G | 4.394e-7 | 0.016 |
UPSTREAM
CG31262 INTERGENIC |
||
3L | 5846589 | 3L_5846589_SNP [dm3] 3L_5853489_SNP [dm6] | T | A | 4.476e-7 | 0.016 |
INTERGENIC
|
||
3L | 5846745 | 3L_5846745_SNP [dm3] 3L_5853645_SNP [dm6] | G | T | 4.476e-7 | 0.016 |
INTERGENIC
|
||
3L | 5847291 | 3L_5847291_SNP [dm3] 3L_5854191_SNP [dm6] | G | T | 4.476e-7 | 0.016 |
INTERGENIC
|
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
X | 17874126 | X_17874126_SNP [dm3] X_17980093_SNP [dm6] | T | C | 4.476e-7 | 0.016 |
INTRON
Sh |
||
2R | 19402895 | 2R_19402895_SNP [dm3] 2R_23515372_SNP [dm6] | G | A | 4.815e-7 | 0.016 |
INTERGENIC
|
||
2R | 19402896 | 2R_19402896_SNP [dm3] 2R_23515373_SNP [dm6] | G | A | 4.815e-7 | 0.016 |
INTERGENIC
|
||
3L | 14727743 | 3L_14727743_SNP [dm3] 3L_14734643_SNP [dm6] | A | G | 4.996e-7 | 0.016 |
INTRON
ome |
||
X | 8804240 | X_8804240_SNP [dm3] X_8910207_SNP [dm6] | T | A | 5.008e-7 | 0.016 |
INTRON
rdgA |
||
3R | 26071981 | 3R_26071981_SNP [dm3] 3R_30246259_SNP [dm6] | A | C | 5.095e-7 | 0.016 |
INTRON
CG9733 |
||
3L | 5430560 | 3L_5430560_SNP [dm3] 3L_5437460_SNP [dm6] | G | A | 5.109e-7 | 0.016 |
INTRON
CG34391 |
||
2R | 10537633 | 2R_10537633_SNP [dm3] 2R_14650128_SNP [dm6] | T | A | 5.138e-7 | 0.016 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
2R | 3188486 | 2R_3188486_SNP [dm3] 2R_7300981_SNP [dm6] | G | A | 5.300e-7 | 0.017 |
DOWNSTREAM
pwn INTERGENIC |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
|
|
X | 18597721 | X_18597721_SNP [dm3] X_18703688_SNP [dm6] | T | A | 5.673e-7 | 0.017 |
INTERGENIC
|
||
3R | 10628528 | 3R_10628528_SNP [dm3] 3R_14802806_SNP [dm6] | G | C | 5.709e-7 | 0.017 |
SYNONYMOUS_CODING
CG14857 |
||
X | 18996659 | X_18996659_SNP [dm3] X_19102626_SNP [dm6] | A | G | 5.935e-7 | 0.018 |
INTERGENIC
|
||
3R | 27229492 | 3R_27229492_SNP [dm3] 3R_31403770_SNP [dm6] | A | T | 6.540e-7 | 0.018 |
SYNONYMOUS_CODING
CG11337 |
TF binding site
mE1_TFBS_cad mE1_TFBS_sens
|
|
X | 17872212 | X_17872212_SNP [dm3] X_17978179_SNP [dm6] | A | G | 6.583e-7 | 0.018 |
INTRON
Sh |
||
2R | 10796258 | 2R_10796258_SNP [dm3] 2R_14908753_SNP [dm6] | C | A | 6.625e-7 | 0.018 |
UPSTREAM
CG10249 INTRON CG10249 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3L | 3350119 | 3L_3350119_DEL [dm3] 3L_3350119_DEL [dm6] | CT | C | 6.675e-7 | 0.018 |
UTR_5_PRIME
kst INTRON kst |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
3L | 3350128 | 3L_3350128_SNP [dm3] 3L_3350128_SNP [dm6] | G | C | 6.675e-7 | 0.018 |
UTR_5_PRIME
kst INTRON kst |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 15632887 | 3R_15632887_SNP [dm3] 3R_19807165_SNP [dm6] | A | T | 6.885e-7 | 0.018 |
INTRON
bnl |
TF binding site
BDTNP1_TFBS_prd BDTNP1_TFBS_twi
|
|
3R | 27201619 | 3R_27201619_SNP [dm3] 3R_31375897_SNP [dm6] | G | A | 6.939e-7 | 0.018 |
INTERGENIC
|
||
2R | 9107654 | 2R_9107654_SNP [dm3] 2R_13220149_SNP [dm6] | G | C | 7.009e-7 | 0.018 |
NON_SYNONYMOUS_CODING
CG4646 UPSTREAM CG4630 & 1 other DOWNSTREAM Fsn |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
|
|
3R | 5056680 | 3R_5056680_SNP [dm3] 3R_9230958_SNP [dm6] | G | A | 7.092e-7 | 0.018 |
DOWNSTREAM
CR45196 INTRON pum |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
|
|
3R | 5057505 | 3R_5057505_SNP [dm3] 3R_9231783_SNP [dm6] | G | A | 7.092e-7 | 0.018 |
INTRON
pum |
TF binding site
mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
|
|
3R | 5059052 | 3R_5059052_SNP [dm3] 3R_9233330_SNP [dm6] | A | C | 7.092e-7 | 0.018 |
