DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.130e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3448 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	4243979	3R_4243979_SNP [dm3] 3R_8418257_SNP [dm6]	T	G	2.976e^-10	2.751e^-4	INTRON CG45263
3R	4244453	3R_4244453_SNP [dm3] 3R_8418731_SNP [dm6]	G	A	4.437e^-10	2.751e^-4	INTRON CG45263
3R	4244456	3R_4244456_DEL [dm3] 3R_8418734_DEL [dm6]	AGACAACTATCATTTGCTTT...	A	4.437e^-10	2.751e^-4	INTRON CG45263
3R	4254654	3R_4254654_SNP [dm3] 3R_8428932_SNP [dm6]	T	A	6.222e^-10	2.894e^-4	INTRON CG45263
3R	4249440	3R_4249440_SNP [dm3] 3R_8423718_SNP [dm6]	A	T	3.098e^-9	0.001	INTRON CG45263
3R	4249357	3R_4249357_SNP [dm3] 3R_8423635_SNP [dm6]	G	C	3.355e^-9	0.001	INTRON CG45263
2R	11750561	2R_11750561_SNP [dm3] 2R_15863056_SNP [dm6]	T	G	4.815e^-9	0.001	UPSTREAM Gpo-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4244441	3R_4244441_DEL [dm3] 3R_8418719_DEL [dm6]	GATACAGCAAA...	G	6.669e^-9	0.002	INTRON CG45263
2L	13437368	2L_13437368_SNP [dm3] 2L_13437368_SNP [dm6]	A	G	8.817e^-9	0.002	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	20531806	2L_20531806_DEL [dm3] 2L_20531806_DEL [dm6]	AA	A	1.860e^-8	0.003	UTR_3_PRIME CG44270
2R	16498623	2R_16498623_SNP [dm3] 2R_20611118_SNP [dm6]	G	T	2.160e^-8	0.004	INTRON Hil
2L	13071572	2L_13071572_SNP [dm3] 2L_13071572_SNP [dm6]	A	T	2.390e^-8	0.004	INTERGENIC
3R	4241479	3R_4241479_SNP [dm3] 3R_8415757_SNP [dm6]	C	T	3.390e^-8	0.005	INTRON CG45263
3R	4252841	3R_4252841_SNP [dm3] 3R_8427119_SNP [dm6]	T	C	4.200e^-8	0.005	INTRON CG45263
2L	9485911	2L_9485911_SNP [dm3] 2L_9485911_SNP [dm6]	C	T	4.332e^-8	0.005	INTERGENIC
3R	4239087	3R_4239087_SNP [dm3] 3R_8413365_SNP [dm6]	G	C	6.477e^-8	0.008	INTRON CG45263
3R	4239795	3R_4239795_SNP [dm3] 3R_8414073_SNP [dm6]	C	T	9.054e^-8	0.01	INTRON CG45263
3L	4449309	3L_4449309_SNP [dm3] 3L_4449309_SNP [dm6]	T	C	1.089e^-7	0.011	INTERGENIC
3R	9817421	3R_9817421_DEL [dm3] 3R_13991699_DEL [dm6]	AA	A	1.158e^-7	0.011	INTRON rdx
2L	19833264	2L_19833264_SNP [dm3] 2L_19833264_SNP [dm6]	A	G	1.262e^-7	0.012	INTRON sick
3R	4225435	3R_4225435_SNP [dm3] 3R_8399713_SNP [dm6]	C	T	1.391e^-7	0.012	INTRON CG45263
3R	5468480	3R_5468480_SNP [dm3] 3R_9642758_SNP [dm6]	T	C	1.857e^-7	0.016	INTRON Dh44
2L	20571051	2L_20571051_SNP [dm3] 2L_20571051_SNP [dm6]	G	C	2.345e^-7	0.018	INTRON CR45347
3R	5474860	3R_5474860_SNP [dm3] 3R_9649138_SNP [dm6]	A	T	2.379e^-7	0.018	NON_SYNONYMOUS_CODING Dh44
2R	7022382	2R_7022382_SNP [dm3] 2R_11134877_SNP [dm6]	T	A	2.653e^-7	0.019	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	4955554	3R_4955554_SNP [dm3] 3R_9129832_SNP [dm6]	G	A	2.760e^-7	0.019	INTRON pum
2L	19833109	2L_19833109_SNP [dm3] 2L_19833109_SNP [dm6]	G	T	2.764e^-7	0.019	INTRON sick
2L	10200111	2L_10200111_SNP [dm3] 2L_10200111_SNP [dm6]	A	G	3.113e^-7	0.02	SYNONYMOUS_CODING Ripalpha UPSTREAM Sur & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11892860	2L_11892860_SNP [dm3] 2L_11892860_SNP [dm6]	T	G	3.114e^-7	0.02	INTRON Pde1c
3L	20078602	3L_20078602_SNP [dm3] 3L_20085502_SNP [dm6]	G	A	3.813e^-7	0.023	INTRON sNPF-R
3R	4248989	3R_4248989_SNP [dm3] 3R_8423267_SNP [dm6]	C	G	3.914e^-7	0.023	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20641769	2L_20641769_SNP [dm3] 2L_20641769_SNP [dm6]	G	C	4.216e^-7	0.025	UTR_3_PRIME Sfp38D DOWNSTREAM CG17470 & 1 other
2R	10860126	2R_10860126_SNP [dm3] 2R_14972621_SNP [dm6]	T	C	4.648e^-7	0.026	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20535232	2L_20535232_DEL [dm3] 2L_20535232_DEL [dm6]	TTT	G	4.690e^-7	0.026	INTERGENIC
X	10813791	X_10813791_SNP [dm3] X_10919758_SNP [dm6]	A	C	5.099e^-7	0.027	INTRON CG43901	TF binding site BDTNP1_TFBS_dl
X	10812640	X_10812640_SNP [dm3] X_10918607_SNP [dm6]	C	G	5.517e^-7	0.028	INTRON CG43901	TF binding site mE1_TFBS_cad
3R	4225439	3R_4225439_DEL [dm3] 3R_8399717_DEL [dm6]	TA	T	5.634e^-7	0.028	INTRON CG45263
3R	5473945	3R_5473945_SNP [dm3] 3R_9648223_SNP [dm6]	C	T	5.931e^-7	0.028	INTRON Dh44
X	15325839	X_15325839_SNP [dm3] X_15431806_SNP [dm6]	A	C	5.953e^-7	0.028	INTRON Cngl
X	10811040	X_10811040_SNP [dm3] X_10917007_SNP [dm6]	A	C	6.254e^-7	0.029	SYNONYMOUS_CODING CG43901	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4249875	3R_4249875_SNP [dm3] 3R_8424153_SNP [dm6]	G	C	6.302e^-7	0.029	INTRON CG45263
