DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.067e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.006865
In_2R_NS	0.084160
In_3R_P	0.005919

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	8.9428	0.0114

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3946 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	18597817	X_18597817_SNP [dm3] X_18703784_SNP [dm6]	A	T	4.275e^-10	5.232e^-4	INTERGENIC
X	18597808	X_18597808_SNP [dm3] X_18703775_SNP [dm6]	A	T	6.413e^-10	5.232e^-4	INTERGENIC
3L	11252593	3L_11252593_SNP [dm3] 3L_11259493_SNP [dm6]	C	T	1.020e^-9	5.232e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18597814	X_18597814_SNP [dm3] X_18703781_SNP [dm6]	G	T	1.125e^-9	5.232e^-4	INTERGENIC
3L	7203759	3L_7203759_DEL [dm3] 3L_7210659_DEL [dm6]	CTTCTTCC	C	2.348e^-9	8.737e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26878460	3R_26878460_SNP [dm3] 3R_31052738_SNP [dm6]	T	C	4.176e^-9	0.001	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27069334	3R_27069334_SNP [dm3] 3R_31243612_SNP [dm6]	T	C	5.605e^-9	0.001	INTRON qless
2R	9176923	2R_9176923_SNP [dm3] 2R_13289418_SNP [dm6]	A	T	9.439e^-9	0.002	INTRON Dh31-R
X	21931684	X_21931684_SNP [dm3] X_22529848_SNP [dm6]	T	G	1.670e^-8	0.003	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10796259	2R_10796259_DEL [dm3] 2R_14908754_DEL [dm6]	TATA	T	2.917e^-8	0.005	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7515427	3R_7515427_SNP [dm3] 3R_11689705_SNP [dm6]	T	A	3.323e^-8	0.005	DOWNSTREAM CG18765 INTRON CG6908
3R	7515611	3R_7515611_SNP [dm3] 3R_11689889_SNP [dm6]	C	T	3.323e^-8	0.005	SYNONYMOUS_CODING CG6908 DOWNSTREAM CG18765	TF binding site mE1_TFBS_cnc
3R	26070203	3R_26070203_SNP [dm3] 3R_30244481_SNP [dm6]	G	C	3.378e^-8	0.005	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3786620	3L_3786620_SNP [dm3] 3L_3786620_SNP [dm6]	T	A	3.851e^-8	0.005	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11264726	3L_11264726_SNP [dm3] 3L_11271626_SNP [dm6]	G	A	5.086e^-8	0.006	INTERGENIC
2R	18592229	2R_18592229_SNP [dm3] 2R_22704724_SNP [dm6]	T	C	5.116e^-8	0.006	SYNONYMOUS_CODING Obp58b UPSTREAM CG30259 DOWNSTREAM Obp59a
2R	14457349	2R_14457349_DEL [dm3] 2R_18569844_DEL [dm6]	TG	T	6.241e^-8	0.007	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	5055986	3R_5055986_SNP [dm3] 3R_9230264_SNP [dm6]	C	A	6.602e^-8	0.007	INTRON pum EXON CR45196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	5070962	3R_5070962_SNP [dm3] 3R_9245240_SNP [dm6]	G	A	8.487e^-8	0.008	INTRON ird1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	7524523	3R_7524523_SNP [dm3] 3R_11698801_SNP [dm6]	T	G	9.827e^-8	0.009	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	5085833	2R_5085833_SNP [dm3] 2R_9198328_SNP [dm6]	A	C	1.092e^-7	0.01	INTRON unpg	transposable element FlyBase
3L	5847440	3L_5847440_SNP [dm3] 3L_5854340_SNP [dm6]	C	T	1.438e^-7	0.011	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5847467	3L_5847467_SNP [dm3] 3L_5854367_SNP [dm6]	G	A	1.728e^-7	0.011	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3685944	3R_3685944_SNP [dm3] 3R_7860222_SNP [dm6]	A	G	1.732e^-7	0.011	INTRON CG17816
3L	11252598	3L_11252598_DEL [dm3] 3L_11259498_DEL [dm6]	TT	T	1.746e^-7	0.011	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10095342	3L_10095342_SNP [dm3] 3L_10102242_SNP [dm6]	A	C	1.760e^-7	0.011	INTRON dpr6
3L	10095350	3L_10095350_SNP [dm3] 3L_10102250_SNP [dm6]	C	T	1.760e^-7	0.011	INTRON dpr6
2R	9381001	2R_9381001_SNP [dm3] 2R_13493496_SNP [dm6]	G	A	1.774e^-7	0.011	INTRON bbc
2R	9381806	2R_9381806_SNP [dm3] 2R_13494301_SNP [dm6]	A	T	1.774e^-7	0.011	SYNONYMOUS_CODING bbc DOWNSTREAM drk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	3790717	X_3790717_SNP [dm3] X_3896684_SNP [dm6]	G	A	1.800e^-7	0.011	INTRON CG42541
X	8802853	X_8802853_SNP [dm3] X_8908820_SNP [dm6]	G	T	1.857e^-7	0.011	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	994042	X_994042_SNP [dm3] X_1100009_SNP [dm6]	G	T	1.936e^-7	0.011	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26236589	3R_26236589_SNP [dm3] 3R_30410867_SNP [dm6]	A	C	2.087e^-7	0.011	INTERGENIC
3R	26236749	3R_26236749_SNP [dm3] 3R_30411027_SNP [dm6]	C	A	2.087e^-7	0.011	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	9819355	X_9819355_SNP [dm3] X_9925322_SNP [dm6]	C	A	2.203e^-7	0.012	INTERGENIC
2R	14458440	2R_14458440_SNP [dm3] 2R_18570935_SNP [dm6]	G	A	2.396e^-7	0.012	INTRON GEFmeso
2R	14458671	2R_14458671_SNP [dm3] 2R_18571166_SNP [dm6]	G	C	2.396e^-7	0.012	INTRON GEFmeso
X	21910670	X_21910670_SNP [dm3] X_22508834_SNP [dm6]	G	A	3.309e^-7	0.015	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13049182	3R_13049182_SNP [dm3] 3R_17223460_SNP [dm6]	A	G	3.320e^-7	0.015	UPSTREAM CG31262 INTERGENIC
3R	13049889	3R_13049889_SNP [dm3] 3R_17224167_SNP [dm6]	G	A	3.320e^-7	0.015	INTERGENIC
3R	13052484	3R_13052484_SNP [dm3] 3R_17226762_SNP [dm6]	A	T	3.320e^-7	0.015	INTERGENIC
3R	13052816	3R_13052816_SNP [dm3] 3R_17227094_SNP [dm6]	T	C	3.320e^-7	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9901008	X_9901008_SNP [dm3] X_10006975_SNP [dm6]	G	A	3.625e^-7	0.016	DOWNSTREAM CG32694 INTERGENIC
3L	2062396	3L_2062396_SNP [dm3] 3L_2062396_SNP [dm6]	T	G	3.677e^-7	0.016	INTRON sls
3R	23490827	3R_23490827_SNP [dm3] 3R_27665105_SNP [dm6]	C	A	4.197e^-7	0.016	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2R	14458441	2R_14458441_SNP [dm3] 2R_18570936_SNP [dm6]	G	A	4.392e^-7	0.016	INTRON GEFmeso
3R	13049295	3R_13049295_SNP [dm3] 3R_17223573_SNP [dm6]	C	G	4.394e^-7	0.016	UPSTREAM CG31262 INTERGENIC
3L	5846589	3L_5846589_SNP [dm3] 3L_5853489_SNP [dm6]	T	A	4.476e^-7	0.016	INTERGENIC
3L	5846745	3L_5846745_SNP [dm3] 3L_5853645_SNP [dm6]	G	T	4.476e^-7	0.016	INTERGENIC
3L	5847291	3L_5847291_SNP [dm3] 3L_5854191_SNP [dm6]	G	T	4.476e^-7	0.016	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17874126	X_17874126_SNP [dm3] X_17980093_SNP [dm6]	T	C	4.476e^-7	0.016	INTRON Sh
2R	19402895	2R_19402895_SNP [dm3] 2R_23515372_SNP [dm6]	G	A	4.815e^-7	0.016	INTERGENIC
2R	19402896	2R_19402896_SNP [dm3] 2R_23515373_SNP [dm6]	G	A	4.815e^-7	0.016	INTERGENIC
3L	14727743	3L_14727743_SNP [dm3] 3L_14734643_SNP [dm6]	A	G	4.996e^-7	0.016	INTRON ome
X	8804240	X_8804240_SNP [dm3] X_8910207_SNP [dm6]	T	A	5.008e^-7	0.016	INTRON rdgA
3R	26071981	3R_26071981_SNP [dm3] 3R_30246259_SNP [dm6]	A	C	5.095e^-7	0.016	INTRON CG9733
3L	5430560	3L_5430560_SNP [dm3] 3L_5437460_SNP [dm6]	G	A	5.109e^-7	0.016	INTRON CG34391
2R	10537633	2R_10537633_SNP [dm3] 2R_14650128_SNP [dm6]	T	A	5.138e^-7	0.016	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3188486	2R_3188486_SNP [dm3] 2R_7300981_SNP [dm6]	G	A	5.300e^-7	0.017	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	18597721	X_18597721_SNP [dm3] X_18703688_SNP [dm6]	T	A	5.673e^-7	0.017	INTERGENIC
3R	10628528	3R_10628528_SNP [dm3] 3R_14802806_SNP [dm6]	G	C	5.709e^-7	0.017	SYNONYMOUS_CODING CG14857
X	18996659	X_18996659_SNP [dm3] X_19102626_SNP [dm6]	A	G	5.935e^-7	0.018	INTERGENIC
3R	27229492	3R_27229492_SNP [dm3] 3R_31403770_SNP [dm6]	A	T	6.540e^-7	0.018	SYNONYMOUS_CODING CG11337	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17872212	X_17872212_SNP [dm3] X_17978179_SNP [dm6]	A	G	6.583e^-7	0.018	INTRON Sh
2R	10796258	2R_10796258_SNP [dm3] 2R_14908753_SNP [dm6]	C	A	6.625e^-7	0.018	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3350119	3L_3350119_DEL [dm3] 3L_3350119_DEL [dm6]	CT	C	6.675e^-7	0.018	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3350128	3L_3350128_SNP [dm3] 3L_3350128_SNP [dm6]	G	C	6.675e^-7	0.018	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15632887	3R_15632887_SNP [dm3] 3R_19807165_SNP [dm6]	A	T	6.885e^-7	0.018	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	27201619	3R_27201619_SNP [dm3] 3R_31375897_SNP [dm6]	G	A	6.939e^-7	0.018	INTERGENIC
2R	9107654	2R_9107654_SNP [dm3] 2R_13220149_SNP [dm6]	G	C	7.009e^-7	0.018	NON_SYNONYMOUS_CODING CG4646 UPSTREAM CG4630 & 1 other DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5056680	3R_5056680_SNP [dm3] 3R_9230958_SNP [dm6]	G	A	7.092e^-7	0.018	DOWNSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	5057505	3R_5057505_SNP [dm3] 3R_9231783_SNP [dm6]	G	A	7.092e^-7	0.018	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	5059052	3R_5059052_SNP [dm3] 3R_9233330_SNP [dm6]	A	C	7.092e^-7	0.018	INTRON pum	TF binding site BDTNP1_TFBS_dl
X	14752721	X_14752721_SNP [dm3] X_14858688_SNP [dm6]	T	C	7.137e^-7	0.018	INTRON Flo2
3L	17607652	3L_17607652_SNP [dm3] 3L_17614552_SNP [dm6]	G	A	7.713e^-7	0.019	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16287768	3L_16287768_SNP [dm3] 3L_16294668_SNP [dm6]	T	A	7.805e^-7	0.019	DOWNSTREAM CG4962 INTERGENIC
3R	26236645	3R_26236645_SNP [dm3] 3R_30410923_SNP [dm6]	C	G	7.923e^-7	0.019	INTERGENIC
3L	5845188	3L_5845188_SNP [dm3] 3L_5852088_SNP [dm6]	G	A	8.006e^-7	0.019	INTERGENIC
2R	14457366	2R_14457366_SNP [dm3] 2R_18569861_SNP [dm6]	G	T	8.539e^-7	0.02	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	14457367	2R_14457367_SNP [dm3] 2R_18569862_SNP [dm6]	C	T	8.539e^-7	0.02	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	5844025	3L_5844025_INS [dm3] 3L_5850925_INS [dm6]	C	CTGGC	8.930e^-7	0.021	INTERGENIC
3L	12870782	3L_12870782_INS [dm3] 3L_12877682_INS [dm6]	T	TATT	9.184e^-7	0.021	INTERGENIC
X	18183006	X_18183006_SNP [dm3] X_18288973_SNP [dm6]	C	A	9.507e^-7	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13038783	3R_13038783_SNP [dm3] 3R_17213061_SNP [dm6]	G	A	9.702e^-7	0.021	INTERGENIC
3R	26878469	3R_26878469_INS [dm3] 3R_31052747_INS [dm6]	A	AA	1.007e^-6	0.022	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_sbb
3L	3531619	3L_3531619_SNP [dm3] 3L_3531619_SNP [dm6]	C	T	1.032e^-6	0.022	INTRON Eip63E
X	9901037	X_9901037_SNP [dm3] X_10007004_SNP [dm6]	T	C	1.221e^-6	0.026	DOWNSTREAM CG32694 INTERGENIC
3R	13926543	3R_13926543_SNP [dm3] 3R_18100821_SNP [dm6]	G	A	1.252e^-6	0.026	INTRON sr
2R	20203446	2R_20203446_SNP [dm3] 2R_24315923_SNP [dm6]	G	A	1.307e^-6	0.026	INTERGENIC
2R	20580301	2R_20580301_SNP [dm3] 2R_24692778_SNP [dm6]	G	A	1.313e^-6	0.026	SYNONYMOUS_CODING ST6Gal	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8803328	X_8803328_SNP [dm3] X_8909295_SNP [dm6]	T	G	1.321e^-6	0.026	INTRON rdgA
2R	3191827	2R_3191827_SNP [dm3] 2R_7304322_SNP [dm6]	A	T	1.324e^-6	0.026	INTERGENIC
3R	7520556	3R_7520556_SNP [dm3] 3R_11694834_SNP [dm6]	G	T	1.342e^-6	0.026	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520558	3R_7520558_SNP [dm3] 3R_11694836_SNP [dm6]	A	G	1.342e^-6	0.026	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520595	3R_7520595_SNP [dm3] 3R_11694873_SNP [dm6]	T	A	1.342e^-6	0.026	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	8804100	X_8804100_INS [dm3] X_8910067_INS [dm6]	A	AC	1.478e^-6	0.029	INTRON rdgA
2R	17135027	2R_17135027_SNP [dm3] 2R_21247522_SNP [dm6]	A	T	1.512e^-6	0.029	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	18597730	X_18597730_SNP [dm3] X_18703697_SNP [dm6]	A	T	1.535e^-6	0.029	INTERGENIC
X	18597731	X_18597731_SNP [dm3] X_18703698_SNP [dm6]	T	A	1.535e^-6	0.029	INTERGENIC
3L	10530386	3L_10530386_SNP [dm3] 3L_10537286_SNP [dm6]	T	A	1.592e^-6	0.03	INTRON A2bp1
3R	7520569	3R_7520569_SNP [dm3] 3R_11694847_SNP [dm6]	C	T	1.742e^-6	0.031	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17894258	3R_17894258_SNP [dm3] 3R_22068536_SNP [dm6]	A	T	1.756e^-6	0.031	INTRON how
3R	17894397	3R_17894397_SNP [dm3] 3R_22068675_SNP [dm6]	C	A	1.756e^-6	0.031	INTRON how
3R	17896037	3R_17896037_SNP [dm3] 3R_22070315_SNP [dm6]	C	A	1.756e^-6	0.031	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	9901366	X_9901366_SNP [dm3] X_10007333_SNP [dm6]	C	T	1.777e^-6	0.031	DOWNSTREAM CG32694 INTERGENIC
3R	26234558	3R_26234558_SNP [dm3] 3R_30408836_SNP [dm6]	A	G	1.901e^-6	0.033	INTERGENIC
3R	26237203	3R_26237203_SNP [dm3] 3R_30411481_SNP [dm6]	C	T	1.901e^-6	0.033	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5638780	2R_5638780_SNP [dm3] 2R_9751275_SNP [dm6]	C	A	2.098e^-6	0.036	INTERGENIC
3L	17112070	3L_17112070_INS [dm3] 3L_17118970_INS [dm6]	A	ATGCAGGA	2.105e^-6	0.036	INTRON Rbp6
3R	17891723	3R_17891723_SNP [dm3] 3R_22066001_SNP [dm6]	T	A	2.140e^-6	0.036	INTRON how
2R	9380706	2R_9380706_SNP [dm3] 2R_13493201_SNP [dm6]	C	T	2.195e^-6	0.037	INTRON bbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16261987	X_16261987_SNP [dm3] X_16367954_SNP [dm6]	T	C	2.341e^-6	0.039	UTR_3_PRIME nonA INTRON nonA	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18996109	X_18996109_INS [dm3] X_19102076_INS [dm6]	C	CTCGAAAAT	2.405e^-6	0.04	INTERGENIC
2R	20160094	2R_20160094_SNP [dm3] 2R_24272571_SNP [dm6]	G	C	2.436e^-6	0.04	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7507782	3R_7507782_SNP [dm3] 3R_11682060_SNP [dm6]	C	T	2.482e^-6	0.04	SYNONYMOUS_CODING CG6830
2R	8322734	2R_8322734_SNP [dm3] 2R_12435229_SNP [dm6]	G	C	2.606e^-6	0.042	NON_SYNONYMOUS_CODING DUBAI UPSTREAM CG30051	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20441106	X_20441106_SNP [dm3] X_20570079_SNP [dm6]	A	C	2.619e^-6	0.042	INTERGENIC
2R	3618765	2R_3618765_SNP [dm3] 2R_7731260_SNP [dm6]	T	G	2.635e^-6	0.042	INTRON CG18812
3R	5057354	3R_5057354_SNP [dm3] 3R_9231632_SNP [dm6]	G	A	2.656e^-6	0.042	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_Trl
X	20759590	X_20759590_SNP [dm3] X_20888563_SNP [dm6]	G	A	2.689e^-6	0.042	INTRON shakB
X	8803275	X_8803275_SNP [dm3] X_8909242_SNP [dm6]	A	G	3.058e^-6	0.047	INTRON rdgA
3R	7507768	3R_7507768_SNP [dm3] 3R_11682046_SNP [dm6]	C	A	3.150e^-6	0.048	NON_SYNONYMOUS_CODING CG6830
3R	17891188	3R_17891188_SNP [dm3] 3R_22065466_SNP [dm6]	G	A	3.189e^-6	0.048	INTRON how
2R	19646653	2R_19646653_SNP [dm3] 2R_23759130_SNP [dm6]	G	T	3.194e^-6	0.048	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	2813512	2R_2813512_SNP [dm3] 2R_6926007_SNP [dm6]	T	C	3.284e^-6	0.049	UTR_3_PRIME mim DOWNSTREAM mim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10890705	3R_10890705_SNP [dm3] 3R_15064983_SNP [dm6]	C	T	3.308e^-6	0.049	INTRON dpr9
