DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.476e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.0102365

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.9724	0.0847

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2833 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5968820	2L_5968820_SNP [dm3] 2L_5968820_SNP [dm6]	A	G	1.040e^-7	0.083	SYNONYMOUS_CODING Ucp4C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6381735	2R_6381735_SNP [dm3] 2R_10494230_SNP [dm6]	T	C	2.154e^-7	0.083	INTRON lola
X	6772781	X_6772781_SNP [dm3] X_6878748_SNP [dm6]	G	A	2.264e^-7	0.083	NON_SYNONYMOUS_CODING CG43736 UTR_3_PRIME CG43736	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3348146	X_3348146_SNP [dm3] X_3454113_SNP [dm6]	A	T	2.380e^-7	0.083	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3348142	X_3348142_SNP [dm3] X_3454109_SNP [dm6]	A	T	3.488e^-7	0.083	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3348153	X_3348153_SNP [dm3] X_3454120_SNP [dm6]	T	C	3.488e^-7	0.083	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3348200	X_3348200_SNP [dm3] X_3454167_SNP [dm6]	A	C	3.488e^-7	0.083	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3348130	X_3348130_SNP [dm3] X_3454097_SNP [dm6]	A	G	3.574e^-7	0.083	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3348184	X_3348184_SNP [dm3] X_3454151_SNP [dm6]	C	T	4.770e^-7	0.09	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3348168	X_3348168_SNP [dm3] X_3454135_SNP [dm6]	A	G	5.159e^-7	0.09	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5112616	2L_5112616_SNP [dm3] 2L_5112616_SNP [dm6]	G	A	5.312e^-7	0.09	INTRON Msp300
2L	916727	2L_916727_SNP [dm3] 2L_916727_SNP [dm6]	G	C	7.507e^-7	0.116	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14520367	3R_14520367_SNP [dm3] 3R_18694645_SNP [dm6]	A	G	9.761e^-7	0.14	UPSTREAM CG14300 & 1 other INTERGENIC
3R	20577159	3R_20577159_SNP [dm3] 3R_24751437_SNP [dm6]	A	C	1.100e^-6	0.146	SYNONYMOUS_CODING tld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18388834	3L_18388834_SNP [dm3] 3L_18395734_SNP [dm6]	G	A	1.577e^-6	0.196	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20422830	3L_20422830_SNP [dm3] 3L_20429730_SNP [dm6]	G	C	2.277e^-6	0.256	NON_SYNONYMOUS_CODING CG5262 DOWNSTREAM Las	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3R	17935564	3R_17935564_SNP [dm3] 3R_22109842_SNP [dm6]	G	A	2.336e^-6	0.256	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6550305	3L_6550305_SNP [dm3] 3L_6557205_SNP [dm6]	G	A	2.803e^-6	0.271	INTRON CG18769
3L	18388564	3L_18388564_SNP [dm3] 3L_18395464_SNP [dm6]	G	A	2.882e^-6	0.271	INTERGENIC
3L	18388454	3L_18388454_SNP [dm3] 3L_18395354_SNP [dm6]	G	C	3.000e^-6	0.271	INTERGENIC
3R	4383179	3R_4383179_SNP [dm3] 3R_8557457_SNP [dm6]	G	A	3.058e^-6	0.271	INTERGENIC
3R	26070275	3R_26070275_SNP [dm3] 3R_30244553_SNP [dm6]	C	T	3.239e^-6	0.274	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21891525	2L_21891525_SNP [dm3] 2L_21891525_SNP [dm6]	A	G	3.697e^-6	0.294	UPSTREAM CR45362 INTERGENIC
2L	2867117	2L_2867117_SNP [dm3] 2L_2867117_SNP [dm6]	T	C	4.205e^-6	0.294	SYNONYMOUS_CODING CG2991
3L	10338434	3L_10338434_SNP [dm3] 3L_10345334_SNP [dm6]	G	C	4.522e^-6	0.294	INTERGENIC
3L	10338436	3L_10338436_SNP [dm3] 3L_10345336_SNP [dm6]	G	C	4.522e^-6	0.294	INTERGENIC
2R	9817658	2R_9817658_SNP [dm3] 2R_13930153_SNP [dm6]	C	T	4.653e^-6	0.294	INTRON shot
3L	24224288	3L_24224288_SNP [dm3] 3L_24231188_SNP [dm6]	G	A	4.775e^-6	0.294	INTRON Snap25
3R	26009893	3R_26009893_SNP [dm3] 3R_30184171_SNP [dm6]	A	G	4.956e^-6	0.294	EXON CR44262
3R	14524534	3R_14524534_SNP [dm3] 3R_18698812_SNP [dm6]	A	T	5.071e^-6	0.294	INTERGENIC
3R	20576948	3R_20576948_SNP [dm3] 3R_24751226_SNP [dm6]	C	T	5.392e^-6	0.294	SYNONYMOUS_CODING tld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10338440	3L_10338440_DEL [dm3] 3L_10345340_DEL [dm6]	AT	A	5.523e^-6	0.294	INTERGENIC
3L	10283261	3L_10283261_SNP [dm3] 3L_10290161_SNP [dm6]	C	A	5.958e^-6	0.294	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20577104	3R_20577104_SNP [dm3] 3R_24751382_SNP [dm6]	C	T	6.089e^-6	0.294	SYNONYMOUS_CODING tld	TF binding site mE1_TFBS_cad
2R	18665573	2R_18665573_MNP [dm3] 2R_22778068_MNP [dm6]	AGCA	GAGG	6.175e^-6	0.294	INTRON CG42260
2R	18665544	2R_18665544_DEL [dm3] 2R_22778039_DEL [dm6]	CGCCAGAGG	C	6.527e^-6	0.294	INTRON CG42260
2R	18665570	2R_18665570_SNP [dm3] 2R_22778065_SNP [dm6]	G	A	6.550e^-6	0.294	INTRON CG42260
X	11671740	X_11671740_SNP [dm3] X_11777707_SNP [dm6]	A	G	6.604e^-6	0.294	INTRON dy
X	8367955	X_8367955_SNP [dm3] X_8473922_SNP [dm6]	G	A	6.717e^-6	0.294	NON_SYNONYMOUS_CODING Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
3R	13417750	3R_13417750_SNP [dm3] 3R_17592028_SNP [dm6]	T	C	6.800e^-6	0.294	INTERGENIC
3L	18388589	3L_18388589_SNP [dm3] 3L_18395489_SNP [dm6]	A	T	6.822e^-6	0.294	INTERGENIC
3L	420225	3L_420225_SNP [dm3] 3L_420225_SNP [dm6]	T	C	6.845e^-6	0.294	INTERGENIC
3L	420375	3L_420375_SNP [dm3] 3L_420375_SNP [dm6]	G	A	6.845e^-6	0.294	INTERGENIC
3R	11788236	3R_11788236_SNP [dm3] 3R_15962514_SNP [dm6]	C	T	7.156e^-6	0.294	UTR_3_PRIME CG4287 DOWNSTREAM Sap47
2L	9572272	2L_9572272_SNP [dm3] 2L_9572272_SNP [dm6]	T	C	7.196e^-6	0.294	SYNONYMOUS_CODING CG3838
X	11671017	X_11671017_SNP [dm3] X_11776984_SNP [dm6]	A	G	7.510e^-6	0.294	INTRON dy	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18665528	2R_18665528_DEL [dm3] 2R_22778023_DEL [dm6]	TGAATCC	T	7.604e^-6	0.294	INTRON CG42260
2R	6382789	2R_6382789_SNP [dm3] 2R_10495284_SNP [dm6]	T	A	7.634e^-6	0.294	INTRON lola
2R	19164414	2R_19164414_SNP [dm3] 2R_23276891_SNP [dm6]	T	C	7.733e^-6	0.294	INTERGENIC
2R	18665556	2R_18665556_DEL [dm3] 2R_22778051_DEL [dm6]	AGTGTCGACCGAC...	A	8.129e^-6	0.302	INTRON CG42260
3L	3122822	3L_3122822_DEL [dm3] 3L_3122822_DEL [dm6]	CC	C	8.583e^-6	0.303	UPSTREAM tRNA:CR32273 INTRON prominin-like
3L	18388585	3L_18388585_SNP [dm3] 3L_18395485_SNP [dm6]	G	A	8.717e^-6	0.303	INTERGENIC
2R	19297599	2R_19297599_SNP [dm3] 2R_23410076_SNP [dm6]	C	T	8.844e^-6	0.303	INTERGENIC
2L	21913412	2L_21913412_SNP [dm3] 2L_21913412_SNP [dm6]	C	T	8.869e^-6	0.303	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
2L	21913750	2L_21913750_SNP [dm3] 2L_21913750_SNP [dm6]	A	T	9.408e^-6	0.303	DOWNSTREAM CG31600 INTERGENIC
3L	7152231	3L_7152231_SNP [dm3] 3L_7159131_SNP [dm6]	C	T	9.534e^-6	0.303	DOWNSTREAM Dscam2 & 1 other INTERGENIC
2L	14183367	2L_14183367_SNP [dm3] 2L_14183367_SNP [dm6]	G	T	9.575e^-6	0.303	INTERGENIC
3L	10989699	3L_10989699_SNP [dm3] 3L_10996599_SNP [dm6]	T	A	9.599e^-6	0.303	INTRON klu	TF binding site BDTNP1_TFBS_da
2L	16707318	2L_16707318_SNP [dm3] 2L_16707318_SNP [dm6]	C	A	9.610e^-6	0.303	INTRON CG31808
X	13187524	X_13187524_SNP [dm3] X_13293491_SNP [dm6]	C	T	9.791e^-6	0.304	SYNONYMOUS_CODING CG15744 DOWNSTREAM CG1764
2R	14116338	2R_14116338_SNP [dm3] 2R_18228833_SNP [dm6]	C	T	1.055e^-5	0.317	DOWNSTREAM CR45310 EXON CR45311
2R	10323995	2R_10323995_SNP [dm3] 2R_14436490_SNP [dm6]	C	T	1.092e^-5	0.317	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	10338574	3L_10338574_SNP [dm3] 3L_10345474_SNP [dm6]	T	A	1.105e^-5	0.317	INTERGENIC
2L	14024259	2L_14024259_DEL [dm3] 2L_14024259_DEL [dm6]	TAT	T	1.111e^-5	0.317	UPSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9817619	2R_9817619_SNP [dm3] 2R_13930114_SNP [dm6]	A	G	1.120e^-5	0.317	INTRON shot
X	11671741	X_11671741_SNP [dm3] X_11777708_SNP [dm6]	A	T	1.125e^-5	0.317	INTRON dy
X	3349115	X_3349115_SNP [dm3] X_3455082_SNP [dm6]	C	T	1.145e^-5	0.318	INTRON CR44999
3L	18915833	3L_18915833_SNP [dm3] 3L_18922733_SNP [dm6]	T	C	1.175e^-5	0.318	UTR_3_PRIME CG32204 UPSTREAM CG3819
2R	7818433	2R_7818433_SNP [dm3] 2R_11930928_SNP [dm6]	C	G	1.180e^-5	0.318	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	3350178	X_3350178_DEL [dm3] X_3456145_DEL [dm6]	TTTT	T	1.227e^-5	0.322	INTRON CR44999
X	13187637	X_13187637_SNP [dm3] X_13293604_SNP [dm6]	C	A	1.231e^-5	0.322	NON_SYNONYMOUS_CODING CG15744 DOWNSTREAM CG1764
X	11671627	X_11671627_SNP [dm3] X_11777594_SNP [dm6]	A	C	1.247e^-5	0.322	INTRON dy
2R	18665521	2R_18665521_DEL [dm3] 2R_22778016_DEL [dm6]	TA	G	1.297e^-5	0.322	INTRON CG42260
2R	18665526	2R_18665526_SNP [dm3] 2R_22778021_SNP [dm6]	A	T	1.297e^-5	0.322	INTRON CG42260
2L	6978291	2L_6978291_SNP [dm3] 2L_6978291_SNP [dm6]	G	A	1.299e^-5	0.322	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16306925	3L_16306925_INS [dm3] 3L_16313825_INS [dm6]	A	AGAGGTAAAAACTTGTTTGC...	1.340e^-5	0.328	UPSTREAM CG13062 INTERGENIC
3L	24292019	3L_24292019_SNP [dm3] 3L_24298919_SNP [dm6]	A	C	1.389e^-5	0.33	UTR_3_PRIME Snap25
X	14195840	X_14195840_SNP [dm3] X_14301807_SNP [dm6]	A	T	1.394e^-5	0.33	INTERGENIC
3R	18490175	3R_18490175_SNP [dm3] 3R_22664453_SNP [dm6]	C	A	1.401e^-5	0.33	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15262577	3R_15262577_SNP [dm3] 3R_19436855_SNP [dm6]	A	G	1.418e^-5	0.33	INTRON CG31221
2R	14140809	2R_14140809_SNP [dm3] 2R_18253304_SNP [dm6]	T	A	1.454e^-5	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11671617	X_11671617_SNP [dm3] X_11777584_SNP [dm6]	C	T	1.468e^-5	0.332	INTRON dy
2R	6058508	2R_6058508_SNP [dm3] 2R_10171003_SNP [dm6]	G	A	1.511e^-5	0.332	INTRON KCNQ
X	3349640	X_3349640_SNP [dm3] X_3455607_SNP [dm6]	G	A	1.548e^-5	0.332	INTRON CR44999
3L	10338535	3L_10338535_SNP [dm3] 3L_10345435_SNP [dm6]	T	A	1.558e^-5	0.332	INTERGENIC
X	11671625	X_11671625_SNP [dm3] X_11777592_SNP [dm6]	C	A	1.560e^-5	0.332	INTRON dy
X	11671595	X_11671595_SNP [dm3] X_11777562_SNP [dm6]	G	T	1.565e^-5	0.332	INTRON dy	TF binding site mE1_TFBS_Trl
X	8367912	X_8367912_SNP [dm3] X_8473879_SNP [dm6]	A	G	1.568e^-5	0.332	SYNONYMOUS_CODING Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
3L	13980536	3L_13980536_SNP [dm3] 3L_13987436_SNP [dm6]	A	T	1.596e^-5	0.334	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2L	8585314	2L_8585314_SNP [dm3] 2L_8585314_SNP [dm6]	A	G	1.648e^-5	0.334	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19244391	X_19244391_SNP [dm3] X_19350358_SNP [dm6]	G	A	1.694e^-5	0.334	INTERGENIC
3L	10338706	3L_10338706_SNP [dm3] 3L_10345606_SNP [dm6]	A	G	1.722e^-5	0.334	INTERGENIC
2R	14140936	2R_14140936_SNP [dm3] 2R_18253431_SNP [dm6]	T	G	1.758e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8541526	3L_8541526_SNP [dm3] 3L_8548426_SNP [dm6]	G	A	1.801e^-5	0.334	INTRON rhea	TF binding site mE1_TFBS_inv
2L	16113853	2L_16113853_SNP [dm3] 2L_16113853_SNP [dm6]	T	C	1.840e^-5	0.334	INTERGENIC
X	3349612	X_3349612_SNP [dm3] X_3455579_SNP [dm6]	T	C	1.846e^-5	0.334	INTRON CR44999
X	3349618	X_3349618_DEL [dm3] X_3455585_DEL [dm6]	CTC	C	1.846e^-5	0.334	INTRON CR44999
3R	20576765	3R_20576765_SNP [dm3] 3R_24751043_SNP [dm6]	T	C	1.860e^-5	0.334	SYNONYMOUS_CODING tld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7816381	2R_7816381_SNP [dm3] 2R_11928876_SNP [dm6]	T	C	1.861e^-5	0.334	DOWNSTREAM CR44312 INTERGENIC
2R	16795600	2R_16795600_DEL [dm3] 2R_20908095_DEL [dm6]	AAA	A	1.865e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	15060318	2R_15060318_SNP [dm3] 2R_19172813_SNP [dm6]	C	T	1.865e^-5	0.334	SYNONYMOUS_CODING CG10737
2L	10556569	2L_10556569_SNP [dm3] 2L_10556569_SNP [dm6]	C	T	1.924e^-5	0.334	INTRON Trim9
3R	19531830	3R_19531830_SNP [dm3] 3R_23706108_SNP [dm6]	C	T	1.948e^-5	0.334	SPLICE_SITE_REGION CG31414 DOWNSTREAM CR44052 INTRON CG31414
X	3349622	X_3349622_DEL [dm3] X_3455589_DEL [dm6]	TAAACGATCATA...	T	1.952e^-5	0.334	INTRON CR44999
X	3349635	X_3349635_SNP [dm3] X_3455602_SNP [dm6]	C	G	1.952e^-5	0.334	INTRON CR44999
X	3349638	X_3349638_SNP [dm3] X_3455605_SNP [dm6]	A	T	1.952e^-5	0.334	INTRON CR44999
X	3349644	X_3349644_DEL [dm3] X_3455611_DEL [dm6]	ATATGTATATGTATATAT...	A	1.952e^-5	0.334	INTRON CR44999
X	3349668	X_3349668_SNP [dm3] X_3455635_SNP [dm6]	T	A	1.952e^-5	0.334	INTRON CR44999
3R	4103792	3R_4103792_SNP [dm3] 3R_8278070_SNP [dm6]	G	C	1.965e^-5	0.334	UTR_5_PRIME ato	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3307249	X_3307249_SNP [dm3] X_3413216_SNP [dm6]	A	G	1.988e^-5	0.334	INTRON CR44999 & 1 other
3R	24170542	3R_24170542_SNP [dm3] 3R_28344820_SNP [dm6]	G	A	2.056e^-5	0.334	SYNONYMOUS_CODING Moca-cyp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3349642	X_3349642_SNP [dm3] X_3455609_SNP [dm6]	A	T	2.062e^-5	0.334	INTRON CR44999
2L	7263556	2L_7263556_SNP [dm3] 2L_7263556_SNP [dm6]	T	G	2.077e^-5	0.334	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10189771	2L_10189771_SNP [dm3] 2L_10189771_SNP [dm6]	A	G	2.079e^-5	0.334	DOWNSTREAM CG31874 INTRON Sur
X	19888522	X_19888522_SNP [dm3] X_19994489_SNP [dm6]	G	C	2.083e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19888523	X_19888523_SNP [dm3] X_19994490_SNP [dm6]	T	C	2.083e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10338498	3L_10338498_SNP [dm3] 3L_10345398_SNP [dm6]	C	A	2.131e^-5	0.334	INTERGENIC
2R	835063	2R_835063_MNP [dm3] 2R_4947558_MNP [dm6]	TAG	ATC	2.155e^-5	0.334	INTRON Ir41a
2R	14474000	2R_14474000_SNP [dm3] 2R_18586495_SNP [dm6]	T	C	2.168e^-5	0.334	INTRON GEFmeso
3R	4155012	3R_4155012_SNP [dm3] 3R_8329290_SNP [dm6]	A	T	2.171e^-5	0.334	INTRON Poxm
3R	26853779	3R_26853779_SNP [dm3] 3R_31028057_SNP [dm6]	C	T	2.224e^-5	0.334	INTERGENIC
3R	26853780	3R_26853780_SNP [dm3] 3R_31028058_SNP [dm6]	C	T	2.224e^-5	0.334	INTERGENIC
3R	13417745	3R_13417745_SNP [dm3] 3R_17592023_SNP [dm6]	G	T	2.269e^-5	0.334	INTERGENIC
2R	17427672	2R_17427672_SNP [dm3] 2R_21540167_SNP [dm6]	C	T	2.304e^-5	0.334	NON_SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24504367	3R_24504367_SNP [dm3] 3R_28678645_SNP [dm6]	G	C	2.308e^-5	0.334	INTRON CG9990
X	7466250	X_7466250_INS [dm3] X_7572217_INS [dm6]	T	TT	2.390e^-5	0.334	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	10216940	3L_10216940_SNP [dm3] 3L_10223840_SNP [dm6]	T	A	2.396e^-5	0.334	UPSTREAM scramb1 INTRON scramb1