2L	14245853	2L_14245853_SNP [dm3] 2L_14245853_SNP [dm6]	G	A	6.591e^-7	0.029	INTERGENIC
3R	4348621	3R_4348621_SNP [dm3] 3R_8522899_SNP [dm6]	A	T	6.695e^-7	0.029	NON_SYNONYMOUS_CODING CG31454
2L	9485973	2L_9485973_SNP [dm3] 2L_9485973_SNP [dm6]	T	A	7.013e^-7	0.03	INTERGENIC
2R	4784166	2R_4784166_SNP [dm3] 2R_8896661_SNP [dm6]	G	A	7.301e^-7	0.03	SYNONYMOUS_CODING Sec31	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4252790	3R_4252790_SNP [dm3] 3R_8427068_SNP [dm6]	T	C	7.390e^-7	0.03	INTRON CG45263
X	10812753	X_10812753_SNP [dm3] X_10918720_SNP [dm6]	T	C	7.704e^-7	0.03	INTRON CG43901
3R	5475718	3R_5475718_SNP [dm3] 3R_9649996_SNP [dm6]	G	A	8.460e^-7	0.033	UTR_3_PRIME Dh44
3R	4239799	3R_4239799_SNP [dm3] 3R_8414077_SNP [dm6]	T	A	8.774e^-7	0.033	INTRON CG45263
2L	15863957	2L_15863957_SNP [dm3] 2L_15863957_SNP [dm6]	G	C	8.885e^-7	0.033	DOWNSTREAM CR42791 & 1 other INTERGENIC
2R	12010657	2R_12010657_SNP [dm3] 2R_16123152_SNP [dm6]	G	T	9.063e^-7	0.033	UPSTREAM CG30095 DOWNSTREAM Jhe INTERGENIC
3L	14755656	3L_14755656_SNP [dm3] 3L_14762556_SNP [dm6]	G	T	9.873e^-7	0.035	UPSTREAM CG33260 INTRON CG9384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16146855	X_16146855_SNP [dm3] X_16252822_SNP [dm6]	C	T	1.028e^-6	0.036	INTERGENIC
3R	4867877	3R_4867877_SNP [dm3] 3R_9042155_SNP [dm6]	G	T	1.110e^-6	0.038	UTR_3_PRIME hyx DOWNSTREAM Nmdmc
3R	8358365	3R_8358365_SNP [dm3] 3R_12532643_SNP [dm6]	G	C	1.140e^-6	0.038	INTRON Octbeta3R
3R	5472939	3R_5472939_INS [dm3] 3R_9647217_INS [dm6]	A	AA	1.170e^-6	0.038	INTRON Dh44
2L	17963860	2L_17963860_SNP [dm3] 2L_17963860_SNP [dm6]	T	C	1.191e^-6	0.038	INTRON btv & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	19833135	2L_19833135_SNP [dm3] 2L_19833135_SNP [dm6]	A	G	1.200e^-6	0.038	INTRON sick
3R	5156128	3R_5156128_SNP [dm3] 3R_9330406_SNP [dm6]	A	G	1.278e^-6	0.038	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
3R	5156140	3R_5156140_SNP [dm3] 3R_9330418_SNP [dm6]	C	A	1.278e^-6	0.038	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
3R	5156177	3R_5156177_SNP [dm3] 3R_9330455_SNP [dm6]	A	G	1.278e^-6	0.038	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
3R	5156198	3R_5156198_SNP [dm3] 3R_9330476_SNP [dm6]	A	T	1.278e^-6	0.038	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2R	15312220	2R_15312220_SNP [dm3] 2R_19424715_SNP [dm6]	G	T	1.282e^-6	0.038	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	5472884	3R_5472884_SNP [dm3] 3R_9647162_SNP [dm6]	T	C	1.314e^-6	0.038	INTRON Dh44
3R	5472937	3R_5472937_SNP [dm3] 3R_9647215_SNP [dm6]	G	A	1.390e^-6	0.039	INTRON Dh44
2L	18023481	2L_18023481_SNP [dm3] 2L_18023481_SNP [dm6]	C	T	1.398e^-6	0.039	INTRON rdo
3R	5477861	3R_5477861_SNP [dm3] 3R_9652139_SNP [dm6]	G	A	1.480e^-6	0.041	DOWNSTREAM CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
2L	7839406	2L_7839406_INS [dm3] 2L_7839406_INS [dm6]	T	TCGGTT	1.651e^-6	0.044	DOWNSTREAM CR43100 INTERGENIC
3R	5477233	3R_5477233_SNP [dm3] 3R_9651511_SNP [dm6]	G	T	1.662e^-6	0.044	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
3R	5156176	3R_5156176_SNP [dm3] 3R_9330454_SNP [dm6]	A	G	1.707e^-6	0.044	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
3R	5464454	3R_5464454_SNP [dm3] 3R_9638732_SNP [dm6]	C	T	1.714e^-6	0.044	INTRON Dh44
X	11267803	X_11267803_SNP [dm3] X_11373770_SNP [dm6]	G	A	1.738e^-6	0.044	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7643704	2L_7643704_SNP [dm3] 2L_7643704_SNP [dm6]	A	G	1.751e^-6	0.044	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
2R	17306363	2R_17306363_SNP [dm3] 2R_21418858_SNP [dm6]	T	A	1.763e^-6	0.044	INTRON Sdc
3R	4257485	3R_4257485_SNP [dm3] 3R_8431763_SNP [dm6]	C	A	1.796e^-6	0.044	INTRON CG45263
3L	4462398	3L_4462398_SNP [dm3] 3L_4462398_SNP [dm6]	T	C	1.809e^-6	0.044	UPSTREAM CG15023 DOWNSTREAM CG15024 INTERGENIC
3R	4257601	3R_4257601_SNP [dm3] 3R_8431879_SNP [dm6]	C	T	1.862e^-6	0.044	INTRON CG45263
3R	4257602	3R_4257602_SNP [dm3] 3R_8431880_SNP [dm6]	G	T	1.862e^-6	0.044	INTRON CG45263
3L	3893381	3L_3893381_SNP [dm3] 3L_3893381_SNP [dm6]	C	T	1.899e^-6	0.045	UPSTREAM snRNA:U11 INTRON Fie
3R	5156196	3R_5156196_SNP [dm3] 3R_9330474_SNP [dm6]	C	A	1.944e^-6	0.045	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2L	20571642	2L_20571642_SNP [dm3] 2L_20571642_SNP [dm6]	G	A	1.987e^-6	0.045	INTRON CR45347