2R	4727315	2R_4727315_SNP [dm3] 2R_8839810_SNP [dm6]	G	C	3.318e^-6	0.049	INTRON sns
2R	3192372	2R_3192372_SNP [dm3] 2R_7304867_SNP [dm6]	T	C	3.392e^-6	0.049	INTERGENIC
2R	3192387	2R_3192387_SNP [dm3] 2R_7304882_SNP [dm6]	C	A	3.392e^-6	0.049	INTERGENIC
X	8803288	X_8803288_SNP [dm3] X_8909255_SNP [dm6]	A	C	3.411e^-6	0.049	INTRON rdgA
3R	15240234	3R_15240234_SNP [dm3] 3R_19414512_SNP [dm6]	G	A	3.459e^-6	0.049	INTRON CG31221	TF binding site mE1_TFBS_inv
X	20234313	X_20234313_SNP [dm3] X_20363286_SNP [dm6]	G	A	3.582e^-6	0.05	INTERGENIC
2R	14456104	2R_14456104_SNP [dm3] 2R_18568599_SNP [dm6]	G	C	3.649e^-6	0.051	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6056230	3R_6056230_SNP [dm3] 3R_10230508_SNP [dm6]	T	A	3.779e^-6	0.052	INTRON CG42795
3R	5257899	3R_5257899_SNP [dm3] 3R_9432177_SNP [dm6]	C	T	3.805e^-6	0.052	UTR_5_PRIME ps UPSTREAM ps
X	8803281	X_8803281_SNP [dm3] X_8909248_SNP [dm6]	A	G	3.867e^-6	0.053	INTRON rdgA
3L	11049011	3L_11049011_DEL [dm3] 3L_11055911_DEL [dm6]	GTAGCGTGCCGCTTTTTTA...	T	3.892e^-6	0.053	INTRON CG7888
3R	20369818	3R_20369818_INS [dm3] 3R_24544096_INS [dm6]	C	CAATGCGATC	3.980e^-6	0.053	UPSTREAM CG5789 & 1 other INTERGENIC
3R	7506149	3R_7506149_SNP [dm3] 3R_11680427_SNP [dm6]	C	T	4.009e^-6	0.053	SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	9738470	X_9738470_SNP [dm3] X_9844437_SNP [dm6]	C	G	4.012e^-6	0.053	INTRON CG32698
2R	5652853	2R_5652853_SNP [dm3] 2R_9765348_SNP [dm6]	T	C	4.122e^-6	0.054	NON_SYNONYMOUS_CODING trpl UPSTREAM CR44205	TF binding site mE1_TFBS_inv
3L	19435511	3L_19435511_SNP [dm3] 3L_19442411_SNP [dm6]	T	C	4.239e^-6	0.056	INTRON CG33062
2L	7216310	2L_7216310_SNP [dm3] 2L_7216310_SNP [dm6]	T	C	4.292e^-6	0.056	INTRON CG13784
X	14021209	X_14021209_SNP [dm3] X_14127176_SNP [dm6]	C	T	4.399e^-6	0.057	INTERGENIC
X	21457568	X_21457568_SNP [dm3] X_21586541_SNP [dm6]	C	T	4.492e^-6	0.057	INTERGENIC
2R	3981204	2R_3981204_SNP [dm3] 2R_8093699_SNP [dm6]	C	G	4.504e^-6	0.057	INTRON CG8713
3R	27086372	3R_27086372_SNP [dm3] 3R_31260650_SNP [dm6]	C	T	4.526e^-6	0.057	DOWNSTREAM CG3669 INTRON CG18672
2R	19533202	2R_19533202_SNP [dm3] 2R_23645679_SNP [dm6]	C	T	4.777e^-6	0.06	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3R	14223496	3R_14223496_SNP [dm3] 3R_18397774_SNP [dm6]	A	G	4.842e^-6	0.06	UPSTREAM Vha100-2 INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	26058045	3R_26058045_SNP [dm3] 3R_30232323_SNP [dm6]	C	T	4.934e^-6	0.061	INTERGENIC
3R	26284007	3R_26284007_SNP [dm3] 3R_30458285_SNP [dm6]	G	A	4.952e^-6	0.061	SYNONYMOUS_CODING CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5058044	3R_5058044_SNP [dm3] 3R_9232322_SNP [dm6]	A	G	5.062e^-6	0.062	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_chinmo
2R	8734763	2R_8734763_SNP [dm3] 2R_12847258_SNP [dm6]	T	C	5.083e^-6	0.062	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
3L	5882243	3L_5882243_SNP [dm3] 3L_5889143_SNP [dm6]	A	T	5.260e^-6	0.064	INTERGENIC
X	3789171	X_3789171_SNP [dm3] X_3895138_SNP [dm6]	G	C	5.713e^-6	0.068	UTR_3_PRIME CG42541	insulator Insulator_Class_I.mE01
3R	15249385	3R_15249385_DEL [dm3] 3R_19423663_DEL [dm6]	AAGAGCTA	A	5.775e^-6	0.068	DOWNSTREAM CG3517 INTRON CG31221
3R	15249409	3R_15249409_SNP [dm3] 3R_19423687_SNP [dm6]	T	C	5.775e^-6	0.068	DOWNSTREAM CG3517 INTRON CG31221
3R	15249422	3R_15249422_SNP [dm3] 3R_19423700_SNP [dm6]	G	A	5.775e^-6	0.068	DOWNSTREAM CG3517 INTRON CG31221
3R	27209536	3R_27209536_DEL [dm3] 3R_31383814_DEL [dm6]	CCAGTT	C	5.779e^-6	0.068	UPSTREAM CG1607 INTRON CG1607
3L	4527306	3L_4527306_SNP [dm3] 3L_4527306_SNP [dm6]	C	A	5.924e^-6	0.069	INTRON Tie
2L	10117839	2L_10117839_SNP [dm3] 2L_10117839_SNP [dm6]	C	A	5.977e^-6	0.069	INTRON CG44153 & 1 other
3R	23723542	3R_23723542_SNP [dm3] 3R_27897820_SNP [dm6]	A	G	5.989e^-6	0.069	INTRON CG34353
3R	17904057	3R_17904057_SNP [dm3] 3R_22078335_SNP [dm6]	A	G	6.104e^-6	0.069	UTR_3_PRIME how
3R	7511546	3R_7511546_SNP [dm3] 3R_11685824_SNP [dm6]	T	C	6.106e^-6	0.069	NON_SYNONYMOUS_CODING CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22198862	3R_22198862_SNP [dm3] 3R_26373140_SNP [dm6]	G	T	6.256e^-6	0.071	INTERGENIC
3L	12860995	3L_12860995_SNP [dm3] 3L_12867895_SNP [dm6]	A	G	6.299e^-6	0.071	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5609767	X_5609767_SNP [dm3] X_5715734_SNP [dm6]	C	G	6.407e^-6	0.071	UPSTREAM CG33080 INTRON CG33080
3L	14639979	3L_14639979_SNP [dm3] 3L_14646879_SNP [dm6]	A	G	6.568e^-6	0.072	INTRON dlp
3R	4302753	3R_4302753_SNP [dm3] 3R_8477031_SNP [dm6]	A	G	6.569e^-6	0.072	INTRON CG45263	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
3R	15249403	3R_15249403_SNP [dm3] 3R_19423681_SNP [dm6]	A	G	6.781e^-6	0.074	DOWNSTREAM CG3517 INTRON CG31221
3L	6805610	3L_6805610_SNP [dm3] 3L_6812510_SNP [dm6]	C	T	6.964e^-6	0.075	INTERGENIC
2R	16851357	2R_16851357_SNP [dm3] 2R_20963852_SNP [dm6]	G	A	6.969e^-6	0.075	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7517065	3R_7517065_SNP [dm3] 3R_11691343_SNP [dm6]	T	G	7.114e^-6	0.076	SYNONYMOUS_CODING CG18765	TF binding site mE1_TFBS_sens
3R	25641664	3R_25641664_SNP [dm3] 3R_29815942_SNP [dm6]	G	A	7.156e^-6	0.076	SYNONYMOUS_CODING Vps16B DOWNSTREAM ca & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12856776	3L_12856776_SNP [dm3] 3L_12863676_SNP [dm6]	G	T	7.225e^-6	0.076	UPSTREAM CG10943 INTERGENIC
3L	16285973	3L_16285973_SNP [dm3] 3L_16292873_SNP [dm6]	A	G	7.254e^-6	0.076	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16285976	3L_16285976_SNP [dm3] 3L_16292876_SNP [dm6]	A	G	7.254e^-6	0.076	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16286002	3L_16286002_SNP [dm3] 3L_16292902_SNP [dm6]	T	G	7.254e^-6	0.076	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	20203432	2R_20203432_MNP [dm3] 2R_24315909_MNP [dm6]	GAA	AGT	7.274e^-6	0.076	INTERGENIC
X	16612508	X_16612508_DEL [dm3] X_16718475_DEL [dm6]	GG	G	7.344e^-6	0.076	INTRON CG34325
2R	19629789	2R_19629789_SNP [dm3] 2R_23742266_SNP [dm6]	C	A	7.513e^-6	0.077	INTRON egl
X	8473790	X_8473790_SNP [dm3] X_8579757_SNP [dm6]	G	A	7.619e^-6	0.077	INTRON CG12065
3L	11264702	3L_11264702_SNP [dm3] 3L_11271602_SNP [dm6]	A	T	7.671e^-6	0.077	INTERGENIC
3L	11264703	3L_11264703_SNP [dm3] 3L_11271603_SNP [dm6]	A	T	7.671e^-6	0.077	INTERGENIC
3L	12860978	3L_12860978_INS [dm3] 3L_12867878_INS [dm6]	T	TC	7.704e^-6	0.077	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26876152	3R_26876152_SNP [dm3] 3R_31050430_SNP [dm6]	A	T	7.706e^-6	0.077	DOWNSTREAM mir-4948 INTRON Aph-4	TF binding site mE1_TFBS_cad
3R	13058505	3R_13058505_SNP [dm3] 3R_17232783_SNP [dm6]	C	T	7.756e^-6	0.077	NON_SYNONYMOUS_CODING beat-IIb
3R	26999827	3R_26999827_SNP [dm3] 3R_31174105_SNP [dm6]	T	C	7.788e^-6	0.077	INTRON Gycbeta100B
2L	7236676	2L_7236676_SNP [dm3] 2L_7236676_SNP [dm6]	A	C	7.868e^-6	0.077	INTRON Ndae1
3R	22198520	3R_22198520_SNP [dm3] 3R_26372798_SNP [dm6]	T	A	7.899e^-6	0.077	INTERGENIC
3R	13552010	3R_13552010_SNP [dm3] 3R_17726288_SNP [dm6]	A	G	8.115e^-6	0.079	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16848641	2R_16848641_SNP [dm3] 2R_20961136_SNP [dm6]	A	G	8.451e^-6	0.082	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16667986	2R_16667986_SNP [dm3] 2R_20780481_SNP [dm6]	A	G	8.636e^-6	0.083	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10840320	2R_10840320_SNP [dm3] 2R_14952815_SNP [dm6]	C	T	8.649e^-6	0.083	INTRON aPKC
2L	11933443	2L_11933443_SNP [dm3] 2L_11933443_SNP [dm6]	T	C	8.759e^-6	0.083	INTERGENIC
X	21977287	X_21977287_SNP [dm3] X_22575451_SNP [dm6]	G	T	8.846e^-6	0.083	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	14453381	2R_14453381_SNP [dm3] 2R_18565876_SNP [dm6]	T	C	8.922e^-6	0.083	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3R	5276616	3R_5276616_SNP [dm3] 3R_9450894_SNP [dm6]	C	A	8.934e^-6	0.083	UTR_3_PRIME ps
X	4476158	X_4476158_SNP [dm3] X_4582125_SNP [dm6]	C	T	8.962e^-6	0.083	INTRON CR32773
3R	3571036	3R_3571036_SNP [dm3] 3R_7745314_SNP [dm6]	C	G	9.113e^-6	0.083	INTERGENIC
3R	3577382	3R_3577382_SNP [dm3] 3R_7751660_SNP [dm6]	C	G	9.113e^-6	0.083	INTERGENIC
3R	3617311	3R_3617311_SNP [dm3] 3R_7791589_SNP [dm6]	G	A	9.113e^-6	0.083	INTRON CG10086	TF binding site mE1_TFBS_cad
3R	3617347	3R_3617347_SNP [dm3] 3R_7791625_SNP [dm6]	T	G	9.113e^-6	0.083	INTRON CG10086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3618931	3R_3618931_SNP [dm3] 3R_7793209_SNP [dm6]	G	A	9.113e^-6	0.083	UTR_3_PRIME CG10086 UPSTREAM CG2641
2R	16179128	2R_16179128_SNP [dm3] 2R_20291623_SNP [dm6]	G	A	9.192e^-6	0.083	UPSTREAM CR44638 INTRON Cpr56F
X	16612657	X_16612657_INS [dm3] X_16718624_INS [dm6]	T	TG	9.336e^-6	0.084	INTRON CG34325
3R	18230807	3R_18230807_SNP [dm3] 3R_22405085_SNP [dm6]	T	G	9.538e^-6	0.085	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
2R	14455526	2R_14455526_SNP [dm3] 2R_18568021_SNP [dm6]	C	G	9.574e^-6	0.085	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	20249790	3L_20249790_DEL [dm3] 3L_20256690_DEL [dm6]	AATGGGATAGTAGGGGCTTA...	A	9.588e^-6	0.085	INTRON rdgC	TF binding site BDTNP1_TFBS_twi
3L	14767498	3L_14767498_SNP [dm3] 3L_14774398_SNP [dm6]	C	T	9.611e^-6	0.085	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_chinmo
3R	18171805	3R_18171805_SNP [dm3] 3R_22346083_SNP [dm6]	A	T	9.621e^-6	0.085	INTERGENIC
2R	20203444	2R_20203444_SNP [dm3] 2R_24315921_SNP [dm6]	T	C	9.791e^-6	0.086	INTERGENIC
X	11706021	X_11706021_SNP [dm3] X_11811988_SNP [dm6]	G	A	9.966e^-6	0.086	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5062512	3R_5062512_INS [dm3] 3R_9236790_INS [dm6]	T	TT	1.007e^-5	0.086	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	8412930	2R_8412930_SNP [dm3] 2R_12525425_SNP [dm6]	C	T	1.015e^-5	0.086	INTERGENIC
3R	12551180	3R_12551180_SNP [dm3] 3R_16725458_SNP [dm6]	C	T	1.023e^-5	0.086	INTRON Ubx
3R	11091229	3R_11091229_INS [dm3] 3R_15265507_INS [dm6]	G	GC	1.023e^-5	0.086	UPSTREAM Oscp DOWNSTREAM Set INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11094926	3R_11094926_SNP [dm3] 3R_15269204_SNP [dm6]	C	A	1.023e^-5	0.086	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	11095488	3R_11095488_SNP [dm3] 3R_15269766_SNP [dm6]	C	T	1.023e^-5	0.086	SYNONYMOUS_CODING Zip88E DOWNSTREAM Cp190	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11095846	3R_11095846_SNP [dm3] 3R_15270124_SNP [dm6]	C	G	1.023e^-5	0.086	DOWNSTREAM Cp190 INTRON Zip88E	TF binding site mE1_TFBS_HSA
2R	14458084	2R_14458084_DEL [dm3] 2R_18570579_DEL [dm6]	ATTGT	A	1.029e^-5	0.086	INTRON GEFmeso
3R	13044121	3R_13044121_SNP [dm3] 3R_17218399_SNP [dm6]	C	T	1.036e^-5	0.086	NON_SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
3R	19623772	3R_19623772_SNP [dm3] 3R_23798050_SNP [dm6]	C	A	1.042e^-5	0.086	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19623777	3R_19623777_SNP [dm3] 3R_23798055_SNP [dm6]	G	C	1.042e^-5	0.086	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19623789	3R_19623789_SNP [dm3] 3R_23798067_SNP [dm6]	G	A	1.042e^-5	0.086	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16797140	3R_16797140_SNP [dm3] 3R_20971418_SNP [dm6]	C	A	1.068e^-5	0.087	INTRON Atpalpha
3R	5279417	3R_5279417_INS [dm3] 3R_9453695_INS [dm6]	A	AACAG	1.068e^-5	0.087	UTR_3_PRIME ps
3L	20217140	3L_20217140_SNP [dm3] 3L_20224040_SNP [dm6]	T	C	1.070e^-5	0.087	DOWNSTREAM CG17145 INTRON CG17147
3L	7317518	3L_7317518_SNP [dm3] 3L_7324418_SNP [dm6]	T	C	1.078e^-5	0.087	SYNONYMOUS_CODING Rint1
3R	11108464	3R_11108464_SNP [dm3] 3R_15282742_SNP [dm6]	C	G	1.082e^-5	0.087	INTRON Tm1	TF binding site mE1_TFBS_Trl
X	4407964	X_4407964_SNP [dm3] X_4513931_SNP [dm6]	G	C	1.084e^-5	0.087	INTRON CR32773
2R	10840313	2R_10840313_SNP [dm3] 2R_14952808_SNP [dm6]	T	G	1.085e^-5	0.087	INTRON aPKC
2R	9770075	2R_9770075_SNP [dm3] 2R_13882570_SNP [dm6]	G	A	1.090e^-5	0.087	INTRON shot
3R	5071391	3R_5071391_SNP [dm3] 3R_9245669_SNP [dm6]	C	T	1.103e^-5	0.088	NON_SYNONYMOUS_CODING ird1 UPSTREAM CG8420	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3622111	3R_3622111_SNP [dm3] 3R_7796389_SNP [dm6]	C	G	1.106e^-5	0.088	NON_SYNONYMOUS_CODING CG2641 DOWNSTREAM CG18744
3L	15642813	3L_15642813_SNP [dm3] 3L_15649713_SNP [dm6]	T	C	1.123e^-5	0.088	UPSTREAM Eig71Eb & 1 other DOWNSTREAM CG43083 INTERGENIC
X	6856267	X_6856267_SNP [dm3] X_6962234_SNP [dm6]	C	T	1.129e^-5	0.088	SYNONYMOUS_CODING CG14431 INTRON CG32732
3R	21274348	3R_21274348_SNP [dm3] 3R_25448626_SNP [dm6]	A	T	1.133e^-5	0.088	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14761083	3L_14761083_SNP [dm3] 3L_14767983_SNP [dm6]	G	A	1.140e^-5	0.088	SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
3L	7316646	3L_7316646_SNP [dm3] 3L_7323546_SNP [dm6]	T	A	1.143e^-5	0.088	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	8636206	2R_8636206_SNP [dm3] 2R_12748701_SNP [dm6]	A	T	1.157e^-5	0.088	INTRON CG42663
2R	8636207	2R_8636207_SNP [dm3] 2R_12748702_SNP [dm6]	C	A	1.157e^-5	0.088	INTRON CG42663
3R	24988844	3R_24988844_SNP [dm3] 3R_29163122_SNP [dm6]	G	A	1.159e^-5	0.088	INTRON CG11897
3R	24988849	3R_24988849_SNP [dm3] 3R_29163127_SNP [dm6]	G	T	1.159e^-5	0.088	INTRON CG11897
2R	3189516	2R_3189516_SNP [dm3] 2R_7302011_SNP [dm6]	G	A	1.159e^-5	0.088	INTERGENIC
2L	5197745	2L_5197745_SNP [dm3] 2L_5197745_SNP [dm6]	T	G	1.180e^-5	0.088	INTRON Msp300
3L	9305767	3L_9305767_SNP [dm3] 3L_9312667_SNP [dm6]	C	T	1.181e^-5	0.088	INTERGENIC
3L	12864523	3L_12864523_SNP [dm3] 3L_12871423_SNP [dm6]	C	T	1.185e^-5	0.088	INTERGENIC
2R	3193701	2R_3193701_SNP [dm3] 2R_7306196_SNP [dm6]	G	A	1.192e^-5	0.088	INTERGENIC
2R	14455525	2R_14455525_SNP [dm3] 2R_18568020_SNP [dm6]	G	T	1.202e^-5	0.088	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	9743913	3R_9743913_SNP [dm3] 3R_13918191_SNP [dm6]	T	G	1.211e^-5	0.088	INTERGENIC
2L	17778740	2L_17778740_SNP [dm3] 2L_17778740_SNP [dm6]	G	A	1.211e^-5	0.088	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
X	18597653	X_18597653_SNP [dm3] X_18703620_SNP [dm6]	T	A	1.214e^-5	0.088	INTERGENIC
2R	4728304	2R_4728304_SNP [dm3] 2R_8840799_SNP [dm6]	C	T	1.215e^-5	0.088	INTRON sns	TF binding site mE1_TFBS_cad
2R	8368307	2R_8368307_SNP [dm3] 2R_12480802_SNP [dm6]	A	G	1.222e^-5	0.088	UTR_5_PRIME Dh44-R2