3L	13980577	3L_13980577_SNP [dm3] 3L_13987477_SNP [dm6]	A	G	2.465e^-5	0.334	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	18388291	3L_18388291_SNP [dm3] 3L_18395191_SNP [dm6]	C	A	2.476e^-5	0.334	INTERGENIC
3L	18388294	3L_18388294_SNP [dm3] 3L_18395194_SNP [dm6]	G	A	2.476e^-5	0.334	INTERGENIC
3L	18388526	3L_18388526_SNP [dm3] 3L_18395426_SNP [dm6]	A	T	2.476e^-5	0.334	INTERGENIC
3L	18388776	3L_18388776_SNP [dm3] 3L_18395676_SNP [dm6]	A	G	2.476e^-5	0.334	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3293395	X_3293395_SNP [dm3] X_3399362_SNP [dm6]	A	C	2.483e^-5	0.334	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3293399	X_3293399_MNP [dm3] X_3399366_MNP [dm6]	TAA	CTT	2.483e^-5	0.334	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3293404	X_3293404_SNP [dm3] X_3399371_SNP [dm6]	A	G	2.483e^-5	0.334	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3293411	X_3293411_SNP [dm3] X_3399378_SNP [dm6]	G	C	2.483e^-5	0.334	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12336066	2R_12336066_SNP [dm3] 2R_16448561_SNP [dm6]	A	G	2.484e^-5	0.334	INTERGENIC
3L	19572367	3L_19572367_SNP [dm3] 3L_19579267_SNP [dm6]	A	T	2.495e^-5	0.334	INTRON Shal
3L	9288540	3L_9288540_SNP [dm3] 3L_9295440_SNP [dm6]	G	C	2.496e^-5	0.334	INTERGENIC
2L	1677701	2L_1677701_SNP [dm3] 2L_1677701_SNP [dm6]	A	G	2.514e^-5	0.334	INTRON chinmo
X	13187644	X_13187644_SNP [dm3] X_13293611_SNP [dm6]	C	T	2.565e^-5	0.338	SYNONYMOUS_CODING CG15744 DOWNSTREAM CG1764
X	3293428	X_3293428_SNP [dm3] X_3399395_SNP [dm6]	A	T	2.601e^-5	0.341	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2318258	2L_2318258_SNP [dm3] 2L_2318258_SNP [dm6]	T	A	2.667e^-5	0.344	INTRON CG9967 & 1 other
X	11671624	X_11671624_SNP [dm3] X_11777591_SNP [dm6]	G	A	2.679e^-5	0.344	INTRON dy
3R	1782904	3R_1782904_SNP [dm3] 3R_5957182_SNP [dm6]	C	T	2.682e^-5	0.344	INTRON CG34113
3R	2680520	3R_2680520_SNP [dm3] 3R_6854798_SNP [dm6]	G	A	2.702e^-5	0.344	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6913939	3L_6913939_SNP [dm3] 3L_6920839_SNP [dm6]	C	T	2.795e^-5	0.354	INTERGENIC
3L	8316348	3L_8316348_SNP [dm3] 3L_8323248_SNP [dm6]	A	C	2.872e^-5	0.361	DOWNSTREAM CG13670 INTERGENIC
X	3293403	X_3293403_SNP [dm3] X_3399370_SNP [dm6]	T	C	2.935e^-5	0.365	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2680445	3R_2680445_DEL [dm3] 3R_6854723_DEL [dm6]	GG	G	3.025e^-5	0.365	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13980488	3L_13980488_SNP [dm3] 3L_13987388_SNP [dm6]	A	C	3.079e^-5	0.365	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	13980491	3L_13980491_SNP [dm3] 3L_13987391_SNP [dm6]	T	C	3.079e^-5	0.365	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	5637238	3L_5637238_SNP [dm3] 3L_5644138_SNP [dm6]	G	A	3.086e^-5	0.365	UTR_5_PRIME Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13980535	3L_13980535_SNP [dm3] 3L_13987435_SNP [dm6]	T	C	3.088e^-5	0.365	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	4869680	2R_4869680_SNP [dm3] 2R_8982175_SNP [dm6]	C	A	3.095e^-5	0.365	INTRON CG8213
3R	4103702	3R_4103702_SNP [dm3] 3R_8277980_SNP [dm6]	C	T	3.137e^-5	0.365	UPSTREAM ato INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	24300918	3L_24300918_SNP [dm3] 3L_24307818_SNP [dm6]	G	A	3.161e^-5	0.365	INTERGENIC
3R	18052044	3R_18052044_SNP [dm3] 3R_22226322_SNP [dm6]	T	C	3.202e^-5	0.365	INTRON SKIP
2R	20100027	2R_20100027_DEL [dm3] 2R_24212504_DEL [dm6]	TT	T	3.227e^-5	0.365	UTR_3_PRIME CG30419	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	838736	2R_838736_SNP [dm3] 2R_4951231_SNP [dm6]	A	C	3.248e^-5	0.365	INTRON Ir41a	transposable element FlyBase
2L	17201674	2L_17201674_INS [dm3] 2L_17201674_INS [dm6]	T	TT	3.309e^-5	0.365	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
2L	17201677	2L_17201677_DEL [dm3] 2L_17201677_DEL [dm6]	GCCACGCG	A	3.309e^-5	0.365	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3L	20704889	3L_20704889_SNP [dm3] 3L_20711789_SNP [dm6]	T	A	3.331e^-5	0.365	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	20400559	3R_20400559_MNP [dm3] 3R_24574837_MNP [dm6]	TCG	GTT	3.332e^-5	0.365	INTRON CG13624	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22760185	3R_22760185_SNP [dm3] 3R_26934463_SNP [dm6]	A	C	3.375e^-5	0.365	INTRON sda
3R	24068192	3R_24068192_SNP [dm3] 3R_28242470_SNP [dm6]	G	A	3.381e^-5	0.365	INTERGENIC
2L	10483212	2L_10483212_DEL [dm3] 2L_10483212_DEL [dm6]	ACCACAATCA	A	3.419e^-5	0.365	UPSTREAM Grip75 DOWNSTREAM RluA-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	4054988	3R_4054988_SNP [dm3] 3R_8229266_SNP [dm6]	C	T	3.420e^-5	0.365	EXON CR45551 & 1 other	TF binding site mE1_TFBS_sbb
X	3350170	X_3350170_SNP [dm3] X_3456137_SNP [dm6]	T	A	3.421e^-5	0.365	INTRON CR44999
X	12394301	X_12394301_DEL [dm3] X_12500268_DEL [dm6]	AA	A	3.456e^-5	0.365	INTRON CG2556
2L	16000325	2L_16000325_SNP [dm3] 2L_16000325_SNP [dm6]	C	G	3.470e^-5	0.365	UTR_5_PRIME beat-Ic UPSTREAM beat-Ic
2L	2740788	2L_2740788_SNP [dm3] 2L_2740788_SNP [dm6]	G	A	3.483e^-5	0.365	SPLICE_SITE_REGION Hrs UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3918948	X_3918948_SNP [dm3] X_4024915_SNP [dm6]	G	A	3.489e^-5	0.365	INTERGENIC
3R	11930826	3R_11930826_SNP [dm3] 3R_16105104_SNP [dm6]	A	G	3.519e^-5	0.365	UTR_3_PRIME Akt1 DOWNSTREAM Akt1
3L	9135593	3L_9135593_SNP [dm3] 3L_9142493_SNP [dm6]	A	G	3.526e^-5	0.365	DOWNSTREAM nwk INTRON nwk
2R	12600248	2R_12600248_SNP [dm3] 2R_16712743_SNP [dm6]	G	A	3.544e^-5	0.365	INTRON CG30463
2R	6747180	2R_6747180_SNP [dm3] 2R_10859675_SNP [dm6]	T	A	3.551e^-5	0.365	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	15153330	3R_15153330_SNP [dm3] 3R_19327608_SNP [dm6]	T	A	3.580e^-5	0.365	UPSTREAM mir-997 & 1 other INTERGENIC
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	3.582e^-5	0.365	INTERGENIC
2R	7806609	2R_7806609_SNP [dm3] 2R_11919104_SNP [dm6]	T	A	3.605e^-5	0.365	DOWNSTREAM CR44305 INTERGENIC
2R	12320471	2R_12320471_SNP [dm3] 2R_16432966_SNP [dm6]	G	T	3.675e^-5	0.365	DOWNSTREAM CG7848 INTRON CG4398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18665698	2R_18665698_SNP [dm3] 2R_22778193_SNP [dm6]	G	A	3.677e^-5	0.365	INTRON CG42260
X	3347780	X_3347780_SNP [dm3] X_3453747_SNP [dm6]	G	T	3.679e^-5	0.365	INTRON CR44999	TF binding site BDTNP1_TFBS_dl
3R	11909318	3R_11909318_SNP [dm3] 3R_16083596_SNP [dm6]	G	A	3.691e^-5	0.365	UPSTREAM sxe2 & 1 other INTRON Mhcl
X	17396351	X_17396351_SNP [dm3] X_17502318_SNP [dm6]	G	T	3.695e^-5	0.365	INTRON CG43658
2R	12651134	2R_12651134_SNP [dm3] 2R_16763629_SNP [dm6]	A	G	3.721e^-5	0.365	INTRON unc-104
3R	13417743	3R_13417743_SNP [dm3] 3R_17592021_SNP [dm6]	G	A	3.780e^-5	0.365	INTERGENIC
2L	19289931	2L_19289931_SNP [dm3] 2L_19289931_SNP [dm6]	T	A	3.781e^-5	0.365	INTERGENIC
2R	15410059	2R_15410059_SNP [dm3] 2R_19522554_SNP [dm6]	A	T	3.826e^-5	0.365	UTR_3_PRIME sm
3R	26983956	3R_26983956_INS [dm3] 3R_31158234_INS [dm6]	T	TT	3.836e^-5	0.365	SPLICE_SITE_REGION Gycbeta100B UTR_3_PRIME stops INTRON Gycbeta100B	TF binding site mE1_TFBS_chinmo
3R	11921145	3R_11921145_SNP [dm3] 3R_16095423_SNP [dm6]	C	A	3.840e^-5	0.365	INTRON Mhcl
3R	11921149	3R_11921149_SNP [dm3] 3R_16095427_SNP [dm6]	A	G	3.840e^-5	0.365	INTRON Mhcl
3L	18388579	3L_18388579_SNP [dm3] 3L_18395479_SNP [dm6]	A	G	3.848e^-5	0.365	INTERGENIC
3L	18388587	3L_18388587_SNP [dm3] 3L_18395487_SNP [dm6]	A	T	3.848e^-5	0.365	INTERGENIC
3R	21230259	3R_21230259_SNP [dm3] 3R_25404537_SNP [dm6]	G	A	3.858e^-5	0.365	INTRON Fur1
3L	18388590	3L_18388590_SNP [dm3] 3L_18395490_SNP [dm6]	G	A	3.873e^-5	0.365	INTERGENIC
3L	7152237	3L_7152237_INS [dm3] 3L_7159137_INS [dm6]	T	TTTT	3.901e^-5	0.365	DOWNSTREAM Dscam2 & 1 other INTERGENIC
3L	7152249	3L_7152249_SNP [dm3] 3L_7159149_SNP [dm6]	T	C	3.901e^-5	0.365	DOWNSTREAM Dscam2 & 1 other INTERGENIC
3L	7152250	3L_7152250_SNP [dm3] 3L_7159150_SNP [dm6]	T	C	3.901e^-5	0.365	DOWNSTREAM Dscam2 & 1 other INTERGENIC
3R	3807753	3R_3807753_SNP [dm3] 3R_7982031_SNP [dm6]	C	A	3.958e^-5	0.366	UTR_3_PRIME CG2781	TF binding site mE1_TFBS_bab1
2L	16608283	2L_16608283_SNP [dm3] 2L_16608283_SNP [dm6]	A	G	4.018e^-5	0.366	NON_SYNONYMOUS_CODING CG4631 DOWNSTREAM CG31815 INTRON CG42389	TF binding site mE1_TFBS_sens
2L	17340595	2L_17340595_SNP [dm3] 2L_17340595_SNP [dm6]	T	C	4.029e^-5	0.366	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13286793	2R_13286793_SNP [dm3] 2R_17399288_SNP [dm6]	A	G	4.037e^-5	0.366	INTRON Sip1
2R	13286794	2R_13286794_SNP [dm3] 2R_17399289_SNP [dm6]	G	A	4.037e^-5	0.366	INTRON Sip1
2R	13286799	2R_13286799_SNP [dm3] 2R_17399294_SNP [dm6]	A	G	4.037e^-5	0.366	INTRON Sip1
3R	18625116	3R_18625116_SNP [dm3] 3R_22799394_SNP [dm6]	T	G	4.120e^-5	0.366	INTERGENIC
3R	24958115	3R_24958115_SNP [dm3] 3R_29132393_SNP [dm6]	G	A	4.236e^-5	0.366	SYNONYMOUS_CODING Vha100-1
X	13253187	X_13253187_SNP [dm3] X_13359154_SNP [dm6]	T	G	4.236e^-5	0.366	UPSTREAM Syt12 INTERGENIC
3L	8748155	3L_8748155_DEL [dm3] 3L_8755055_DEL [dm6]	TTATGGCAGATTCAT...	T	4.255e^-5	0.366	UPSTREAM CG6576 INTRON Fhos
X	20289545	X_20289545_SNP [dm3] X_20418518_SNP [dm6]	C	A	4.364e^-5	0.366	NON_SYNONYMOUS_CODING Obp19c DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11847255	2R_11847255_SNP [dm3] 2R_15959750_SNP [dm6]	G	A	4.372e^-5	0.366	INTRON Strn-Mlck
X	13187368	X_13187368_SNP [dm3] X_13293335_SNP [dm6]	G	T	4.373e^-5	0.366	SYNONYMOUS_CODING CG15744
2L	16092000	2L_16092000_SNP [dm3] 2L_16092000_SNP [dm6]	G	T	4.386e^-5	0.366	INTERGENIC
X	3350042	X_3350042_INS [dm3] X_3456009_INS [dm6]	A	AAAGTCGCATA...	4.430e^-5	0.366	INTRON CR44999
2L	8084353	2L_8084353_SNP [dm3] 2L_8084353_SNP [dm6]	T	G	4.436e^-5	0.366	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13720290	2L_13720290_SNP [dm3] 2L_13720290_SNP [dm6]	G	A	4.471e^-5	0.366	INTERGENIC
2L	4965137	2L_4965137_SNP [dm3] 2L_4965137_SNP [dm6]	G	C	4.484e^-5	0.366	SYNONYMOUS_CODING CG34124 UPSTREAM CG34125 EXON CR43824	TF binding site mE1_TFBS_cad
3L	6366104	3L_6366104_SNP [dm3] 3L_6373004_SNP [dm6]	G	A	4.484e^-5	0.366	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6366172	3L_6366172_SNP [dm3] 3L_6373072_SNP [dm6]	G	C	4.484e^-5	0.366	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	4.484e^-5	0.366	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9180050	3L_9180050_SNP [dm3] 3L_9186950_SNP [dm6]	C	T	4.484e^-5	0.366	INTERGENIC
3R	24958518	3R_24958518_SNP [dm3] 3R_29132796_SNP [dm6]	C	A	4.488e^-5	0.366	INTRON Vha100-1
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	4.493e^-5	0.366	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
2R	4521255	2R_4521255_SNP [dm3] 2R_8633750_SNP [dm6]	T	C	4.498e^-5	0.366	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12884193	2R_12884193_SNP [dm3] 2R_16996688_SNP [dm6]	C	A	4.499e^-5	0.366	SYNONYMOUS_CODING CG30461 UTR_5_PRIME CG30461 UTR_3_PRIME ste24c DOWNSTREAM ste24c & 1 other
2R	12884246	2R_12884246_SNP [dm3] 2R_16996741_SNP [dm6]	G	C	4.499e^-5	0.366	NON_SYNONYMOUS_CODING CG30461 UTR_3_PRIME ste24c DOWNSTREAM ste24c & 1 other INTRON ste24c & 1 other
2L	1057988	2L_1057988_SNP [dm3] 2L_1057988_SNP [dm6]	G	A	4.499e^-5	0.366	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	16933964	2L_16933964_SNP [dm3] 2L_16933964_SNP [dm6]	T	C	4.500e^-5	0.366	INTERGENIC
2L	2867114	2L_2867114_SNP [dm3] 2L_2867114_SNP [dm6]	A	T	4.548e^-5	0.366	SYNONYMOUS_CODING CG2991
3R	15391834	3R_15391834_SNP [dm3] 3R_19566112_SNP [dm6]	T	A	4.584e^-5	0.366	INTRON Dys
3R	2680363	3R_2680363_SNP [dm3] 3R_6854641_SNP [dm6]	G	T	4.597e^-5	0.366	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	17685255	2L_17685255_SNP [dm3] 2L_17685255_SNP [dm6]	A	G	4.615e^-5	0.366	INTRON CadN
X	20761812	X_20761812_SNP [dm3] X_20890785_SNP [dm6]	T	A	4.624e^-5	0.366	INTRON shakB
2L	6319505	2L_6319505_SNP [dm3] 2L_6319505_SNP [dm6]	G	A	4.648e^-5	0.366	INTRON Ddr
X	16159707	X_16159707_SNP [dm3] X_16265674_SNP [dm6]	C	T	4.678e^-5	0.366	SYNONYMOUS_CODING CG12507
X	19229687	X_19229687_SNP [dm3] X_19335654_SNP [dm6]	G	C	4.685e^-5	0.366	INTRON nAChRalpha7
3L	7152252	3L_7152252_DEL [dm3] 3L_7159152_DEL [dm6]	AC	A	4.738e^-5	0.366	DOWNSTREAM Dscam2 & 1 other INTERGENIC
X	17259855	X_17259855_SNP [dm3] X_17365822_SNP [dm6]	C	T	4.740e^-5	0.366	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	21425125	X_21425125_DEL [dm3] X_21554098_DEL [dm6]	CAAT	C	4.747e^-5	0.366	INTERGENIC	transposable element FlyBase
2R	12584774	2R_12584774_SNP [dm3] 2R_16697269_SNP [dm6]	C	G	4.810e^-5	0.366	INTRON CG30463
2R	9508616	2R_9508616_SNP [dm3] 2R_13621111_SNP [dm6]	C	T	4.817e^-5	0.366	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	492623	2L_492623_SNP [dm3] 2L_492623_SNP [dm6]	A	T	4.822e^-5	0.366	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26812241	3R_26812241_SNP [dm3] 3R_30986519_SNP [dm6]	C	T	4.831e^-5	0.366	INTRON 5-HT7
3R	15262594	3R_15262594_SNP [dm3] 3R_19436872_SNP [dm6]	A	C	4.841e^-5	0.366	INTRON CG31221
X	3348744	X_3348744_SNP [dm3] X_3454711_SNP [dm6]	A	T	4.847e^-5	0.366	INTRON CR44999
2R	12651208	2R_12651208_SNP [dm3] 2R_16763703_SNP [dm6]	C	T	4.860e^-5	0.366	INTRON unc-104
X	17199664	X_17199664_SNP [dm3] X_17305631_SNP [dm6]	T	A	4.864e^-5	0.366	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
2R	15086580	2R_15086580_SNP [dm3] 2R_19199075_SNP [dm6]	G	A	4.956e^-5	0.37	INTRON hppy
2R	11420099	2R_11420099_SNP [dm3] 2R_15532594_SNP [dm6]	C	A	4.973e^-5	0.37	UPSTREAM Khc-73 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18665524	2R_18665524_SNP [dm3] 2R_22778019_SNP [dm6]	C	T	4.987e^-5	0.37	INTRON CG42260
2R	18665536	2R_18665536_SNP [dm3] 2R_22778031_SNP [dm6]	T	C	4.987e^-5	0.37	INTRON CG42260