INTRON
pum |
TF binding site
BDTNP1_TFBS_dl
|
|
X | 14752721 | X_14752721_SNP [dm3] X_14858688_SNP [dm6] | T | C | 7.137e-7 | 0.018 |
INTRON
Flo2 |
||
3L | 17607652 | 3L_17607652_SNP [dm3] 3L_17614552_SNP [dm6] | G | A | 7.713e-7 | 0.019 |
INTRON
Eip74EF |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3L | 16287768 | 3L_16287768_SNP [dm3] 3L_16294668_SNP [dm6] | T | A | 7.805e-7 | 0.019 |
DOWNSTREAM
CG4962 INTERGENIC |
||
3R | 26236645 | 3R_26236645_SNP [dm3] 3R_30410923_SNP [dm6] | C | G | 7.923e-7 | 0.019 |
INTERGENIC
|
||
3L | 5845188 | 3L_5845188_SNP [dm3] 3L_5852088_SNP [dm6] | G | A | 8.006e-7 | 0.019 |
INTERGENIC
|
||
2R | 14457366 | 2R_14457366_SNP [dm3] 2R_18569861_SNP [dm6] | G | T | 8.539e-7 | 0.02 |
INTRON
GEFmeso |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_chinmo
|
|
2R | 14457367 | 2R_14457367_SNP [dm3] 2R_18569862_SNP [dm6] | C | T | 8.539e-7 | 0.02 |
INTRON
GEFmeso |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_chinmo
|
|
3L | 5844025 | 3L_5844025_INS [dm3] 3L_5850925_INS [dm6] | C | CTGGC | 8.930e-7 | 0.021 |
INTERGENIC
|
||
3L | 12870782 | 3L_12870782_INS [dm3] 3L_12877682_INS [dm6] | T | TATT | 9.184e-7 | 0.021 |
INTERGENIC
|
||
X | 18183006 | X_18183006_SNP [dm3] X_18288973_SNP [dm6] | C | A | 9.507e-7 | 0.021 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
|
|
3R | 13038783 | 3R_13038783_SNP [dm3] 3R_17213061_SNP [dm6] | G | A | 9.702e-7 | 0.021 |
INTERGENIC
|
||
3R | 26878469 | 3R_26878469_INS [dm3] 3R_31052747_INS [dm6] | A | AA | 1.007e-6 | 0.022 |
UTR_3_PRIME
l_3_03670 DOWNSTREAM Aph-4 |
TF binding site
mE1_TFBS_sbb
|
|
3L | 3531619 | 3L_3531619_SNP [dm3] 3L_3531619_SNP [dm6] | C | T | 1.032e-6 | 0.022 |
INTRON
Eip63E |
||
X | 9901037 | X_9901037_SNP [dm3] X_10007004_SNP [dm6] | T | C | 1.221e-6 | 0.026 |
DOWNSTREAM
CG32694 INTERGENIC |
||
3R | 13926543 | 3R_13926543_SNP [dm3] 3R_18100821_SNP [dm6] | G | A | 1.252e-6 | 0.026 |
INTRON
sr |
||
2R | 20203446 | 2R_20203446_SNP [dm3] 2R_24315923_SNP [dm6] | G | A | 1.307e-6 | 0.026 |
INTERGENIC
|
||
2R | 20580301 | 2R_20580301_SNP [dm3] 2R_24692778_SNP [dm6] | G | A | 1.313e-6 | 0.026 |
SYNONYMOUS_CODING
ST6Gal |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo
|
|
X | 8803328 | X_8803328_SNP [dm3] X_8909295_SNP [dm6] | T | G | 1.321e-6 | 0.026 |
INTRON
rdgA |
||
2R | 3191827 | 2R_3191827_SNP [dm3] 2R_7304322_SNP [dm6] | A | T | 1.324e-6 | 0.026 |
INTERGENIC
|
||
3R | 7520556 | 3R_7520556_SNP [dm3] 3R_11694834_SNP [dm6] | G | T | 1.342e-6 | 0.026 |
UPSTREAM
Fer3 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
|
|
3R | 7520558 | 3R_7520558_SNP [dm3] 3R_11694836_SNP [dm6] | A | G | 1.342e-6 | 0.026 |
UPSTREAM
Fer3 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
|
|
3R | 7520595 | 3R_7520595_SNP [dm3] 3R_11694873_SNP [dm6] | T | A | 1.342e-6 | 0.026 |
UPSTREAM
Fer3 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
|
|
X | 8804100 | X_8804100_INS [dm3] X_8910067_INS [dm6] | A | AC | 1.478e-6 | 0.029 |
INTRON
rdgA |
||
2R | 17135027 | 2R_17135027_SNP [dm3] 2R_21247522_SNP [dm6] | A | T | 1.512e-6 | 0.029 |
INTRON
ASPP |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
|
|
X | 18597730 | X_18597730_SNP [dm3] X_18703697_SNP [dm6] | A | T | 1.535e-6 | 0.029 |
INTERGENIC
|
||
X | 18597731 | X_18597731_SNP [dm3] X_18703698_SNP [dm6] | T | A | 1.535e-6 | 0.029 |
INTERGENIC
|
||
3L | 10530386 | 3L_10530386_SNP [dm3] 3L_10537286_SNP [dm6] | T | A | 1.592e-6 | 0.03 |
INTRON
A2bp1 |