3R	3736357	3R_3736357_SNP [dm3] 3R_7910635_SNP [dm6]	G	A	1.222e^-5	0.088	SYNONYMOUS_CODING Prat DOWNSTREAM Taf7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6573557	X_6573557_SNP [dm3] X_6679524_SNP [dm6]	T	C	1.222e^-5	0.088	UPSTREAM l_1_G0255 & 1 other INTRON l_1_G0255
X	8803644	X_8803644_SNP [dm3] X_8909611_SNP [dm6]	G	A	1.223e^-5	0.088	INTRON rdgA
3R	25966218	3R_25966218_SNP [dm3] 3R_30140496_SNP [dm6]	T	C	1.224e^-5	0.088	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3R	27082931	3R_27082931_SNP [dm3] 3R_31257209_SNP [dm6]	G	A	1.224e^-5	0.088	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
3R	24988839	3R_24988839_SNP [dm3] 3R_29163117_SNP [dm6]	T	C	1.238e^-5	0.088	INTRON CG11897
3R	13057214	3R_13057214_SNP [dm3] 3R_17231492_SNP [dm6]	G	T	1.266e^-5	0.089	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	13057620	3R_13057620_SNP [dm3] 3R_17231898_SNP [dm6]	T	G	1.266e^-5	0.089	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	13681357	3R_13681357_SNP [dm3] 3R_17855635_SNP [dm6]	G	A	1.267e^-5	0.089	INTRON tinc
X	18597897	X_18597897_SNP [dm3] X_18703864_SNP [dm6]	A	T	1.271e^-5	0.089	INTERGENIC
X	14771613	X_14771613_SNP [dm3] X_14877580_SNP [dm6]	C	T	1.279e^-5	0.089	NON_SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
2R	14236703	2R_14236703_SNP [dm3] 2R_18349198_SNP [dm6]	T	A	1.299e^-5	0.09	INTRON sbb
3R	11107909	3R_11107909_SNP [dm3] 3R_15282187_SNP [dm6]	T	C	1.304e^-5	0.09	INTRON Tm1	TF binding site mE1_TFBS_Trl
3R	13461897	3R_13461897_SNP [dm3] 3R_17636175_SNP [dm6]	C	A	1.304e^-5	0.09	INTRON CG43175
X	21910584	X_21910584_INS [dm3] X_22508748_INS [dm6]	T	TT	1.306e^-5	0.09	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8803276	X_8803276_SNP [dm3] X_8909243_SNP [dm6]	T	A	1.316e^-5	0.09	INTRON rdgA
2R	9192574	2R_9192574_SNP [dm3] 2R_13305069_SNP [dm6]	A	G	1.320e^-5	0.09	INTERGENIC
3R	22244634	3R_22244634_SNP [dm3] 3R_26418912_SNP [dm6]	G	T	1.323e^-5	0.09	INTERGENIC
3R	22245310	3R_22245310_SNP [dm3] 3R_26419588_SNP [dm6]	G	A	1.323e^-5	0.09	INTERGENIC
2L	12966364	2L_12966364_SNP [dm3] 2L_12966364_SNP [dm6]	A	T	1.328e^-5	0.09	UPSTREAM CG16800 INTERGENIC
2R	14454202	2R_14454202_SNP [dm3] 2R_18566697_SNP [dm6]	G	T	1.345e^-5	0.091	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5056940	3R_5056940_SNP [dm3] 3R_9231218_SNP [dm6]	A	T	1.352e^-5	0.091	DOWNSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	5291082	3R_5291082_SNP [dm3] 3R_9465360_SNP [dm6]	T	C	1.355e^-5	0.091	UTR_3_PRIME CG16779
3R	5291076	3R_5291076_SNP [dm3] 3R_9465354_SNP [dm6]	T	G	1.385e^-5	0.092	UTR_3_PRIME CG16779
3R	16114919	3R_16114919_SNP [dm3] 3R_20289197_SNP [dm6]	A	C	1.414e^-5	0.093	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	7062958	3L_7062958_SNP [dm3] 3L_7069858_SNP [dm6]	T	C	1.415e^-5	0.093	UPSTREAM CG32391 INTRON CG8641
3R	10177337	3R_10177337_SNP [dm3] 3R_14351615_SNP [dm6]	A	T	1.422e^-5	0.093	INTRON NK7.1
3R	27202422	3R_27202422_SNP [dm3] 3R_31376700_SNP [dm6]	G	T	1.430e^-5	0.093	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27086381	3R_27086381_SNP [dm3] 3R_31260659_SNP [dm6]	G	A	1.432e^-5	0.093	DOWNSTREAM CG3669 INTRON CG18672
3L	11267502	3L_11267502_SNP [dm3] 3L_11274402_SNP [dm6]	G	T	1.448e^-5	0.093	EXON CR44720	TF binding site mE1_TFBS_HSA
2R	17810265	2R_17810265_INS [dm3] 2R_21922760_INS [dm6]	T	TAAAT	1.449e^-5	0.093	INTRON Fili
2R	17810301	2R_17810301_SNP [dm3] 2R_21922796_SNP [dm6]	C	T	1.449e^-5	0.093	INTRON Fili
2L	15903417	2L_15903417_SNP [dm3] 2L_15903417_SNP [dm6]	T	A	1.450e^-5	0.093	INTERGENIC
3L	13882437	3L_13882437_SNP [dm3] 3L_13889337_SNP [dm6]	T	C	1.452e^-5	0.093	INTRON dysc
3R	13059167	3R_13059167_SNP [dm3] 3R_17233445_SNP [dm6]	G	T	1.453e^-5	0.093	NON_SYNONYMOUS_CODING beat-IIb
3R	11080548	3R_11080548_SNP [dm3] 3R_15254826_SNP [dm6]	G	A	1.458e^-5	0.093	SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad
3R	26496802	3R_26496802_SNP [dm3] 3R_30671080_SNP [dm6]	C	T	1.465e^-5	0.093	INTERGENIC
3R	26496809	3R_26496809_INS [dm3] 3R_30671087_INS [dm6]	T	TCA	1.465e^-5	0.093	INTERGENIC
3R	26496811	3R_26496811_INS [dm3] 3R_30671089_INS [dm6]	G	GTATACGAAT	1.465e^-5	0.093	INTERGENIC
3R	6047398	3R_6047398_SNP [dm3] 3R_10221676_SNP [dm6]	A	G	1.475e^-5	0.093	UTR_3_PRIME Syn	TF binding site BDTNP1_TFBS_dl
3R	25658665	3R_25658665_SNP [dm3] 3R_29832943_SNP [dm6]	T	C	1.486e^-5	0.093	INTRON Atg16
3R	15249414	3R_15249414_SNP [dm3] 3R_19423692_SNP [dm6]	T	G	1.492e^-5	0.093	DOWNSTREAM CG3517 INTRON CG31221
3L	14367212	3L_14367212_SNP [dm3] 3L_14374112_SNP [dm6]	G	A	1.507e^-5	0.094	INTERGENIC
3L	6194298	3L_6194298_SNP [dm3] 3L_6201198_SNP [dm6]	A	G	1.510e^-5	0.094	NON_SYNONYMOUS_CODING CG8219 DOWNSTREAM Trn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8444980	2L_8444980_SNP [dm3] 2L_8444980_SNP [dm6]	G	A	1.525e^-5	0.094	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM U26
3R	26070190	3R_26070190_SNP [dm3] 3R_30244468_SNP [dm6]	G	A	1.532e^-5	0.094	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14772290	X_14772290_SNP [dm3] X_14878257_SNP [dm6]	C	G	1.535e^-5	0.094	NON_SYNONYMOUS_CODING CG45064 UTR_5_PRIME CG45065 INTRON Flo2
3R	17723438	3R_17723438_SNP [dm3] 3R_21897716_SNP [dm6]	T	A	1.537e^-5	0.094	INTRON CG6678
3R	10904205	3R_10904205_SNP [dm3] 3R_15078483_SNP [dm6]	A	T	1.540e^-5	0.094	DOWNSTREAM CG6974 & 1 other INTERGENIC
X	21910588	X_21910588_SNP [dm3] X_22508752_SNP [dm6]	T	C	1.550e^-5	0.094	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16282779	3L_16282779_SNP [dm3] 3L_16289679_SNP [dm6]	G	A	1.554e^-5	0.094	DOWNSTREAM CG13045 INTERGENIC
2R	10547226	2R_10547226_SNP [dm3] 2R_14659721_SNP [dm6]	A	T	1.558e^-5	0.094	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
X	10795280	X_10795280_SNP [dm3] X_10901247_SNP [dm6]	A	G	1.567e^-5	0.094	NON_SYNONYMOUS_CODING CG15208	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9791235	3L_9791235_SNP [dm3] 3L_9798135_SNP [dm6]	A	T	1.569e^-5	0.094	UPSTREAM Ilp1 & 2 others INTERGENIC
2L	3949300	2L_3949300_SNP [dm3] 2L_3949300_SNP [dm6]	G	C	1.582e^-5	0.094	INTRON fred
3R	27287694	3R_27287694_SNP [dm3] 3R_31461972_SNP [dm6]	G	A	1.583e^-5	0.094	SPLICE_SITE_REGION CG11334 INTRON CG11334	TF binding site mE1_TFBS_sens
3R	27287711	3R_27287711_SNP [dm3] 3R_31461989_SNP [dm6]	A	T	1.583e^-5	0.094	INTRON CG11334	TF binding site mE1_TFBS_sens
X	21978605	X_21978605_SNP [dm3] X_22576769_SNP [dm6]	A	C	1.590e^-5	0.094	INTERGENIC	transposable element FlyBase
3R	5060037	3R_5060037_SNP [dm3] 3R_9234315_SNP [dm6]	T	C	1.594e^-5	0.094	START_GAINED pum UTR_5_PRIME pum	TF binding site BDTNP1_TFBS_dl
2R	14455342	2R_14455342_SNP [dm3] 2R_18567837_SNP [dm6]	G	T	1.622e^-5	0.095	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	13816079	3L_13816079_SNP [dm3] 3L_13822979_SNP [dm6]	T	C	1.623e^-5	0.095	INTERGENIC
3L	13816080	3L_13816080_SNP [dm3] 3L_13822980_SNP [dm6]	G	A	1.623e^-5	0.095	INTERGENIC
3R	11305398	3R_11305398_SNP [dm3] 3R_15479676_SNP [dm6]	A	G	1.636e^-5	0.095	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16287780	3L_16287780_SNP [dm3] 3L_16294680_SNP [dm6]	G	T	1.637e^-5	0.095	DOWNSTREAM CG4962 INTERGENIC
2L	7149384	2L_7149384_SNP [dm3] 2L_7149384_SNP [dm6]	C	G	1.643e^-5	0.096	INTRON Pvf3	TF binding site BDTNP1_TFBS_da
3R	25655902	3R_25655902_SNP [dm3] 3R_29830180_SNP [dm6]	A	G	1.674e^-5	0.097	INTRON Atg16	TF binding site mE1_TFBS_Trl
3R	26058359	3R_26058359_SNP [dm3] 3R_30232637_SNP [dm6]	A	G	1.693e^-5	0.098	INTERGENIC
2R	10230186	2R_10230186_SNP [dm3] 2R_14342681_SNP [dm6]	G	A	1.716e^-5	0.099	INTRON Shroom	TF binding site mE1_TFBS_HSA
2R	19962406	2R_19962406_SNP [dm3] 2R_24074883_SNP [dm6]	T	C	1.721e^-5	0.099	UTR_5_PRIME Mlp60A UPSTREAM Mlp60A
3L	20647120	3L_20647120_INS [dm3] 3L_20654020_INS [dm6]	A	AA	1.746e^-5	0.1	EXON CR44685
X	11706052	X_11706052_SNP [dm3] X_11812019_SNP [dm6]	G	T	1.755e^-5	0.1	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9701579	2R_9701579_SNP [dm3] 2R_13814074_SNP [dm6]	C	T	1.785e^-5	0.101	SPLICE_SITE_REGION stj INTRON stj
3R	27236677	3R_27236677_DEL [dm3] 3R_31410955_DEL [dm6]	AGTATTCC	A	1.788e^-5	0.101	INTRON Gprk2
2R	7123219	2R_7123219_SNP [dm3] 2R_11235714_SNP [dm6]	C	T	1.806e^-5	0.102	UTR_3_PRIME CG13227 UPSTREAM CG34223 DOWNSTREAM CG13217	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14767456	3L_14767456_SNP [dm3] 3L_14774356_SNP [dm6]	T	C	1.843e^-5	0.103	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_chinmo
2R	14299067	2R_14299067_INS [dm3] 2R_18411562_INS [dm6]	T	CGGC	1.850e^-5	0.103	UTR_5_PRIME imd UPSTREAM Dp1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	14391512	3L_14391512_SNP [dm3] 3L_14398412_SNP [dm6]	G	C	1.871e^-5	0.103	INTERGENIC
2R	8636091	2R_8636091_INS [dm3] 2R_12748586_INS [dm6]	T	CCTTTG	1.872e^-5	0.103	INTRON CG42663
2R	8636137	2R_8636137_SNP [dm3] 2R_12748632_SNP [dm6]	T	G	1.872e^-5	0.103	INTRON CG42663
X	14752564	X_14752564_SNP [dm3] X_14858531_SNP [dm6]	G	A	1.875e^-5	0.103	INTRON Flo2
X	14752565	X_14752565_SNP [dm3] X_14858532_SNP [dm6]	A	C	1.875e^-5	0.103	INTRON Flo2
3R	26270021	3R_26270021_SNP [dm3] 3R_30444299_SNP [dm6]	C	T	1.881e^-5	0.103	UPSTREAM CG15537 INTRON Osi23
3R	26270025	3R_26270025_SNP [dm3] 3R_30444303_SNP [dm6]	T	G	1.881e^-5	0.103	UPSTREAM CG15537 INTRON Osi23
3R	26270026	3R_26270026_SNP [dm3] 3R_30444304_SNP [dm6]	G	A	1.881e^-5	0.103	UPSTREAM CG15537 INTRON Osi23
3R	26270031	3R_26270031_SNP [dm3] 3R_30444309_SNP [dm6]	T	G	1.881e^-5	0.103	UPSTREAM CG15537 INTRON Osi23
2R	15233852	2R_15233852_SNP [dm3] 2R_19346347_SNP [dm6]	A	T	1.881e^-5	0.103	DOWNSTREAM CG9975 INTRON Rgk1
X	10788687	X_10788687_SNP [dm3] X_10894654_SNP [dm6]	T	C	1.903e^-5	0.104	DOWNSTREAM CR44524 & 1 other INTERGENIC
X	17846006	X_17846006_SNP [dm3] X_17951973_SNP [dm6]	C	T	1.912e^-5	0.104	INTRON Sh
2R	4130467	2R_4130467_SNP [dm3] 2R_8242962_SNP [dm6]	A	G	1.940e^-5	0.104	UPSTREAM CR44276 EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16771747	3R_16771747_SNP [dm3] 3R_20946025_SNP [dm6]	T	C	1.941e^-5	0.104	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16771750	3R_16771750_SNP [dm3] 3R_20946028_SNP [dm6]	G	A	1.941e^-5	0.104	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16771752	3R_16771752_SNP [dm3] 3R_20946030_SNP [dm6]	G	C	1.941e^-5	0.104	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14767609	3L_14767609_SNP [dm3] 3L_14774509_SNP [dm6]	G	A	1.950e^-5	0.104	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13609304	3R_13609304_SNP [dm3] 3R_17783582_SNP [dm6]	G	A	1.959e^-5	0.104	SYNONYMOUS_CODING CG43102 UPSTREAM CG43102	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3182103	2R_3182103_SNP [dm3] 2R_7294598_SNP [dm6]	T	C	1.967e^-5	0.104	INTRON pwn
3L	16287771	3L_16287771_SNP [dm3] 3L_16294671_SNP [dm6]	C	A	1.970e^-5	0.104	DOWNSTREAM CG4962 INTERGENIC
2R	6740817	2R_6740817_SNP [dm3] 2R_10853312_SNP [dm6]	A	T	1.975e^-5	0.104	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20535806	X_20535806_SNP [dm3] X_20664779_SNP [dm6]	C	T	1.981e^-5	0.104	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23515341	3R_23515341_SNP [dm3] 3R_27689619_SNP [dm6]	C	G	2.002e^-5	0.105	INTRON CG12880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7506179	3R_7506179_SNP [dm3] 3R_11680457_SNP [dm6]	C	A	2.012e^-5	0.105	NON_SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7506197	3R_7506197_SNP [dm3] 3R_11680475_SNP [dm6]	C	T	2.012e^-5	0.105	SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18231273	2R_18231273_SNP [dm3] 2R_22343768_SNP [dm6]	T	A	2.075e^-5	0.107	INTRON Liprin-gamma
X	17870981	X_17870981_SNP [dm3] X_17976948_SNP [dm6]	A	T	2.079e^-5	0.107	INTRON Sh
X	17871057	X_17871057_SNP [dm3] X_17977024_SNP [dm6]	C	T	2.079e^-5	0.107	INTRON Sh
X	17871070	X_17871070_SNP [dm3] X_17977037_SNP [dm6]	A	G	2.079e^-5	0.107	INTRON Sh
2R	19138965	2R_19138965_SNP [dm3] 2R_23251442_SNP [dm6]	G	T	2.099e^-5	0.108	INTERGENIC
2L	12980123	2L_12980123_SNP [dm3] 2L_12980123_SNP [dm6]	A	G	2.129e^-5	0.109	SYNONYMOUS_CODING Vha68-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2403082	2L_2403082_SNP [dm3] 2L_2403082_SNP [dm6]	T	C	2.129e^-5	0.109	INTRON VGlut	TF binding site mE1_TFBS_HSA
2L	2403096	2L_2403096_SNP [dm3] 2L_2403096_SNP [dm6]	A	T	2.129e^-5	0.109	INTRON VGlut	TF binding site mE1_TFBS_HSA
2R	3230464	2R_3230464_SNP [dm3] 2R_7342959_SNP [dm6]	G	A	2.140e^-5	0.109	SPLICE_SITE_REGION Dscam1 UPSTREAM CR44071 INTRON Dscam1	TF binding site mE1_TFBS_chinmo
3L	14734085	3L_14734085_SNP [dm3] 3L_14740985_SNP [dm6]	G	T	2.145e^-5	0.109	INTRON ome
X	14316701	X_14316701_SNP [dm3] X_14422668_SNP [dm6]	A	G	2.153e^-5	0.109	INTRON dpr8	TF binding site mE1_TFBS_inv
X	10056851	X_10056851_SNP [dm3] X_10162818_SNP [dm6]	T	G	2.160e^-5	0.109	INTRON CR44894 & 1 other
3R	5059678	3R_5059678_SNP [dm3] 3R_9233956_SNP [dm6]	T	G	2.162e^-5	0.109	UTR_5_PRIME pum	TF binding site BDTNP1_TFBS_dl
3R	13052987	3R_13052987_SNP [dm3] 3R_17227265_SNP [dm6]	C	T	2.175e^-5	0.109	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7515446	3R_7515446_SNP [dm3] 3R_11689724_SNP [dm6]	A	C	2.177e^-5	0.109	SPLICE_SITE_DONOR CG6908 DOWNSTREAM CG18765 INTRON CG6908	TF binding site mE1_TFBS_cnc
3L	8625232	3L_8625232_SNP [dm3] 3L_8632132_SNP [dm6]	A	G	2.185e^-5	0.109	SYNONYMOUS_CODING Cdc6 INTRON Zasp66
2R	14440557	2R_14440557_SNP [dm3] 2R_18553052_SNP [dm6]	A	C	2.186e^-5	0.109	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8414997	2R_8414997_SNP [dm3] 2R_12527492_SNP [dm6]	T	C	2.188e^-5	0.109	INTERGENIC
2L	6811469	2L_6811469_SNP [dm3] 2L_6811469_SNP [dm6]	C	T	2.198e^-5	0.109	INTERGENIC
3R	27271258	3R_27271258_SNP [dm3] 3R_31445536_SNP [dm6]	G	T	2.199e^-5	0.109	INTRON Gprk2
3L	12028199	3L_12028199_SNP [dm3] 3L_12035099_SNP [dm6]	G	A	2.206e^-5	0.109	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	11691208	3R_11691208_SNP [dm3] 3R_15865486_SNP [dm6]	A	C	2.260e^-5	0.109	INTRON CG31183
3R	26071350	3R_26071350_SNP [dm3] 3R_30245628_SNP [dm6]	T	G	2.273e^-5	0.109	SYNONYMOUS_CODING CG9733