X	10812644	X_10812644_SNP [dm3] X_10918611_SNP [dm6]	G	A	1.990e^-6	0.045	INTRON CG43901	TF binding site mE1_TFBS_cad
2L	2867778	2L_2867778_SNP [dm3] 2L_2867778_SNP [dm6]	T	C	2.149e^-6	0.048	UTR_3_PRIME CG2991 DOWNSTREAM CG31694
3R	5474426	3R_5474426_SNP [dm3] 3R_9648704_SNP [dm6]	A	T	2.157e^-6	0.048	INTRON Dh44
3R	5429744	3R_5429744_SNP [dm3] 3R_9604022_SNP [dm6]	G	T	2.283e^-6	0.05	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
3L	20550655	3L_20550655_SNP [dm3] 3L_20557555_SNP [dm6]	G	A	2.374e^-6	0.051	INTERGENIC
3L	5478981	3L_5478981_SNP [dm3] 3L_5485881_SNP [dm6]	G	T	2.632e^-6	0.056	INTERGENIC
2L	13147743	2L_13147743_SNP [dm3] 2L_13147743_SNP [dm6]	T	C	2.733e^-6	0.058	DOWNSTREAM CR44199 INTERGENIC
2R	10603166	2R_10603166_SNP [dm3] 2R_14715661_SNP [dm6]	A	C	2.790e^-6	0.058	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17567744	2R_17567744_SNP [dm3] 2R_21680239_SNP [dm6]	A	G	2.825e^-6	0.058	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4579333	3R_4579333_SNP [dm3] 3R_8753611_SNP [dm6]	T	C	2.890e^-6	0.059	NON_SYNONYMOUS_CODING CG8223 UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 UPSTREAM CG34135 & 1 other DOWNSTREAM CG11768	TF binding site mE1_TFBS_cad
2L	20789742	2L_20789742_SNP [dm3] 2L_20789742_SNP [dm6]	C	T	2.957e^-6	0.06	SYNONYMOUS_CODING vari DOWNSTREAM Pomp	TF binding site mE1_TFBS_sens
3R	4748701	3R_4748701_SNP [dm3] 3R_8922979_SNP [dm6]	A	G	2.984e^-6	0.06	INTRON pyd
3R	4348614	3R_4348614_SNP [dm3] 3R_8522892_SNP [dm6]	G	T	3.187e^-6	0.063	NON_SYNONYMOUS_CODING CG31454
2L	3150282	2L_3150282_SNP [dm3] 2L_3150282_SNP [dm6]	C	T	3.229e^-6	0.063	INTRON Mad
3L	5479040	3L_5479040_SNP [dm3] 3L_5485940_SNP [dm6]	G	A	3.328e^-6	0.064	INTERGENIC
X	4430947	X_4430947_SNP [dm3] X_4536914_SNP [dm6]	C	T	3.343e^-6	0.064	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13231535	2R_13231535_SNP [dm3] 2R_17344030_SNP [dm6]	C	T	3.538e^-6	0.067	INTRON mbl
3R	4834000	3R_4834000_SNP [dm3] 3R_9008278_SNP [dm6]	C	A	3.829e^-6	0.072	UPSTREAM CG11983 DOWNSTREAM CG11982 INTERGENIC
3R	4572598	3R_4572598_SNP [dm3] 3R_8746876_SNP [dm6]	C	G	4.015e^-6	0.073	UPSTREAM CG8223 INTRON CG9801	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16498699	2R_16498699_SNP [dm3] 2R_20611194_SNP [dm6]	T	A	4.019e^-6	0.073	INTRON Hil
2L	20571649	2L_20571649_SNP [dm3] 2L_20571649_SNP [dm6]	C	G	4.034e^-6	0.073	INTRON CR45347
2L	14245757	2L_14245757_SNP [dm3] 2L_14245757_SNP [dm6]	C	T	4.125e^-6	0.073	INTERGENIC
2L	14245760	2L_14245760_SNP [dm3] 2L_14245760_SNP [dm6]	T	C	4.125e^-6	0.073	INTERGENIC
3R	4360897	3R_4360897_DEL [dm3] 3R_8535175_DEL [dm6]	AAATCCAATG	A	4.138e^-6	0.073	INTERGENIC
2R	20606780	2R_20606780_SNP [dm3] 2R_24719257_SNP [dm6]	C	G	4.281e^-6	0.075	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10812759	X_10812759_SNP [dm3] X_10918726_SNP [dm6]	T	A	4.654e^-6	0.08	INTRON CG43901
2R	9319136	2R_9319136_SNP [dm3] 2R_13431631_SNP [dm6]	T	A	4.680e^-6	0.08	UPSTREAM tRNA:I:49Fd & 2 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	13076905	2L_13076905_SNP [dm3] 2L_13076905_SNP [dm6]	C	G	4.765e^-6	0.08	INTERGENIC
X	10812701	X_10812701_DEL [dm3] X_10918668_DEL [dm6]	TT	T	4.781e^-6	0.08	INTRON CG43901
3R	5474242	3R_5474242_SNP [dm3] 3R_9648520_SNP [dm6]	C	T	4.789e^-6	0.08	INTRON Dh44
2L	5316869	2L_5316869_SNP [dm3] 2L_5316869_SNP [dm6]	G	C	5.038e^-6	0.083	UTR_3_PRIME Ncoa6	TF binding site mE1_TFBS_cad
2R	15312269	2R_15312269_SNP [dm3] 2R_19424764_SNP [dm6]	T	A	5.081e^-6	0.083	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8138416	3L_8138416_SNP [dm3] 3L_8145316_SNP [dm6]	A	G	5.168e^-6	0.083	INTRON CG13676
2L	20561139	2L_20561139_SNP [dm3] 2L_20561139_SNP [dm6]	A	G	5.209e^-6	0.083	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6811305	2L_6811305_SNP [dm3] 2L_6811305_SNP [dm6]	G	A	5.236e^-6	0.083	INTERGENIC
2L	16083615	2L_16083615_SNP [dm3] 2L_16083615_SNP [dm6]	A	T	5.307e^-6	0.083	INTERGENIC
2L	16083711	2L_16083711_SNP [dm3] 2L_16083711_SNP [dm6]	A	T	5.307e^-6	0.083	INTERGENIC
3R	4570576	3R_4570576_SNP [dm3] 3R_8744854_SNP [dm6]	C	A	5.320e^-6	0.083	INTRON CG9801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18733306	2R_18733306_SNP [dm3] 2R_22845783_SNP [dm6]	A	G	5.418e^-6	0.084	UPSTREAM CG3649 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11067108	2R_11067108_SNP [dm3] 2R_15179603_SNP [dm6]	A	C	5.433e^-6	0.084	INTRON igl