3R	13417752	3R_13417752_SNP [dm3] 3R_17592030_SNP [dm6]	T	C	5.036e^-5	0.372	INTERGENIC
3R	25608249	3R_25608249_SNP [dm3] 3R_29782527_SNP [dm6]	T	G	5.083e^-5	0.372	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2740822	2L_2740822_SNP [dm3] 2L_2740822_SNP [dm6]	T	A	5.111e^-5	0.372	UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11912880	3R_11912880_SNP [dm3] 3R_16087158_SNP [dm6]	T	A	5.121e^-5	0.372	UTR_3_PRIME sxe2 INTRON Mhcl	TF binding site mE1_TFBS_cad
2R	7206103	2R_7206103_SNP [dm3] 2R_11318598_SNP [dm6]	T	A	5.146e^-5	0.372	UTR_5_PRIME nompA UPSTREAM nompA
2R	12653510	2R_12653510_SNP [dm3] 2R_16766005_SNP [dm6]	T	C	5.147e^-5	0.372	UPSTREAM CG5348 & 2 others INTRON unc-104
3L	4443511	3L_4443511_SNP [dm3] 3L_4443511_SNP [dm6]	C	T	5.174e^-5	0.372	INTERGENIC
3L	9182871	3L_9182871_SNP [dm3] 3L_9189771_SNP [dm6]	A	G	5.195e^-5	0.372	INTERGENIC
X	7263740	X_7263740_SNP [dm3] X_7369707_SNP [dm6]	C	A	5.222e^-5	0.372	INTRON CG1677 & 1 other
2L	9572262	2L_9572262_SNP [dm3] 2L_9572262_SNP [dm6]	T	C	5.253e^-5	0.372	NON_SYNONYMOUS_CODING CG3838
3R	11000946	3R_11000946_SNP [dm3] 3R_15175224_SNP [dm6]	A	C	5.257e^-5	0.372	DOWNSTREAM Mf INTRON Mf & 1 other
2R	15869375	2R_15869375_SNP [dm3] 2R_19981870_SNP [dm6]	T	C	5.261e^-5	0.372	UPSTREAM CG8654 INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	721488	2L_721488_SNP [dm3] 2L_721488_SNP [dm6]	A	T	5.299e^-5	0.372	INTERGENIC
3L	19221092	3L_19221092_SNP [dm3] 3L_19227992_SNP [dm6]	A	G	5.304e^-5	0.372	INTRON fz2
3R	21655322	3R_21655322_SNP [dm3] 3R_25829600_SNP [dm6]	C	T	5.330e^-5	0.373	NON_SYNONYMOUS_CODING Mst57Dc DOWNSTREAM Sfp96F
3L	19774332	3L_19774332_INS [dm3] 3L_19781232_INS [dm6]	A	AA	5.440e^-5	0.377	INTRON CG42637 & 1 other
3L	4443445	3L_4443445_SNP [dm3] 3L_4443445_SNP [dm6]	G	A	5.442e^-5	0.377	INTERGENIC
3L	15737389	3L_15737389_SNP [dm3] 3L_15744289_SNP [dm6]	G	A	5.447e^-5	0.377	INTERGENIC
2L	15066153	2L_15066153_SNP [dm3] 2L_15066153_SNP [dm6]	T	C	5.466e^-5	0.377	INTRON vas & 1 other
2L	7263573	2L_7263573_SNP [dm3] 2L_7263573_SNP [dm6]	A	G	5.488e^-5	0.377	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18665538	2R_18665538_SNP [dm3] 2R_22778033_SNP [dm6]	T	A	5.512e^-5	0.377	INTRON CG42260
3L	7152220	3L_7152220_SNP [dm3] 3L_7159120_SNP [dm6]	G	T	5.577e^-5	0.38	DOWNSTREAM Dscam2 & 1 other INTERGENIC
3R	20304817	3R_20304817_SNP [dm3] 3R_24479095_SNP [dm6]	C	T	5.590e^-5	0.38	INTERGENIC
3L	6365736	3L_6365736_SNP [dm3] 3L_6372636_SNP [dm6]	T	A	5.617e^-5	0.38	INTERGENIC
2R	11617082	2R_11617082_SNP [dm3] 2R_15729577_SNP [dm6]	G	A	5.695e^-5	0.383	INTRON CG30089
X	6331506	X_6331506_SNP [dm3] X_6437473_SNP [dm6]	T	G	5.722e^-5	0.383	INTRON CG42340
X	3543514	X_3543514_SNP [dm3] X_3649481_SNP [dm6]	G	T	5.772e^-5	0.383	INTRON AstA-R1
3R	11921508	3R_11921508_SNP [dm3] 3R_16095786_SNP [dm6]	G	A	5.772e^-5	0.383	INTRON Mhcl
2L	20036146	2L_20036146_SNP [dm3] 2L_20036146_SNP [dm6]	C	T	5.772e^-5	0.383	INTRON sNPF
3R	13417758	3R_13417758_SNP [dm3] 3R_17592036_SNP [dm6]	T	A	5.824e^-5	0.383	INTERGENIC
3L	12751588	3L_12751588_SNP [dm3] 3L_12758488_SNP [dm6]	A	C	5.834e^-5	0.383	INTRON CG32113	TF binding site mE1_TFBS_inv
3L	18915709	3L_18915709_SNP [dm3] 3L_18922609_SNP [dm6]	T	C	5.889e^-5	0.383	UTR_3_PRIME CG32204 UPSTREAM CG3819
2R	4254263	2R_4254263_SNP [dm3] 2R_8366758_SNP [dm6]	T	C	5.899e^-5	0.383	UPSTREAM boly DOWNSTREAM CG18449 INTRON pdm3
3L	5422589	3L_5422589_SNP [dm3] 3L_5429489_SNP [dm6]	A	T	5.900e^-5	0.383	UTR_5_PRIME CG34391
2R	15016635	2R_15016635_SNP [dm3] 2R_19129130_SNP [dm6]	T	C	5.927e^-5	0.383	START_GAINED CG15117 UTR_5_PRIME CG15117 UPSTREAM botv	TF binding site BDTNP1_TFBS_Med
3R	4155013	3R_4155013_SNP [dm3] 3R_8329291_SNP [dm6]	C	A	5.946e^-5	0.383	INTRON Poxm
3R	23921478	3R_23921478_SNP [dm3] 3R_28095756_SNP [dm6]	C	T	6.019e^-5	0.383	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7975588	2L_7975588_SNP [dm3] 2L_7975588_SNP [dm6]	G	T	6.037e^-5	0.383	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12584785	2R_12584785_SNP [dm3] 2R_16697280_SNP [dm6]	T	C	6.050e^-5	0.383	INTRON CG30463
3L	10338515	3L_10338515_SNP [dm3] 3L_10345415_SNP [dm6]	T	A	6.051e^-5	0.383	INTERGENIC
3L	10338599	3L_10338599_SNP [dm3] 3L_10345499_SNP [dm6]	A	C	6.051e^-5	0.383	INTERGENIC
3L	10338608	3L_10338608_SNP [dm3] 3L_10345508_SNP [dm6]	A	C	6.051e^-5	0.383	INTERGENIC
3L	7149669	3L_7149669_SNP [dm3] 3L_7156569_SNP [dm6]	A	G	6.057e^-5	0.383	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4869706	2R_4869706_SNP [dm3] 2R_8982201_SNP [dm6]	C	G	6.069e^-5	0.383	INTRON CG8213
2R	5646719	2R_5646719_INS [dm3] 2R_9759214_INS [dm6]	A	AACA	6.103e^-5	0.383	INTRON trpl
3L	19221110	3L_19221110_SNP [dm3] 3L_19228010_SNP [dm6]	C	T	6.171e^-5	0.383	INTRON fz2
3R	11920465	3R_11920465_DEL [dm3] 3R_16094743_DEL [dm6]	AGAGGCAA	A	6.208e^-5	0.383	UPSTREAM Mhcl INTRON Mhcl
3R	11921063	3R_11921063_SNP [dm3] 3R_16095341_SNP [dm6]	T	A	6.208e^-5	0.383	INTRON Mhcl
3R	11921091	3R_11921091_SNP [dm3] 3R_16095369_SNP [dm6]	C	A	6.208e^-5	0.383	INTRON Mhcl
3R	23847523	3R_23847523_SNP [dm3] 3R_28021801_SNP [dm6]	G	C	6.209e^-5	0.383	INTERGENIC
3R	24958037	3R_24958037_SNP [dm3] 3R_29132315_SNP [dm6]	A	G	6.220e^-5	0.383	INTRON Vha100-1
X	17200189	X_17200189_SNP [dm3] X_17306156_SNP [dm6]	T	A	6.286e^-5	0.383	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
3L	13981041	3L_13981041_SNP [dm3] 3L_13987941_SNP [dm6]	G	A	6.286e^-5	0.383	UTR_5_PRIME CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	11609544	2R_11609544_SNP [dm3] 2R_15722039_SNP [dm6]	G	T	6.287e^-5	0.383	INTERGENIC
2R	6360685	2R_6360685_SNP [dm3] 2R_10473180_SNP [dm6]	G	A	6.326e^-5	0.384	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_sens
2R	19128471	2R_19128471_SNP [dm3] 2R_23240948_SNP [dm6]	T	C	6.338e^-5	0.384	INTERGENIC
3L	13980464	3L_13980464_SNP [dm3] 3L_13987364_SNP [dm6]	G	A	6.367e^-5	0.384	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	6024899	2R_6024899_SNP [dm3] 2R_10137394_SNP [dm6]	T	G	6.389e^-5	0.384	UTR_3_PRIME gem UPSTREAM CG12917
2R	4869694	2R_4869694_SNP [dm3] 2R_8982189_SNP [dm6]	T	C	6.390e^-5	0.384	INTRON CG8213
3L	18380590	3L_18380590_SNP [dm3] 3L_18387490_SNP [dm6]	A	C	6.439e^-5	0.385	INTERGENIC
3R	26588495	3R_26588495_INS [dm3] 3R_30762773_INS [dm6]	ATTA	TCGAC	6.475e^-5	0.386	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	12742582	3L_12742582_SNP [dm3] 3L_12749482_SNP [dm6]	C	A	6.502e^-5	0.386	UPSTREAM Klc & 1 other INTRON Klc
3L	12622828	3L_12622828_SNP [dm3] 3L_12629728_SNP [dm6]	A	G	6.537e^-5	0.387	INTRON CR32111
2R	11420101	2R_11420101_SNP [dm3] 2R_15532596_SNP [dm6]	A	T	6.613e^-5	0.39	UPSTREAM Khc-73 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12484534	2R_12484534_SNP [dm3] 2R_16597029_SNP [dm6]	A	T	6.628e^-5	0.39	INTRON CG8303
2R	12417564	2R_12417564_SNP [dm3] 2R_16530059_SNP [dm6]	C	G	6.659e^-5	0.391	INTRON Sema-2a
X	11671513	X_11671513_SNP [dm3] X_11777480_SNP [dm6]	C	T	6.682e^-5	0.391	INTRON dy	TF binding site mE1_TFBS_Trl
X	3349669	X_3349669_SNP [dm3] X_3455636_SNP [dm6]	A	T	6.707e^-5	0.391	INTRON CR44999
X	3348203	X_3348203_SNP [dm3] X_3454170_SNP [dm6]	A	T	6.736e^-5	0.391	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19221081	3L_19221081_SNP [dm3] 3L_19227981_SNP [dm6]	A	T	6.740e^-5	0.391	INTRON fz2
X	17199763	X_17199763_SNP [dm3] X_17305730_SNP [dm6]	G	A	6.798e^-5	0.391	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
3R	13417763	3R_13417763_SNP [dm3] 3R_17592041_SNP [dm6]	A	T	6.814e^-5	0.391	INTERGENIC
3L	11448549	3L_11448549_SNP [dm3] 3L_11455449_SNP [dm6]	C	T	6.853e^-5	0.391	INTERGENIC
3L	10338607	3L_10338607_SNP [dm3] 3L_10345507_SNP [dm6]	A	G	6.863e^-5	0.391	INTERGENIC
X	18372881	X_18372881_SNP [dm3] X_18478848_SNP [dm6]	G	T	6.877e^-5	0.391	INTRON CG32547
3L	24281447	3L_24281447_SNP [dm3] 3L_24288347_SNP [dm6]	T	C	6.893e^-5	0.391	INTRON Snap25
2L	2742185	2L_2742185_SNP [dm3] 2L_2742185_SNP [dm6]	T	C	6.897e^-5	0.391	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4347817	2L_4347817_SNP [dm3] 2L_4347817_SNP [dm6]	C	T	6.914e^-5	0.391	UPSTREAM CR44698 INTRON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23471544	3R_23471544_SNP [dm3] 3R_27645822_SNP [dm6]	A	T	6.953e^-5	0.392	INTRON tau	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	6277130	3L_6277130_DEL [dm3] 3L_6284030_DEL [dm6]	AGCTTAGCA	A	7.028e^-5	0.394	INTERGENIC
2R	7806620	2R_7806620_SNP [dm3] 2R_11919115_SNP [dm6]	T	G	7.064e^-5	0.394	DOWNSTREAM CR44305 INTERGENIC
2R	7806638	2R_7806638_SNP [dm3] 2R_11919133_SNP [dm6]	T	A	7.064e^-5	0.394	DOWNSTREAM CR44305 INTERGENIC
3R	24288266	3R_24288266_SNP [dm3] 3R_28462544_SNP [dm6]	A	G	7.085e^-5	0.394	INTRON beat-VI
2L	10788500	2L_10788500_DEL [dm3] 2L_10788500_DEL [dm6]	TT	T	7.113e^-5	0.394	INTRON CG31869
2L	14365808	2L_14365808_SNP [dm3] 2L_14365808_SNP [dm6]	C	T	7.126e^-5	0.394	UTR_3_PRIME spel1 DOWNSTREAM spel1
3L	10330692	3L_10330692_SNP [dm3] 3L_10337592_SNP [dm6]	C	T	7.144e^-5	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14904292	2R_14904292_SNP [dm3] 2R_19016787_SNP [dm6]	C	T	7.223e^-5	0.398	INTERGENIC
3R	26406199	3R_26406199_SNP [dm3] 3R_30580477_SNP [dm6]	A	T	7.250e^-5	0.398	SYNONYMOUS_CODING CG9702
3L	24291897	3L_24291897_SNP [dm3] 3L_24298797_SNP [dm6]	T	A	7.276e^-5	0.398	UTR_3_PRIME Snap25
3R	20402739	3R_20402739_INS [dm3] 3R_24577017_INS [dm6]	C	CATTGGC	7.364e^-5	0.402	INTRON CG13624
2L	17341708	2L_17341708_SNP [dm3] 2L_17341708_SNP [dm6]	A	G	7.442e^-5	0.403	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14757045	3L_14757045_SNP [dm3] 3L_14763945_SNP [dm6]	C	T	7.454e^-5	0.403	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
3L	419909	3L_419909_SNP [dm3] 3L_419909_SNP [dm6]	G	A	7.470e^-5	0.403	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	426506	3L_426506_SNP [dm3] 3L_426506_SNP [dm6]	C	G	7.470e^-5	0.403	INTERGENIC
3L	13981279	3L_13981279_SNP [dm3] 3L_13988179_SNP [dm6]	A	T	7.529e^-5	0.405	NON_SYNONYMOUS_CODING CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	12725042	3L_12725042_DEL [dm3] 3L_12731942_DEL [dm6]	ATGTCCAAGTA...	A	7.587e^-5	0.405	INTERGENIC
3R	20584950	3R_20584950_SNP [dm3] 3R_24759228_SNP [dm6]	G	A	7.601e^-5	0.405	NON_SYNONYMOUS_CODING asp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18388158	3L_18388158_SNP [dm3] 3L_18395058_SNP [dm6]	T	G	7.687e^-5	0.405	INTERGENIC
3L	19769343	3L_19769343_SNP [dm3] 3L_19776243_SNP [dm6]	C	G	7.691e^-5	0.405	INTRON CG42637 & 1 other
3L	19770076	3L_19770076_SNP [dm3] 3L_19776976_SNP [dm6]	G	C	7.691e^-5	0.405	INTRON CG42637 & 1 other
X	3908154	X_3908154_INS [dm3] X_4014121_INS [dm6]	C	CCAC	7.726e^-5	0.405	INTERGENIC
2L	4347779	2L_4347779_SNP [dm3] 2L_4347779_SNP [dm6]	A	T	7.728e^-5	0.405	SPLICE_SITE_REGION CR44697 UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4347783	2L_4347783_SNP [dm3] 2L_4347783_SNP [dm6]	A	G	7.728e^-5	0.405	UPSTREAM CR44698 INTRON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14753541	X_14753541_SNP [dm3] X_14859508_SNP [dm6]	T	G	7.734e^-5	0.405	INTRON Flo2
3L	24287836	3L_24287836_SNP [dm3] 3L_24294736_SNP [dm6]	T	C	7.770e^-5	0.406	INTRON Snap25
2R	12721538	2R_12721538_DEL [dm3] 2R_16834033_DEL [dm6]	CGATAATGTCACGTTCACAC...	C	7.793e^-5	0.406	EXON CR43650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	24282884	3L_24282884_SNP [dm3] 3L_24289784_SNP [dm6]	A	T	7.812e^-5	0.406	DOWNSTREAM CR45159 INTRON Snap25
2R	17623729	2R_17623729_SNP [dm3] 2R_21736224_SNP [dm6]	G	T	7.896e^-5	0.409	INTERGENIC
3R	2876491	3R_2876491_SNP [dm3] 3R_7050769_SNP [dm6]	C	T	7.982e^-5	0.41	INTERGENIC
3R	18625249	3R_18625249_SNP [dm3] 3R_22799527_SNP [dm6]	A	G	8.029e^-5	0.41	INTERGENIC
3R	22617459	3R_22617459_SNP [dm3] 3R_26791737_SNP [dm6]	A	C	8.035e^-5	0.41	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17180061	X_17180061_SNP [dm3] X_17286028_SNP [dm6]	T	G	8.057e^-5	0.41	UTR_3_PRIME Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7818505	2R_7818505_SNP [dm3] 2R_11931000_SNP [dm6]	A	T	8.101e^-5	0.41	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	13868106	X_13868106_SNP [dm3] X_13974073_SNP [dm6]	T	A	8.119e^-5	0.41	INTRON mamo
X	14750522	X_14750522_SNP [dm3] X_14856489_SNP [dm6]	G	A	8.161e^-5	0.41	UPSTREAM CG9519 INTRON Flo2
X	14750570	X_14750570_SNP [dm3] X_14856537_SNP [dm6]	A	T	8.161e^-5	0.41	UPSTREAM CG9519 INTRON Flo2
X	14750679	X_14750679_SNP [dm3] X_14856646_SNP [dm6]	T	C	8.161e^-5	0.41	UPSTREAM CG9519 INTRON Flo2
2R	14785675	2R_14785675_DEL [dm3] 2R_18898170_DEL [dm6]	AC	A	8.180e^-5	0.41	INTRON sano
3R	14038616	3R_14038616_SNP [dm3] 3R_18212894_SNP [dm6]	G	A	8.286e^-5	0.41	SYNONYMOUS_CODING CG7985
3R	18491183	3R_18491183_SNP [dm3] 3R_22665461_SNP [dm6]	A	G	8.319e^-5	0.41	INTRON CG45058
2R	9736058	2R_9736058_SNP [dm3] 2R_13848553_SNP [dm6]	C	A	8.351e^-5	0.41	SYNONYMOUS_CODING CG30484
3R	14283901	3R_14283901_DEL [dm3] 3R_18458179_DEL [dm6]	GTTAT	G	8.362e^-5	0.41	INTRON fru
2R	8583603	2R_8583603_SNP [dm3] 2R_12696098_SNP [dm6]	G	C	8.366e^-5	0.41	INTERGENIC
X	6331512	X_6331512_SNP [dm3] X_6437479_SNP [dm6]	C	T	8.401e^-5	0.41	INTRON CG42340
X	6331516	X_6331516_SNP [dm3] X_6437483_SNP [dm6]	T	A	8.401e^-5	0.41	INTRON CG42340
2R	12177933	2R_12177933_SNP [dm3] 2R_16290428_SNP [dm6]	T	C	8.438e^-5	0.41	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12177936	2R_12177936_SNP [dm3] 2R_16290431_SNP [dm6]	C	T	8.438e^-5	0.41	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	402373	3L_402373_SNP [dm3] 3L_402373_SNP [dm6]	A	T	8.451e^-5	0.41	INTERGENIC
3L	402489	3L_402489_SNP [dm3] 3L_402489_SNP [dm6]	C	G	8.451e^-5	0.41	INTERGENIC
3L	402540	3L_402540_DEL [dm3] 3L_402540_DEL [dm6]	CC	C	8.451e^-5	0.41	INTERGENIC
3L	402544	3L_402544_SNP [dm3] 3L_402544_SNP [dm6]	A	G	8.451e^-5	0.41	INTERGENIC