3L	18364022	3L_18364022_SNP [dm3] 3L_18370922_SNP [dm6]	G	T	2.282e^-5	0.109	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8889075	2L_8889075_SNP [dm3] 2L_8889075_SNP [dm6]	T	A	2.288e^-5	0.109	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	14242907	2R_14242907_SNP [dm3] 2R_18355402_SNP [dm6]	T	C	2.296e^-5	0.109	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14244378	2R_14244378_SNP [dm3] 2R_18356873_SNP [dm6]	G	A	2.296e^-5	0.109	START_GAINED sbb UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14261212	2R_14261212_SNP [dm3] 2R_18373707_SNP [dm6]	T	C	2.296e^-5	0.109	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12694516	3L_12694516_SNP [dm3] 3L_12701416_SNP [dm6]	G	A	2.296e^-5	0.109	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11101572	3R_11101572_SNP [dm3] 3R_15275850_SNP [dm6]	A	G	2.296e^-5	0.109	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11101752	3R_11101752_SNP [dm3] 3R_15276030_SNP [dm6]	C	A	2.296e^-5	0.109	NON_SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11102117	3R_11102117_SNP [dm3] 3R_15276395_SNP [dm6]	C	G	2.296e^-5	0.109	NON_SYNONYMOUS_CODING CG4338 DOWNSTREAM MRG15	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102352	3R_11102352_SNP [dm3] 3R_15276630_SNP [dm6]	G	A	2.296e^-5	0.109	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102400	3R_11102400_SNP [dm3] 3R_15276678_SNP [dm6]	A	G	2.296e^-5	0.109	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	2.296e^-5	0.109	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11107588	3R_11107588_SNP [dm3] 3R_15281866_SNP [dm6]	A	T	2.296e^-5	0.109	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11107603	3R_11107603_SNP [dm3] 3R_15281881_SNP [dm6]	T	C	2.296e^-5	0.109	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26283588	3R_26283588_DEL [dm3] 3R_30457866_DEL [dm6]	TTGCAT	T	2.304e^-5	0.109	INTRON CG2224
3R	26270040	3R_26270040_SNP [dm3] 3R_30444318_SNP [dm6]	T	G	2.305e^-5	0.109	UPSTREAM CG15537 INTRON Osi23
2L	5197853	2L_5197853_INS [dm3] 2L_5197853_INS [dm6]	C	CCATATCTCTC...	2.323e^-5	0.109	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3L	12569540	3L_12569540_SNP [dm3] 3L_12576440_SNP [dm6]	T	A	2.325e^-5	0.109	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	6236987	3L_6236987_SNP [dm3] 3L_6243887_SNP [dm6]	C	T	2.398e^-5	0.112	SYNONYMOUS_CODING Mdr65
X	19348126	X_19348126_SNP [dm3] X_19454093_SNP [dm6]	G	C	2.399e^-5	0.112	INTRON kek5
X	14779817	X_14779817_SNP [dm3] X_14885784_SNP [dm6]	C	A	2.407e^-5	0.112	DOWNSTREAM CG9514 INTRON Flo2
X	2191893	X_2191893_SNP [dm3] X_2297860_SNP [dm6]	A	G	2.408e^-5	0.112	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17981394	3R_17981394_SNP [dm3] 3R_22155672_SNP [dm6]	T	C	2.420e^-5	0.112	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7093619	3L_7093619_SNP [dm3] 3L_7100519_SNP [dm6]	C	A	2.445e^-5	0.113	INTRON form3
3L	19496184	3L_19496184_SNP [dm3] 3L_19503084_SNP [dm6]	A	C	2.457e^-5	0.113	INTRON CG9452
3L	19496185	3L_19496185_SNP [dm3] 3L_19503085_SNP [dm6]	C	T	2.457e^-5	0.113	INTRON CG9452
2R	4181210	2R_4181210_SNP [dm3] 2R_8293705_SNP [dm6]	A	C	2.458e^-5	0.113	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	14367109	3L_14367109_SNP [dm3] 3L_14374009_SNP [dm6]	C	A	2.478e^-5	0.113	INTERGENIC
2L	13066092	2L_13066092_SNP [dm3] 2L_13066092_SNP [dm6]	A	G	2.479e^-5	0.113	INTERGENIC
2R	15856765	2R_15856765_SNP [dm3] 2R_19969260_SNP [dm6]	C	T	2.484e^-5	0.113	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16712606	2R_16712606_INS [dm3] 2R_20825101_INS [dm6]	A	AA	2.487e^-5	0.113	INTRON insc	TF binding site mE1_TFBS_cad
3R	17609669	3R_17609669_SNP [dm3] 3R_21783947_SNP [dm6]	T	C	2.507e^-5	0.113	UTR_3_PRIME CASK EXON CRG
3L	4159630	3L_4159630_SNP [dm3] 3L_4159630_SNP [dm6]	C	G	2.515e^-5	0.113	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23723567	3R_23723567_SNP [dm3] 3R_27897845_SNP [dm6]	G	A	2.518e^-5	0.113	INTRON CG34353
3R	14252566	3R_14252566_INS [dm3] 3R_18426844_INS [dm6]	G	GTT	2.567e^-5	0.114	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14252570	3R_14252570_INS [dm3] 3R_18426848_INS [dm6]	C	CT	2.567e^-5	0.114	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23259219	3R_23259219_SNP [dm3] 3R_27433497_SNP [dm6]	A	T	2.567e^-5	0.114	INTRON side
3R	23259489	3R_23259489_SNP [dm3] 3R_27433767_SNP [dm6]	C	A	2.567e^-5	0.114	INTRON side
3R	23259866	3R_23259866_SNP [dm3] 3R_27434144_SNP [dm6]	C	T	2.567e^-5	0.114	INTRON side	TF binding site BDTNP1_TFBS_twi
2R	14267563	2R_14267563_SNP [dm3] 2R_18380058_SNP [dm6]	G	C	2.587e^-5	0.114	INTERGENIC
X	8244014	X_8244014_SNP [dm3] X_8349981_SNP [dm6]	C	T	2.588e^-5	0.114	INTRON nAChRalpha3
3R	26284802	3R_26284802_SNP [dm3] 3R_30459080_SNP [dm6]	G	A	2.595e^-5	0.114	UTR_5_PRIME CG2224 UPSTREAM CDase	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26284805	3R_26284805_SNP [dm3] 3R_30459083_SNP [dm6]	C	T	2.595e^-5	0.114	UTR_5_PRIME CG2224 UPSTREAM CDase	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14705561	3L_14705561_SNP [dm3] 3L_14712461_SNP [dm6]	G	A	2.597e^-5	0.114	INTRON ome
3L	14706344	3L_14706344_SNP [dm3] 3L_14713244_SNP [dm6]	G	C	2.597e^-5	0.114	INTRON ome
3R	13462971	3R_13462971_SNP [dm3] 3R_17637249_SNP [dm6]	T	G	2.610e^-5	0.114	INTRON CG43175
3R	13447403	3R_13447403_SNP [dm3] 3R_17621681_SNP [dm6]	G	A	2.633e^-5	0.115	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3R	27235868	3R_27235868_SNP [dm3] 3R_31410146_SNP [dm6]	A	G	2.652e^-5	0.115	INTRON Gprk2
3L	7094840	3L_7094840_SNP [dm3] 3L_7101740_SNP [dm6]	G	A	2.700e^-5	0.115	INTRON form3
3R	11107595	3R_11107595_SNP [dm3] 3R_15281873_SNP [dm6]	G	T	2.700e^-5	0.115	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5063868	3R_5063868_SNP [dm3] 3R_9238146_SNP [dm6]	G	A	2.706e^-5	0.115	UTR_3_PRIME D1 UPSTREAM pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3229343	2R_3229343_SNP [dm3] 2R_7341838_SNP [dm6]	C	G	2.709e^-5	0.115	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_HSA
3L	12569545	3L_12569545_SNP [dm3] 3L_12576445_SNP [dm6]	T	A	2.710e^-5	0.115	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
X	18603170	X_18603170_SNP [dm3] X_18709137_SNP [dm6]	A	C	2.717e^-5	0.115	UPSTREAM Cyp308a1 INTRON CCKLR-17D1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18608086	X_18608086_INS [dm3] X_18714053_INS [dm6]	T	TTTGTGTAAGTACAC...	2.717e^-5	0.115	INTRON CCKLR-17D1
X	21931828	X_21931828_SNP [dm3] X_22529992_SNP [dm6]	G	A	2.718e^-5	0.115	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	9912036	3R_9912036_SNP [dm3] 3R_14086314_SNP [dm6]	A	C	2.719e^-5	0.115	INTRON foxo
3R	11101725	3R_11101725_SNP [dm3] 3R_15276003_SNP [dm6]	G	T	2.719e^-5	0.115	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11107597	3R_11107597_SNP [dm3] 3R_15281875_SNP [dm6]	A	G	2.728e^-5	0.115	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11267594	3L_11267594_SNP [dm3] 3L_11274494_SNP [dm6]	T	C	2.729e^-5	0.115	EXON CR44720	TF binding site mE1_TFBS_HSA
3R	5257309	3R_5257309_SNP [dm3] 3R_9431587_SNP [dm6]	C	T	2.731e^-5	0.115	INTRON ps
2R	19502770	2R_19502770_SNP [dm3] 2R_23615247_SNP [dm6]	T	C	2.780e^-5	0.117	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
X	3793894	X_3793894_SNP [dm3] X_3899861_SNP [dm6]	G	C	2.846e^-5	0.12	INTRON CG42541
2R	8636120	2R_8636120_SNP [dm3] 2R_12748615_SNP [dm6]	C	G	2.886e^-5	0.121	INTRON CG42663
2R	6719880	2R_6719880_SNP [dm3] 2R_10832375_SNP [dm6]	A	T	2.896e^-5	0.121	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	14454378	2R_14454378_SNP [dm3] 2R_18566873_SNP [dm6]	G	A	2.916e^-5	0.121	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13066115	3R_13066115_SNP [dm3] 3R_17240393_SNP [dm6]	A	G	2.917e^-5	0.121	INTRON beat-IIb
3R	13066134	3R_13066134_SNP [dm3] 3R_17240412_SNP [dm6]	C	G	2.917e^-5	0.121	INTRON beat-IIb
2R	5944178	2R_5944178_SNP [dm3] 2R_10056673_SNP [dm6]	G	A	2.923e^-5	0.121	UPSTREAM magu INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5981821	2R_5981821_SNP [dm3] 2R_10094316_SNP [dm6]	T	A	2.938e^-5	0.122	NON_SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26284337	3R_26284337_SNP [dm3] 3R_30458615_SNP [dm6]	T	C	2.955e^-5	0.122	SYNONYMOUS_CODING CG2224 UPSTREAM CDase	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11217411	3R_11217411_SNP [dm3] 3R_15391689_SNP [dm6]	A	C	2.961e^-5	0.122	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp	TF binding site mE1_TFBS_cad
3R	13047171	3R_13047171_SNP [dm3] 3R_17221449_SNP [dm6]	G	A	2.970e^-5	0.122	INTRON CG31262
3R	13048226	3R_13048226_SNP [dm3] 3R_17222504_SNP [dm6]	G	T	2.970e^-5	0.122	INTRON CG31262
2R	4072850	2R_4072850_SNP [dm3] 2R_8185345_SNP [dm6]	T	A	2.989e^-5	0.122	INTRON LRP1
X	11707310	X_11707310_SNP [dm3] X_11813277_SNP [dm6]	T	C	2.995e^-5	0.122	INTRON CG1578	TF binding site mE1_TFBS_inv
X	5929622	X_5929622_SNP [dm3] X_6035589_SNP [dm6]	A	G	3.001e^-5	0.122	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12980114	2L_12980114_SNP [dm3] 2L_12980114_SNP [dm6]	C	T	3.007e^-5	0.122	SPLICE_SITE_REGION Vha68-3 SYNONYMOUS_CODING Vha68-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23259806	3R_23259806_SNP [dm3] 3R_27434084_SNP [dm6]	C	G	3.019e^-5	0.123	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	18230990	3R_18230990_SNP [dm3] 3R_22405268_SNP [dm6]	A	C	3.027e^-5	0.123	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
3L	14704427	3L_14704427_SNP [dm3] 3L_14711327_SNP [dm6]	C	T	3.039e^-5	0.123	INTRON ome
X	14529624	X_14529624_SNP [dm3] X_14635591_SNP [dm6]	G	A	3.061e^-5	0.124	INTRON NetA
3R	3739362	3R_3739362_SNP [dm3] 3R_7913640_SNP [dm6]	C	A	3.074e^-5	0.124	UPSTREAM CG2678 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14780391	X_14780391_DEL [dm3] X_14886358_DEL [dm6]	CC	A	3.077e^-5	0.124	UTR_3_PRIME CG9514 INTRON Flo2	TF binding site mE1_TFBS_chinmo
3L	10707071	3L_10707071_SNP [dm3] 3L_10713971_SNP [dm6]	T	A	3.085e^-5	0.124	INTERGENIC
3R	7512657	3R_7512657_SNP [dm3] 3R_11686935_SNP [dm6]	A	G	3.097e^-5	0.124	SYNONYMOUS_CODING CG6834
3R	7512806	3R_7512806_SNP [dm3] 3R_11687084_SNP [dm6]	A	C	3.097e^-5	0.124	NON_SYNONYMOUS_CODING CG6834
2R	3189060	2R_3189060_SNP [dm3] 2R_7301555_SNP [dm6]	A	C	3.113e^-5	0.124	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3229325	2R_3229325_SNP [dm3] 2R_7341820_SNP [dm6]	G	A	3.133e^-5	0.124	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_HSA
2R	8304874	2R_8304874_SNP [dm3] 2R_12417369_SNP [dm6]	C	G	3.137e^-5	0.124	NON_SYNONYMOUS_CODING CG13157	TF binding site mE1_TFBS_cad
3R	27195817	3R_27195817_SNP [dm3] 3R_31370095_SNP [dm6]	C	T	3.144e^-5	0.124	INTRON CG34347
X	8803658	X_8803658_SNP [dm3] X_8909625_SNP [dm6]	T	A	3.162e^-5	0.125	INTRON rdgA
X	15182498	X_15182498_SNP [dm3] X_15288465_SNP [dm6]	G	T	3.171e^-5	0.125	UPSTREAM CR44663 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12867684	3L_12867684_SNP [dm3] 3L_12874584_SNP [dm6]	C	T	3.183e^-5	0.125	INTERGENIC
3R	27334278	3R_27334278_SNP [dm3] 3R_31508556_SNP [dm6]	C	T	3.185e^-5	0.125	INTERGENIC
3R	5055062	3R_5055062_SNP [dm3] 3R_9229340_SNP [dm6]	T	A	3.196e^-5	0.125	INTRON pum & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	15903481	2L_15903481_SNP [dm3] 2L_15903481_SNP [dm6]	A	T	3.203e^-5	0.125	INTERGENIC
3R	11081054	3R_11081054_SNP [dm3] 3R_15255332_SNP [dm6]	G	T	3.206e^-5	0.125	NON_SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad
3R	11081235	3R_11081235_SNP [dm3] 3R_15255513_SNP [dm6]	T	A	3.206e^-5	0.125	INTRON CG42404	TF binding site mE1_TFBS_cad
3R	11081237	3R_11081237_INS [dm3] 3R_15255515_INS [dm6]	C	CTAGGGC	3.206e^-5	0.125	INTRON CG42404	TF binding site mE1_TFBS_cad
3R	13690028	3R_13690028_SNP [dm3] 3R_17864306_SNP [dm6]	G	A	3.260e^-5	0.126	INTRON tinc
3L	12964901	3L_12964901_SNP [dm3] 3L_12971801_SNP [dm6]	C	T	3.260e^-5	0.126	SYNONYMOUS_CODING CG10748 UPSTREAM CG10749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26669088	3R_26669088_SNP [dm3] 3R_30843366_SNP [dm6]	A	G	3.296e^-5	0.127	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15766011	3R_15766011_SNP [dm3] 3R_19940289_SNP [dm6]	C	T	3.298e^-5	0.127	INTRON Hs6st
2R	4564232	2R_4564232_DEL [dm3] 2R_8676727_DEL [dm6]	TGAAATACTT	T	3.319e^-5	0.127	UPSTREAM CG30354 INTRON Acsl
2R	20043400	2R_20043400_SNP [dm3] 2R_24155877_SNP [dm6]	C	G	3.323e^-5	0.127	NON_SYNONYMOUS_CODING Dat
3L	19495588	3L_19495588_SNP [dm3] 3L_19502488_SNP [dm6]	A	C	3.346e^-5	0.128	SPLICE_SITE_REGION CG9452 INTRON CG9452
3R	5062498	3R_5062498_SNP [dm3] 3R_9236776_SNP [dm6]	T	A	3.358e^-5	0.128	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	11706797	X_11706797_SNP [dm3] X_11812764_SNP [dm6]	C	T	3.367e^-5	0.128	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	10822565	X_10822565_SNP [dm3] X_10928532_SNP [dm6]	A	T	3.370e^-5	0.128	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26864473	3R_26864473_DEL [dm3] 3R_31038751_DEL [dm6]	AA	A	3.391e^-5	0.128	UPSTREAM CanA1 INTERGENIC
2R	15873538	2R_15873538_INS [dm3] 2R_19986033_INS [dm6]	A	AT	3.397e^-5	0.128	INTERGENIC
3L	14640527	3L_14640527_SNP [dm3] 3L_14647427_SNP [dm6]	A	G	3.399e^-5	0.128	INTRON dlp
2R	20046230	2R_20046230_SNP [dm3] 2R_24158707_SNP [dm6]	T	C	3.408e^-5	0.128	NON_SYNONYMOUS_CODING DnaJ-60 UTR_5_PRIME CG42568 UPSTREAM spag DOWNSTREAM Dat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	21977583	X_21977583_SNP [dm3] X_22575747_SNP [dm6]	G	A	3.413e^-5	0.128	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10193835	2L_10193835_SNP [dm3] 2L_10193835_SNP [dm6]	T	C	3.421e^-5	0.128	SYNONYMOUS_CODING Sur	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2R	15391962	2R_15391962_SNP [dm3] 2R_19504457_SNP [dm6]	A	T	3.422e^-5	0.128	UTR_3_PRIME CG11007 UPSTREAM CR44472 DOWNSTREAM CG11007
2R	13737363	2R_13737363_SNP [dm3] 2R_17849858_SNP [dm6]	A	C	3.442e^-5	0.129	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
X	21931691	X_21931691_SNP [dm3] X_22529855_SNP [dm6]	G	T	3.443e^-5	0.129	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13926849	3R_13926849_SNP [dm3] 3R_18101127_SNP [dm6]	G	A	3.456e^-5	0.129	INTRON sr
3R	5309213	3R_5309213_SNP [dm3] 3R_9483491_SNP [dm6]	T	A	3.463e^-5	0.129	INTRON CG16779 EXON CR45203
3R	18685882	3R_18685882_SNP [dm3] 3R_22860160_SNP [dm6]	C	T	3.470e^-5	0.129	INTERGENIC