2L	7641661	2L_7641661_SNP [dm3] 2L_7641661_SNP [dm6]	T	C	5.558e^-6	0.084	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_zfh1
2L	3232457	2L_3232457_SNP [dm3] 2L_3232457_SNP [dm6]	T	G	5.580e^-6	0.084	INTERGENIC
2R	17568836	2R_17568836_SNP [dm3] 2R_21681331_SNP [dm6]	A	C	5.791e^-6	0.087	INTRON CG30263
2L	11319615	2L_11319615_SNP [dm3] 2L_11319615_SNP [dm6]	T	C	5.862e^-6	0.087	DOWNSTREAM CR44583 INTERGENIC
3R	5457276	3R_5457276_SNP [dm3] 3R_9631554_SNP [dm6]	A	T	6.093e^-6	0.09	UPSTREAM SpdS & 1 other DOWNSTREAM CR45053 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4868315	3R_4868315_SNP [dm3] 3R_9042593_SNP [dm6]	T	A	6.187e^-6	0.091	UTR_3_PRIME Nmdmc DOWNSTREAM hyx
2L	17158926	2L_17158926_SNP [dm3] 2L_17158926_SNP [dm6]	T	C	6.278e^-6	0.091	INTRON beat-IIIa & 1 other
3R	4256513	3R_4256513_SNP [dm3] 3R_8430791_SNP [dm6]	A	T	6.287e^-6	0.091	INTRON CG45263
2L	3910842	2L_3910842_SNP [dm3] 2L_3910842_SNP [dm6]	C	T	6.413e^-6	0.092	DOWNSTREAM CG31773 INTRON fred
3L	5479016	3L_5479016_SNP [dm3] 3L_5485916_SNP [dm6]	T	A	6.499e^-6	0.092	INTERGENIC
X	6282812	X_6282812_SNP [dm3] X_6388779_SNP [dm6]	A	G	6.630e^-6	0.093	INTERGENIC
2L	14352640	2L_14352640_SNP [dm3] 2L_14352640_SNP [dm6]	G	A	6.643e^-6	0.093	UTR_3_PRIME l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
3R	4241863	3R_4241863_SNP [dm3] 3R_8416141_SNP [dm6]	T	A	6.727e^-6	0.093	INTRON CG45263
2R	17568865	2R_17568865_SNP [dm3] 2R_21681360_SNP [dm6]	G	T	6.801e^-6	0.094	INTRON CG30263
2L	9225749	2L_9225749_SNP [dm3] 2L_9225749_SNP [dm6]	G	T	7.116e^-6	0.097	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8358423	3R_8358423_SNP [dm3] 3R_12532701_SNP [dm6]	C	A	7.432e^-6	0.101	INTRON Octbeta3R
3R	4864797	3R_4864797_SNP [dm3] 3R_9039075_SNP [dm6]	G	T	7.506e^-6	0.101	UPSTREAM hyx INTRON neur & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	6083172	3L_6083172_SNP [dm3] 3L_6090072_SNP [dm6]	G	A	7.618e^-6	0.102	UTR_3_PRIME CG13293	TF binding site mE1_TFBS_cad
3L	15254755	3L_15254755_SNP [dm3] 3L_15261655_SNP [dm6]	G	A	7.849e^-6	0.103	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11411604	2L_11411604_SNP [dm3] 2L_11411604_SNP [dm6]	A	T	7.909e^-6	0.103	INTERGENIC	regulatory region REDfly_CRMs
X	18846849	X_18846849_SNP [dm3] X_18952816_SNP [dm6]	G	T	7.925e^-6	0.103	INTRON CG43759
3R	4572507	3R_4572507_SNP [dm3] 3R_8746785_SNP [dm6]	A	T	7.942e^-6	0.103	INTRON CG9801	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8847267	2L_8847267_SNP [dm3] 2L_8847267_SNP [dm6]	C	G	8.241e^-6	0.106	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	7000535	2L_7000535_SNP [dm3] 2L_7000535_SNP [dm6]	G	A	8.321e^-6	0.107	INTRON uif
2R	17567785	2R_17567785_SNP [dm3] 2R_21680280_SNP [dm6]	G	T	8.552e^-6	0.109	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19963640	2R_19963640_SNP [dm3] 2R_24076117_SNP [dm6]	C	T	8.641e^-6	0.109	DOWNSTREAM Mlp60A INTRON Mlp60A
2L	20632947	2L_20632947_SNP [dm3] 2L_20632947_SNP [dm6]	A	G	8.887e^-6	0.112	INTERGENIC
X	6282814	X_6282814_SNP [dm3] X_6388781_SNP [dm6]	T	G	9.015e^-6	0.113	INTERGENIC
3R	4253968	3R_4253968_SNP [dm3] 3R_8428246_SNP [dm6]	T	C	9.177e^-6	0.113	INTRON CG45263
2L	13301193	2L_13301193_SNP [dm3] 2L_13301193_SNP [dm6]	C	T	9.183e^-6	0.113	UTR_3_PRIME CG31729 DOWNSTREAM CG43778
3R	10786677	3R_10786677_SNP [dm3] 3R_14960955_SNP [dm6]	A	G	9.316e^-6	0.113	INTERGENIC
2L	20561803	2L_20561803_SNP [dm3] 2L_20561803_SNP [dm6]	C	A	9.338e^-6	0.113	UPSTREAM CR45347 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18024351	X_18024351_INS [dm3] X_18130318_INS [dm6]	T	TAACTGTGTGCGATTTACGA...	9.364e^-6	0.113	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
3R	4752032	3R_4752032_DEL [dm3] 3R_8926310_DEL [dm6]	TT	T	9.566e^-6	0.114	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9802372	2R_9802372_SNP [dm3] 2R_13914867_SNP [dm6]	A	T	9.667e^-6	0.114	INTRON shot
2L	1396403	2L_1396403_SNP [dm3] 2L_1396403_SNP [dm6]	C	T	9.677e^-6	0.114	INTRON lea	TF binding site BDTNP1_TFBS_da
X	16873132	X_16873132_SNP [dm3] X_16979099_SNP [dm6]	T	C	9.677e^-6	0.114	INTRON CG45002
2R	17927692	2R_17927692_SNP [dm3] 2R_22040187_SNP [dm6]	G	A	9.857e^-6	0.114	UPSTREAM CG34370 INTERGENIC