3L	410199	3L_410199_DEL [dm3] 3L_410199_DEL [dm6]	TATGCGTTGTCGCTTT...	AAAA	8.451e^-5	0.41	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13527398	2R_13527398_SNP [dm3] 2R_17639893_SNP [dm6]	G	A	8.520e^-5	0.41	UPSTREAM CG10936 INTERGENIC	insulator Insulator_Class_I.mE01
2R	13527399	2R_13527399_SNP [dm3] 2R_17639894_SNP [dm6]	A	T	8.520e^-5	0.41	UPSTREAM CG10936 INTERGENIC	insulator Insulator_Class_I.mE01
X	17258269	X_17258269_SNP [dm3] X_17364236_SNP [dm6]	A	C	8.530e^-5	0.41	INTERGENIC
3L	13980661	3L_13980661_SNP [dm3] 3L_13987561_SNP [dm6]	G	A	8.552e^-5	0.41	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2L	14964186	2L_14964186_SNP [dm3] 2L_14964186_SNP [dm6]	G	T	8.577e^-5	0.41	INTRON CG42313
3L	16306924	3L_16306924_SNP [dm3] 3L_16313824_SNP [dm6]	A	C	8.581e^-5	0.41	UPSTREAM CG13062 INTERGENIC
3R	17260568	3R_17260568_SNP [dm3] 3R_21434846_SNP [dm6]	C	A	8.658e^-5	0.413	UPSTREAM lbl INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3758854	3L_3758854_SNP [dm3] 3L_3758854_SNP [dm6]	G	T	8.692e^-5	0.413	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
3L	13980429	3L_13980429_SNP [dm3] 3L_13987329_SNP [dm6]	G	T	8.703e^-5	0.413	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	11553549	3L_11553549_SNP [dm3] 3L_11560449_SNP [dm6]	T	A	8.748e^-5	0.414	INTRON Mob2
3R	24289705	3R_24289705_SNP [dm3] 3R_28463983_SNP [dm6]	C	T	8.816e^-5	0.415	INTRON beat-VI
3L	11309031	3L_11309031_SNP [dm3] 3L_11315931_SNP [dm6]	T	G	8.829e^-5	0.415	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2R	9692780	2R_9692780_SNP [dm3] 2R_13805275_SNP [dm6]	T	A	8.832e^-5	0.415	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
X	3348105	X_3348105_SNP [dm3] X_3454072_SNP [dm6]	A	T	8.850e^-5	0.415	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24757076	3R_24757076_SNP [dm3] 3R_28931354_SNP [dm6]	G	A	8.882e^-5	0.415	INTRON CG14521
2L	14959075	2L_14959075_SNP [dm3] 2L_14959075_SNP [dm6]	C	T	8.896e^-5	0.415	INTRON CG42313
2R	12738215	2R_12738215_SNP [dm3] 2R_16850710_SNP [dm6]	T	C	8.963e^-5	0.417	SPLICE_SITE_REGION IntS8 DOWNSTREAM CR44467 INTRON IntS8	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7818080	2R_7818080_SNP [dm3] 2R_11930575_SNP [dm6]	C	G	9.038e^-5	0.417	UPSTREAM CR44312 INTERGENIC
2L	16651680	2L_16651680_SNP [dm3] 2L_16651680_SNP [dm6]	C	G	9.043e^-5	0.417	INTRON CG42389
3L	13980649	3L_13980649_SNP [dm3] 3L_13987549_SNP [dm6]	G	C	9.068e^-5	0.417	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2L	1784009	2L_1784009_SNP [dm3] 2L_1784009_SNP [dm6]	C	T	9.082e^-5	0.417	UPSTREAM Gr22e INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	15694043	2R_15694043_SNP [dm3] 2R_19806538_SNP [dm6]	T	C	9.111e^-5	0.417	INTERGENIC
2L	16378839	2L_16378839_SNP [dm3] 2L_16378839_SNP [dm6]	G	A	9.128e^-5	0.417	INTERGENIC
3R	18626898	3R_18626898_SNP [dm3] 3R_22801176_SNP [dm6]	C	T	9.137e^-5	0.417	INTERGENIC
2L	9833110	2L_9833110_SNP [dm3] 2L_9833110_SNP [dm6]	A	G	9.151e^-5	0.417	INTRON nAChRalpha6
3L	19773827	3L_19773827_SNP [dm3] 3L_19780727_SNP [dm6]	C	T	9.201e^-5	0.417	INTRON CG42637 & 1 other
3L	7152067	3L_7152067_SNP [dm3] 3L_7158967_SNP [dm6]	G	C	9.206e^-5	0.417	DOWNSTREAM Dscam2 & 1 other INTERGENIC
2L	2319801	2L_2319801_SNP [dm3] 2L_2319801_SNP [dm6]	C	T	9.211e^-5	0.417	INTRON CG9967 & 1 other
X	12395031	X_12395031_SNP [dm3] X_12500998_SNP [dm6]	A	C	9.246e^-5	0.417	INTRON CG2556
3R	2856109	3R_2856109_SNP [dm3] 3R_7030387_SNP [dm6]	T	C	9.284e^-5	0.417	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18852615	3R_18852615_SNP [dm3] 3R_23026893_SNP [dm6]	G	C	9.301e^-5	0.417	UPSTREAM lmd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	24280621	3L_24280621_SNP [dm3] 3L_24287521_SNP [dm6]	C	A	9.305e^-5	0.417	INTRON Snap25
X	8840742	X_8840742_SNP [dm3] X_8946709_SNP [dm6]	A	G	9.396e^-5	0.42	INTRON rdgA
X	7466270	X_7466270_SNP [dm3] X_7572237_SNP [dm6]	A	C	9.420e^-5	0.42	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	13286809	2R_13286809_SNP [dm3] 2R_17399304_SNP [dm6]	T	C	9.487e^-5	0.421	INTRON Sip1
3R	26172890	3R_26172890_SNP [dm3] 3R_30347168_SNP [dm6]	A	G	9.509e^-5	0.421	INTRON hdc
3L	11017115	3L_11017115_SNP [dm3] 3L_11024015_SNP [dm6]	C	A	9.613e^-5	0.421	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11911398	3R_11911398_SNP [dm3] 3R_16085676_SNP [dm6]	T	C	9.650e^-5	0.421	UTR_5_PRIME sxe2 INTRON Mhcl & 1 other	TF binding site mE1_TFBS_cad
3R	11917010	3R_11917010_SNP [dm3] 3R_16091288_SNP [dm6]	T	C	9.650e^-5	0.421	INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11918430	3R_11918430_SNP [dm3] 3R_16092708_SNP [dm6]	G	A	9.650e^-5	0.421	INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	11918563	3R_11918563_SNP [dm3] 3R_16092841_SNP [dm6]	G	A	9.650e^-5	0.421	INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	11987040	2R_11987040_SNP [dm3] 2R_16099535_SNP [dm6]	C	T	9.652e^-5	0.421	SYNONYMOUS_CODING CG8414 UPSTREAM Dg DOWNSTREAM mRpL34	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	20761740	X_20761740_SNP [dm3] X_20890713_SNP [dm6]	T	C	9.659e^-5	0.421	INTRON shakB
3L	4443521	3L_4443521_SNP [dm3] 3L_4443521_SNP [dm6]	A	G	9.659e^-5	0.421	INTERGENIC
3R	11000918	3R_11000918_SNP [dm3] 3R_15175196_SNP [dm6]	C	G	9.687e^-5	0.421	DOWNSTREAM Mf INTRON Mf & 1 other
3L	10707575	3L_10707575_SNP [dm3] 3L_10714475_SNP [dm6]	A	G	9.710e^-5	0.421	INTERGENIC
X	1160134	X_1160134_SNP [dm3] X_1266101_SNP [dm6]	G	C	9.796e^-5	0.424	INTRON Atf3
2R	7818042	2R_7818042_SNP [dm3] 2R_11930537_SNP [dm6]	T	A	9.837e^-5	0.425	UPSTREAM CR44312 INTERGENIC
2L	17709241	2L_17709241_SNP [dm3] 2L_17709241_SNP [dm6]	T	C	9.911e^-5	0.426	INTRON CadN
2L	20037161	2L_20037161_SNP [dm3] 2L_20037161_SNP [dm6]	A	G	9.922e^-5	0.426	INTRON sNPF
2R	12022341	2R_12022341_SNP [dm3] 2R_16134836_SNP [dm6]	C	T	9.983e^-5	0.428	INTRON spin
X	2519278	X_2519278_SNP [dm3] X_2625245_SNP [dm6]	A	G	1.005e^-4	0.43	UPSTREAM brv3 INTRON PI4KIIIalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	419910	3L_419910_SNP [dm3] 3L_419910_SNP [dm6]	G	A	1.008e^-4	0.43	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	13527403	2R_13527403_SNP [dm3] 2R_17639898_SNP [dm6]	G	A	1.011e^-4	0.43	UPSTREAM CG10936 INTERGENIC	insulator Insulator_Class_I.mE01
2L	14972246	2L_14972246_SNP [dm3] 2L_14972246_SNP [dm6]	G	A	1.024e^-4	0.43	START_GAINED CG42313 UTR_5_PRIME CG42313
2R	14116315	2R_14116315_SNP [dm3] 2R_18228810_SNP [dm6]	C	T	1.025e^-4	0.43	DOWNSTREAM CR45310 EXON CR45311
2L	6200232	2L_6200232_SNP [dm3] 2L_6200232_SNP [dm6]	G	T	1.025e^-4	0.43	INTRON CG34380	TF binding site mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA
2L	12120194	2L_12120194_SNP [dm3] 2L_12120194_SNP [dm6]	C	A	1.029e^-4	0.43	INTRON CG17211
3L	7152255	3L_7152255_SNP [dm3] 3L_7159155_SNP [dm6]	A	G	1.029e^-4	0.43	DOWNSTREAM Dscam2 & 1 other INTERGENIC
3R	16197994	3R_16197994_SNP [dm3] 3R_20372272_SNP [dm6]	T	C	1.029e^-4	0.43	INTERGENIC
X	2243546	X_2243546_SNP [dm3] X_2349513_SNP [dm6]	T	A	1.037e^-4	0.43	UTR_5_PRIME ptr	TF binding site BDTNP1_TFBS_dl
X	5600012	X_5600012_SNP [dm3] X_5705979_SNP [dm6]	A	C	1.037e^-4	0.43	INTRON CG4096
3R	20337059	3R_20337059_SNP [dm3] 3R_24511337_SNP [dm6]	A	C	1.039e^-4	0.43	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2708165	X_2708165_SNP [dm3] X_2814132_SNP [dm6]	C	T	1.040e^-4	0.43	INTRON kirre
3L	13980643	3L_13980643_SNP [dm3] 3L_13987543_SNP [dm6]	C	A	1.043e^-4	0.43	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	13980655	3L_13980655_SNP [dm3] 3L_13987555_SNP [dm6]	A	G	1.043e^-4	0.43	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	6760690	2R_6760690_SNP [dm3] 2R_10873185_SNP [dm6]	T	C	1.048e^-4	0.43	INTRON CG30015
2R	12616507	2R_12616507_SNP [dm3] 2R_16729002_SNP [dm6]	T	C	1.050e^-4	0.43	INTRON CG30463
2R	12616523	2R_12616523_SNP [dm3] 2R_16729018_SNP [dm6]	C	G	1.050e^-4	0.43	INTRON CG30463
2R	12616531	2R_12616531_SNP [dm3] 2R_16729026_SNP [dm6]	C	T	1.050e^-4	0.43	INTRON CG30463
3R	18855380	3R_18855380_SNP [dm3] 3R_23029658_SNP [dm6]	C	T	1.050e^-4	0.43	INTERGENIC	regulatory region REDfly_CRMs
2L	16640146	2L_16640146_DEL [dm3] 2L_16640146_DEL [dm6]	ATGTCTTTGAGCTGAA...	A	1.055e^-4	0.431	INTRON CG42389
3L	18852267	3L_18852267_SNP [dm3] 3L_18859167_SNP [dm6]	A	G	1.069e^-4	0.431	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13155605	2L_13155605_SNP [dm3] 2L_13155605_SNP [dm6]	A	C	1.069e^-4	0.431	INTERGENIC
2R	3835763	2R_3835763_SNP [dm3] 2R_7948258_SNP [dm6]	C	G	1.072e^-4	0.431	NON_SYNONYMOUS_CODING CG14764	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18776015	3R_18776015_SNP [dm3] 3R_22950293_SNP [dm6]	G	C	1.079e^-4	0.431	INTRON klg
2R	4256309	2R_4256309_SNP [dm3] 2R_8368804_SNP [dm6]	G	A	1.079e^-4	0.431	UTR_3_PRIME CG2127 UPSTREAM CG18449 INTRON pdm3	TF binding site mE1_TFBS_cad
3R	26853389	3R_26853389_DEL [dm3] 3R_31027667_DEL [dm6]	TGATGCCT	T	1.079e^-4	0.431	INTERGENIC
3L	14176556	3L_14176556_SNP [dm3] 3L_14183456_SNP [dm6]	G	C	1.080e^-4	0.431	INTERGENIC
X	2519342	X_2519342_SNP [dm3] X_2625309_SNP [dm6]	G	A	1.082e^-4	0.431	UPSTREAM brv3 INTRON PI4KIIIalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1654316	2L_1654316_SNP [dm3] 2L_1654316_SNP [dm6]	A	C	1.082e^-4	0.431	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13841534	2L_13841534_SNP [dm3] 2L_13841534_SNP [dm6]	A	G	1.084e^-4	0.431	UPSTREAM CG33307 INTRON CenG1A
2R	10171225	2R_10171225_SNP [dm3] 2R_14283720_SNP [dm6]	A	T	1.086e^-4	0.431	INTRON Ih
2R	9820113	2R_9820113_SNP [dm3] 2R_13932608_SNP [dm6]	A	G	1.091e^-4	0.431	INTRON shot
3L	12596736	3L_12596736_DEL [dm3] 3L_12603636_DEL [dm6]	TCTTCGAG	T	1.095e^-4	0.431	INTERGENIC
X	15153841	X_15153841_SNP [dm3] X_15259808_SNP [dm6]	C	T	1.097e^-4	0.431	INTERGENIC
2R	5646709	2R_5646709_DEL [dm3] 2R_9759204_DEL [dm6]	TCTAATGTC	T	1.100e^-4	0.431	INTRON trpl
3R	25163607	3R_25163607_SNP [dm3] 3R_29337885_SNP [dm6]	T	A	1.100e^-4	0.431	INTERGENIC
2R	7806644	2R_7806644_SNP [dm3] 2R_11919139_SNP [dm6]	C	T	1.101e^-4	0.431	DOWNSTREAM CR44305 INTERGENIC
2R	7806646	2R_7806646_SNP [dm3] 2R_11919141_SNP [dm6]	A	G	1.101e^-4	0.431	DOWNSTREAM CR44305 INTERGENIC
2R	7806648	2R_7806648_DEL [dm3] 2R_11919143_DEL [dm6]	ATCCTATAC	A	1.101e^-4	0.431	DOWNSTREAM CR44305 INTERGENIC
X	13253185	X_13253185_SNP [dm3] X_13359152_SNP [dm6]	C	A	1.101e^-4	0.431	UPSTREAM Syt12 INTERGENIC
3R	11913378	3R_11913378_SNP [dm3] 3R_16087656_SNP [dm6]	C	T	1.104e^-4	0.432	DOWNSTREAM sxe2 INTRON Mhcl
3L	12727165	3L_12727165_SNP [dm3] 3L_12734065_SNP [dm6]	G	C	1.107e^-4	0.432	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8840736	X_8840736_SNP [dm3] X_8946703_SNP [dm6]	A	T	1.111e^-4	0.432	INTRON rdgA
3R	26177596	3R_26177596_SNP [dm3] 3R_30351874_SNP [dm6]	C	T	1.113e^-4	0.432	INTRON hdc
3L	8538720	3L_8538720_SNP [dm3] 3L_8545620_SNP [dm6]	T	A	1.114e^-4	0.432	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	12625765	2R_12625765_SNP [dm3] 2R_16738260_SNP [dm6]	A	T	1.124e^-4	0.433	UPSTREAM CG43104 EXON CR44464	TF binding site mE1_TFBS_cad
3R	16036055	3R_16036055_SNP [dm3] 3R_20210333_SNP [dm6]	G	C	1.126e^-4	0.433	UPSTREAM CG17199 INTRON Nlg4
3L	12735704	3L_12735704_SNP [dm3] 3L_12742604_SNP [dm6]	A	G	1.128e^-4	0.433	UTR_5_PRIME CG32112 INTRON CG32112
3L	22996611	3L_22996611_SNP [dm3] 3L_23003511_SNP [dm6]	A	C	1.130e^-4	0.433	INTRON nrm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9891613	2R_9891613_SNP [dm3] 2R_14004108_SNP [dm6]	T	A	1.133e^-4	0.433	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18665543	2R_18665543_SNP [dm3] 2R_22778038_SNP [dm6]	A	T	1.135e^-4	0.433	INTRON CG42260
2R	9114147	2R_9114147_SNP [dm3] 2R_13226642_SNP [dm6]	G	A	1.136e^-4	0.433	SPLICE_SITE_REGION Dp INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5267064	2L_5267064_SNP [dm3] 2L_5267064_SNP [dm6]	T	C	1.142e^-4	0.433	INTRON tkv & 1 other
2R	19289455	2R_19289455_SNP [dm3] 2R_23401932_SNP [dm6]	T	C	1.142e^-4	0.433	INTRON CG3520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2972978	3R_2972978_INS [dm3] 3R_7147256_INS [dm6]	T	TGACTAAG	1.142e^-4	0.433	INTRON CG2656 & 1 other	TF binding site mE1_TFBS_inv
3R	20337029	3R_20337029_SNP [dm3] 3R_24511307_SNP [dm6]	A	G	1.143e^-4	0.433	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13286806	2R_13286806_SNP [dm3] 2R_17399301_SNP [dm6]	G	A	1.148e^-4	0.434	INTRON Sip1
3R	11911637	3R_11911637_SNP [dm3] 3R_16085915_SNP [dm6]	T	C	1.157e^-4	0.434	SYNONYMOUS_CODING sxe2 INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10338524	3L_10338524_SNP [dm3] 3L_10345424_SNP [dm6]	G	C	1.158e^-4	0.434	INTERGENIC
3L	10338586	3L_10338586_MNP [dm3] 3L_10345486_MNP [dm6]	AAT	TTC	1.158e^-4	0.434	INTERGENIC
X	2519257	X_2519257_INS [dm3] X_2625224_INS [dm6]	C	CA	1.164e^-4	0.434	UPSTREAM brv3 INTRON PI4KIIIalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24522695	3R_24522695_DEL [dm3] 3R_28696973_DEL [dm6]	AAG	A	1.165e^-4	0.434	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7975567	2L_7975567_SNP [dm3] 2L_7975567_SNP [dm6]	G	C	1.166e^-4	0.434	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6331522	X_6331522_DEL [dm3] X_6437489_DEL [dm6]	GGTATATATG	G	1.167e^-4	0.434	INTRON CG42340
2R	10463791	2R_10463791_SNP [dm3] 2R_14576286_SNP [dm6]	T	A	1.168e^-4	0.434	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18287792	2R_18287792_SNP [dm3] 2R_22400287_SNP [dm6]	C	T	1.170e^-4	0.434	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9112662	2L_9112662_SNP [dm3] 2L_9112662_SNP [dm6]	G	T	1.171e^-4	0.434	INTRON Or30a
3R	11380212	3R_11380212_SNP [dm3] 3R_15554490_SNP [dm6]	A	C	1.178e^-4	0.436	INTERGENIC
2R	11989584	2R_11989584_SNP [dm3] 2R_16102079_SNP [dm6]	A	T	1.188e^-4	0.438	UPSTREAM Rho1 INTRON CG8414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14140811	2R_14140811_SNP [dm3] 2R_18253306_SNP [dm6]	A	C	1.191e^-4	0.438	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6671903	3L_6671903_SNP [dm3] 3L_6678803_SNP [dm6]	A	C	1.192e^-4	0.438	INTERGENIC