3L	14758047	3L_14758047_SNP [dm3] 3L_14764947_SNP [dm6]	A	G	3.498e^-5	0.13	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11145681	3L_11145681_SNP [dm3] 3L_11152581_SNP [dm6]	T	G	3.529e^-5	0.13	INTRON CG32082
2R	4725971	2R_4725971_SNP [dm3] 2R_8838466_SNP [dm6]	T	A	3.533e^-5	0.13	INTRON sns	TF binding site mE1_TFBS_chinmo
3R	3751465	3R_3751465_DEL [dm3] 3R_7925743_DEL [dm6]	GAGGT	G	3.550e^-5	0.131	INTRON dsx
X	21457538	X_21457538_SNP [dm3] X_21586511_SNP [dm6]	C	G	3.550e^-5	0.131	INTERGENIC
2R	3238056	2R_3238056_SNP [dm3] 2R_7350551_SNP [dm6]	G	T	3.566e^-5	0.131	INTRON Dscam1	TF binding site mE1_TFBS_inv
2R	9088397	2R_9088397_SNP [dm3] 2R_13200892_SNP [dm6]	G	T	3.566e^-5	0.131	NON_SYNONYMOUS_CODING Aats-val INTRON Aats-val	TF binding site mE1_TFBS_cad
X	18602775	X_18602775_SNP [dm3] X_18708742_SNP [dm6]	A	C	3.579e^-5	0.131	SYNONYMOUS_CODING CCKLR-17D1
X	6797607	X_6797607_SNP [dm3] X_6903574_SNP [dm6]	C	T	3.583e^-5	0.131	INTERGENIC
X	8897274	X_8897274_SNP [dm3] X_9003241_SNP [dm6]	T	C	3.586e^-5	0.131	INTRON rdgA & 1 other
2R	7215869	2R_7215869_INS [dm3] 2R_11328364_INS [dm6]	T	TT	3.634e^-5	0.131	INTRON sha	TF binding site mE1_TFBS_sens
2R	9190081	2R_9190081_INS [dm3] 2R_13302576_INS [dm6]	T	TAAATT	3.639e^-5	0.131	INTERGENIC
X	7278991	X_7278991_SNP [dm3] X_7384958_SNP [dm6]	G	T	3.655e^-5	0.131	INTRON CG1677 & 1 other
2R	16714052	2R_16714052_SNP [dm3] 2R_20826547_SNP [dm6]	A	C	3.659e^-5	0.131	DOWNSTREAM sktl INTRON insc
2R	5087283	2R_5087283_SNP [dm3] 2R_9199778_SNP [dm6]	C	A	3.660e^-5	0.131	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087295	2R_5087295_SNP [dm3] 2R_9199790_SNP [dm6]	T	G	3.660e^-5	0.131	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087311	2R_5087311_SNP [dm3] 2R_9199806_SNP [dm6]	A	G	3.660e^-5	0.131	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087314	2R_5087314_SNP [dm3] 2R_9199809_SNP [dm6]	G	A	3.660e^-5	0.131	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3181913	2R_3181913_DEL [dm3] 2R_7294408_DEL [dm6]	GCCGAAGGG	G	3.672e^-5	0.131	INTRON pwn
2R	3181988	2R_3181988_SNP [dm3] 2R_7294483_SNP [dm6]	G	T	3.672e^-5	0.131	INTRON pwn
3L	7221445	3L_7221445_SNP [dm3] 3L_7228345_SNP [dm6]	G	T	3.683e^-5	0.131	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5846122	3L_5846122_SNP [dm3] 3L_5853022_SNP [dm6]	C	T	3.689e^-5	0.131	INTERGENIC
3L	14061240	3L_14061240_SNP [dm3] 3L_14068140_SNP [dm6]	T	G	3.694e^-5	0.131	INTRON CG32138
X	14793308	X_14793308_SNP [dm3] X_14899275_SNP [dm6]	G	T	3.706e^-5	0.131	INTRON Flo2
3L	2844134	3L_2844134_SNP [dm3] 3L_2844134_SNP [dm6]	A	G	3.722e^-5	0.132	INTRON CG43444
X	6095201	X_6095201_SNP [dm3] X_6201168_SNP [dm6]	C	G	3.750e^-5	0.132	SYNONYMOUS_CODING vanin-like
X	6095210	X_6095210_SNP [dm3] X_6201177_SNP [dm6]	C	T	3.750e^-5	0.132	SYNONYMOUS_CODING vanin-like
2R	4734505	2R_4734505_SNP [dm3] 2R_8847000_SNP [dm6]	C	T	3.808e^-5	0.133	INTRON sns	TF binding site mE1_TFBS_cad
2R	8297766	2R_8297766_SNP [dm3] 2R_12410261_SNP [dm6]	G	T	3.808e^-5	0.133	NON_SYNONYMOUS_CODING CG33626 UPSTREAM CG33627 DOWNSTREAM CG30050
X	18597563	X_18597563_SNP [dm3] X_18703530_SNP [dm6]	A	T	3.811e^-5	0.133	INTERGENIC
2R	19607038	2R_19607038_SNP [dm3] 2R_23719515_SNP [dm6]	C	T	3.816e^-5	0.133	NON_SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11834813	2R_11834813_SNP [dm3] 2R_15947308_SNP [dm6]	C	A	3.846e^-5	0.134	SYNONYMOUS_CODING Strn-Mlck UTR_3_PRIME Strn-Mlck DOWNSTREAM Cyp4aa1
X	14601920	X_14601920_SNP [dm3] X_14707887_SNP [dm6]	A	G	3.870e^-5	0.135	INTRON NetB
X	21978700	X_21978700_SNP [dm3] X_22576864_SNP [dm6]	C	T	3.928e^-5	0.137	INTERGENIC	transposable element FlyBase
3R	13447346	3R_13447346_SNP [dm3] 3R_17621624_SNP [dm6]	T	C	3.939e^-5	0.137	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	4161459	3L_4161459_SNP [dm3] 3L_4161459_SNP [dm6]	C	T	3.948e^-5	0.137	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	10349718	2L_10349718_SNP [dm3] 2L_10349718_SNP [dm6]	T	C	3.989e^-5	0.138	INTRON CG34367
X	8778493	X_8778493_SNP [dm3] X_8884460_SNP [dm6]	T	A	4.002e^-5	0.138	INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2394563	2L_2394563_SNP [dm3] 2L_2394563_SNP [dm6]	C	A	4.018e^-5	0.138	INTRON VGlut
3R	3471074	3R_3471074_SNP [dm3] 3R_7645352_SNP [dm6]	A	T	4.048e^-5	0.139	INTERGENIC
X	9818661	X_9818661_SNP [dm3] X_9924628_SNP [dm6]	A	G	4.050e^-5	0.139	INTERGENIC
X	9818678	X_9818678_SNP [dm3] X_9924645_SNP [dm6]	C	T	4.050e^-5	0.139	INTERGENIC
3R	7391728	3R_7391728_SNP [dm3] 3R_11566006_SNP [dm6]	G	A	4.057e^-5	0.139	INTRON fabp & 1 other	TF binding site mE1_TFBS_Trl
2R	9655038	2R_9655038_SNP [dm3] 2R_13767533_SNP [dm6]	C	T	4.064e^-5	0.139	INTERGENIC
3R	13054314	3R_13054314_SNP [dm3] 3R_17228592_SNP [dm6]	A	G	4.071e^-5	0.139	INTERGENIC
3R	26283831	3R_26283831_SNP [dm3] 3R_30458109_SNP [dm6]	G	A	4.087e^-5	0.139	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15903404	2L_15903404_SNP [dm3] 2L_15903404_SNP [dm6]	A	C	4.089e^-5	0.139	UPSTREAM CG31821 INTERGENIC
3L	14359129	3L_14359129_SNP [dm3] 3L_14366029_SNP [dm6]	T	A	4.104e^-5	0.139	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	8803433	X_8803433_SNP [dm3] X_8909400_SNP [dm6]	G	C	4.119e^-5	0.139	INTRON rdgA
2L	5197860	2L_5197860_SNP [dm3] 2L_5197860_SNP [dm6]	T	C	4.120e^-5	0.139	SPLICE_SITE_REGION Msp300 INTRON Msp300	TF binding site mE1_TFBS_chinmo
3R	25642635	3R_25642635_SNP [dm3] 3R_29816913_SNP [dm6]	G	T	4.140e^-5	0.139	UTR_3_PRIME CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11791366	3R_11791366_SNP [dm3] 3R_15965644_SNP [dm6]	G	A	4.152e^-5	0.139	SYNONYMOUS_CODING Rbf2 UPSTREAM CG32856 DOWNSTREAM CG5516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	27288647	3R_27288647_SNP [dm3] 3R_31462925_SNP [dm6]	G	A	4.158e^-5	0.139	START_GAINED CG11334 UTR_5_PRIME CG11334 UPSTREAM CG11334 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18597637	X_18597637_SNP [dm3] X_18703604_SNP [dm6]	C	T	4.160e^-5	0.139	INTERGENIC
X	6779358	X_6779358_SNP [dm3] X_6885325_SNP [dm6]	C	A	4.208e^-5	0.141	INTERGENIC
3R	4277831	3R_4277831_SNP [dm3] 3R_8452109_SNP [dm6]	G	T	4.219e^-5	0.141	INTRON CG45263	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4050722	2R_4050722_SNP [dm3] 2R_8163217_SNP [dm6]	C	T	4.222e^-5	0.141	SYNONYMOUS_CODING RagC-D UPSTREAM Rs1 DOWNSTREAM CG30373	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5017383	2R_5017383_SNP [dm3] 2R_9129878_SNP [dm6]	A	G	4.228e^-5	0.141	INTRON CG18659
3R	4297597	3R_4297597_SNP [dm3] 3R_8471875_SNP [dm6]	A	G	4.235e^-5	0.141	INTRON CG45263	TF binding site BDTNP1_TFBS_da
3L	21804067	3L_21804067_SNP [dm3] 3L_21810967_SNP [dm6]	A	C	4.245e^-5	0.141	INTRON eg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18922003	2R_18922003_SNP [dm3] 2R_23034480_SNP [dm6]	C	A	4.265e^-5	0.141	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19362512	X_19362512_SNP [dm3] X_19468479_SNP [dm6]	G	A	4.305e^-5	0.142	SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_chinmo
2R	15332974	2R_15332974_SNP [dm3] 2R_19445469_SNP [dm6]	A	C	4.340e^-5	0.143	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10628708	3R_10628708_SNP [dm3] 3R_14802986_SNP [dm6]	C	T	4.389e^-5	0.145	SYNONYMOUS_CODING CG14857
3R	27195885	3R_27195885_SNP [dm3] 3R_31370163_SNP [dm6]	C	T	4.406e^-5	0.145	INTRON CG34347
2R	15873535	2R_15873535_SNP [dm3] 2R_19986030_SNP [dm6]	C	A	4.441e^-5	0.145	INTERGENIC
3L	14769634	3L_14769634_INS [dm3] 3L_14776534_INS [dm6]	A	AT	4.445e^-5	0.145	UTR_3_PRIME bmm UPSTREAM mop	TF binding site BDTNP1_TFBS_dl
3L	15471888	3L_15471888_SNP [dm3] 3L_15478788_SNP [dm6]	T	C	4.449e^-5	0.145	INTERGENIC
X	16539631	X_16539631_SNP [dm3] X_16645598_SNP [dm6]	T	C	4.453e^-5	0.145	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15275505	2R_15275505_SNP [dm3] 2R_19388000_SNP [dm6]	T	G	4.474e^-5	0.146	SYNONYMOUS_CODING CG10081
2L	5649051	2L_5649051_SNP [dm3] 2L_5649051_SNP [dm6]	C	T	4.484e^-5	0.146	INTRON CG31646
2R	12330167	2R_12330167_SNP [dm3] 2R_16442662_SNP [dm6]	G	A	4.529e^-5	0.147	UPSTREAM CG4409 INTERGENIC
2R	19607039	2R_19607039_SNP [dm3] 2R_23719516_SNP [dm6]	C	T	4.534e^-5	0.147	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	21910669	X_21910669_SNP [dm3] X_22508833_SNP [dm6]	A	G	4.552e^-5	0.147	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14316823	X_14316823_SNP [dm3] X_14422790_SNP [dm6]	G	T	4.568e^-5	0.148	INTRON dpr8	TF binding site mE1_TFBS_inv
X	11753212	X_11753212_SNP [dm3] X_11859179_SNP [dm6]	G	A	4.588e^-5	0.148	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	14455085	2R_14455085_SNP [dm3] 2R_18567580_SNP [dm6]	A	G	4.611e^-5	0.148	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3R	11691124	3R_11691124_SNP [dm3] 3R_15865402_SNP [dm6]	C	T	4.612e^-5	0.148	INTRON CG31183
2R	8789239	2R_8789239_SNP [dm3] 2R_12901734_SNP [dm6]	A	T	4.621e^-5	0.148	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3179518	2R_3179518_SNP [dm3] 2R_7292013_SNP [dm6]	G	A	4.639e^-5	0.148	INTRON pwn	TF binding site mE1_TFBS_cad
X	5225293	X_5225293_SNP [dm3] X_5331260_SNP [dm6]	G	A	4.643e^-5	0.148	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_sens
X	6552426	X_6552426_SNP [dm3] X_6658393_SNP [dm6]	T	C	4.650e^-5	0.148	SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	3347122	X_3347122_SNP [dm3] X_3453089_SNP [dm6]	C	T	4.661e^-5	0.148	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13036248	3R_13036248_SNP [dm3] 3R_17210526_SNP [dm6]	A	G	4.673e^-5	0.149	INTERGENIC
X	18485213	X_18485213_SNP [dm3] X_18591180_SNP [dm6]	C	A	4.694e^-5	0.149	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18596091	X_18596091_SNP [dm3] X_18702058_SNP [dm6]	A	G	4.709e^-5	0.149	INTERGENIC
3L	5304173	3L_5304173_SNP [dm3] 3L_5311073_SNP [dm6]	G	A	4.729e^-5	0.15	INTERGENIC
3R	17104259	3R_17104259_SNP [dm3] 3R_21278537_SNP [dm6]	G	T	4.738e^-5	0.15	UTR_3_PRIME SIFaR
3L	13915147	3L_13915147_SNP [dm3] 3L_13922047_SNP [dm6]	C	A	4.797e^-5	0.151	UTR_5_PRIME Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	11968999	2R_11968999_INS [dm3] 2R_16081494_INS [dm6]	C	CG	4.822e^-5	0.152	UTR_3_PRIME Dg DOWNSTREAM Dg
3R	27131994	3R_27131994_SNP [dm3] 3R_31306272_SNP [dm6]	G	A	4.841e^-5	0.152	UPSTREAM CG11340 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6719771	2R_6719771_SNP [dm3] 2R_10832266_SNP [dm6]	G	A	4.857e^-5	0.152	INTRON CG12344	TF binding site mE1_TFBS_inv
X	9160437	X_9160437_SNP [dm3] X_9266404_SNP [dm6]	G	A	4.904e^-5	0.152	INTRON Erk7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27266321	3R_27266321_DEL [dm3] 3R_31440599_DEL [dm6]	GGTCTTTACACTTCATTGG...	G	4.906e^-5	0.152	INTRON Gprk2
2R	4747148	2R_4747148_SNP [dm3] 2R_8859643_SNP [dm6]	G	A	4.913e^-5	0.152	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23260955	3R_23260955_SNP [dm3] 3R_27435233_SNP [dm6]	T	C	4.913e^-5	0.152	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	23260958	3R_23260958_SNP [dm3] 3R_27435236_SNP [dm6]	G	A	4.913e^-5	0.152	INTRON side	TF binding site BDTNP1_TFBS_twi
X	18708124	X_18708124_SNP [dm3] X_18814091_SNP [dm6]	G	A	4.913e^-5	0.152	INTRON CG42450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18708219	X_18708219_SNP [dm3] X_18814186_SNP [dm6]	A	T	4.913e^-5	0.152	INTRON CG42450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12569641	3L_12569641_SNP [dm3] 3L_12576541_SNP [dm6]	C	T	4.932e^-5	0.153	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	9949647	2L_9949647_SNP [dm3] 2L_9949647_SNP [dm6]	A	G	4.945e^-5	0.153	DOWNSTREAM mir-87 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14086571	2L_14086571_SNP [dm3] 2L_14086571_SNP [dm6]	G	A	4.974e^-5	0.153	INTRON nAChRalpha5
2L	7150865	2L_7150865_DEL [dm3] 2L_7150865_DEL [dm6]	CCC	C	5.011e^-5	0.154	INTRON Pvf3
X	8803303	X_8803303_SNP [dm3] X_8909270_SNP [dm6]	A	T	5.013e^-5	0.154	INTRON rdgA
3R	27210004	3R_27210004_SNP [dm3] 3R_31384282_SNP [dm6]	G	A	5.013e^-5	0.154	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14337185	3L_14337185_SNP [dm3] 3L_14344085_SNP [dm6]	A	C	5.020e^-5	0.154	INTRON fz
2R	17226469	2R_17226469_SNP [dm3] 2R_21338964_SNP [dm6]	G	T	5.031e^-5	0.154	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	19607027	2R_19607027_SNP [dm3] 2R_23719504_SNP [dm6]	C	T	5.041e^-5	0.154	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15182173	2R_15182173_SNP [dm3] 2R_19294668_SNP [dm6]	T	C	5.043e^-5	0.154	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17845761	2R_17845761_SNP [dm3] 2R_21958256_SNP [dm6]	C	T	5.107e^-5	0.156	INTERGENIC
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	5.130e^-5	0.156	SYNONYMOUS_CODING CG14857
X	5225260	X_5225260_SNP [dm3] X_5331227_SNP [dm6]	G	A	5.137e^-5	0.156	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16066675	2L_16066675_SNP [dm3] 2L_16066675_SNP [dm6]	A	G	5.145e^-5	0.156	INTRON beat-Ia
3R	26283833	3R_26283833_SNP [dm3] 3R_30458111_SNP [dm6]	A	T	5.166e^-5	0.156	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25966419	3R_25966419_DEL [dm3] 3R_30140697_DEL [dm6]	CG	C	5.166e^-5	0.156	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14264426	2R_14264426_SNP [dm3] 2R_18376921_SNP [dm6]	G	A	5.189e^-5	0.156	UPSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14640421	3L_14640421_SNP [dm3] 3L_14647321_SNP [dm6]	G	T	5.201e^-5	0.157	INTRON dlp
3R	13067631	3R_13067631_SNP [dm3] 3R_17241909_SNP [dm6]	G	A	5.208e^-5	0.157	INTRON beat-IIb
3L	7385083	3L_7385083_INS [dm3] 3L_7391983_INS [dm6]	A	TTAT	5.216e^-5	0.157	INTRON CG8563
X	7278837	X_7278837_SNP [dm3] X_7384804_SNP [dm6]	C	T	5.233e^-5	0.157	INTRON CG1677 & 1 other
3L	9305828	3L_9305828_SNP [dm3] 3L_9312728_SNP [dm6]	G	A	5.236e^-5	0.157	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20234333	X_20234333_SNP [dm3] X_20363306_SNP [dm6]	C	A	5.291e^-5	0.158	INTERGENIC
X	11375861	X_11375861_SNP [dm3] X_11481828_SNP [dm6]	G	C	5.315e^-5	0.158	NON_SYNONYMOUS_CODING Cyp4g15	TF binding site mE1_TFBS_chinmo
2R	17997183	2R_17997183_SNP [dm3] 2R_22109678_SNP [dm6]	A	T	5.319e^-5	0.158	NON_SYNONYMOUS_CODING Vrp1	TF binding site mE1_TFBS_cad
X	18610303	X_18610303_SNP [dm3] X_18716270_SNP [dm6]	G	A	5.358e^-5	0.159	INTRON CCKLR-17D1