2L	13074224	2L_13074224_SNP [dm3] 2L_13074224_SNP [dm6]	T	G	9.961e^-6	0.114	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13166542	X_13166542_SNP [dm3] X_13272509_SNP [dm6]	T	A	1.013e^-5	0.114	START_GAINED HDAC4 UTR_5_PRIME HDAC4 INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12174848	2L_12174848_SNP [dm3] 2L_12174848_SNP [dm6]	T	A	1.033e^-5	0.114	UPSTREAM aret & 1 other DOWNSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	142153	3L_142153_SNP [dm3] 3L_142153_SNP [dm6]	C	T	1.041e^-5	0.114	SYNONYMOUS_CODING Pdk1	TF binding site mE1_TFBS_cad
2R	4838293	2R_4838293_SNP [dm3] 2R_8950788_SNP [dm6]	G	A	1.048e^-5	0.114	UTR_5_PRIME CG8229 & 1 other UPSTREAM Tom7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	2215965	X_2215965_SNP [dm3] X_2321932_SNP [dm6]	A	T	1.050e^-5	0.114	INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5254001	X_5254001_SNP [dm3] X_5359968_SNP [dm6]	A	T	1.050e^-5	0.114	INTRON SK
3R	19905255	3R_19905255_SNP [dm3] 3R_24079533_SNP [dm6]	A	C	1.055e^-5	0.114	INTRON 4EHP
2R	8668974	2R_8668974_SNP [dm3] 2R_12781469_SNP [dm6]	C	A	1.060e^-5	0.114	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	5903923	X_5903923_SNP [dm3] X_6009890_SNP [dm6]	T	A	1.064e^-5	0.114	INTRON mab-21
3R	4581899	3R_4581899_SNP [dm3] 3R_8756177_SNP [dm6]	G	A	1.066e^-5	0.114	START_GAINED CG34135 & 1 other UTR_5_PRIME CG34135 & 1 other DOWNSTREAM CR44228
2L	2833519	2L_2833519_SNP [dm3] 2L_2833519_SNP [dm6]	G	A	1.077e^-5	0.114	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3917521	2L_3917521_SNP [dm3] 2L_3917521_SNP [dm6]	G	C	1.077e^-5	0.114	INTRON fred	TF binding site mE1_TFBS_cad
X	16103486	X_16103486_DEL [dm3] X_16209453_DEL [dm6]	AA	A	1.077e^-5	0.114	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	19833123	2L_19833123_SNP [dm3] 2L_19833123_SNP [dm6]	C	T	1.082e^-5	0.114	INTRON sick
3R	4583739	3R_4583739_SNP [dm3] 3R_8758017_SNP [dm6]	A	C	1.092e^-5	0.114	INTRON CG11768 & 1 other
3R	5408678	3R_5408678_SNP [dm3] 3R_9582956_SNP [dm6]	C	A	1.100e^-5	0.114	INTRON CG8301 & 1 other
2L	20790740	2L_20790740_SNP [dm3] 2L_20790740_SNP [dm6]	C	G	1.101e^-5	0.114	INTRON vari
2L	20790752	2L_20790752_SNP [dm3] 2L_20790752_SNP [dm6]	C	G	1.101e^-5	0.114	INTRON vari
2L	20790753	2L_20790753_SNP [dm3] 2L_20790753_SNP [dm6]	T	C	1.101e^-5	0.114	INTRON vari
2L	3018506	2L_3018506_SNP [dm3] 2L_3018506_SNP [dm6]	G	T	1.119e^-5	0.116	UPSTREAM CG17264 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4225570	3R_4225570_SNP [dm3] 3R_8399848_SNP [dm6]	G	C	1.139e^-5	0.117	INTRON CG45263
2R	18733320	2R_18733320_SNP [dm3] 2R_22845797_SNP [dm6]	C	T	1.152e^-5	0.117	UPSTREAM CG3649 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10603156	2R_10603156_SNP [dm3] 2R_14715651_SNP [dm6]	A	T	1.152e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10886741	3L_10886741_SNP [dm3] 3L_10893641_SNP [dm6]	A	T	1.181e^-5	0.119	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
2R	2747286	2R_2747286_SNP [dm3] 2R_6859781_SNP [dm6]	C	A	1.187e^-5	0.119	INTERGENIC
X	6102377	X_6102377_SNP [dm3] X_6208344_SNP [dm6]	T	A	1.245e^-5	0.123	INTERGENIC
3R	4252128	3R_4252128_SNP [dm3] 3R_8426406_SNP [dm6]	G	A	1.251e^-5	0.123	INTRON CG45263
X	4376448	X_4376448_SNP [dm3] X_4482415_SNP [dm6]	G	T	1.252e^-5	0.123	INTRON CR32773 & 1 other
3R	1941358	3R_1941358_SNP [dm3] 3R_6115636_SNP [dm6]	C	A	1.255e^-5	0.123	INTERGENIC
3R	4810929	3R_4810929_SNP [dm3] 3R_8985207_SNP [dm6]	C	A	1.256e^-5	0.123	SYNONYMOUS_CODING CG11970 UPSTREAM RagA-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9402804	2L_9402804_INS [dm3] 2L_9402804_INS [dm6]	G	GCA	1.264e^-5	0.123	INTRON Shawl
2L	10114553	2L_10114553_SNP [dm3] 2L_10114553_SNP [dm6]	C	G	1.274e^-5	0.123	INTRON CG44153 & 1 other
3R	6265708	3R_6265708_SNP [dm3] 3R_10439986_SNP [dm6]	T	A	1.307e^-5	0.125	INTERGENIC
2L	11591274	2L_11591274_SNP [dm3] 2L_11591274_SNP [dm6]	G	A	1.315e^-5	0.125	DOWNSTREAM Acp33A INTRON kek2
3R	4253742	3R_4253742_SNP [dm3] 3R_8428020_SNP [dm6]	T	A	1.322e^-5	0.125	INTRON CG45263
2L	19863536	2L_19863536_SNP [dm3] 2L_19863536_SNP [dm6]	C	G	1.327e^-5	0.125	INTRON sick
2L	9402715	2L_9402715_SNP [dm3] 2L_9402715_SNP [dm6]	G	A	1.334e^-5	0.125	INTRON Shawl