2R	10171260	2R_10171260_SNP [dm3] 2R_14283755_SNP [dm6]	G	A	1.193e^-4	0.438	INTRON Ih
3L	12637569	3L_12637569_SNP [dm3] 3L_12644469_SNP [dm6]	C	T	1.201e^-4	0.439	INTRON CR32111	regulatory region REDfly_CRMs
2L	14357275	2L_14357275_SNP [dm3] 2L_14357275_SNP [dm6]	T	C	1.203e^-4	0.439	UPSTREAM Rab14 & 1 other INTRON Rab14
3L	6913927	3L_6913927_SNP [dm3] 3L_6920827_SNP [dm6]	T	A	1.204e^-4	0.439	INTERGENIC
X	16177640	X_16177640_SNP [dm3] X_16283607_SNP [dm6]	C	A	1.210e^-4	0.439	INTRON eas	TF binding site BDTNP1_TFBS_dl
X	3308410	X_3308410_SNP [dm3] X_3414377_SNP [dm6]	G	A	1.212e^-4	0.439	INTRON CR44999 & 1 other
2L	7518936	2L_7518936_SNP [dm3] 2L_7518936_SNP [dm6]	G	A	1.215e^-4	0.439	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	2524697	X_2524697_SNP [dm3] X_2630664_SNP [dm6]	C	T	1.216e^-4	0.439	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10874797	3L_10874797_SNP [dm3] 3L_10881697_SNP [dm6]	G	C	1.216e^-4	0.439	NON_SYNONYMOUS_CODING CG6409	TF binding site mE1_TFBS_chinmo
2L	2436751	2L_2436751_SNP [dm3] 2L_2436751_SNP [dm6]	G	A	1.221e^-4	0.44	INTRON dpp
2R	13303122	2R_13303122_SNP [dm3] 2R_17415617_SNP [dm6]	A	G	1.238e^-4	0.442	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14615850	3R_14615850_DEL [dm3] 3R_18790128_DEL [dm6]	TTTAAGT	T	1.239e^-4	0.442	INTRON CG7720
2R	10106739	2R_10106739_SNP [dm3] 2R_14219234_SNP [dm6]	A	G	1.242e^-4	0.442	UPSTREAM CG8468 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11394583	3R_11394583_SNP [dm3] 3R_15568861_SNP [dm6]	T	C	1.242e^-4	0.442	INTERGENIC
3L	4443523	3L_4443523_SNP [dm3] 3L_4443523_SNP [dm6]	A	T	1.243e^-4	0.442	INTERGENIC
2L	2892627	2L_2892627_SNP [dm3] 2L_2892627_SNP [dm6]	T	G	1.252e^-4	0.442	INTRON lilli	TF binding site BDTNP1_TFBS_twi
3L	13178658	3L_13178658_SNP [dm3] 3L_13185558_SNP [dm6]	A	G	1.254e^-4	0.442	INTERGENIC
3R	24875109	3R_24875109_SNP [dm3] 3R_29049387_SNP [dm6]	C	G	1.254e^-4	0.442	UPSTREAM CG11837 DOWNSTREAM Pkc98E INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7481748	2L_7481748_SNP [dm3] 2L_7481748_SNP [dm6]	A	T	1.256e^-4	0.442	SYNONYMOUS_CODING Ziz
X	7328992	X_7328992_SNP [dm3] X_7434959_SNP [dm6]	A	T	1.258e^-4	0.442	INTERGENIC
3R	17996902	3R_17996902_SNP [dm3] 3R_22171180_SNP [dm6]	G	A	1.262e^-4	0.442	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3421272	X_3421272_DEL [dm3] X_3527239_DEL [dm6]	CAAC	TG	1.262e^-4	0.442	INTRON CG32791
3R	26811121	3R_26811121_SNP [dm3] 3R_30985399_SNP [dm6]	C	T	1.263e^-4	0.442	INTRON 5-HT7
2L	14312576	2L_14312576_SNP [dm3] 2L_14312576_SNP [dm6]	C	T	1.264e^-4	0.442	INTRON wb
2R	12876862	2R_12876862_SNP [dm3] 2R_16989357_SNP [dm6]	G	A	1.268e^-4	0.442	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12834794	X_12834794_INS [dm3] X_12940761_INS [dm6]	G	ACAAAATGTTTTAAATC...	1.268e^-4	0.442	UPSTREAM fne INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5937887	2L_5937887_SNP [dm3] 2L_5937887_SNP [dm6]	T	G	1.269e^-4	0.442	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	24294448	3L_24294448_SNP [dm3] 3L_24301348_SNP [dm6]	C	T	1.273e^-4	0.442	INTERGENIC
2R	2025076	2R_2025076_SNP [dm3] 2R_6137571_SNP [dm6]	C	A	1.274e^-4	0.442	NON_SYNONYMOUS_CODING CG14589 INTRON EcR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15153535	X_15153535_SNP [dm3] X_15259502_SNP [dm6]	T	A	1.275e^-4	0.442	INTERGENIC
3R	25782026	3R_25782026_SNP [dm3] 3R_29956304_SNP [dm6]	T	C	1.275e^-4	0.442	INTRON TkR99D
3R	24521848	3R_24521848_SNP [dm3] 3R_28696126_SNP [dm6]	A	T	1.291e^-4	0.445	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14609400	3R_14609400_SNP [dm3] 3R_18783678_SNP [dm6]	T	G	1.294e^-4	0.445	INTRON CG7720
3L	377744	3L_377744_SNP [dm3] 3L_377744_SNP [dm6]	T	A	1.300e^-4	0.445	UPSTREAM trh INTRON trh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	377748	3L_377748_SNP [dm3] 3L_377748_SNP [dm6]	T	A	1.300e^-4	0.445	UPSTREAM trh INTRON trh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	377755	3L_377755_SNP [dm3] 3L_377755_SNP [dm6]	C	T	1.300e^-4	0.445	UPSTREAM trh INTRON trh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	9519370	2L_9519370_SNP [dm3] 2L_9519370_SNP [dm6]	A	T	1.300e^-4	0.445	INTRON CG33298
3L	18330196	3L_18330196_SNP [dm3] 3L_18337096_SNP [dm6]	A	C	1.302e^-4	0.445	INTERGENIC
3L	18330197	3L_18330197_SNP [dm3] 3L_18337097_SNP [dm6]	A	T	1.302e^-4	0.445	INTERGENIC
2L	1057974	2L_1057974_SNP [dm3] 2L_1057974_SNP [dm6]	T	A	1.311e^-4	0.447	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	11404501	3L_11404501_SNP [dm3] 3L_11411401_SNP [dm6]	C	G	1.318e^-4	0.447	INTERGENIC
3R	24520694	3R_24520694_SNP [dm3] 3R_28694972_SNP [dm6]	C	T	1.321e^-4	0.447	INTRON CG9990	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12385415	3R_12385415_SNP [dm3] 3R_16559693_SNP [dm6]	G	A	1.324e^-4	0.447	INTRON CG42342
3L	12738785	3L_12738785_SNP [dm3] 3L_12745685_SNP [dm6]	T	C	1.324e^-4	0.447	DOWNSTREAM CG32112 & 1 other INTRON CG32109
2L	4505573	2L_4505573_SNP [dm3] 2L_4505573_SNP [dm6]	C	T	1.325e^-4	0.447	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4194723	2R_4194723_SNP [dm3] 2R_8307218_SNP [dm6]	G	A	1.331e^-4	0.448	INTERGENIC
X	17765971	X_17765971_SNP [dm3] X_17871938_SNP [dm6]	G	A	1.334e^-4	0.449	INTRON mnb	TF binding site mE1_TFBS_Trl
2L	1030448	2L_1030448_SNP [dm3] 2L_1030448_SNP [dm6]	C	T	1.342e^-4	0.451	INTRON IA-2
2L	9846749	2L_9846749_SNP [dm3] 2L_9846749_SNP [dm6]	A	G	1.344e^-4	0.451	INTRON nAChRalpha6
3L	10570482	3L_10570482_SNP [dm3] 3L_10577382_SNP [dm6]	A	T	1.351e^-4	0.451	INTRON A2bp1
X	12273493	X_12273493_SNP [dm3] X_12379460_SNP [dm6]	G	A	1.351e^-4	0.451	INTERGENIC
X	6331565	X_6331565_SNP [dm3] X_6437532_SNP [dm6]	C	T	1.355e^-4	0.451	INTRON CG42340
2R	6058410	2R_6058410_SNP [dm3] 2R_10170905_SNP [dm6]	C	A	1.356e^-4	0.451	INTRON KCNQ
2L	9572159	2L_9572159_SNP [dm3] 2L_9572159_SNP [dm6]	T	C	1.359e^-4	0.451	SYNONYMOUS_CODING CG3838
3R	11908617	3R_11908617_SNP [dm3] 3R_16082895_SNP [dm6]	G	A	1.360e^-4	0.451	NON_SYNONYMOUS_CODING Mhcl UPSTREAM sxe2 INTRON Mhcl
3L	13231648	3L_13231648_SNP [dm3] 3L_13238548_SNP [dm6]	A	T	1.377e^-4	0.456	INTRON caps
2R	7569331	2R_7569331_SNP [dm3] 2R_11681826_SNP [dm6]	C	G	1.382e^-4	0.456	INTRON Buffy	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	4505507	2L_4505507_SNP [dm3] 2L_4505507_SNP [dm6]	G	A	1.382e^-4	0.456	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	19987359	3R_19987359_SNP [dm3] 3R_24161637_SNP [dm6]	G	C	1.391e^-4	0.457	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7465916	3L_7465916_SNP [dm3] 3L_7472816_SNP [dm6]	G	A	1.391e^-4	0.457	DOWNSTREAM CG8541 INTERGENIC
3R	26172897	3R_26172897_SNP [dm3] 3R_30347175_SNP [dm6]	A	G	1.401e^-4	0.459	INTRON hdc
3R	10648585	3R_10648585_SNP [dm3] 3R_14822863_SNP [dm6]	G	T	1.403e^-4	0.459	INTRON btsz	TF binding site mE1_TFBS_bab1
3R	22648336	3R_22648336_SNP [dm3] 3R_26822614_SNP [dm6]	A	T	1.411e^-4	0.46	INTRON Tl
3L	18739660	3L_18739660_SNP [dm3] 3L_18746560_SNP [dm6]	C	A	1.412e^-4	0.46	UTR_3_PRIME MED11 DOWNSTREAM Nufip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	23953167	3L_23953167_SNP [dm3] 3L_23960067_SNP [dm6]	G	T	1.413e^-4	0.46	INTRON CG40470
3R	22902668	3R_22902668_SNP [dm3] 3R_27076946_SNP [dm6]	A	G	1.415e^-4	0.46	INTRON CG14257
3R	2683188	3R_2683188_SNP [dm3] 3R_6857466_SNP [dm6]	G	A	1.418e^-4	0.46	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9890990	2R_9890990_SNP [dm3] 2R_14003485_SNP [dm6]	A	C	1.419e^-4	0.46	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9891588	2R_9891588_SNP [dm3] 2R_14004083_SNP [dm6]	A	T	1.421e^-4	0.46	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12738686	3L_12738686_SNP [dm3] 3L_12745586_SNP [dm6]	A	T	1.424e^-4	0.46	DOWNSTREAM CG32112 INTRON CG32109
2L	8084292	2L_8084292_SNP [dm3] 2L_8084292_SNP [dm6]	G	A	1.425e^-4	0.46	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13231662	3L_13231662_SNP [dm3] 3L_13238562_SNP [dm6]	C	A	1.437e^-4	0.461	INTRON caps
X	1160159	X_1160159_SNP [dm3] X_1266126_SNP [dm6]	C	A	1.437e^-4	0.461	INTRON Atf3
2R	5991228	2R_5991228_SNP [dm3] 2R_10103723_SNP [dm6]	A	G	1.442e^-4	0.461	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl
X	13682402	X_13682402_SNP [dm3] X_13788369_SNP [dm6]	T	C	1.445e^-4	0.461	INTRON inaE
2L	4351003	2L_4351003_SNP [dm3] 2L_4351003_SNP [dm6]	T	C	1.446e^-4	0.461	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11404498	3L_11404498_SNP [dm3] 3L_11411398_SNP [dm6]	A	T	1.447e^-4	0.461	INTERGENIC
2R	14785869	2R_14785869_SNP [dm3] 2R_18898364_SNP [dm6]	C	T	1.449e^-4	0.461	INTRON sano
X	12395027	X_12395027_SNP [dm3] X_12500994_SNP [dm6]	C	T	1.450e^-4	0.461	INTRON CG2556
X	15153860	X_15153860_SNP [dm3] X_15259827_SNP [dm6]	C	T	1.451e^-4	0.461	INTERGENIC
3R	7517454	3R_7517454_SNP [dm3] 3R_11691732_SNP [dm6]	T	A	1.454e^-4	0.461	NON_SYNONYMOUS_CODING CG18765	TF binding site mE1_TFBS_sens
3L	2882217	3L_2882217_SNP [dm3] 3L_2882217_SNP [dm6]	G	C	1.459e^-4	0.462	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15435630	X_15435630_INS [dm3] X_15541597_INS [dm6]	G	GCATTGCG	1.469e^-4	0.463	INTRON Ac13E
2R	14786335	2R_14786335_INS [dm3] 2R_18898830_INS [dm6]	T	TTCCT	1.475e^-4	0.463	UPSTREAM snoRNA:Me28S-U1130 INTRON sano
3R	17450908	3R_17450908_SNP [dm3] 3R_21625186_SNP [dm6]	C	T	1.476e^-4	0.463	SYNONYMOUS_CODING E2f	TF binding site mE1_TFBS_cad
2L	1057946	2L_1057946_SNP [dm3] 2L_1057946_SNP [dm6]	C	T	1.479e^-4	0.463	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	13980425	3L_13980425_SNP [dm3] 3L_13987325_SNP [dm6]	C	T	1.481e^-4	0.463	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3R	9899469	3R_9899469_SNP [dm3] 3R_14073747_SNP [dm6]	A	G	1.482e^-4	0.463	INTRON foxo
3R	9899483	3R_9899483_SNP [dm3] 3R_14073761_SNP [dm6]	C	T	1.482e^-4	0.463	INTRON foxo
2R	6057935	2R_6057935_SNP [dm3] 2R_10170430_SNP [dm6]	C	T	1.487e^-4	0.464	INTRON KCNQ
3R	26176643	3R_26176643_SNP [dm3] 3R_30350921_SNP [dm6]	T	C	1.490e^-4	0.464	INTRON hdc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14361515	X_14361515_DEL [dm3] X_14467482_DEL [dm6]	AAGCCAAACCA...	A	1.491e^-4	0.464	INTERGENIC
3R	26486159	3R_26486159_SNP [dm3] 3R_30660437_SNP [dm6]	T	C	1.494e^-4	0.464	INTERGENIC
2L	20035716	2L_20035716_SNP [dm3] 2L_20035716_SNP [dm6]	T	G	1.495e^-4	0.464	INTRON sNPF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10338496	3L_10338496_SNP [dm3] 3L_10345396_SNP [dm6]	C	A	1.499e^-4	0.464	INTERGENIC
2R	11519723	2R_11519723_SNP [dm3] 2R_15632218_SNP [dm6]	C	A	1.504e^-4	0.465	INTRON CG42524
3R	20337072	3R_20337072_SNP [dm3] 3R_24511350_SNP [dm6]	T	A	1.513e^-4	0.465	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26177431	3R_26177431_SNP [dm3] 3R_30351709_SNP [dm6]	A	G	1.514e^-4	0.465	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	838367	2R_838367_SNP [dm3] 2R_4950862_SNP [dm6]	G	C	1.515e^-4	0.465	INTRON Ir41a	transposable element FlyBase
3R	26811346	3R_26811346_SNP [dm3] 3R_30985624_SNP [dm6]	A	G	1.515e^-4	0.465	INTRON 5-HT7
2L	17338537	2L_17338537_INS [dm3] 2L_17338537_INS [dm6]	T	TA	1.516e^-4	0.465	INTERGENIC
3R	12385435	3R_12385435_SNP [dm3] 3R_16559713_SNP [dm6]	T	C	1.522e^-4	0.465	INTRON CG42342
2R	15016731	2R_15016731_SNP [dm3] 2R_19129226_SNP [dm6]	C	T	1.526e^-4	0.465	UTR_5_PRIME CG15117 UPSTREAM botv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11921102	3R_11921102_SNP [dm3] 3R_16095380_SNP [dm6]	A	C	1.528e^-4	0.465	INTRON Mhcl
2R	12651215	2R_12651215_SNP [dm3] 2R_16763710_SNP [dm6]	A	C	1.531e^-4	0.465	INTRON unc-104
3L	12727288	3L_12727288_SNP [dm3] 3L_12734188_SNP [dm6]	C	A	1.535e^-4	0.465	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13682362	X_13682362_SNP [dm3] X_13788329_SNP [dm6]	C	T	1.535e^-4	0.465	INTRON inaE
X	13682372	X_13682372_SNP [dm3] X_13788339_SNP [dm6]	A	C	1.535e^-4	0.465	INTRON inaE
2L	4858068	2L_4858068_SNP [dm3] 2L_4858068_SNP [dm6]	G	A	1.538e^-4	0.465	INTRON pog
2R	9895770	2R_9895770_SNP [dm3] 2R_14008265_SNP [dm6]	C	G	1.556e^-4	0.47	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	20117497	2R_20117497_SNP [dm3] 2R_24229974_SNP [dm6]	T	C	1.558e^-4	0.47	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12503635	2R_12503635_SNP [dm3] 2R_16616130_SNP [dm6]	A	T	1.572e^-4	0.473	INTRON CG5065
3L	12735678	3L_12735678_SNP [dm3] 3L_12742578_SNP [dm6]	A	C	1.577e^-4	0.474	INTRON CG32112
X	8840723	X_8840723_SNP [dm3] X_8946690_SNP [dm6]	T	C	1.582e^-4	0.474	INTRON rdgA
2L	7264642	2L_7264642_SNP [dm3] 2L_7264642_SNP [dm6]	T	G	1.585e^-4	0.474	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12724947	3L_12724947_SNP [dm3] 3L_12731847_SNP [dm6]	T	G	1.585e^-4	0.474	INTERGENIC
3R	19464668	3R_19464668_SNP [dm3] 3R_23638946_SNP [dm6]	T	C	1.589e^-4	0.474	INTRON CG31145
2L	14964377	2L_14964377_SNP [dm3] 2L_14964377_SNP [dm6]	A	G	1.591e^-4	0.474	INTRON CG42313
2R	12064823	2R_12064823_SNP [dm3] 2R_16177318_SNP [dm6]	G	C	1.591e^-4	0.474	INTRON Ptp52F
X	6605704	X_6605704_DEL [dm3] X_6711671_DEL [dm6]	GGCAAAG	G	1.595e^-4	0.474	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	1.597e^-4	0.474	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
3L	24153466	3L_24153466_SNP [dm3] 3L_24160366_SNP [dm6]	C	T	1.608e^-4	0.475	INTRON Snap25
2R	13286730	2R_13286730_SNP [dm3] 2R_17399225_SNP [dm6]	G	T	1.609e^-4	0.475	INTRON Sip1
X	12436212	X_12436212_SNP [dm3] X_12542179_SNP [dm6]	C	T	1.610e^-4	0.475	INTRON CG43921
2L	1333893	2L_1333893_SNP [dm3] 2L_1333893_SNP [dm6]	G	A	1.611e^-4	0.475	UPSTREAM CG5440 INTERGENIC
X	3421142	X_3421142_SNP [dm3] X_3527109_SNP [dm6]	T	A	1.619e^-4	0.477	INTRON CG32791
3R	25286171	3R_25286171_SNP [dm3] 3R_29460449_SNP [dm6]	T	C	1.622e^-4	0.477	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19466696	3R_19466696_SNP [dm3] 3R_23640974_SNP [dm6]	T	C	1.625e^-4	0.477	INTRON CG31145