3L	15644130	3L_15644130_SNP [dm3] 3L_15651030_SNP [dm6]	C	T	5.415e^-5	0.161	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
2R	5634970	2R_5634970_SNP [dm3] 2R_9747465_SNP [dm6]	G	A	5.426e^-5	0.161	UTR_5_PRIME sqa
2R	3192174	2R_3192174_SNP [dm3] 2R_7304669_SNP [dm6]	G	A	5.447e^-5	0.161	INTERGENIC
3L	11229757	3L_11229757_SNP [dm3] 3L_11236657_SNP [dm6]	A	G	5.455e^-5	0.161	UPSTREAM Ir68a & 1 other EXON CR44718	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26894178	3R_26894178_SNP [dm3] 3R_31068456_SNP [dm6]	T	G	5.459e^-5	0.161	INTRON Sox100B
3R	21724804	3R_21724804_SNP [dm3] 3R_25899082_SNP [dm6]	G	A	5.509e^-5	0.161	SYNONYMOUS_CODING MCO3 UPSTREAM CG31091	TF binding site mE1_TFBS_sens
3R	1917898	3R_1917898_SNP [dm3] 3R_6092176_SNP [dm6]	G	T	5.516e^-5	0.161	DOWNSTREAM Gasp INTRON Gasp
2L	3130226	2L_3130226_SNP [dm3] 2L_3130226_SNP [dm6]	C	T	5.517e^-5	0.161	DOWNSTREAM CG15403 INTRON toc
2L	1246943	2L_1246943_SNP [dm3] 2L_1246943_SNP [dm6]	C	T	5.522e^-5	0.161	INTERGENIC
3R	25641347	3R_25641347_SNP [dm3] 3R_29815625_SNP [dm6]	C	G	5.528e^-5	0.161	NON_SYNONYMOUS_CODING Vps16B DOWNSTREAM ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22240695	3R_22240695_SNP [dm3] 3R_26414973_SNP [dm6]	T	C	5.529e^-5	0.161	INTRON CG5432
2R	16691793	2R_16691793_SNP [dm3] 2R_20804288_SNP [dm6]	G	C	5.549e^-5	0.162	INTERGENIC
3R	27208523	3R_27208523_SNP [dm3] 3R_31382801_SNP [dm6]	C	T	5.596e^-5	0.163	INTRON CG1607
3L	12865805	3L_12865805_SNP [dm3] 3L_12872705_SNP [dm6]	G	C	5.694e^-5	0.166	INTERGENIC
X	20465532	X_20465532_SNP [dm3] X_20594505_SNP [dm6]	G	A	5.715e^-5	0.166	INTRON RunxA
X	18195485	X_18195485_SNP [dm3] X_18301452_SNP [dm6]	G	C	5.750e^-5	0.166	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27209969	3R_27209969_SNP [dm3] 3R_31384247_SNP [dm6]	T	G	5.765e^-5	0.166	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27249400	3R_27249400_SNP [dm3] 3R_31423678_SNP [dm6]	C	T	5.772e^-5	0.166	INTRON Gprk2
2R	4946138	2R_4946138_SNP [dm3] 2R_9058633_SNP [dm6]	C	T	5.773e^-5	0.166	INTRON CG13743
X	18707330	X_18707330_SNP [dm3] X_18813297_SNP [dm6]	C	T	5.773e^-5	0.166	UTR_5_PRIME CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18707822	X_18707822_SNP [dm3] X_18813789_SNP [dm6]	A	G	5.773e^-5	0.166	UTR_5_PRIME CG42450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13823729	3L_13823729_SNP [dm3] 3L_13830629_SNP [dm6]	A	C	5.805e^-5	0.167	INTERGENIC
3R	27236630	3R_27236630_SNP [dm3] 3R_31410908_SNP [dm6]	T	A	5.842e^-5	0.167	INTRON Gprk2
3L	11221752	3L_11221752_SNP [dm3] 3L_11228652_SNP [dm6]	T	A	5.907e^-5	0.168	DOWNSTREAM CG42671 INTRON CG42671
3R	10169706	3R_10169706_SNP [dm3] 3R_14343984_SNP [dm6]	C	G	5.919e^-5	0.168	INTRON NK7.1
3R	15173947	3R_15173947_SNP [dm3] 3R_19348225_SNP [dm6]	C	T	5.920e^-5	0.168	INTERGENIC
X	18597424	X_18597424_SNP [dm3] X_18703391_SNP [dm6]	T	A	5.930e^-5	0.168	INTERGENIC
X	18597946	X_18597946_SNP [dm3] X_18703913_SNP [dm6]	A	T	5.930e^-5	0.168	INTERGENIC
2R	19546473	2R_19546473_SNP [dm3] 2R_23658950_SNP [dm6]	G	C	5.979e^-5	0.168	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546477	2R_19546477_SNP [dm3] 2R_23658954_SNP [dm6]	T	A	5.979e^-5	0.168	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546481	2R_19546481_SNP [dm3] 2R_23658958_SNP [dm6]	C	T	5.979e^-5	0.168	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9417941	2L_9417941_SNP [dm3] 2L_9417941_SNP [dm6]	A	G	5.982e^-5	0.168	INTRON Mco1
3R	13460622	3R_13460622_SNP [dm3] 3R_17634900_SNP [dm6]	G	A	5.995e^-5	0.168	INTRON CG43175
3L	7071019	3L_7071019_SNP [dm3] 3L_7077919_SNP [dm6]	G	A	6.013e^-5	0.168	UPSTREAM CG8641 INTERGENIC
3L	7073187	3L_7073187_SNP [dm3] 3L_7080087_SNP [dm6]	T	G	6.013e^-5	0.168	INTERGENIC
X	6960629	X_6960629_SNP [dm3] X_7066596_SNP [dm6]	A	T	6.027e^-5	0.168	UPSTREAM CG12541 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16959935	2R_16959935_SNP [dm3] 2R_21072430_SNP [dm6]	C	A	6.051e^-5	0.168	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	18392107	3L_18392107_SNP [dm3] 3L_18399007_SNP [dm6]	A	T	6.056e^-5	0.168	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	6863742	3R_6863742_DEL [dm3] 3R_11038020_DEL [dm6]	TGCC	T	6.059e^-5	0.168	INTRON CG34114
3L	4837872	3L_4837872_SNP [dm3] 3L_4837872_SNP [dm6]	A	T	6.067e^-5	0.168	UTR_3_PRIME CG13707
3L	16287575	3L_16287575_SNP [dm3] 3L_16294475_SNP [dm6]	A	T	6.072e^-5	0.168	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	6783577	3L_6783577_SNP [dm3] 3L_6790477_SNP [dm6]	T	C	6.073e^-5	0.168	UTR_5_PRIME vvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27236686	3R_27236686_SNP [dm3] 3R_31410964_SNP [dm6]	T	G	6.077e^-5	0.168	INTRON Gprk2
3R	26387276	3R_26387276_SNP [dm3] 3R_30561554_SNP [dm6]	T	A	6.077e^-5	0.168	INTRON tmod
3L	11633506	3L_11633506_SNP [dm3] 3L_11640406_SNP [dm6]	A	G	6.081e^-5	0.168	INTRON CG32091
2R	11965725	2R_11965725_SNP [dm3] 2R_16078220_SNP [dm6]	G	A	6.087e^-5	0.168	EXON CR43415
2R	11965726	2R_11965726_SNP [dm3] 2R_16078221_SNP [dm6]	A	T	6.087e^-5	0.168	EXON CR43415
2R	11965730	2R_11965730_SNP [dm3] 2R_16078225_SNP [dm6]	T	G	6.087e^-5	0.168	EXON CR43415
2R	11965751	2R_11965751_SNP [dm3] 2R_16078246_SNP [dm6]	C	T	6.087e^-5	0.168	EXON CR43415
3R	13439656	3R_13439656_SNP [dm3] 3R_17613934_SNP [dm6]	T	A	6.146e^-5	0.169	UTR_5_PRIME CG14327 DOWNSTREAM CG34281
X	17081368	X_17081368_SNP [dm3] X_17187335_SNP [dm6]	T	A	6.169e^-5	0.17	INTRON baz
2R	11772652	2R_11772652_SNP [dm3] 2R_15885147_SNP [dm6]	C	T	6.195e^-5	0.17	INTRON sli
3R	27205691	3R_27205691_SNP [dm3] 3R_31379969_SNP [dm6]	G	C	6.218e^-5	0.17	INTERGENIC
3R	26894206	3R_26894206_SNP [dm3] 3R_31068484_SNP [dm6]	A	T	6.244e^-5	0.171	INTRON Sox100B
X	17596881	X_17596881_SNP [dm3] X_17702848_SNP [dm6]	T	C	6.258e^-5	0.171	UTR_5_PRIME CG8188 UPSTREAM par-6 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	9721237	3R_9721237_SNP [dm3] 3R_13895515_SNP [dm6]	T	A	6.262e^-5	0.171	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14272635	2R_14272635_SNP [dm3] 2R_18385130_SNP [dm6]	G	A	6.264e^-5	0.171	SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13045021	3R_13045021_SNP [dm3] 3R_17219299_SNP [dm6]	T	G	6.333e^-5	0.172	INTRON CG31262
3R	26482702	3R_26482702_SNP [dm3] 3R_30656980_SNP [dm6]	A	C	6.350e^-5	0.172	INTERGENIC
3L	15645593	3L_15645593_SNP [dm3] 3L_15652493_SNP [dm6]	C	G	6.350e^-5	0.172	UPSTREAM Eig71Ed & 1 other INTERGENIC
3L	15472093	3L_15472093_SNP [dm3] 3L_15478993_SNP [dm6]	A	G	6.354e^-5	0.172	INTERGENIC
2L	6692319	2L_6692319_SNP [dm3] 2L_6692319_SNP [dm6]	A	G	6.358e^-5	0.172	INTRON Tsp
3L	6854449	3L_6854449_DEL [dm3] 3L_6861349_DEL [dm6]	TG	T	6.362e^-5	0.172	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15916051	2R_15916051_SNP [dm3] 2R_20028546_SNP [dm6]	C	G	6.407e^-5	0.172	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	7234690	2L_7234690_SNP [dm3] 2L_7234690_SNP [dm6]	C	T	6.414e^-5	0.172	SYNONYMOUS_CODING Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23879302	3R_23879302_SNP [dm3] 3R_28053580_SNP [dm6]	A	G	6.416e^-5	0.172	INTRON CG34362
2L	8194117	2L_8194117_SNP [dm3] 2L_8194117_SNP [dm6]	T	A	6.433e^-5	0.173	UTR_3_PRIME CG8475 UPSTREAM CR44116 INTRON CG8475
3L	9305562	3L_9305562_SNP [dm3] 3L_9312462_SNP [dm6]	A	G	6.437e^-5	0.173	INTERGENIC
X	14819045	X_14819045_SNP [dm3] X_14925012_SNP [dm6]	G	T	6.488e^-5	0.174	UPSTREAM Flo2 INTRON Flo2
2R	9117284	2R_9117284_SNP [dm3] 2R_13229779_SNP [dm6]	C	T	6.497e^-5	0.174	SYNONYMOUS_CODING Pex13 UPSTREAM fsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25316673	3R_25316673_SNP [dm3] 3R_29490951_SNP [dm6]	G	A	6.580e^-5	0.176	SYNONYMOUS_CODING Spase12 UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10507503	2R_10507503_SNP [dm3] 2R_14619998_SNP [dm6]	G	A	6.599e^-5	0.176	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14774610	X_14774610_SNP [dm3] X_14880577_SNP [dm6]	C	T	6.612e^-5	0.176	INTRON Flo2 & 2 others
3L	14654339	3L_14654339_SNP [dm3] 3L_14661239_SNP [dm6]	G	A	6.675e^-5	0.177	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16066555	2L_16066555_SNP [dm3] 2L_16066555_SNP [dm6]	T	C	6.679e^-5	0.177	INTRON beat-Ia
2R	8937283	2R_8937283_SNP [dm3] 2R_13049778_SNP [dm6]	T	G	6.680e^-5	0.177	UPSTREAM CG13324 INTERGENIC
3L	5693934	3L_5693934_SNP [dm3] 3L_5700834_SNP [dm6]	T	A	6.681e^-5	0.177	INTRON sif
2R	8189493	2R_8189493_SNP [dm3] 2R_12301988_SNP [dm6]	A	C	6.701e^-5	0.177	DOWNSTREAM SIP2 INTRON CG8850
3L	19404822	3L_19404822_SNP [dm3] 3L_19411722_SNP [dm6]	G	A	6.720e^-5	0.177	INTRON CG32206
2L	16066590	2L_16066590_SNP [dm3] 2L_16066590_SNP [dm6]	A	T	6.755e^-5	0.178	INTRON beat-Ia
3R	4294856	3R_4294856_SNP [dm3] 3R_8469134_SNP [dm6]	A	G	6.758e^-5	0.178	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15647088	3L_15647088_SNP [dm3] 3L_15653988_SNP [dm6]	G	A	6.772e^-5	0.178	DOWNSTREAM Eig71Ed & 1 other INTERGENIC
3L	15647762	3L_15647762_SNP [dm3] 3L_15654662_SNP [dm6]	C	A	6.772e^-5	0.178	SYNONYMOUS_CODING Eig71Ee
3R	3486667	3R_3486667_SNP [dm3] 3R_7660945_SNP [dm6]	A	C	6.793e^-5	0.178	INTRON Nlg1
3R	12550953	3R_12550953_SNP [dm3] 3R_16725231_SNP [dm6]	G	A	6.803e^-5	0.178	INTRON Ubx
3R	6818774	3R_6818774_SNP [dm3] 3R_10993052_SNP [dm6]	C	A	6.803e^-5	0.178	UTR_5_PRIME CG34114
2R	16022615	2R_16022615_SNP [dm3] 2R_20135110_SNP [dm6]	G	T	6.823e^-5	0.178	INTERGENIC
3R	5265124	3R_5265124_SNP [dm3] 3R_9439402_SNP [dm6]	C	A	6.871e^-5	0.179	UTR_5_PRIME ps INTRON ps
2L	6588849	2L_6588849_SNP [dm3] 2L_6588849_SNP [dm6]	G	A	6.930e^-5	0.18	INTRON CG11319
3L	8243241	3L_8243241_SNP [dm3] 3L_8250141_SNP [dm6]	A	G	6.975e^-5	0.181	INTRON Dscam4
3R	13053662	3R_13053662_SNP [dm3] 3R_17227940_SNP [dm6]	A	C	7.023e^-5	0.182	INTERGENIC
2L	16066626	2L_16066626_SNP [dm3] 2L_16066626_SNP [dm6]	A	T	7.047e^-5	0.183	INTRON beat-Ia
3R	27212913	3R_27212913_SNP [dm3] 3R_31387191_SNP [dm6]	G	A	7.072e^-5	0.183	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	3183155	3R_3183155_SNP [dm3] 3R_7357433_SNP [dm6]	G	A	7.080e^-5	0.183	INTERGENIC
2R	16692611	2R_16692611_SNP [dm3] 2R_20805106_SNP [dm6]	C	A	7.081e^-5	0.183	INTERGENIC
X	2144316	X_2144316_SNP [dm3] X_2250283_SNP [dm6]	A	G	7.104e^-5	0.183	UTR_3_PRIME CG3191 UPSTREAM crn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2144319	X_2144319_SNP [dm3] X_2250286_SNP [dm6]	G	A	7.104e^-5	0.183	UTR_3_PRIME CG3191 UPSTREAM crn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2144872	X_2144872_SNP [dm3] X_2250839_SNP [dm6]	T	G	7.104e^-5	0.183	SYNONYMOUS_CODING CG3191 UPSTREAM crn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6236877	3L_6236877_SNP [dm3] 3L_6243777_SNP [dm6]	T	C	7.132e^-5	0.183	SYNONYMOUS_CODING Mdr65
3R	27130903	3R_27130903_SNP [dm3] 3R_31305181_SNP [dm6]	A	C	7.177e^-5	0.184	UTR_5_PRIME CG11340
2R	14272657	2R_14272657_SNP [dm3] 2R_18385152_SNP [dm6]	C	T	7.194e^-5	0.184	NON_SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6194008	3L_6194008_SNP [dm3] 3L_6200908_SNP [dm6]	T	C	7.215e^-5	0.184	SYNONYMOUS_CODING CG8219 DOWNSTREAM Trn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6194185	3L_6194185_SNP [dm3] 3L_6201085_SNP [dm6]	G	A	7.215e^-5	0.184	SYNONYMOUS_CODING CG8219 DOWNSTREAM Trn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21448133	X_21448133_SNP [dm3] X_21577106_SNP [dm6]	A	T	7.227e^-5	0.184	INTERGENIC
X	19738940	X_19738940_SNP [dm3] X_19844907_SNP [dm6]	T	A	7.227e^-5	0.184	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1344726	2L_1344726_SNP [dm3] 2L_1344726_SNP [dm6]	C	T	7.258e^-5	0.184	SYNONYMOUS_CODING Cdlc2 UPSTREAM CG33922 DOWNSTREAM CR45005
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	7.259e^-5	0.184	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3194041	2R_3194041_SNP [dm3] 2R_7306536_SNP [dm6]	T	G	7.280e^-5	0.185	INTERGENIC
X	19673107	X_19673107_SNP [dm3] X_19779074_SNP [dm6]	C	A	7.325e^-5	0.185	NON_SYNONYMOUS_CODING vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14819043	X_14819043_SNP [dm3] X_14925010_SNP [dm6]	C	T	7.364e^-5	0.186	UPSTREAM Flo2 INTRON Flo2
2R	9022799	2R_9022799_SNP [dm3] 2R_13135294_SNP [dm6]	A	C	7.385e^-5	0.186	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2R	14455081	2R_14455081_SNP [dm3] 2R_18567576_SNP [dm6]	A	G	7.411e^-5	0.186	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3R	4278377	3R_4278377_SNP [dm3] 3R_8452655_SNP [dm6]	T	G	7.413e^-5	0.186	INTRON CG45263
3R	4278378	3R_4278378_SNP [dm3] 3R_8452656_SNP [dm6]	G	T	7.413e^-5	0.186	INTRON CG45263
3R	27209845	3R_27209845_SNP [dm3] 3R_31384123_SNP [dm6]	A	G	7.430e^-5	0.186	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
X	993929	X_993929_SNP [dm3] X_1099896_SNP [dm6]	T	C	7.436e^-5	0.186	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18995912	X_18995912_INS [dm3] X_19101879_INS [dm6]	T	TT	7.463e^-5	0.187	INTERGENIC
2R	9524078	2R_9524078_SNP [dm3] 2R_13636573_SNP [dm6]	A	C	7.469e^-5	0.187	INTRON fas
3L	16080932	3L_16080932_SNP [dm3] 3L_16087832_SNP [dm6]	T	C	7.512e^-5	0.187	UTR_3_PRIME CG5235 UPSTREAM Taspase1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5650171	2R_5650171_SNP [dm3] 2R_9762666_SNP [dm6]	T	C	7.523e^-5	0.187	INTRON trpl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	17871268	X_17871268_INS [dm3] X_17977235_INS [dm6]	G	GG	7.530e^-5	0.187	INTRON Sh
3R	27331561	3R_27331561_SNP [dm3] 3R_31505839_SNP [dm6]	C	T	7.547e^-5	0.187	SYNONYMOUS_CODING mey	TF binding site BDTNP1_TFBS_prd
2R	8717833	2R_8717833_DEL [dm3] 2R_12830328_DEL [dm6]	GGGATG	G	7.560e^-5	0.187	INTERGENIC
3R	27244147	3R_27244147_INS [dm3] 3R_31418425_INS [dm6]	A	ATCGA	7.562e^-5	0.187	INTRON Gprk2
3R	12170891	3R_12170891_SNP [dm3] 3R_16345169_SNP [dm6]	G	A	7.567e^-5	0.187	DOWNSTREAM CG14879 INTRON pad
3R	12170893	3R_12170893_SNP [dm3] 3R_16345171_SNP [dm6]	C	A	7.567e^-5	0.187	DOWNSTREAM CG14879 INTRON pad
X	16567600	X_16567600_SNP [dm3] X_16673567_SNP [dm6]	A	C	7.585e^-5	0.187	UPSTREAM CG13012 INTRON CG13012
2R	19511064	2R_19511064_SNP [dm3] 2R_23623541_SNP [dm6]	C	T	7.590e^-5	0.187	INTERGENIC
3R	19997251	3R_19997251_SNP [dm3] 3R_24171529_SNP [dm6]	T	C	7.594e^-5	0.187	INTERGENIC