3R	5456618	3R_5456618_SNP [dm3] 3R_9630896_SNP [dm6]	G	T	1.349e^-5	0.125	UPSTREAM SpdS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10765122	3L_10765122_SNP [dm3] 3L_10772022_SNP [dm6]	G	T	1.352e^-5	0.125	UTR_5_PRIME CG43245	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7022385	2R_7022385_SNP [dm3] 2R_11134880_SNP [dm6]	T	C	1.359e^-5	0.125	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	9538150	2L_9538150_SNP [dm3] 2L_9538150_SNP [dm6]	C	T	1.360e^-5	0.125	SYNONYMOUS_CODING Oatp30B
3R	5465933	3R_5465933_SNP [dm3] 3R_9640211_SNP [dm6]	G	A	1.363e^-5	0.125	UPSTREAM Dh44 INTRON Dh44
X	14955994	X_14955994_SNP [dm3] X_15061961_SNP [dm6]	T	A	1.369e^-5	0.125	INTRON hiw
2R	8670645	2R_8670645_SNP [dm3] 2R_12783140_SNP [dm6]	A	T	1.385e^-5	0.126	DOWNSTREAM CR45137 INTRON sca
3R	4574695	3R_4574695_SNP [dm3] 3R_8748973_SNP [dm6]	C	T	1.395e^-5	0.127	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4431679	2R_4431679_SNP [dm3] 2R_8544174_SNP [dm6]	A	G	1.408e^-5	0.127	UPSTREAM CR44279 INTERGENIC
2R	18733331	2R_18733331_SNP [dm3] 2R_22845808_SNP [dm6]	A	G	1.409e^-5	0.127	UPSTREAM CG3649 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4050280	2L_4050280_SNP [dm3] 2L_4050280_SNP [dm6]	G	T	1.426e^-5	0.127	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4515780	2R_4515780_SNP [dm3] 2R_8628275_SNP [dm6]	T	C	1.427e^-5	0.127	SYNONYMOUS_CODING CG14749 UPSTREAM beta3GalTII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19076957	2L_19076957_SNP [dm3] 2L_19076957_SNP [dm6]	A	C	1.441e^-5	0.127	DOWNSTREAM CG10700 INTERGENIC
2L	10964557	2L_10964557_SNP [dm3] 2L_10964557_SNP [dm6]	G	T	1.445e^-5	0.127	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2R	11239579	2R_11239579_INS [dm3] 2R_15352074_INS [dm6]	A	AACCA	1.460e^-5	0.128	INTRON unc-5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	4240408	3R_4240408_DEL [dm3] 3R_8414686_DEL [dm6]	CCATCCC	C	1.475e^-5	0.129	INTRON CG45263
3R	5156230	3R_5156230_SNP [dm3] 3R_9330508_SNP [dm6]	A	T	1.491e^-5	0.13	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2L	2855854	2L_2855854_SNP [dm3] 2L_2855854_SNP [dm6]	A	T	1.498e^-5	0.13	UPSTREAM RpS21 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
2L	14405442	2L_14405442_SNP [dm3] 2L_14405442_SNP [dm6]	T	C	1.515e^-5	0.13	INTRON elB	TF binding site mE1_TFBS_cad
2L	13096575	2L_13096575_SNP [dm3] 2L_13096575_SNP [dm6]	G	A	1.525e^-5	0.13	UPSTREAM CR45447 INTERGENIC
2L	9689142	2L_9689142_SNP [dm3] 2L_9689142_SNP [dm6]	T	C	1.530e^-5	0.13	INTRON Pka-C1
2L	17934515	2L_17934515_SNP [dm3] 2L_17934515_SNP [dm6]	G	A	1.561e^-5	0.13	INTERGENIC
2L	17938232	2L_17938232_SNP [dm3] 2L_17938232_SNP [dm6]	C	T	1.561e^-5	0.13	DOWNSTREAM CR44399 INTERGENIC
X	2215411	X_2215411_SNP [dm3] X_2321378_SNP [dm6]	G	T	1.569e^-5	0.13	DOWNSTREAM CR34052 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14245797	2L_14245797_DEL [dm3] 2L_14245797_DEL [dm6]	CC	C	1.582e^-5	0.13	INTERGENIC
X	18315399	X_18315399_DEL [dm3] X_18421366_DEL [dm6]	TCATT	AG	1.584e^-5	0.13	INTERGENIC
2L	19833075	2L_19833075_SNP [dm3] 2L_19833075_SNP [dm6]	A	C	1.588e^-5	0.13	INTRON sick
2L	19833096	2L_19833096_SNP [dm3] 2L_19833096_SNP [dm6]	T	C	1.588e^-5	0.13	INTRON sick
3L	521971	3L_521971_SNP [dm3] 3L_521971_SNP [dm6]	A	T	1.591e^-5	0.13	INTRON klar
3R	2176702	3R_2176702_SNP [dm3] 3R_6350980_SNP [dm6]	C	A	1.599e^-5	0.13	UTR_5_PRIME Pak DOWNSTREAM Hr83 INTRON Pak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2177418	3R_2177418_SNP [dm3] 3R_6351696_SNP [dm6]	C	A	1.599e^-5	0.13	INTRON Pak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	12078085	2L_12078085_SNP [dm3] 2L_12078085_SNP [dm6]	G	A	1.600e^-5	0.13	DOWNSTREAM CG14947 INTERGENIC	regulatory region REDfly_CRMs
X	5292813	X_5292813_INS [dm3] X_5398780_INS [dm6]	T	TT	1.641e^-5	0.132	INTRON SK
3L	10766372	3L_10766372_SNP [dm3] 3L_10773272_SNP [dm6]	A	T	1.645e^-5	0.132	UTR_3_PRIME CG43245 INTRON CG43245
3R	4862576	3R_4862576_SNP [dm3] 3R_9036854_SNP [dm6]	A	C	1.653e^-5	0.132	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18003918	3R_18003918_SNP [dm3] 3R_22178196_SNP [dm6]	T	C	1.655e^-5	0.132	INTRON SKIP
2L	6237505	2L_6237505_SNP [dm3] 2L_6237505_SNP [dm6]	G	T	1.659e^-5	0.132	INTERGENIC
3R	5472590	3R_5472590_SNP [dm3] 3R_9646868_SNP [dm6]	A	G	1.662e^-5	0.132	UPSTREAM Fst INTRON Dh44