2L	15349576	2L_15349576_INS [dm3] 2L_15349576_INS [dm6]	C	CGATCTGGCATTGGTAGC...	1.628e^-4	0.477	INTERGENIC
2L	17338536	2L_17338536_SNP [dm3] 2L_17338536_SNP [dm6]	T	A	1.637e^-4	0.478	INTERGENIC
X	21446053	X_21446053_SNP [dm3] X_21575026_SNP [dm6]	C	T	1.637e^-4	0.478	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	1601370	3L_1601370_SNP [dm3] 3L_1601370_SNP [dm6]	A	G	1.643e^-4	0.478	SYNONYMOUS_CODING CG12104 DOWNSTREAM CG13917	TF binding site mE1_TFBS_cad
3L	9287715	3L_9287715_SNP [dm3] 3L_9294615_SNP [dm6]	G	A	1.653e^-4	0.478	INTERGENIC
3L	24393579	3L_24393579_DEL [dm3] 3L_24400479_DEL [dm6]	ATTATTTCATAATTTTATTA...	A	1.654e^-4	0.478	INTRON nvd
3R	1772344	3R_1772344_SNP [dm3] 3R_5946622_SNP [dm6]	C	A	1.656e^-4	0.478	INTRON CG34113	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	17340941	2L_17340941_SNP [dm3] 2L_17340941_SNP [dm6]	C	T	1.657e^-4	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2564159	2L_2564159_SNP [dm3] 2L_2564159_SNP [dm6]	C	T	1.660e^-4	0.478	DOWNSTREAM Cyp309a2 INTRON Cyp309a1
3L	12743366	3L_12743366_SNP [dm3] 3L_12750266_SNP [dm6]	G	C	1.661e^-4	0.478	UTR_5_PRIME CG10984 UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5821725	2R_5821725_SNP [dm3] 2R_9934220_SNP [dm6]	G	C	1.662e^-4	0.478	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14610594	3R_14610594_SNP [dm3] 3R_18784872_SNP [dm6]	T	G	1.663e^-4	0.478	INTRON CG7720
2L	1834378	2L_1834378_DEL [dm3] 2L_1834378_DEL [dm6]	AA	A	1.663e^-4	0.478	INTERGENIC
2L	7440285	2L_7440285_SNP [dm3] 2L_7440285_SNP [dm6]	C	T	1.664e^-4	0.478	UPSTREAM CG5973 INTRON CG5973
3L	12727267	3L_12727267_SNP [dm3] 3L_12734167_SNP [dm6]	T	C	1.667e^-4	0.478	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5583990	3L_5583990_SNP [dm3] 3L_5590890_SNP [dm6]	C	T	1.671e^-4	0.478	SYNONYMOUS_CODING spo DOWNSTREAM l_3_psg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2686078	3R_2686078_SNP [dm3] 3R_6860356_SNP [dm6]	C	T	1.677e^-4	0.479	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18725678	2L_18725678_SNP [dm3] 2L_18725678_SNP [dm6]	A	G	1.679e^-4	0.479	INTRON CG10348
2L	10788022	2L_10788022_SNP [dm3] 2L_10788022_SNP [dm6]	T	A	1.683e^-4	0.48	INTRON CG31869
3L	18915300	3L_18915300_SNP [dm3] 3L_18922200_SNP [dm6]	C	T	1.703e^-4	0.483	UPSTREAM CG3819 DOWNSTREAM CG32204 INTERGENIC
2L	5963772	2L_5963772_SNP [dm3] 2L_5963772_SNP [dm6]	A	G	1.704e^-4	0.483	NON_SYNONYMOUS_CODING psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10751750	2L_10751750_SNP [dm3] 2L_10751750_SNP [dm6]	A	C	1.706e^-4	0.483	INTRON CG17124	TF binding site mE1_TFBS_cad
3R	23658219	3R_23658219_SNP [dm3] 3R_27832497_SNP [dm6]	C	T	1.707e^-4	0.483	INTRON CG34353
2R	6058705	2R_6058705_SNP [dm3] 2R_10171200_SNP [dm6]	T	C	1.710e^-4	0.483	INTRON KCNQ
2R	839119	2R_839119_INS [dm3] 2R_4951614_INS [dm6]	T	TTTCA	1.715e^-4	0.484	INTRON Ir41a	transposable element FlyBase
3R	19987310	3R_19987310_SNP [dm3] 3R_24161588_SNP [dm6]	A	C	1.716e^-4	0.484	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16146658	3L_16146658_SNP [dm3] 3L_16153558_SNP [dm6]	G	A	1.722e^-4	0.484	INTRON CG5151
2R	12876648	2R_12876648_SNP [dm3] 2R_16989143_SNP [dm6]	G	C	1.724e^-4	0.484	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13233057	3L_13233057_SNP [dm3] 3L_13239957_SNP [dm6]	T	A	1.730e^-4	0.485	INTRON caps	TF binding site mE1_TFBS_cad
3R	24280739	3R_24280739_SNP [dm3] 3R_28455017_SNP [dm6]	T	A	1.741e^-4	0.486	INTRON beat-VI
3L	487192	3L_487192_SNP [dm3] 3L_487192_SNP [dm6]	C	T	1.749e^-4	0.486	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17188743	X_17188743_SNP [dm3] X_17294710_SNP [dm6]	T	C	1.761e^-4	0.486	INTRON CG5445 & 1 other
3R	21405232	3R_21405232_SNP [dm3] 3R_25579510_SNP [dm6]	G	A	1.769e^-4	0.486	INTRON msi
3L	13775025	3L_13775025_SNP [dm3] 3L_13781925_SNP [dm6]	A	G	1.778e^-4	0.486	INTRON bru-3
2R	6221657	2R_6221657_SNP [dm3] 2R_10334152_SNP [dm6]	G	A	1.782e^-4	0.486	INTRON CG42732
2L	10788496	2L_10788496_SNP [dm3] 2L_10788496_SNP [dm6]	G	C	1.782e^-4	0.486	INTRON CG31869
3L	8039119	3L_8039119_SNP [dm3] 3L_8046019_SNP [dm6]	T	A	1.785e^-4	0.486	INTRON nmo
X	17258261	X_17258261_SNP [dm3] X_17364228_SNP [dm6]	T	C	1.789e^-4	0.486	INTERGENIC
X	17258268	X_17258268_SNP [dm3] X_17364235_SNP [dm6]	T	A	1.789e^-4	0.486	INTERGENIC
X	17258588	X_17258588_SNP [dm3] X_17364555_SNP [dm6]	A	G	1.789e^-4	0.486	INTERGENIC
X	17258605	X_17258605_SNP [dm3] X_17364572_SNP [dm6]	A	T	1.789e^-4	0.486	INTERGENIC
3L	13231514	3L_13231514_SNP [dm3] 3L_13238414_SNP [dm6]	T	C	1.789e^-4	0.486	INTRON caps
3L	12088497	3L_12088497_SNP [dm3] 3L_12095397_SNP [dm6]	C	T	1.800e^-4	0.486	INTERGENIC
2R	15043949	2R_15043949_SNP [dm3] 2R_19156444_SNP [dm6]	C	G	1.801e^-4	0.486	INTRON ena	TF binding site mE1_TFBS_sens
2L	5805164	2L_5805164_SNP [dm3] 2L_5805164_SNP [dm6]	C	A	1.802e^-4	0.486	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4686547	2R_4686547_SNP [dm3] 2R_8799042_SNP [dm6]	G	T	1.804e^-4	0.486	UTR_5_PRIME sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12755866	3L_12755866_SNP [dm3] 3L_12762766_SNP [dm6]	A	C	1.812e^-4	0.486	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19146961	3L_19146961_SNP [dm3] 3L_19153861_SNP [dm6]	C	T	1.813e^-4	0.486	INTRON fz2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11387089	3R_11387089_SNP [dm3] 3R_15561367_SNP [dm6]	A	G	1.820e^-4	0.486	INTERGENIC
X	17258280	X_17258280_SNP [dm3] X_17364247_SNP [dm6]	A	T	1.824e^-4	0.486	INTERGENIC
3R	11897570	3R_11897570_SNP [dm3] 3R_16071848_SNP [dm6]	A	G	1.827e^-4	0.486	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11900566	3R_11900566_SNP [dm3] 3R_16074844_SNP [dm6]	G	A	1.827e^-4	0.486	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11900583	3R_11900583_SNP [dm3] 3R_16074861_SNP [dm6]	C	T	1.827e^-4	0.486	NON_SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11906614	3R_11906614_SNP [dm3] 3R_16080892_SNP [dm6]	C	T	1.827e^-4	0.486	UTR_5_PRIME CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
3R	11907422	3R_11907422_SNP [dm3] 3R_16081700_SNP [dm6]	T	A	1.827e^-4	0.486	UPSTREAM CG32855 INTRON Mhcl
3R	11907793	3R_11907793_SNP [dm3] 3R_16082071_SNP [dm6]	T	C	1.827e^-4	0.486	INTRON Mhcl
3R	11907797	3R_11907797_SNP [dm3] 3R_16082075_SNP [dm6]	C	G	1.827e^-4	0.486	INTRON Mhcl
3L	2275103	3L_2275103_SNP [dm3] 3L_2275103_SNP [dm6]	T	C	1.830e^-4	0.486	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10338604	3L_10338604_SNP [dm3] 3L_10345504_SNP [dm6]	T	G	1.830e^-4	0.486	INTERGENIC
3L	8703859	3L_8703859_SNP [dm3] 3L_8710759_SNP [dm6]	A	G	1.835e^-4	0.486	INTERGENIC	regulatory region REDfly_CRMs
3L	8703874	3L_8703874_SNP [dm3] 3L_8710774_SNP [dm6]	A	T	1.835e^-4	0.486	INTERGENIC	regulatory region REDfly_CRMs
3L	8703906	3L_8703906_SNP [dm3] 3L_8710806_SNP [dm6]	G	T	1.835e^-4	0.486	INTERGENIC	regulatory region REDfly_CRMs
X	15153852	X_15153852_SNP [dm3] X_15259819_SNP [dm6]	C	G	1.836e^-4	0.486	INTERGENIC
X	15153894	X_15153894_SNP [dm3] X_15259861_SNP [dm6]	C	T	1.836e^-4	0.486	INTERGENIC
X	15153907	X_15153907_DEL [dm3] X_15259874_DEL [dm6]	AAATTAAAACA...	A	1.836e^-4	0.486	INTERGENIC
2R	18454799	2R_18454799_SNP [dm3] 2R_22567294_SNP [dm6]	T	G	1.836e^-4	0.486	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16794374	2L_16794374_SNP [dm3] 2L_16794374_SNP [dm6]	A	G	1.837e^-4	0.486	NON_SYNONYMOUS_CODING Ugt36Ba DOWNSTREAM CG17928	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16715183	2R_16715183_SNP [dm3] 2R_20827678_SNP [dm6]	A	C	1.838e^-4	0.486	UTR_3_PRIME sktl DOWNSTREAM sktl INTRON insc	TF binding site mE1_TFBS_cad
3R	15815362	3R_15815362_SNP [dm3] 3R_19989640_SNP [dm6]	T	A	1.838e^-4	0.486	INTRON Hs6st
2R	19075280	2R_19075280_SNP [dm3] 2R_23187757_SNP [dm6]	C	T	1.838e^-4	0.486	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19772889	3L_19772889_SNP [dm3] 3L_19779789_SNP [dm6]	C	T	1.847e^-4	0.487	INTRON CG42637 & 1 other
3R	14610246	3R_14610246_SNP [dm3] 3R_18784524_SNP [dm6]	G	C	1.849e^-4	0.487	INTRON CG7720
3L	13060871	3L_13060871_SNP [dm3] 3L_13067771_SNP [dm6]	G	A	1.850e^-4	0.487	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	8748175	3L_8748175_SNP [dm3] 3L_8755075_SNP [dm6]	A	C	1.851e^-4	0.487	UPSTREAM CG6576 INTRON Fhos
X	11252653	X_11252653_SNP [dm3] X_11358620_SNP [dm6]	G	A	1.866e^-4	0.488	UTR_3_PRIME dsh UPSTREAM Pa1	TF binding site BDTNP1_TFBS_dl
3L	10519881	3L_10519881_DEL [dm3] 3L_10526781_DEL [dm6]	GG	G	1.878e^-4	0.488	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12727296	3L_12727296_SNP [dm3] 3L_12734196_SNP [dm6]	A	T	1.882e^-4	0.488	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12727300	3L_12727300_SNP [dm3] 3L_12734200_SNP [dm6]	T	A	1.882e^-4	0.488	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12727299	3L_12727299_SNP [dm3] 3L_12734199_SNP [dm6]	G	A	1.884e^-4	0.488	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10834367	3R_10834367_SNP [dm3] 3R_15008645_SNP [dm6]	G	A	1.884e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19502453	3R_19502453_SNP [dm3] 3R_23676731_SNP [dm6]	G	A	1.895e^-4	0.488	UPSTREAM CG13822 INTERGENIC
2R	12878815	2R_12878815_SNP [dm3] 2R_16991310_SNP [dm6]	C	T	1.898e^-4	0.488	INTRON Cbp53E
2R	12878817	2R_12878817_INS [dm3] 2R_16991312_INS [dm6]	G	GGTAATATAATACGGT...	1.898e^-4	0.488	INTRON Cbp53E
3L	11557156	3L_11557156_SNP [dm3] 3L_11564056_SNP [dm6]	A	C	1.898e^-4	0.488	UTR_3_PRIME CG7394 UPSTREAM CG33267 DOWNSTREAM CG7394
2L	5804878	2L_5804878_SNP [dm3] 2L_5804878_SNP [dm6]	G	T	1.900e^-4	0.488	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	16377578	X_16377578_SNP [dm3] X_16483545_SNP [dm6]	G	T	1.904e^-4	0.488	INTRON para
3R	20496509	3R_20496509_SNP [dm3] 3R_24670787_SNP [dm6]	T	C	1.907e^-4	0.488	INTRON slo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18203187	3L_18203187_SNP [dm3] 3L_18210087_SNP [dm6]	T	C	1.907e^-4	0.488	INTERGENIC
3R	24516456	3R_24516456_INS [dm3] 3R_28690734_INS [dm6]	T	AA	1.910e^-4	0.488	INTRON CG9990	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24516460	3R_24516460_MNP [dm3] 3R_28690738_MNP [dm6]	ATGA	CATT	1.910e^-4	0.488	INTRON CG9990	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24516465	3R_24516465_MNP [dm3] 3R_28690743_MNP [dm6]	AATTC	GGCAT	1.910e^-4	0.488	INTRON CG9990	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24528327	3R_24528327_SNP [dm3] 3R_28702605_SNP [dm6]	C	T	1.910e^-4	0.488	INTRON htt
3R	24534335	3R_24534335_INS [dm3] 3R_28708613_INS [dm6]	A	ATCA	1.910e^-4	0.488		TF binding site mE1_TFBS_chinmo
3R	24534810	3R_24534810_SNP [dm3] 3R_28709088_SNP [dm6]	T	C	1.910e^-4	0.488	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo
3L	12654284	3L_12654284_INS [dm3] 3L_12661184_INS [dm6]	G	GG	1.919e^-4	0.488	UPSTREAM CR44552 INTERGENIC
2R	9823455	2R_9823455_SNP [dm3] 2R_13935950_SNP [dm6]	T	C	1.921e^-4	0.488	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19183618	3L_19183618_SNP [dm3] 3L_19190518_SNP [dm6]	G	A	1.923e^-4	0.488	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8731201	X_8731201_SNP [dm3] X_8837168_SNP [dm6]	C	A	1.926e^-4	0.488	DOWNSTREAM CR45537 INTERGENIC
3L	11553521	3L_11553521_SNP [dm3] 3L_11560421_SNP [dm6]	T	G	1.928e^-4	0.488	INTRON Mob2
3R	11899879	3R_11899879_SNP [dm3] 3R_16074157_SNP [dm6]	A	G	1.933e^-4	0.488	INTRON Mhcl	TF binding site mE1_TFBS_cad
2R	18072992	2R_18072992_SNP [dm3] 2R_22185487_SNP [dm6]	G	T	1.935e^-4	0.488	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18072995	2R_18072995_SNP [dm3] 2R_22185490_SNP [dm6]	G	A	1.935e^-4	0.488	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18073004	2R_18073004_SNP [dm3] 2R_22185499_SNP [dm6]	G	A	1.935e^-4	0.488	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	15132491	2R_15132491_SNP [dm3] 2R_19244986_SNP [dm6]	A	G	1.939e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	12727011	3L_12727011_SNP [dm3] 3L_12733911_SNP [dm6]	A	G	1.939e^-4	0.488	SYNONYMOUS_CODING SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16935334	X_16935334_SNP [dm3] X_17041301_SNP [dm6]	T	C	1.946e^-4	0.489	INTRON CG45002
2R	14848049	2R_14848049_DEL [dm3] 2R_18960544_DEL [dm6]	AAAACCCTATATA...	A	1.951e^-4	0.49	INTERGENIC
3R	18626897	3R_18626897_SNP [dm3] 3R_22801175_SNP [dm6]	G	A	1.957e^-4	0.491	INTERGENIC
3R	14609875	3R_14609875_SNP [dm3] 3R_18784153_SNP [dm6]	G	A	1.967e^-4	0.492	INTRON CG7720
3R	27008651	3R_27008651_SNP [dm3] 3R_31182929_SNP [dm6]	T	C	1.968e^-4	0.492	INTRON mesh	TF binding site mE1_TFBS_chinmo
3R	26844983	3R_26844983_SNP [dm3] 3R_31019261_SNP [dm6]	G	T	1.975e^-4	0.493	INTERGENIC
3R	4827531	3R_4827531_SNP [dm3] 3R_9001809_SNP [dm6]	G	T	1.977e^-4	0.493	UTR_5_PRIME CG31100 INTRON CG31100
3L	9883349	3L_9883349_SNP [dm3] 3L_9890249_SNP [dm6]	C	T	1.982e^-4	0.493	INTRON CalpB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	9883378	3L_9883378_MNP [dm3] 3L_9890278_MNP [dm6]	TAT	CGA	1.982e^-4	0.493	INTRON CalpB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	11788809	3R_11788809_SNP [dm3] 3R_15963087_SNP [dm6]	C	G	1.994e^-4	0.495	SYNONYMOUS_CODING CG4287 UPSTREAM CG5516 DOWNSTREAM Sap47	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	10447828	2L_10447828_SNP [dm3] 2L_10447828_SNP [dm6]	A	T	1.999e^-4	0.495	SYNONYMOUS_CODING loh
X	3349570	X_3349570_DEL [dm3] X_3455537_DEL [dm6]	TCA	G	2.002e^-4	0.495	INTRON CR44999
3L	10338528	3L_10338528_SNP [dm3] 3L_10345428_SNP [dm6]	A	C	2.003e^-4	0.495	INTERGENIC
2R	13932329	2R_13932329_SNP [dm3] 2R_18044824_SNP [dm6]	A	G	2.006e^-4	0.495	SYNONYMOUS_CODING CG5770
2L	5805167	2L_5805167_SNP [dm3] 2L_5805167_SNP [dm6]	G	A	2.007e^-4	0.495	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	23460532	3R_23460532_INS [dm3] 3R_27634810_INS [dm6]	A	AA	2.008e^-4	0.495	UTR_3_PRIME Tusp & 1 other DOWNSTREAM CG5611	TF binding site mE1_TFBS_HSA