3R	7735314	3R_7735314_SNP [dm3] 3R_11909592_SNP [dm6]	A	G	7.622e^-5	0.188	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26759938	3R_26759938_SNP [dm3] 3R_30934216_SNP [dm6]	T	A	7.670e^-5	0.188	INTERGENIC
2R	17740265	2R_17740265_SNP [dm3] 2R_21852760_SNP [dm6]	G	A	7.674e^-5	0.188	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27277023	3R_27277023_SNP [dm3] 3R_31451301_SNP [dm6]	G	T	7.704e^-5	0.189	INTRON Gprk2
3R	5062177	3R_5062177_SNP [dm3] 3R_9236455_SNP [dm6]	A	G	7.712e^-5	0.189	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9040760	3L_9040760_SNP [dm3] 3L_9047660_SNP [dm6]	G	A	7.757e^-5	0.19	SYNONYMOUS_CODING CG5144	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
X	17081713	X_17081713_SNP [dm3] X_17187680_SNP [dm6]	C	T	7.763e^-5	0.19	INTRON baz
2R	18243404	2R_18243404_SNP [dm3] 2R_22355899_SNP [dm6]	A	C	7.826e^-5	0.191	INTRON Liprin-gamma
X	18946524	X_18946524_SNP [dm3] X_19052491_SNP [dm6]	G	C	7.831e^-5	0.191	UTR_3_PRIME Diedel3
2R	16693658	2R_16693658_INS [dm3] 2R_20806153_INS [dm6]	A	ACATA	7.834e^-5	0.191	INTERGENIC
2L	14208777	2L_14208777_SNP [dm3] 2L_14208777_SNP [dm6]	G	T	7.870e^-5	0.191	INTRON Dyrk2
2R	14455484	2R_14455484_SNP [dm3] 2R_18567979_SNP [dm6]	C	G	7.873e^-5	0.191	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	3931197	X_3931197_SNP [dm3] X_4037164_SNP [dm6]	A	T	7.898e^-5	0.191	INTERGENIC
2R	9658051	2R_9658051_DEL [dm3] 2R_13770546_DEL [dm6]	TTC	T	7.902e^-5	0.191	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA
3R	5054988	3R_5054988_SNP [dm3] 3R_9229266_SNP [dm6]	A	C	7.958e^-5	0.192	INTRON pum & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	14303875	3R_14303875_SNP [dm3] 3R_18478153_SNP [dm6]	G	A	7.960e^-5	0.192	START_GAINED fru UTR_5_PRIME fru INTRON fru
3L	14071822	3L_14071822_SNP [dm3] 3L_14078722_SNP [dm6]	T	A	7.982e^-5	0.192	INTRON btl	regulatory region REDfly_CRMs
2R	9699338	2R_9699338_SNP [dm3] 2R_13811833_SNP [dm6]	T	C	7.983e^-5	0.192	INTRON stj
2L	16053453	2L_16053453_SNP [dm3] 2L_16053453_SNP [dm6]	A	C	7.997e^-5	0.192	INTRON beat-Ia
3R	6219289	3R_6219289_SNP [dm3] 3R_10393567_SNP [dm6]	A	G	8.009e^-5	0.192	INTRON cwo
2R	8636201	2R_8636201_SNP [dm3] 2R_12748696_SNP [dm6]	C	A	8.017e^-5	0.192	INTRON CG42663
3R	16114915	3R_16114915_SNP [dm3] 3R_20289193_SNP [dm6]	C	T	8.041e^-5	0.193	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	15647080	3L_15647080_SNP [dm3] 3L_15653980_SNP [dm6]	A	G	8.056e^-5	0.193	DOWNSTREAM Eig71Ed & 1 other INTERGENIC
2R	15397344	2R_15397344_SNP [dm3] 2R_19509839_SNP [dm6]	T	A	8.094e^-5	0.193	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3R	27288835	3R_27288835_SNP [dm3] 3R_31463113_SNP [dm6]	A	G	8.147e^-5	0.194	UPSTREAM CG11334 & 1 other INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	27288871	3R_27288871_DEL [dm3] 3R_31463149_DEL [dm6]	AC	A	8.147e^-5	0.194	UPSTREAM CG11334 & 1 other INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	27288904	3R_27288904_SNP [dm3] 3R_31463182_SNP [dm6]	T	A	8.147e^-5	0.194	UPSTREAM CG11333 & 1 other INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	15250006	3R_15250006_SNP [dm3] 3R_19424284_SNP [dm6]	G	A	8.164e^-5	0.194	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
2R	11772472	2R_11772472_SNP [dm3] 2R_15884967_SNP [dm6]	T	C	8.176e^-5	0.194	INTRON sli
3L	422289	3L_422289_SNP [dm3] 3L_422289_SNP [dm6]	C	T	8.198e^-5	0.194	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	993078	X_993078_SNP [dm3] X_1099045_SNP [dm6]	C	T	8.207e^-5	0.194	INTRON CG3655
3R	21505042	3R_21505042_SNP [dm3] 3R_25679320_SNP [dm6]	C	T	8.221e^-5	0.194	UTR_3_PRIME CG5039 & 1 other UPSTREAM CG4730	TF binding site mE1_TFBS_sens
X	12096236	X_12096236_SNP [dm3] X_12202203_SNP [dm6]	G	T	8.242e^-5	0.194	INTRON Ten-a	enhancer mE1_CBP_Enhancers
2R	14298997	2R_14298997_SNP [dm3] 2R_18411492_SNP [dm6]	T	A	8.248e^-5	0.194	UTR_5_PRIME imd UPSTREAM Dp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	23776974	3R_23776974_SNP [dm3] 3R_27951252_SNP [dm6]	G	A	8.273e^-5	0.194	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11082761	3R_11082761_SNP [dm3] 3R_15257039_SNP [dm6]	G	C	8.275e^-5	0.194	UTR_3_PRIME CG42404 DOWNSTREAM eIF-2gamma
3R	11088013	3R_11088013_SNP [dm3] 3R_15262291_SNP [dm6]	C	T	8.275e^-5	0.194	INTRON eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11093466	3R_11093466_SNP [dm3] 3R_15267744_SNP [dm6]	G	A	8.275e^-5	0.194	NON_SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25329581	3R_25329581_SNP [dm3] 3R_29503859_SNP [dm6]	T	C	8.351e^-5	0.195	UPSTREAM Trc8 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	8376784	X_8376784_SNP [dm3] X_8482751_SNP [dm6]	C	T	8.352e^-5	0.195	SYNONYMOUS_CODING Cp38 INTRON CG33223	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27316258	3R_27316258_SNP [dm3] 3R_31490536_SNP [dm6]	T	A	8.373e^-5	0.196	UPSTREAM CR45572 INTERGENIC
2R	15329509	2R_15329509_INS [dm3] 2R_19442004_INS [dm6]	C	CC	8.410e^-5	0.196	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	22198548	3R_22198548_SNP [dm3] 3R_26372826_SNP [dm6]	G	A	8.416e^-5	0.196	INTERGENIC
2R	13740637	2R_13740637_SNP [dm3] 2R_17853132_SNP [dm6]	A	G	8.435e^-5	0.196	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1687380	3R_1687380_SNP [dm3] 3R_5861658_SNP [dm6]	C	A	8.457e^-5	0.196	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5974113	3L_5974113_SNP [dm3] 3L_5981013_SNP [dm6]	G	A	8.464e^-5	0.196	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	4502891	2R_4502891_SNP [dm3] 2R_8615386_SNP [dm6]	A	T	8.483e^-5	0.196	UPSTREAM Cirl INTRON Cirl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7507094	3R_7507094_SNP [dm3] 3R_11681372_SNP [dm6]	G	A	8.511e^-5	0.196	SYNONYMOUS_CODING CG6830 DOWNSTREAM Ho	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4283877	3R_4283877_SNP [dm3] 3R_8458155_SNP [dm6]	T	A	8.516e^-5	0.196	INTRON CG45263
2R	15830064	2R_15830064_SNP [dm3] 2R_19942559_SNP [dm6]	G	C	8.519e^-5	0.196	INTERGENIC
X	993930	X_993930_SNP [dm3] X_1099897_SNP [dm6]	T	C	8.521e^-5	0.196	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11965667	2R_11965667_SNP [dm3] 2R_16078162_SNP [dm6]	A	C	8.539e^-5	0.196	DOWNSTREAM CR43415 INTERGENIC
2R	11965674	2R_11965674_SNP [dm3] 2R_16078169_SNP [dm6]	G	T	8.539e^-5	0.196	DOWNSTREAM CR43415 INTERGENIC
2R	11965710	2R_11965710_SNP [dm3] 2R_16078205_SNP [dm6]	T	A	8.539e^-5	0.196	EXON CR43415
2R	11965731	2R_11965731_INS [dm3] 2R_16078226_INS [dm6]	C	CT	8.539e^-5	0.196	EXON CR43415
2R	11965738	2R_11965738_INS [dm3] 2R_16078233_INS [dm6]	A	ATAAG	8.539e^-5	0.196	EXON CR43415
2R	16597235	2R_16597235_SNP [dm3] 2R_20709730_SNP [dm6]	C	T	8.550e^-5	0.196	INTRON dpr
X	18187319	X_18187319_SNP [dm3] X_18293286_SNP [dm6]	T	A	8.586e^-5	0.196	DOWNSTREAM CR15061 INTERGENIC
X	2144333	X_2144333_SNP [dm3] X_2250300_SNP [dm6]	A	C	8.617e^-5	0.197	UTR_3_PRIME CG3191 UPSTREAM crn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2144905	X_2144905_SNP [dm3] X_2250872_SNP [dm6]	T	G	8.617e^-5	0.197	NON_SYNONYMOUS_CODING CG3191 UPSTREAM crn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	27215580	3R_27215580_SNP [dm3] 3R_31389858_SNP [dm6]	T	C	8.624e^-5	0.197	SYNONYMOUS_CODING CG1607	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18230778	3R_18230778_SNP [dm3] 3R_22405056_SNP [dm6]	C	A	8.632e^-5	0.197	UTR_3_PRIME CG13856 UPSTREAM CG13855
2L	14543767	2L_14543767_SNP [dm3] 2L_14543767_SNP [dm6]	T	C	8.683e^-5	0.197	INTERGENIC
2L	14543768	2L_14543768_SNP [dm3] 2L_14543768_SNP [dm6]	T	C	8.683e^-5	0.197	INTERGENIC
X	2142883	X_2142883_SNP [dm3] X_2248850_SNP [dm6]	G	C	8.691e^-5	0.197	NON_SYNONYMOUS_CODING crn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5966890	2R_5966890_SNP [dm3] 2R_10079385_SNP [dm6]	A	T	8.692e^-5	0.197	INTRON egr	TF binding site BDTNP1_TFBS_dl
X	11096273	X_11096273_SNP [dm3] X_11202240_SNP [dm6]	A	G	8.822e^-5	0.199	UPSTREAM CG11106 INTERGENIC
2L	16722652	2L_16722652_SNP [dm3] 2L_16722652_SNP [dm6]	G	T	8.831e^-5	0.199	DOWNSTREAM VhaSFD & 1 other INTERGENIC
3R	27315190	3R_27315190_SNP [dm3] 3R_31489468_SNP [dm6]	G	A	8.837e^-5	0.199	INTERGENIC
3R	13424507	3R_13424507_SNP [dm3] 3R_17598785_SNP [dm6]	G	A	8.845e^-5	0.199	INTERGENIC
3L	6209270	3L_6209270_SNP [dm3] 3L_6216170_SNP [dm6]	C	A	8.910e^-5	0.2	INTRON LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6209536	3L_6209536_SNP [dm3] 3L_6216436_SNP [dm6]	C	T	8.910e^-5	0.2	INTRON LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3189119	2R_3189119_SNP [dm3] 2R_7301614_SNP [dm6]	T	G	8.949e^-5	0.201	DOWNSTREAM pwn INTERGENIC
2R	9378639	2R_9378639_SNP [dm3] 2R_13491134_SNP [dm6]	G	T	8.961e^-5	0.201	INTRON bbc
2R	9379489	2R_9379489_SNP [dm3] 2R_13491984_SNP [dm6]	A	T	8.961e^-5	0.201	INTRON bbc
2R	9379530	2R_9379530_SNP [dm3] 2R_13492025_SNP [dm6]	G	A	8.961e^-5	0.201	INTRON bbc
3R	11643905	3R_11643905_SNP [dm3] 3R_15818183_SNP [dm6]	T	C	8.999e^-5	0.201	INTRON alpha-Man-IIb
2R	16938683	2R_16938683_SNP [dm3] 2R_21051178_SNP [dm6]	A	G	9.001e^-5	0.201	SYNONYMOUS_CODING shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16230885	3L_16230885_SNP [dm3] 3L_16237785_SNP [dm6]	C	T	9.007e^-5	0.201	NON_SYNONYMOUS_CODING l_3_72Dr DOWNSTREAM l_3_72Dp
2R	18243413	2R_18243413_SNP [dm3] 2R_22355908_SNP [dm6]	T	C	9.070e^-5	0.202	INTRON Liprin-gamma
2L	13226870	2L_13226870_SNP [dm3] 2L_13226870_SNP [dm6]	G	T	9.076e^-5	0.202	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1255403	3L_1255403_DEL [dm3] 3L_1255403_DEL [dm6]	AA	G	9.081e^-5	0.202	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	27232091	3R_27232091_SNP [dm3] 3R_31406369_SNP [dm6]	T	A	9.088e^-5	0.202	UPSTREAM CG11337 INTRON Gprk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26878124	3R_26878124_SNP [dm3] 3R_31052402_SNP [dm6]	G	A	9.094e^-5	0.202	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_sbb
2R	12512501	2R_12512501_SNP [dm3] 2R_16624996_SNP [dm6]	T	A	9.098e^-5	0.202	DOWNSTREAM Alk & 1 other INTERGENIC
2R	15397287	2R_15397287_SNP [dm3] 2R_19509782_SNP [dm6]	C	T	9.138e^-5	0.202	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3R	24180073	3R_24180073_SNP [dm3] 3R_28354351_SNP [dm6]	T	C	9.144e^-5	0.202	DOWNSTREAM Or98b INTERGENIC
2R	15333019	2R_15333019_SNP [dm3] 2R_19445514_SNP [dm6]	T	A	9.170e^-5	0.202	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15333054	2R_15333054_SNP [dm3] 2R_19445549_SNP [dm6]	C	T	9.170e^-5	0.202	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14795437	X_14795437_SNP [dm3] X_14901404_SNP [dm6]	G	A	9.172e^-5	0.202	DOWNSTREAM CG9512 INTRON Flo2	TF binding site mE1_TFBS_bab1
3R	11096353	3R_11096353_SNP [dm3] 3R_15270631_SNP [dm6]	A	T	9.195e^-5	0.202	UTR_3_PRIME Cp190 DOWNSTREAM Zip88E
3R	8179236	3R_8179236_SNP [dm3] 3R_12353514_SNP [dm6]	A	T	9.261e^-5	0.203	NON_SYNONYMOUS_CODING MBD-R2
X	3939842	X_3939842_SNP [dm3] X_4045809_SNP [dm6]	G	A	9.268e^-5	0.203	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7871867	3L_7871867_SNP [dm3] 3L_7878767_SNP [dm6]	C	A	9.317e^-5	0.204	INTRON CG32365	TF binding site BDTNP1_TFBS_dl
X	18192793	X_18192793_SNP [dm3] X_18298760_SNP [dm6]	A	G	9.334e^-5	0.204	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8343972	3L_8343972_DEL [dm3] 3L_8350872_DEL [dm6]	GTA	G	9.384e^-5	0.205	SPLICE_SITE_REGION GAPcenA INTRON GAPcenA	TF binding site mE1_TFBS_cad
3R	18871022	3R_18871022_SNP [dm3] 3R_23045300_SNP [dm6]	C	T	9.387e^-5	0.205	SYNONYMOUS_CODING CG17121 DOWNSTREAM CG13837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7823244	3L_7823244_SNP [dm3] 3L_7830144_SNP [dm6]	A	C	9.404e^-5	0.205	INTRON Pdp1
3L	7823246	3L_7823246_SNP [dm3] 3L_7830146_SNP [dm6]	T	A	9.404e^-5	0.205	INTRON Pdp1
2R	11772078	2R_11772078_SNP [dm3] 2R_15884573_SNP [dm6]	G	A	9.416e^-5	0.205	SPLICE_SITE_REGION sli INTRON sli
3L	3567250	3L_3567250_SNP [dm3] 3L_3567250_SNP [dm6]	A	T	9.417e^-5	0.205	INTRON Eip63E
2R	8717856	2R_8717856_SNP [dm3] 2R_12830351_SNP [dm6]	A	G	9.455e^-5	0.205	INTERGENIC
3L	23261605	3L_23261605_SNP [dm3] 3L_23268505_SNP [dm6]	A	T	9.464e^-5	0.205	INTRON nAChRalpha4
3R	3469766	3R_3469766_SNP [dm3] 3R_7644044_SNP [dm6]	T	C	9.488e^-5	0.205	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21457475	X_21457475_SNP [dm3] X_21586448_SNP [dm6]	A	C	9.499e^-5	0.205	INTERGENIC
3R	25100574	3R_25100574_SNP [dm3] 3R_29274852_SNP [dm6]	T	C	9.502e^-5	0.205	INTERGENIC	regulatory region REDfly_CRMs
X	21988054	X_21988054_SNP [dm3] X_22586218_SNP [dm6]	T	C	9.525e^-5	0.205	INTRON Cda4	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	5116391	2R_5116391_SNP [dm3] 2R_9228886_SNP [dm6]	G	A	9.533e^-5	0.205	UTR_3_PRIME hig INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16904663	2R_16904663_SNP [dm3] 2R_21017158_SNP [dm6]	G	A	9.535e^-5	0.205	SYNONYMOUS_CODING CG3295 UPSTREAM RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9107410	2R_9107410_SNP [dm3] 2R_13219905_SNP [dm6]	A	T	9.576e^-5	0.205	UPSTREAM CG4630 & 1 other INTRON CG4646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14792111	X_14792111_SNP [dm3] X_14898078_SNP [dm6]	T	G	9.589e^-5	0.205	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26270038	3R_26270038_SNP [dm3] 3R_30444316_SNP [dm6]	G	T	9.589e^-5	0.205	UPSTREAM CG15537 INTRON Osi23
2R	19535930	2R_19535930_INS [dm3] 2R_23648407_INS [dm6]	T	TGT	9.600e^-5	0.205	INTRON retn	TF binding site BDTNP1_TFBS_dl
3L	5845184	3L_5845184_SNP [dm3] 3L_5852084_SNP [dm6]	A	C	9.605e^-5	0.205	INTERGENIC
3L	23026455	3L_23026455_SNP [dm3] 3L_23033355_SNP [dm6]	G	A	9.611e^-5	0.205	INTRON nrm
3R	20448259	3R_20448259_SNP [dm3] 3R_24622537_SNP [dm6]	C	G	9.627e^-5	0.205	INTRON mld
3R	27209939	3R_27209939_SNP [dm3] 3R_31384217_SNP [dm6]	T	A	9.629e^-5	0.205	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	21394532	2L_21394532_SNP [dm3] 2L_21394532_SNP [dm6]	G	T	9.634e^-5	0.205	INTERGENIC
X	18609156	X_18609156_SNP [dm3] X_18715123_SNP [dm6]	A	G	9.653e^-5	0.205	INTRON CCKLR-17D1
3R	3590223	3R_3590223_SNP [dm3] 3R_7764501_SNP [dm6]	G	C	9.660e^-5	0.205	DOWNSTREAM Sp7 INTERGENIC