X	6882779	X_6882779_SNP [dm3] X_6988746_SNP [dm6]	G	A	1.671e^-5	0.132	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	4548831	3R_4548831_SNP [dm3] 3R_8723109_SNP [dm6]	A	T	1.680e^-5	0.132	UPSTREAM CG8145 DOWNSTREAM CG8136 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22771229	3R_22771229_SNP [dm3] 3R_26945507_SNP [dm6]	G	T	1.706e^-5	0.133	UPSTREAM CG14252 DOWNSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	14360855	2L_14360855_SNP [dm3] 2L_14360855_SNP [dm6]	C	A	1.752e^-5	0.133	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6883081	X_6883081_SNP [dm3] X_6989048_SNP [dm6]	A	G	1.766e^-5	0.133	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4886284	3R_4886284_SNP [dm3] 3R_9060562_SNP [dm6]	T	C	1.769e^-5	0.133	INTRON Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9319038	2R_9319038_SNP [dm3] 2R_13431533_SNP [dm6]	T	A	1.777e^-5	0.133	UPSTREAM tRNA:I:49Fd & 2 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	9319155	2R_9319155_SNP [dm3] 2R_13431650_SNP [dm6]	G	A	1.777e^-5	0.133	UPSTREAM tRNA:I:49Fd & 2 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	9319158	2R_9319158_DEL [dm3] 2R_13431653_DEL [dm6]	AT	A	1.777e^-5	0.133	UPSTREAM tRNA:I:49Fd & 2 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	18024346	X_18024346_DEL [dm3] X_18130313_DEL [dm6]	AG	A	1.777e^-5	0.133	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
3R	2176492	3R_2176492_DEL [dm3] 3R_6350770_DEL [dm6]	TCAAAATTTGATGTGGTATT...	T	1.778e^-5	0.133	UPSTREAM Pak DOWNSTREAM Hr83 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2176515	3R_2176515_SNP [dm3] 3R_6350793_SNP [dm6]	T	C	1.778e^-5	0.133	UPSTREAM Pak DOWNSTREAM Hr83 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2176516	3R_2176516_SNP [dm3] 3R_6350794_SNP [dm6]	G	A	1.778e^-5	0.133	UPSTREAM Pak DOWNSTREAM Hr83 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9879702	3R_9879702_SNP [dm3] 3R_14053980_SNP [dm6]	C	G	1.818e^-5	0.136	INTERGENIC
3R	10014982	3R_10014982_SNP [dm3] 3R_14189260_SNP [dm6]	C	T	1.826e^-5	0.136	INTRON Dop1R1
2R	10485914	2R_10485914_SNP [dm3] 2R_14598409_SNP [dm6]	G	T	1.834e^-5	0.136	SYNONYMOUS_CODING RpI1
3R	4533029	3R_4533029_SNP [dm3] 3R_8707307_SNP [dm6]	A	T	1.836e^-5	0.136	INTERGENIC
3L	22769206	3L_22769206_SNP [dm3] 3L_22776106_SNP [dm6]	C	T	1.849e^-5	0.136	INTRON SPoCk
X	18315394	X_18315394_SNP [dm3] X_18421361_SNP [dm6]	C	G	1.865e^-5	0.136	INTERGENIC
3R	5770045	3R_5770045_SNP [dm3] 3R_9944323_SNP [dm6]	C	G	1.888e^-5	0.136	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	18919630	2L_18919630_SNP [dm3] 2L_18919630_SNP [dm6]	C	T	1.907e^-5	0.136	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
X	18024344	X_18024344_SNP [dm3] X_18130311_SNP [dm6]	A	T	1.910e^-5	0.136	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
3R	4865238	3R_4865238_SNP [dm3] 3R_9039516_SNP [dm6]	C	T	1.923e^-5	0.136	UPSTREAM hyx & 1 other INTRON hyx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	7898843	3L_7898843_SNP [dm3] 3L_7905743_SNP [dm6]	T	C	1.927e^-5	0.136	INTRON pbl
3R	10151223	3R_10151223_DEL [dm3] 3R_14325501_DEL [dm6]	ACTTTCCTCC	A	1.928e^-5	0.136		TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6526039	2R_6526039_SNP [dm3] 2R_10638534_SNP [dm6]	C	T	1.931e^-5	0.136	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2R	9319402	2R_9319402_SNP [dm3] 2R_13431897_SNP [dm6]	T	A	1.934e^-5	0.136	UPSTREAM tRNA:I:49Fe & 1 other DOWNSTREAM tRNA:I:49Fb & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	4590516	2R_4590516_SNP [dm3] 2R_8703011_SNP [dm6]	G	T	1.948e^-5	0.136	INTRON CG12376
2L	19833079	2L_19833079_SNP [dm3] 2L_19833079_SNP [dm6]	A	G	1.953e^-5	0.136	INTRON sick
2L	19833083	2L_19833083_SNP [dm3] 2L_19833083_SNP [dm6]	T	C	1.953e^-5	0.136	INTRON sick
X	14956144	X_14956144_SNP [dm3] X_15062111_SNP [dm6]	T	C	1.959e^-5	0.136	INTRON hiw
2L	19833295	2L_19833295_SNP [dm3] 2L_19833295_SNP [dm6]	T	C	1.962e^-5	0.136	INTRON sick
2R	17132967	2R_17132967_SNP [dm3] 2R_21245462_SNP [dm6]	C	A	1.964e^-5	0.136	INTRON ASPP	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	5429564	3R_5429564_SNP [dm3] 3R_9603842_SNP [dm6]	G	T	1.974e^-5	0.136	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	3287944	2R_3287944_SNP [dm3] 2R_7400439_SNP [dm6]	A	T	1.977e^-5	0.136	UPSTREAM CG11112 INTRON Eaf
2L	18470806	2L_18470806_SNP [dm3] 2L_18470806_SNP [dm6]	A	T	1.981e^-5	0.136	UPSTREAM mir-100 INTRON let-7-C