3L	23956019	3L_23956019_SNP [dm3] 3L_23962919_SNP [dm6]	A	C	2.013e^-4	0.495	INTRON CG40470
2R	19289631	2R_19289631_INS [dm3] 2R_23402108_INS [dm6]	C	CTCAC	2.028e^-4	0.495	SPLICE_SITE_REGION CG3520 UTR_5_PRIME CG3520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	24288327	3L_24288327_SNP [dm3] 3L_24295227_SNP [dm6]	C	G	2.028e^-4	0.495	INTRON Snap25
3L	19012068	3L_19012068_DEL [dm3] 3L_19018968_DEL [dm6]	TC	A	2.035e^-4	0.495	INTRON nkd
2R	15694099	2R_15694099_SNP [dm3] 2R_19806594_SNP [dm6]	C	T	2.043e^-4	0.495	INTERGENIC
3R	19070727	3R_19070727_SNP [dm3] 3R_23245005_SNP [dm6]	G	T	2.043e^-4	0.495	INTRON CG4467
2R	18853150	2R_18853150_SNP [dm3] 2R_22965627_SNP [dm6]	T	C	2.045e^-4	0.495	INTERGENIC
2L	10788115	2L_10788115_SNP [dm3] 2L_10788115_SNP [dm6]	C	G	2.046e^-4	0.495	INTRON CG31869
3L	4627416	3L_4627416_SNP [dm3] 3L_4627416_SNP [dm6]	A	C	2.046e^-4	0.495	SPLICE_SITE_REGION Rpd3 UPSTREAM CR45438 INTRON Rpd3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14042460	3R_14042460_SNP [dm3] 3R_18216738_SNP [dm6]	C	T	2.052e^-4	0.495	INTRON CG14314	TF binding site mE1_TFBS_cad
X	22209971	X_22209971_SNP [dm3] X_22808135_SNP [dm6]	G	A	2.052e^-4	0.495	UPSTREAM CR45464 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6268940	3L_6268940_SNP [dm3] 3L_6275840_SNP [dm6]	A	C	2.055e^-4	0.495	NON_SYNONYMOUS_CODING CG43168
3R	26293688	3R_26293688_SNP [dm3] 3R_30467966_SNP [dm6]	C	T	2.062e^-4	0.495	INTRON PH4alphaEFB	TF binding site mE1_TFBS_cad
3L	18855267	3L_18855267_SNP [dm3] 3L_18862167_SNP [dm6]	T	G	2.063e^-4	0.495	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18238283	X_18238283_SNP [dm3] X_18344250_SNP [dm6]	G	A	2.070e^-4	0.495	INTRON CG6123
2L	13578683	2L_13578683_SNP [dm3] 2L_13578683_SNP [dm6]	G	C	2.074e^-4	0.495	INTRON kuz
2R	18287778	2R_18287778_SNP [dm3] 2R_22400273_SNP [dm6]	G	A	2.075e^-4	0.495	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5959636	X_5959636_SNP [dm3] X_6065603_SNP [dm6]	C	A	2.076e^-4	0.495	UTR_3_PRIME CG5921 DOWNSTREAM CG43115
2R	9547959	2R_9547959_SNP [dm3] 2R_13660454_SNP [dm6]	T	C	2.083e^-4	0.495	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	13658345	2R_13658345_SNP [dm3] 2R_17770840_SNP [dm6]	C	T	2.084e^-4	0.495	SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12115004	2R_12115004_SNP [dm3] 2R_16227499_SNP [dm6]	G	A	2.091e^-4	0.495	INTRON CG15706 & 1 other
2R	9896009	2R_9896009_SNP [dm3] 2R_14008504_SNP [dm6]	T	A	2.092e^-4	0.495	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24521820	3R_24521820_DEL [dm3] 3R_28696098_DEL [dm6]	ACTTCTAA	A	2.092e^-4	0.495	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24521829	3R_24521829_SNP [dm3] 3R_28696107_SNP [dm6]	T	G	2.092e^-4	0.495	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24522002	3R_24522002_SNP [dm3] 3R_28696280_SNP [dm6]	C	T	2.092e^-4	0.495	START_GAINED htt UTR_5_PRIME htt DOWNSTREAM CG9990	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24522330	3R_24522330_SNP [dm3] 3R_28696608_SNP [dm6]	G	T	2.092e^-4	0.495	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18097239	2R_18097239_SNP [dm3] 2R_22209734_SNP [dm6]	T	C	2.102e^-4	0.495	NON_SYNONYMOUS_CODING CG3264
3L	6705760	3L_6705760_SNP [dm3] 3L_6712660_SNP [dm6]	G	T	2.102e^-4	0.495	DOWNSTREAM ple INTERGENIC
3L	14158797	3L_14158797_SNP [dm3] 3L_14165697_SNP [dm6]	T	G	2.113e^-4	0.495	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5735793	2R_5735793_SNP [dm3] 2R_9848288_SNP [dm6]	C	T	2.117e^-4	0.495	SYNONYMOUS_CODING CG1671 UPSTREAM Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9821968	2R_9821968_SNP [dm3] 2R_13934463_SNP [dm6]	G	A	2.119e^-4	0.495	INTRON shot	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_ttk
2R	805391	2R_805391_INS [dm3] 2R_4917886_INS [dm6]	A	AA	2.128e^-4	0.495	INTRON Ir41a
3L	13433426	3L_13433426_SNP [dm3] 3L_13440326_SNP [dm6]	G	C	2.135e^-4	0.495	NON_SYNONYMOUS_CODING CG10140 UPSTREAM CG14109
3R	9899474	3R_9899474_SNP [dm3] 3R_14073752_SNP [dm6]	C	G	2.137e^-4	0.495	INTRON foxo
3R	15569586	3R_15569586_SNP [dm3] 3R_19743864_SNP [dm6]	T	A	2.139e^-4	0.495	INTRON GluClalpha EXON CR43488
3L	14741122	3L_14741122_SNP [dm3] 3L_14748022_SNP [dm6]	A	G	2.142e^-4	0.495	UTR_3_PRIME CG42507 & 1 other DOWNSTREAM ome
2L	20712721	2L_20712721_SNP [dm3] 2L_20712721_SNP [dm6]	A	G	2.142e^-4	0.495	DOWNSTREAM CR44188 INTRON Hr38	TF binding site BDTNP1_TFBS_Med
X	17199656	X_17199656_SNP [dm3] X_17305623_SNP [dm6]	A	C	2.145e^-4	0.495	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
2L	5189232	2L_5189232_SNP [dm3] 2L_5189232_SNP [dm6]	C	T	2.150e^-4	0.495	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
3L	12088498	3L_12088498_SNP [dm3] 3L_12095398_SNP [dm6]	A	G	2.151e^-4	0.495	INTERGENIC
X	11252663	X_11252663_SNP [dm3] X_11358630_SNP [dm6]	G	A	2.153e^-4	0.495	UTR_3_PRIME dsh UPSTREAM Pa1	TF binding site BDTNP1_TFBS_dl
3L	19608212	3L_19608212_SNP [dm3] 3L_19615112_SNP [dm6]	T	G	2.154e^-4	0.495	NON_SYNONYMOUS_CODING l_3_76BDm
2L	2305413	2L_2305413_SNP [dm3] 2L_2305413_SNP [dm6]	C	T	2.155e^-4	0.495	INTERGENIC
2L	2305425	2L_2305425_SNP [dm3] 2L_2305425_SNP [dm6]	T	C	2.155e^-4	0.495	INTERGENIC
3R	9899571	3R_9899571_SNP [dm3] 3R_14073849_SNP [dm6]	G	A	2.158e^-4	0.495	INTRON foxo
3R	11788920	3R_11788920_SNP [dm3] 3R_15963198_SNP [dm6]	C	T	2.159e^-4	0.495	SYNONYMOUS_CODING CG4287 UPSTREAM CG5516	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	19969934	X_19969934_SNP [dm3] X_20075901_SNP [dm6]	T	C	2.161e^-4	0.495	INTERGENIC
3R	11921121	3R_11921121_SNP [dm3] 3R_16095399_SNP [dm6]	A	T	2.168e^-4	0.495	INTRON Mhcl
2R	7570023	2R_7570023_SNP [dm3] 2R_11682518_SNP [dm6]	T	G	2.172e^-4	0.495	INTRON Buffy
3R	21070005	3R_21070005_SNP [dm3] 3R_25244283_SNP [dm6]	A	G	2.181e^-4	0.495	SYNONYMOUS_CODING bam
2L	17340509	2L_17340509_SNP [dm3] 2L_17340509_SNP [dm6]	C	T	2.182e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7151877	3L_7151877_SNP [dm3] 3L_7158777_SNP [dm6]	A	G	2.187e^-4	0.495	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
2R	11633760	2R_11633760_SNP [dm3] 2R_15746255_SNP [dm6]	G	A	2.192e^-4	0.495	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8085986	2L_8085986_SNP [dm3] 2L_8085986_SNP [dm6]	A	C	2.192e^-4	0.495	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8085990	2L_8085990_SNP [dm3] 2L_8085990_SNP [dm6]	T	A	2.192e^-4	0.495	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26053750	3R_26053750_SNP [dm3] 3R_30228028_SNP [dm6]	A	G	2.197e^-4	0.495	INTERGENIC
3R	19987279	3R_19987279_SNP [dm3] 3R_24161557_SNP [dm6]	A	G	2.197e^-4	0.495	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14039174	3R_14039174_SNP [dm3] 3R_18213452_SNP [dm6]	G	A	2.198e^-4	0.495	NON_SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8081889	2L_8081889_SNP [dm3] 2L_8081889_SNP [dm6]	C	A	2.199e^-4	0.495	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19432663	3L_19432663_DEL [dm3] 3L_19439563_DEL [dm6]	GG	G	2.203e^-4	0.495	DOWNSTREAM CR45732 INTERGENIC
2L	4351006	2L_4351006_SNP [dm3] 2L_4351006_SNP [dm6]	A	T	2.207e^-4	0.495	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20001074	3L_20001074_DEL [dm3] 3L_20007974_DEL [dm6]	AA	A	2.208e^-4	0.495	INTRON kug	TF binding site mE1_TFBS_zfh1
3R	20776010	3R_20776010_SNP [dm3] 3R_24950288_SNP [dm6]	G	C	2.209e^-4	0.495	DOWNSTREAM CG13646 INTERGENIC
2R	12320460	2R_12320460_SNP [dm3] 2R_16432955_SNP [dm6]	T	C	2.214e^-4	0.495	DOWNSTREAM CG7848 INTRON CG4398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12320474	2R_12320474_SNP [dm3] 2R_16432969_SNP [dm6]	C	T	2.214e^-4	0.495	DOWNSTREAM CG7848 INTRON CG4398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12320485	2R_12320485_SNP [dm3] 2R_16432980_SNP [dm6]	T	G	2.214e^-4	0.495	DOWNSTREAM CG7848 INTRON CG4398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12320502	2R_12320502_SNP [dm3] 2R_16432997_SNP [dm6]	C	T	2.214e^-4	0.495	DOWNSTREAM CG7848 INTRON CG4398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18381073	3L_18381073_SNP [dm3] 3L_18387973_SNP [dm6]	C	G	2.217e^-4	0.495	INTERGENIC
2R	16549716	2R_16549716_SNP [dm3] 2R_20662211_SNP [dm6]	G	A	2.217e^-4	0.495	SYNONYMOUS_CODING CG13437 DOWNSTREAM Fem-1	TF binding site mE1_TFBS_cad
2R	16549734	2R_16549734_SNP [dm3] 2R_20662229_SNP [dm6]	G	C	2.217e^-4	0.495	SYNONYMOUS_CODING CG13437 DOWNSTREAM Fem-1	TF binding site mE1_TFBS_cad
3L	8541213	3L_8541213_SNP [dm3] 3L_8548113_SNP [dm6]	C	T	2.217e^-4	0.495	INTRON rhea	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	24283923	3R_24283923_SNP [dm3] 3R_28458201_SNP [dm6]	C	T	2.219e^-4	0.495	INTRON beat-VI
X	21326225	X_21326225_SNP [dm3] X_21455198_SNP [dm6]	A	C	2.224e^-4	0.495	INTRON CG42343
X	21326240	X_21326240_SNP [dm3] X_21455213_SNP [dm6]	A	T	2.224e^-4	0.495	INTRON CG42343
2L	20138701	2L_20138701_SNP [dm3] 2L_20138701_SNP [dm6]	A	T	2.230e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24523380	3R_24523380_SNP [dm3] 3R_28697658_SNP [dm6]	C	A	2.234e^-4	0.495	INTRON htt
3R	11001514	3R_11001514_INS [dm3] 3R_15175792_INS [dm6]	A	AA	2.234e^-4	0.495	UTR_3_PRIME Mf DOWNSTREAM Mf INTRON Mf & 1 other
2R	13505811	2R_13505811_SNP [dm3] 2R_17618306_SNP [dm6]	T	G	2.237e^-4	0.495	UPSTREAM CG44403 INTRON CG10936
X	17199645	X_17199645_INS [dm3] X_17305612_INS [dm6]	G	GTATATTTT	2.238e^-4	0.495	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
X	17199651	X_17199651_SNP [dm3] X_17305618_SNP [dm6]	A	T	2.238e^-4	0.495	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
X	17199670	X_17199670_INS [dm3] X_17305637_INS [dm6]	T	TAGT	2.238e^-4	0.495	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
X	17199674	X_17199674_SNP [dm3] X_17305641_SNP [dm6]	T	A	2.238e^-4	0.495	DOWNSTREAM CG5445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
2R	9891228	2R_9891228_SNP [dm3] 2R_14003723_SNP [dm6]	T	G	2.239e^-4	0.495	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21405258	3R_21405258_SNP [dm3] 3R_25579536_SNP [dm6]	T	C	2.242e^-4	0.495	INTRON msi
3R	18878268	3R_18878268_SNP [dm3] 3R_23052546_SNP [dm6]	G	C	2.242e^-4	0.495	SYNONYMOUS_CODING Gr94a INTRON p53	TF binding site mE1_TFBS_sens
3R	19514249	3R_19514249_DEL [dm3] 3R_23688527_DEL [dm6]	ACGACAACGATTTCACCTGG...	A	2.243e^-4	0.495	DOWNSTREAM CG10254 & 1 other INTERGENIC
2L	9313808	2L_9313808_SNP [dm3] 2L_9313808_SNP [dm6]	C	A	2.249e^-4	0.495	INTERGENIC
2L	8081508	2L_8081508_INS [dm3] 2L_8081508_INS [dm6]	A	AA	2.250e^-4	0.495	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14570692	2R_14570692_SNP [dm3] 2R_18683187_SNP [dm6]	C	T	2.251e^-4	0.495	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15755966	3L_15755966_SNP [dm3] 3L_15762866_SNP [dm6]	C	T	2.252e^-4	0.495	INTERGENIC
3L	2580460	3L_2580460_SNP [dm3] 3L_2580460_SNP [dm6]	G	A	2.255e^-4	0.495	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11917079	3R_11917079_SNP [dm3] 3R_16091357_SNP [dm6]	C	T	2.255e^-4	0.495	INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2R	15409784	2R_15409784_SNP [dm3] 2R_19522279_SNP [dm6]	C	T	2.256e^-4	0.495	UTR_3_PRIME sm
2L	782043	2L_782043_SNP [dm3] 2L_782043_SNP [dm6]	C	T	2.266e^-4	0.496	SYNONYMOUS_CODING Gr21a	TF binding site mE1_TFBS_cad
2L	782068	2L_782068_SNP [dm3] 2L_782068_SNP [dm6]	C	T	2.266e^-4	0.496	INTRON Gr21a	TF binding site mE1_TFBS_cad
3L	9461356	3L_9461356_SNP [dm3] 3L_9468256_SNP [dm6]	A	T	2.270e^-4	0.496	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9461373	3L_9461373_SNP [dm3] 3L_9468273_SNP [dm6]	A	G	2.270e^-4	0.496	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2551149	2L_2551149_SNP [dm3] 2L_2551149_SNP [dm6]	G	A	2.279e^-4	0.496	UTR_3_PRIME CG3515
3R	16753169	3R_16753169_SNP [dm3] 3R_20927447_SNP [dm6]	C	T	2.281e^-4	0.496	SYNONYMOUS_CODING hdly INTRON CG31191
3L	18915739	3L_18915739_SNP [dm3] 3L_18922639_SNP [dm6]	A	G	2.283e^-4	0.496	UTR_3_PRIME CG32204 UPSTREAM CG3819
X	15332004	X_15332004_SNP [dm3] X_15437971_SNP [dm6]	A	T	2.285e^-4	0.496	INTRON Cngl
2L	16546048	2L_16546048_DEL [dm3] 2L_16546048_DEL [dm6]	AGGTGTACGTA...	A	2.286e^-4	0.496	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	19097438	2R_19097438_INS [dm3] 2R_23209915_INS [dm6]	G	GG	2.289e^-4	0.496	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_hkb
2R	9823696	2R_9823696_SNP [dm3] 2R_13936191_SNP [dm6]	T	C	2.294e^-4	0.497	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8660124	3L_8660124_SNP [dm3] 3L_8667024_SNP [dm6]	G	T	2.301e^-4	0.497	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	4308673	3R_4308673_SNP [dm3] 3R_8482951_SNP [dm6]	T	A	2.303e^-4	0.497	INTERGENIC
3R	17952289	3R_17952289_MNP [dm3] 3R_22126567_MNP [dm6]	TAG	GGT	2.310e^-4	0.497	INTRON CG42390
3R	17952293	3R_17952293_SNP [dm3] 3R_22126571_SNP [dm6]	A	T	2.310e^-4	0.497	INTRON CG42390
X	7466523	X_7466523_SNP [dm3] X_7572490_SNP [dm6]	G	A	2.313e^-4	0.497	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb
2L	1073079	2L_1073079_SNP [dm3] 2L_1073079_SNP [dm6]	A	G	2.314e^-4	0.497	INTRON S
X	13682405	X_13682405_SNP [dm3] X_13788372_SNP [dm6]	C	T	2.315e^-4	0.497	INTRON inaE
3R	9899614	3R_9899614_SNP [dm3] 3R_14073892_SNP [dm6]	T	A	2.321e^-4	0.497	INTRON foxo
2R	9823674	2R_9823674_SNP [dm3] 2R_13936169_SNP [dm6]	T	A	2.323e^-4	0.497	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11396088	3R_11396088_SNP [dm3] 3R_15570366_SNP [dm6]	C	A	2.323e^-4	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15262224	3R_15262224_SNP [dm3] 3R_19436502_SNP [dm6]	G	A	2.327e^-4	0.497	INTRON CG31221
X	3477711	X_3477711_SNP [dm3] X_3583678_SNP [dm6]	C	T	2.327e^-4	0.497	INTRON AstA-R1
2R	6058661	2R_6058661_SNP [dm3] 2R_10171156_SNP [dm6]	A	T	2.333e^-4	0.498	INTRON KCNQ