3L	12461900	3L_12461900_SNP [dm3] 3L_12468800_SNP [dm6]	T	C	9.669e^-5	0.205	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3R	27350295	3R_27350295_SNP [dm3] 3R_31524573_SNP [dm6]	G	A	9.678e^-5	0.205	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23887295	3R_23887295_SNP [dm3] 3R_28061573_SNP [dm6]	T	A	9.687e^-5	0.205	INTRON CG34362
2R	8309316	2R_8309316_SNP [dm3] 2R_12421811_SNP [dm6]	A	C	9.721e^-5	0.206	INTRON CG8834	TF binding site mE1_TFBS_cad
3R	12550816	3R_12550816_SNP [dm3] 3R_16725094_SNP [dm6]	A	T	9.729e^-5	0.206	INTRON Ubx
2R	11490347	2R_11490347_SNP [dm3] 2R_15602842_SNP [dm6]	T	C	9.756e^-5	0.206	INTERGENIC
2R	11965677	2R_11965677_SNP [dm3] 2R_16078172_SNP [dm6]	G	A	9.788e^-5	0.206	DOWNSTREAM CR43415 INTERGENIC
3R	27316453	3R_27316453_SNP [dm3] 3R_31490731_SNP [dm6]	T	G	9.819e^-5	0.207	UPSTREAM CR45572 INTERGENIC
3R	7403602	3R_7403602_SNP [dm3] 3R_11577880_SNP [dm6]	C	T	9.829e^-5	0.207	NON_SYNONYMOUS_CODING CG6790 UPSTREAM CG5342	TF binding site mE1_TFBS_cad
3R	27310588	3R_27310588_SNP [dm3] 3R_31484866_SNP [dm6]	C	A	9.882e^-5	0.207	INTERGENIC
2R	10872208	2R_10872208_SNP [dm3] 2R_14984703_SNP [dm6]	T	A	9.913e^-5	0.207	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
3R	27230877	3R_27230877_SNP [dm3] 3R_31405155_SNP [dm6]	A	T	9.914e^-5	0.207	UPSTREAM Gprk2 & 1 other INTRON CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11965676	2R_11965676_SNP [dm3] 2R_16078171_SNP [dm6]	G	C	9.930e^-5	0.207	DOWNSTREAM CR43415 INTERGENIC
3R	26999843	3R_26999843_SNP [dm3] 3R_31174121_SNP [dm6]	C	A	9.948e^-5	0.207	INTRON Gycbeta100B
2R	12328786	2R_12328786_SNP [dm3] 2R_16441281_SNP [dm6]	T	G	9.950e^-5	0.207	INTERGENIC
2R	12330188	2R_12330188_SNP [dm3] 2R_16442683_SNP [dm6]	C	T	9.950e^-5	0.207	UPSTREAM CG4409 INTERGENIC
2R	12330203	2R_12330203_SNP [dm3] 2R_16442698_SNP [dm6]	T	A	9.950e^-5	0.207	UPSTREAM CG4409 INTERGENIC
3R	7506418	3R_7506418_SNP [dm3] 3R_11680696_SNP [dm6]	G	T	9.954e^-5	0.207	NON_SYNONYMOUS_CODING Ho DOWNSTREAM CG6830	TF binding site mE1_TFBS_HSA
3R	7507012	3R_7507012_SNP [dm3] 3R_11681290_SNP [dm6]	C	T	9.954e^-5	0.207	NON_SYNONYMOUS_CODING CG6830 DOWNSTREAM Ho	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3470173	3R_3470173_SNP [dm3] 3R_7644451_SNP [dm6]	C	A	9.979e^-5	0.207	INTERGENIC
3R	26070670	3R_26070670_SNP [dm3] 3R_30244948_SNP [dm6]	T	A	9.980e^-5	0.207	INTRON CG9733
3R	14605311	3R_14605311_SNP [dm3] 3R_18779589_SNP [dm6]	C	A	9.997e^-5	0.207	UPSTREAM CG7720 INTRON CG7720
X	18188988	X_18188988_SNP [dm3] X_18294955_SNP [dm6]	T	A	1.004e^-4	0.207	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5152085	2L_5152085_DEL [dm3] 2L_5152085_DEL [dm6]	CAGCAAC	C	1.006e^-4	0.207	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site mE1_TFBS_inv
3R	3475135	3R_3475135_SNP [dm3] 3R_7649413_SNP [dm6]	C	T	1.007e^-4	0.207	INTERGENIC
3R	3490470	3R_3490470_SNP [dm3] 3R_7664748_SNP [dm6]	G	T	1.007e^-4	0.207	INTRON Nlg1
3R	3629905	3R_3629905_SNP [dm3] 3R_7804183_SNP [dm6]	C	T	1.007e^-4	0.207	NON_SYNONYMOUS_CODING CG18268 DOWNSTREAM CG2993
3R	3644006	3R_3644006_SNP [dm3] 3R_7818284_SNP [dm6]	G	A	1.007e^-4	0.207	INTRON CG34384
2R	8717885	2R_8717885_SNP [dm3] 2R_12830380_SNP [dm6]	C	A	1.008e^-4	0.207	INTERGENIC
3L	5848389	3L_5848389_SNP [dm3] 3L_5855289_SNP [dm6]	A	G	1.011e^-4	0.208	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	9737554	X_9737554_INS [dm3] X_9843521_INS [dm6]	C	CTACT	1.013e^-4	0.208	INTRON CG32698	TF binding site mE1_TFBS_inv
2R	2626827	2R_2626827_SNP [dm3] 2R_6739322_SNP [dm6]	A	C	1.013e^-4	0.208	INTRON l_2_01289
3R	26999988	3R_26999988_SNP [dm3] 3R_31174266_SNP [dm6]	A	G	1.016e^-4	0.208	INTRON Gycbeta100B
3L	10933221	3L_10933221_DEL [dm3] 3L_10940121_DEL [dm6]	GACCACGCAGACGCAGCGGT...	G	1.019e^-4	0.208	INTERGENIC
3L	8150373	3L_8150373_SNP [dm3] 3L_8157273_SNP [dm6]	C	T	1.021e^-4	0.208	INTRON CG42445
2L	4508804	2L_4508804_SNP [dm3] 2L_4508804_SNP [dm6]	T	C	1.022e^-4	0.208	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15642950	3L_15642950_SNP [dm3] 3L_15649850_SNP [dm6]	C	G	1.023e^-4	0.208	UPSTREAM Eig71Eb & 1 other DOWNSTREAM CG43083 INTERGENIC
X	6331536	X_6331536_SNP [dm3] X_6437503_SNP [dm6]	A	G	1.023e^-4	0.208	INTRON CG42340
X	2245190	X_2245190_SNP [dm3] X_2351157_SNP [dm6]	G	C	1.025e^-4	0.209	INTRON ptr
2L	12824297	2L_12824297_SNP [dm3] 2L_12824297_SNP [dm6]	C	T	1.032e^-4	0.21	INTERGENIC
X	14779407	X_14779407_SNP [dm3] X_14885374_SNP [dm6]	A	G	1.033e^-4	0.21	DOWNSTREAM CG9514 INTRON Flo2
2R	8734738	2R_8734738_SNP [dm3] 2R_12847233_SNP [dm6]	A	G	1.035e^-4	0.21	SYNONYMOUS_CODING antr UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486
3L	19968271	3L_19968271_SNP [dm3] 3L_19975171_SNP [dm6]	T	C	1.035e^-4	0.21	INTRON Ac76E
3L	6810632	3L_6810632_SNP [dm3] 3L_6817532_SNP [dm6]	A	G	1.042e^-4	0.21	INTERGENIC	regulatory region REDfly_CRMs
3L	8694166	3L_8694166_SNP [dm3] 3L_8701066_SNP [dm6]	A	T	1.042e^-4	0.21	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10527509	2R_10527509_SNP [dm3] 2R_14640004_SNP [dm6]	C	A	1.042e^-4	0.21	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	27230765	3R_27230765_SNP [dm3] 3R_31405043_SNP [dm6]	C	G	1.050e^-4	0.212	UPSTREAM Gprk2 & 1 other INTRON CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16608174	2R_16608174_SNP [dm3] 2R_20720669_SNP [dm6]	G	A	1.052e^-4	0.212	INTRON dpr
3R	4283876	3R_4283876_SNP [dm3] 3R_8458154_SNP [dm6]	C	A	1.053e^-4	0.212	INTRON CG45263
3R	4283790	3R_4283790_SNP [dm3] 3R_8458068_SNP [dm6]	G	A	1.055e^-4	0.212	INTRON CG45263
3R	13612813	3R_13612813_SNP [dm3] 3R_17787091_SNP [dm6]	T	C	1.058e^-4	0.213	INTRON CG43102
3R	8177174	3R_8177174_SNP [dm3] 3R_12351452_SNP [dm6]	G	A	1.061e^-4	0.213	SYNONYMOUS_CODING CG10041 UPSTREAM CG10038 DOWNSTREAM MBD-R2	TF binding site mE1_TFBS_cad
2L	18199171	2L_18199171_SNP [dm3] 2L_18199171_SNP [dm6]	G	A	1.061e^-4	0.213	INTRON CG42750
X	9408227	X_9408227_SNP [dm3] X_9514194_SNP [dm6]	T	C	1.063e^-4	0.213	INTRON CG32700
3R	7511510	3R_7511510_SNP [dm3] 3R_11685788_SNP [dm6]	A	C	1.066e^-4	0.213	NON_SYNONYMOUS_CODING CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25634457	3R_25634457_SNP [dm3] 3R_29808735_SNP [dm6]	C	T	1.066e^-4	0.213	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13659992	2R_13659992_SNP [dm3] 2R_17772487_SNP [dm6]	A	T	1.067e^-4	0.213	SYNONYMOUS_CODING CG6362	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4152465	2L_4152465_SNP [dm3] 2L_4152465_SNP [dm6]	C	A	1.067e^-4	0.213	INTERGENIC
3L	7088758	3L_7088758_SNP [dm3] 3L_7095658_SNP [dm6]	A	T	1.072e^-4	0.213	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	26492378	3R_26492378_SNP [dm3] 3R_30666656_SNP [dm6]	C	T	1.072e^-4	0.213	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad
X	19738957	X_19738957_SNP [dm3] X_19844924_SNP [dm6]	C	T	1.078e^-4	0.214	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2145158	X_2145158_SNP [dm3] X_2251125_SNP [dm6]	T	A	1.078e^-4	0.214	INTRON CG3191	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	2145161	X_2145161_SNP [dm3] X_2251128_SNP [dm6]	A	G	1.078e^-4	0.214	INTRON CG3191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5197807	2L_5197807_SNP [dm3] 2L_5197807_SNP [dm6]	A	T	1.082e^-4	0.214	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3R	3471120	3R_3471120_SNP [dm3] 3R_7645398_SNP [dm6]	A	C	1.083e^-4	0.214	INTERGENIC
3L	22597306	3L_22597306_SNP [dm3] 3L_22604206_SNP [dm6]	T	C	1.084e^-4	0.214	INTRON CG14459
2R	10873942	2R_10873942_SNP [dm3] 2R_14986437_SNP [dm6]	G	A	1.092e^-4	0.215	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	16510565	X_16510565_SNP [dm3] X_16616532_SNP [dm6]	A	G	1.094e^-4	0.215	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
3L	16888901	3L_16888901_SNP [dm3] 3L_16895801_SNP [dm6]	G	A	1.097e^-4	0.215	INTRON Lmpt
2L	17807633	2L_17807633_SNP [dm3] 2L_17807633_SNP [dm6]	G	A	1.097e^-4	0.215	INTRON CadN2
3R	21110752	3R_21110752_SNP [dm3] 3R_25285030_SNP [dm6]	T	A	1.098e^-4	0.215	SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	13058895	3R_13058895_DEL [dm3] 3R_17233173_DEL [dm6]	CGGAAATATTTTCTTTTC...	C	1.099e^-4	0.215	INTRON beat-IIb
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	1.099e^-4	0.215	INTRON Nlg1
X	21337658	X_21337658_SNP [dm3] X_21466631_SNP [dm6]	T	A	1.100e^-4	0.215	DOWNSTREAM CR45507 INTERGENIC
3R	22905179	3R_22905179_SNP [dm3] 3R_27079457_SNP [dm6]	G	A	1.101e^-4	0.215	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9524038	2R_9524038_INS [dm3] 2R_13636533_INS [dm6]	T	TTT	1.102e^-4	0.215	INTRON fas
2R	8787211	2R_8787211_SNP [dm3] 2R_12899706_SNP [dm6]	A	T	1.104e^-4	0.216	DOWNSTREAM vg INTERGENIC
2R	19995313	2R_19995313_SNP [dm3] 2R_24107790_SNP [dm6]	G	T	1.107e^-4	0.216	UTR_3_PRIME CG4049 DOWNSTREAM enok
3R	4293937	3R_4293937_SNP [dm3] 3R_8468215_SNP [dm6]	G	T	1.111e^-4	0.217	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18308091	X_18308091_SNP [dm3] X_18414058_SNP [dm6]	T	A	1.113e^-4	0.217	INTERGENIC
3L	8557985	3L_8557985_SNP [dm3] 3L_8564885_SNP [dm6]	T	C	1.115e^-4	0.217	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8557991	3L_8557991_SNP [dm3] 3L_8564891_SNP [dm6]	G	A	1.115e^-4	0.217	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27325670	3R_27325670_SNP [dm3] 3R_31499948_SNP [dm6]	A	T	1.117e^-4	0.217	INTRON mey	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11505068	3L_11505068_SNP [dm3] 3L_11511968_SNP [dm6]	G	C	1.117e^-4	0.217	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	6101965	3L_6101965_SNP [dm3] 3L_6108865_SNP [dm6]	G	T	1.118e^-4	0.217	INTRON Ets65A
3L	9592887	3L_9592887_SNP [dm3] 3L_9599787_SNP [dm6]	T	C	1.122e^-4	0.217	SYNONYMOUS_CODING CG3222 DOWNSTREAM CG3088	TF binding site mE1_TFBS_cad
2R	20167145	2R_20167145_SNP [dm3] 2R_24279622_SNP [dm6]	A	T	1.122e^-4	0.217	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	20367884	3R_20367884_SNP [dm3] 3R_24542162_SNP [dm6]	G	T	1.122e^-4	0.217	INTRON CG5789
2L	3983150	2L_3983150_SNP [dm3] 2L_3983150_SNP [dm6]	T	C	1.131e^-4	0.218	INTRON fred
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	1.131e^-4	0.218	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	18192544	X_18192544_SNP [dm3] X_18298511_SNP [dm6]	T	C	1.141e^-4	0.219	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	14134901	3R_14134901_SNP [dm3] 3R_18309179_SNP [dm6]	G	C	1.144e^-4	0.219	UTR_5_PRIME PKD
2R	9814936	2R_9814936_SNP [dm3] 2R_13927431_SNP [dm6]	T	C	1.145e^-4	0.219	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15249883	3R_15249883_SNP [dm3] 3R_19424161_SNP [dm6]	C	T	1.146e^-4	0.219	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
3L	11054855	3L_11054855_SNP [dm3] 3L_11061755_SNP [dm6]	G	A	1.147e^-4	0.219	SYNONYMOUS_CODING Blos2 UPSTREAM CG6321 DOWNSTREAM CG32069 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	3940223	3L_3940223_SNP [dm3] 3L_3940223_SNP [dm6]	C	G	1.149e^-4	0.219	UPSTREAM CR43916 & 1 other DOWNSTREAM CG10863 INTERGENIC
3R	5750881	3R_5750881_DEL [dm3] 3R_9925159_DEL [dm6]	AA	G	1.149e^-4	0.219	INTRON Glut4EF
3L	11976568	3L_11976568_SNP [dm3] 3L_11983468_SNP [dm6]	T	A	1.149e^-4	0.219	NON_SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo
3R	16111698	3R_16111698_SNP [dm3] 3R_20285976_SNP [dm6]	G	T	1.151e^-4	0.219	INTRON cic
2R	17431799	2R_17431799_SNP [dm3] 2R_21544294_SNP [dm6]	T	G	1.154e^-4	0.219	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	25893952	3R_25893952_SNP [dm3] 3R_30068230_SNP [dm6]	A	G	1.154e^-4	0.219	INTRON sima
3R	25893971	3R_25893971_SNP [dm3] 3R_30068249_SNP [dm6]	C	T	1.154e^-4	0.219	INTRON sima
3R	6830575	3R_6830575_DEL [dm3] 3R_11004853_DEL [dm6]	CGC	C	1.156e^-4	0.219	INTRON CG34114
3R	3189678	3R_3189678_SNP [dm3] 3R_7363956_SNP [dm6]	G	T	1.158e^-4	0.219	UPSTREAM Mst84Dd DOWNSTREAM Mst84Dc INTERGENIC
3R	5273741	3R_5273741_SNP [dm3] 3R_9448019_SNP [dm6]	G	A	1.159e^-4	0.219	UTR_3_PRIME ps
X	17596131	X_17596131_SNP [dm3] X_17702098_SNP [dm6]	T	C	1.159e^-4	0.219	INTRON CG8188	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
3L	9040796	3L_9040796_SNP [dm3] 3L_9047696_SNP [dm6]	A	G	1.159e^-4	0.219	SYNONYMOUS_CODING CG5144	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	23053537	3L_23053537_SNP [dm3] 3L_23060437_SNP [dm6]	C	T	1.160e^-4	0.219	INTERGENIC	transposable element FlyBase
X	8804292	X_8804292_INS [dm3] X_8910259_INS [dm6]	A	AGCTTAA	1.163e^-4	0.219	INTRON rdgA
2L	2308786	2L_2308786_SNP [dm3] 2L_2308786_SNP [dm6]	C	A	1.164e^-4	0.219	UTR_3_PRIME CG16995 & 1 other DOWNSTREAM CG9967
2R	19151227	2R_19151227_SNP [dm3] 2R_23263704_SNP [dm6]	G	A	1.164e^-4	0.219	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19151228	2R_19151228_SNP [dm3] 2R_23263705_SNP [dm6]	A	T	1.164e^-4	0.219	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2088576	3R_2088576_SNP [dm3] 3R_6262854_SNP [dm6]	A	T	1.166e^-4	0.219	DOWNSTREAM Osi9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21110740	3R_21110740_SNP [dm3] 3R_25285018_SNP [dm6]	G	C	1.169e^-4	0.219	NON_SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	3471465	3R_3471465_SNP [dm3] 3R_7645743_SNP [dm6]	T	G	1.169e^-4	0.219	INTERGENIC
3R	10884160	3R_10884160_SNP [dm3] 3R_15058438_SNP [dm6]	T	A	1.174e^-4	0.219	INTRON dpr9
3R	10884165	3R_10884165_SNP [dm3] 3R_15058443_SNP [dm6]	A	T	1.174e^-4	0.219	INTRON dpr9
2R	11690242	2R_11690242_SNP [dm3] 2R_15802737_SNP [dm6]	G	A	1.175e^-4	0.219	INTRON Zasp52 & 1 other
2R	4692069	2R_4692069_SNP [dm3] 2R_8804564_SNP [dm6]	C	T	1.177e^-4	0.219	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25966378	3R_25966378_SNP [dm3] 3R_30140656_SNP [dm6]	G	A	1.177e^-4	0.219	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25966410	3R_25966410_SNP [dm3] 3R_30140688_SNP [dm6]	T	A	1.177e^-4	0.219	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8635557	2R_8635557_SNP [dm3] 2R_12748052_SNP [dm6]	T	C	1.178e^-4	0.219	INTRON CG42663
X	18608912	X_18608912_SNP [dm3] X_18714879_SNP [dm6]	C	T	1.178e^-4	0.219	INTRON CCKLR-17D1
X	18597904	X_18597904_SNP [dm3] X_18703871_SNP [dm6]	G	T	1.178e^-4	0.219	INTERGENIC
2R	10007376	2R_10007376_SNP [dm3] 2R_14119871_SNP [dm6]	T	C	1.183e^-4	0.22	INTRON Prosap	TF binding site mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Microbiota_OTU008 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results