X	3349575	X_3349575_SNP [dm3] X_3455542_SNP [dm6]	T	G	2.336e^-4	0.498	INTRON CR44999
X	15153863	X_15153863_SNP [dm3] X_15259830_SNP [dm6]	A	C	2.347e^-4	0.5	INTERGENIC
X	3349106	X_3349106_SNP [dm3] X_3455073_SNP [dm6]	A	T	2.360e^-4	0.501	INTRON CR44999
X	13248547	X_13248547_SNP [dm3] X_13354514_SNP [dm6]	C	G	2.361e^-4	0.501	INTERGENIC
3R	14383091	3R_14383091_SNP [dm3] 3R_18557369_SNP [dm6]	A	G	2.364e^-4	0.501	INTERGENIC
3R	20336985	3R_20336985_SNP [dm3] 3R_24511263_SNP [dm6]	T	C	2.366e^-4	0.501	INTRON nAChRbeta2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18450653	2L_18450653_SNP [dm3] 2L_18450653_SNP [dm6]	G	A	2.376e^-4	0.503	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	9112672	2L_9112672_SNP [dm3] 2L_9112672_SNP [dm6]	T	G	2.381e^-4	0.503	INTRON Or30a
2L	9112676	2L_9112676_SNP [dm3] 2L_9112676_SNP [dm6]	T	A	2.381e^-4	0.503	INTRON Or30a
3R	18492163	3R_18492163_SNP [dm3] 3R_22666441_SNP [dm6]	T	C	2.397e^-4	0.505	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	3896786	2L_3896786_SNP [dm3] 2L_3896786_SNP [dm6]	A	G	2.399e^-4	0.505	UPSTREAM capu INTRON capu
3R	19987281	3R_19987281_SNP [dm3] 3R_24161559_SNP [dm6]	C	G	2.405e^-4	0.506	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2873702	X_2873702_SNP [dm3] X_2979669_SNP [dm6]	T	C	2.408e^-4	0.506	INTRON kirre	regulatory region REDfly_CRMs
3L	12639918	3L_12639918_SNP [dm3] 3L_12646818_SNP [dm6]	G	T	2.414e^-4	0.506	EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19987461	3R_19987461_SNP [dm3] 3R_24161739_SNP [dm6]	C	T	2.418e^-4	0.506	START_GAINED CG6182 UTR_5_PRIME CG6182 UPSTREAM Myo95E	TF binding site BDTNP1_TFBS_dl
3R	11916362	3R_11916362_SNP [dm3] 3R_16090640_SNP [dm6]	C	G	2.422e^-4	0.506	INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10235502	3L_10235502_DEL [dm3] 3L_10242402_DEL [dm6]	AA	A	2.425e^-4	0.506	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	19464667	3R_19464667_SNP [dm3] 3R_23638945_SNP [dm6]	A	C	2.425e^-4	0.506	INTRON CG31145
3R	19465231	3R_19465231_SNP [dm3] 3R_23639509_SNP [dm6]	G	T	2.430e^-4	0.506	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24270768	3R_24270768_SNP [dm3] 3R_28445046_SNP [dm6]	G	T	2.432e^-4	0.506	INTRON beat-VI
2L	17338524	2L_17338524_SNP [dm3] 2L_17338524_SNP [dm6]	T	G	2.433e^-4	0.506	INTERGENIC
2L	20138692	2L_20138692_SNP [dm3] 2L_20138692_SNP [dm6]	T	A	2.433e^-4	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15153897	X_15153897_SNP [dm3] X_15259864_SNP [dm6]	C	A	2.442e^-4	0.507	INTERGENIC
3L	12725013	3L_12725013_SNP [dm3] 3L_12731913_SNP [dm6]	A	G	2.445e^-4	0.507	INTERGENIC
3R	24522805	3R_24522805_SNP [dm3] 3R_28697083_SNP [dm6]	A	G	2.445e^-4	0.507	SYNONYMOUS_CODING htt
2L	2746110	2L_2746110_SNP [dm3] 2L_2746110_SNP [dm6]	C	T	2.453e^-4	0.508	SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	13963293	X_13963293_DEL [dm3] X_14069260_DEL [dm6]	TTTA	T	2.457e^-4	0.508	INTERGENIC
X	13028062	X_13028062_SNP [dm3] X_13134029_SNP [dm6]	T	C	2.461e^-4	0.509	SYNONYMOUS_CODING MFS10 UTR_3_PRIME CG15717	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10283525	3L_10283525_SNP [dm3] 3L_10290425_SNP [dm6]	C	A	2.473e^-4	0.511	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	2305839	2L_2305839_SNP [dm3] 2L_2305839_SNP [dm6]	C	T	2.487e^-4	0.513	INTERGENIC
3L	12747463	3L_12747463_SNP [dm3] 3L_12754363_SNP [dm6]	G	A	2.488e^-4	0.513	UPSTREAM CG32113 DOWNSTREAM CG10984 INTRON CG10973	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11556204	3L_11556204_SNP [dm3] 3L_11563104_SNP [dm6]	A	T	2.494e^-4	0.513	SPLICE_SITE_REGION CG7394 UPSTREAM Mob2 INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1321035	2L_1321035_SNP [dm3] 2L_1321035_SNP [dm6]	G	A	2.502e^-4	0.514	INTERGENIC
X	21383283	X_21383283_SNP [dm3] X_21512256_SNP [dm6]	C	T	2.509e^-4	0.514	INTRON CR45082
3L	1605362	3L_1605362_SNP [dm3] 3L_1605362_SNP [dm6]	C	T	2.514e^-4	0.514	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3R	22648332	3R_22648332_SNP [dm3] 3R_26822610_SNP [dm6]	C	T	2.516e^-4	0.514	INTRON Tl
3R	26196600	3R_26196600_SNP [dm3] 3R_30370878_SNP [dm6]	A	G	2.520e^-4	0.514	UTR_3_PRIME hdc
3R	16830909	3R_16830909_SNP [dm3] 3R_21005187_SNP [dm6]	C	G	2.523e^-4	0.514	UTR_3_PRIME CG10827 INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4393244	3L_4393244_SNP [dm3] 3L_4393244_SNP [dm6]	A	T	2.523e^-4	0.514	INTRON slow
X	3349271	X_3349271_SNP [dm3] X_3455238_SNP [dm6]	T	C	2.523e^-4	0.514	INTRON CR44999
2L	15772165	2L_15772165_SNP [dm3] 2L_15772165_SNP [dm6]	A	G	2.526e^-4	0.514	SYNONYMOUS_CODING CG31826
2L	4508588	2L_4508588_SNP [dm3] 2L_4508588_SNP [dm6]	T	A	2.527e^-4	0.514	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15153858	X_15153858_SNP [dm3] X_15259825_SNP [dm6]	G	T	2.536e^-4	0.515	INTERGENIC
3L	12725014	3L_12725014_SNP [dm3] 3L_12731914_SNP [dm6]	A	T	2.537e^-4	0.515	INTERGENIC
X	2106884	X_2106884_SNP [dm3] X_2212851_SNP [dm6]	T	A	2.538e^-4	0.515	UPSTREAM msta INTRON msta
3R	24671117	3R_24671117_SNP [dm3] 3R_28845395_SNP [dm6]	C	T	2.541e^-4	0.515	UTR_5_PRIME spg UPSTREAM Apc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9461629	3L_9461629_SNP [dm3] 3L_9468529_SNP [dm6]	A	C	2.550e^-4	0.516	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15153931	X_15153931_SNP [dm3] X_15259898_SNP [dm6]	C	T	2.554e^-4	0.516	INTERGENIC
3R	15262506	3R_15262506_SNP [dm3] 3R_19436784_SNP [dm6]	C	T	2.556e^-4	0.516	INTRON CG31221
2R	15037296	2R_15037296_SNP [dm3] 2R_19149791_SNP [dm6]	T	G	2.562e^-4	0.517	INTRON ena
3R	3290861	3R_3290861_SNP [dm3] 3R_7465139_SNP [dm6]	T	A	2.564e^-4	0.517	INTERGENIC
2L	15223695	2L_15223695_INS [dm3] 2L_15223695_INS [dm6]	A	AA	2.565e^-4	0.517	INTERGENIC
3L	12546185	3L_12546185_SNP [dm3] 3L_12553085_SNP [dm6]	A	C	2.569e^-4	0.517	INTRON sowah
2L	9517238	2L_9517238_SNP [dm3] 2L_9517238_SNP [dm6]	C	T	2.574e^-4	0.517	SYNONYMOUS_CODING CG33298
X	6833373	X_6833373_SNP [dm3] X_6939340_SNP [dm6]	G	C	2.581e^-4	0.518	INTRON CG14431
3R	13941462	3R_13941462_SNP [dm3] 3R_18115740_SNP [dm6]	A	G	2.587e^-4	0.518	INTRON sr
X	6261364	X_6261364_SNP [dm3] X_6367331_SNP [dm6]	G	A	2.590e^-4	0.518	INTRON Marf
3R	15262351	3R_15262351_SNP [dm3] 3R_19436629_SNP [dm6]	C	T	2.591e^-4	0.518	INTRON CG31221
3R	19987302	3R_19987302_SNP [dm3] 3R_24161580_SNP [dm6]	T	A	2.594e^-4	0.518	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2708129	X_2708129_SNP [dm3] X_2814096_SNP [dm6]	A	G	2.596e^-4	0.518	INTRON kirre
3R	14609649	3R_14609649_SNP [dm3] 3R_18783927_SNP [dm6]	C	T	2.598e^-4	0.518	INTRON CG7720
2R	5736819	2R_5736819_SNP [dm3] 2R_9849314_SNP [dm6]	G	A	2.600e^-4	0.518	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
3R	23627872	3R_23627872_SNP [dm3] 3R_27802150_SNP [dm6]	G	C	2.604e^-4	0.518	INTRON CG34353
3L	6160191	3L_6160191_SNP [dm3] 3L_6167091_SNP [dm6]	T	G	2.608e^-4	0.518	UTR_3_PRIME CG10289 DOWNSTREAM CG10289
3L	1722207	3L_1722207_SNP [dm3] 3L_1722207_SNP [dm6]	A	T	2.609e^-4	0.518	SYNONYMOUS_CODING CG18171 INTRON drpr
3L	13433407	3L_13433407_SNP [dm3] 3L_13440307_SNP [dm6]	G	C	2.614e^-4	0.518	NON_SYNONYMOUS_CODING CG10140 UPSTREAM CG14109
2L	14784316	2L_14784316_SNP [dm3] 2L_14784316_SNP [dm6]	T	A	2.614e^-4	0.518	INTRON CG18636
2R	9805697	2R_9805697_SNP [dm3] 2R_13918192_SNP [dm6]	C	T	2.616e^-4	0.518	INTRON shot
X	21446065	X_21446065_SNP [dm3] X_21575038_SNP [dm6]	G	C	2.619e^-4	0.518	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	19128472	2R_19128472_SNP [dm3] 2R_23240949_SNP [dm6]	C	T	2.627e^-4	0.518	INTERGENIC
X	1160162	X_1160162_DEL [dm3] X_1266129_DEL [dm6]	TAT	T	2.628e^-4	0.518	INTRON Atf3
3L	5228704	3L_5228704_SNP [dm3] 3L_5235604_SNP [dm6]	C	T	2.634e^-4	0.518	SYNONYMOUS_CODING CG4669 INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18330189	3L_18330189_SNP [dm3] 3L_18337089_SNP [dm6]	A	T	2.634e^-4	0.518	INTERGENIC
2R	2994151	2R_2994151_SNP [dm3] 2R_7106646_SNP [dm6]	G	A	2.642e^-4	0.518	UPSTREAM esn INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24288639	3R_24288639_SNP [dm3] 3R_28462917_SNP [dm6]	T	C	2.645e^-4	0.518	INTRON beat-VI
3R	11931679	3R_11931679_SNP [dm3] 3R_16105957_SNP [dm6]	G	A	2.648e^-4	0.518	DOWNSTREAM Akt1 INTERGENIC
2L	4091932	2L_4091932_SNP [dm3] 2L_4091932_SNP [dm6]	G	C	2.653e^-4	0.518	INTRON ed	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8840702	X_8840702_SNP [dm3] X_8946669_SNP [dm6]	T	G	2.657e^-4	0.518	INTRON rdgA
2L	14001860	2L_14001860_SNP [dm3] 2L_14001860_SNP [dm6]	A	G	2.659e^-4	0.518	UPSTREAM rk INTERGENIC
3L	19146615	3L_19146615_SNP [dm3] 3L_19153515_SNP [dm6]	A	G	2.660e^-4	0.518	INTRON fz2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20399637	3R_20399637_SNP [dm3] 3R_24573915_SNP [dm6]	A	T	2.660e^-4	0.518	INTRON CG13624
3R	19057324	3R_19057324_SNP [dm3] 3R_23231602_SNP [dm6]	T	C	2.672e^-4	0.518	INTRON CG4467	TF binding site mE1_TFBS_cad
3L	6913875	3L_6913875_SNP [dm3] 3L_6920775_SNP [dm6]	G	A	2.678e^-4	0.518	INTERGENIC
3L	6913890	3L_6913890_SNP [dm3] 3L_6920790_SNP [dm6]	T	C	2.678e^-4	0.518	INTERGENIC
3L	6913926	3L_6913926_SNP [dm3] 3L_6920826_SNP [dm6]	A	T	2.678e^-4	0.518	INTERGENIC
3L	6913949	3L_6913949_SNP [dm3] 3L_6920849_SNP [dm6]	G	A	2.678e^-4	0.518	INTERGENIC
3L	6913977	3L_6913977_SNP [dm3] 3L_6920877_SNP [dm6]	A	T	2.678e^-4	0.518	INTERGENIC
3L	6913981	3L_6913981_SNP [dm3] 3L_6920881_SNP [dm6]	A	C	2.678e^-4	0.518	INTERGENIC
3L	6913991	3L_6913991_SNP [dm3] 3L_6920891_SNP [dm6]	C	T	2.678e^-4	0.518	INTERGENIC
3L	6914014	3L_6914014_SNP [dm3] 3L_6920914_SNP [dm6]	T	C	2.678e^-4	0.518	INTERGENIC
3R	21027861	3R_21027861_SNP [dm3] 3R_25202139_SNP [dm6]	T	A	2.682e^-4	0.518	INTRON CG13654 & 1 other
2L	5805482	2L_5805482_SNP [dm3] 2L_5805482_SNP [dm6]	C	T	2.683e^-4	0.518	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	18302844	3R_18302844_SNP [dm3] 3R_22477122_SNP [dm6]	T	C	2.697e^-4	0.518	INTRON Nrx-1
2L	10482275	2L_10482275_SNP [dm3] 2L_10482275_SNP [dm6]	T	A	2.697e^-4	0.518	INTRON RluA-2	TF binding site mE1_TFBS_sens
3R	24274227	3R_24274227_SNP [dm3] 3R_28448505_SNP [dm6]	T	A	2.700e^-4	0.518	INTRON beat-VI
3R	24274476	3R_24274476_SNP [dm3] 3R_28448754_SNP [dm6]	T	A	2.700e^-4	0.518	INTRON beat-VI
3R	24279425	3R_24279425_SNP [dm3] 3R_28453703_SNP [dm6]	G	T	2.700e^-4	0.518	INTRON beat-VI
3R	24280677	3R_24280677_SNP [dm3] 3R_28454955_SNP [dm6]	G	T	2.700e^-4	0.518	INTRON beat-VI
X	4418686	X_4418686_SNP [dm3] X_4524653_SNP [dm6]	G	T	2.703e^-4	0.518	INTRON CR32773
2L	12369463	2L_12369463_SNP [dm3] 2L_12369463_SNP [dm6]	C	T	2.708e^-4	0.518	UPSTREAM bru-2 INTRON bru-2
3L	9461531	3L_9461531_SNP [dm3] 3L_9468431_SNP [dm6]	T	A	2.712e^-4	0.518	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16178387	X_16178387_SNP [dm3] X_16284354_SNP [dm6]	G	A	2.713e^-4	0.518	SYNONYMOUS_CODING eas UTR_3_PRIME eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	19393232	2L_19393232_DEL [dm3] 2L_19393232_DEL [dm6]	CC	C	2.720e^-4	0.519	UPSTREAM CG31798 INTRON CG17544	TF binding site mE1_TFBS_bab1
3R	20396340	3R_20396340_SNP [dm3] 3R_24570618_SNP [dm6]	C	A	2.723e^-4	0.519	INTRON CG13624
3L	12738880	3L_12738880_SNP [dm3] 3L_12745780_SNP [dm6]	C	T	2.727e^-4	0.519	NON_SYNONYMOUS_CODING CG32109 DOWNSTREAM CG32112 & 1 other
X	3401997	X_3401997_SNP [dm3] X_3507964_SNP [dm6]	A	G	2.737e^-4	0.52	UTR_3_PRIME CG32791 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9883359	3L_9883359_SNP [dm3] 3L_9890259_SNP [dm6]	C	A	2.751e^-4	0.52	INTRON CalpB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	4915224	2R_4915224_SNP [dm3] 2R_9027719_SNP [dm6]	A	G	2.752e^-4	0.52	INTRON CG8170
3R	9899627	3R_9899627_SNP [dm3] 3R_14073905_SNP [dm6]	T	C	2.753e^-4	0.52	INTRON foxo
2R	9917020	2R_9917020_SNP [dm3] 2R_14029515_SNP [dm6]	A	C	2.756e^-4	0.52	DOWNSTREAM CG18371 INTRON mam
3R	12383837	3R_12383837_SNP [dm3] 3R_16558115_SNP [dm6]	A	G	2.757e^-4	0.52	INTRON CG42342
3L	6541488	3L_6541488_SNP [dm3] 3L_6548388_SNP [dm6]	G	A	2.764e^-4	0.52	INTRON sfl
3L	6541552	3L_6541552_SNP [dm3] 3L_6548452_SNP [dm6]	C	T	2.764e^-4	0.52	INTRON sfl
2R	15418493	2R_15418493_SNP [dm3] 2R_19530988_SNP [dm6]	C	A	2.765e^-4	0.52	INTRON sm	TF binding site mE1_TFBS_sens
3L	3527312	3L_3527312_SNP [dm3] 3L_3527312_SNP [dm6]	T	C	2.770e^-4	0.52	INTRON Eip63E
2R	12651132	2R_12651132_SNP [dm3] 2R_16763627_SNP [dm6]	C	G	2.777e^-4	0.52	INTRON unc-104
3R	19987288	3R_19987288_SNP [dm3] 3R_24161566_SNP [dm6]	T	G	2.784e^-4	0.52	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3973146	3L_3973146_SNP [dm3] 3L_3973146_SNP [dm6]	G	A	2.787e^-4	0.52	SYNONYMOUS_CODING CG43915	regulatory region REDfly_CRMs
3R	17450965	3R_17450965_SNP [dm3] 3R_21625243_SNP [dm6]	C	T	2.789e^-4	0.52	SYNONYMOUS_CODING E2f	TF binding site mE1_TFBS_cad
3R	23590606	3R_23590606_INS [dm3] 3R_27764884_INS [dm6]	G	GG	2.791e^-4	0.52	INTERGENIC
2L	5884358	2L_5884358_SNP [dm3] 2L_5884358_SNP [dm6]	A	G	2.799e^-4	0.52	UTR_3_PRIME Sfp26Ac UPSTREAM CG43185 DOWNSTREAM CG44574
3L	17877979	3L_17877979_SNP [dm3] 3L_17884879_SNP [dm6]	G	A	2.805e^-4	0.52	UPSTREAM CG5506 DOWNSTREAM CR42548 INTERGENIC
3L	13188878	3L_13188878_SNP [dm3] 3L_13195778_SNP [dm6]	T	C	2.807e^-4	0.52	INTERGENIC
3L	8925225	3L_8925225_SNP [dm3] 3L_8932125_SNP [dm6]	G	T	2.812e^-4	0.52	DOWNSTREAM CG43783 & 1 other INTERGENIC
2R	7567023	2R_7567023_SNP [dm3] 2R_11679518_SNP [dm6]	T	C	2.812e^-4	0.52	UTR_5_PRIME Buffy UPSTREAM Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	11891900	3R_11891900_SNP [dm3] 3R_16066178_SNP [dm6]	T	C	2.816e^-4	0.52	INTRON CG10185	TF binding site mE1_TFBS_cad
2R	6789942	2R_6789942_SNP [dm3] 2R_10902437_SNP [dm6]	G	C	2.818e^-4	0.52	INTERGENIC
3R	4978794	3R_4978794_SNP [dm3] 3R_9153072_SNP [dm6]	A	T	2.820e^-4	0.52	INTRON pum

By genomic position
Variant impact
Gene name

Microbiota_OTU007 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results