2R	18733364	2R_18733364_SNP [dm3] 2R_22845841_SNP [dm6]	A	T	2.007e^-5	0.136	UPSTREAM CG3649 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5443040	3R_5443040_SNP [dm3] 3R_9617318_SNP [dm6]	A	T	2.012e^-5	0.136	INTRON CG8312
3R	5444121	3R_5444121_SNP [dm3] 3R_9618399_SNP [dm6]	A	G	2.015e^-5	0.136	INTRON CG8312
X	12325946	X_12325946_SNP [dm3] X_12431913_SNP [dm6]	T	C	2.028e^-5	0.136	UPSTREAM Pkcdelta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8232154	3R_8232154_SNP [dm3] 3R_12406432_SNP [dm6]	A	C	2.032e^-5	0.136	UPSTREAM CG5167 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_jumu
3R	5477610	3R_5477610_SNP [dm3] 3R_9651888_SNP [dm6]	T	G	2.041e^-5	0.136	DOWNSTREAM CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
3R	5442464	3R_5442464_SNP [dm3] 3R_9616742_SNP [dm6]	G	A	2.045e^-5	0.136	INTRON CG8312
2L	19718676	2L_19718676_SNP [dm3] 2L_19718676_SNP [dm6]	C	T	2.056e^-5	0.136	INTRON Lar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	4864146	3R_4864146_SNP [dm3] 3R_9038424_SNP [dm6]	G	T	2.062e^-5	0.136	UPSTREAM hyx INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22348569	3L_22348569_SNP [dm3] 3L_22355469_SNP [dm6]	C	T	2.073e^-5	0.136	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
3L	22356670	3L_22356670_SNP [dm3] 3L_22363570_SNP [dm6]	A	T	2.073e^-5	0.136	INTRON Ten-m	TF binding site mE1_TFBS_sens
2L	14282223	2L_14282223_SNP [dm3] 2L_14282223_SNP [dm6]	T	C	2.089e^-5	0.136	INTRON wb
3R	4759569	3R_4759569_SNP [dm3] 3R_8933847_SNP [dm6]	A	G	2.096e^-5	0.136	DOWNSTREAM CR44020 INTERGENIC
2L	9412370	2L_9412370_SNP [dm3] 2L_9412370_SNP [dm6]	C	T	2.106e^-5	0.136	INTRON Shawl
3R	5477208	3R_5477208_SNP [dm3] 3R_9651486_SNP [dm6]	A	T	2.115e^-5	0.136	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
3R	4253736	3R_4253736_SNP [dm3] 3R_8428014_SNP [dm6]	A	T	2.123e^-5	0.136	INTRON CG45263
3R	4583669	3R_4583669_SNP [dm3] 3R_8757947_SNP [dm6]	T	A	2.137e^-5	0.136	INTRON CG11768 & 1 other
3R	4583679	3R_4583679_SNP [dm3] 3R_8757957_SNP [dm6]	C	T	2.137e^-5	0.136	INTRON CG11768 & 1 other
3R	1893916	3R_1893916_SNP [dm3] 3R_6068194_SNP [dm6]	T	A	2.141e^-5	0.136	INTERGENIC
2L	9422410	2L_9422410_SNP [dm3] 2L_9422410_SNP [dm6]	A	G	2.144e^-5	0.136	INTRON Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4423700	X_4423700_SNP [dm3] X_4529667_SNP [dm6]	A	G	2.146e^-5	0.136	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	4785072	3R_4785072_SNP [dm3] 3R_8959350_SNP [dm6]	C	A	2.147e^-5	0.136	INTRON CG11966	TF binding site mE1_TFBS_cad
2L	6118068	2L_6118068_SNP [dm3] 2L_6118068_SNP [dm6]	A	T	2.155e^-5	0.136	UPSTREAM CG31642 INTRON stai
2L	7193697	2L_7193697_SNP [dm3] 2L_7193697_SNP [dm6]	A	T	2.181e^-5	0.137	INTRON CG4497	TF binding site BDTNP1_TFBS_dl
X	15530007	X_15530007_SNP [dm3] X_15635974_SNP [dm6]	A	T	2.183e^-5	0.137	UPSTREAM CR44423 INTERGENIC
2R	17742948	2R_17742948_SNP [dm3] 2R_21855443_SNP [dm6]	A	G	2.189e^-5	0.137	INTERGENIC
2R	17742950	2R_17742950_SNP [dm3] 2R_21855445_SNP [dm6]	G	T	2.189e^-5	0.137	INTERGENIC
3L	6838081	3L_6838081_DEL [dm3] 3L_6844981_DEL [dm6]	ATGGCTGTGGAA...	A	2.201e^-5	0.137	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4567295	3R_4567295_SNP [dm3] 3R_8741573_SNP [dm6]	T	A	2.214e^-5	0.137	INTRON CG9801
2R	4573918	2R_4573918_SNP [dm3] 2R_8686413_SNP [dm6]	G	A	2.225e^-5	0.138	INTERGENIC
3R	1935470	3R_1935470_SNP [dm3] 3R_6109748_SNP [dm6]	T	C	2.233e^-5	0.138	UTR_3_PRIME Obp83ef DOWNSTREAM Obp83cd
3R	4227681	3R_4227681_SNP [dm3] 3R_8401959_SNP [dm6]	A	T	2.258e^-5	0.138	INTRON CG45263
2L	10200219	2L_10200219_SNP [dm3] 2L_10200219_SNP [dm6]	G	A	2.271e^-5	0.138	SYNONYMOUS_CODING Ripalpha UPSTREAM RpL7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	6689387	3R_6689387_SNP [dm3] 3R_10863665_SNP [dm6]	C	A	2.272e^-5	0.138	SYNONYMOUS_CODING SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
X	18790603	X_18790603_DEL [dm3] X_18896570_DEL [dm6]	TGTGATTGAATCGAATATTC...	T	2.279e^-5	0.138	UTR_3_PRIME CG7349 DOWNSTREAM CG7349 INTRAGENIC CG7349 INTERGENIC
2L	9399518	2L_9399518_SNP [dm3] 2L_9399518_SNP [dm6]	G	A	2.284e^-5	0.138	INTRON Shawl
3R	4253743	3R_4253743_SNP [dm3] 3R_8428021_SNP [dm6]	T	C	2.293e^-5	0.138	INTRON CG45263
2R	3586375	2R_3586375_SNP [dm3] 2R_7698870_SNP [dm6]	C	T	2.300e^-5	0.138	START_GAINED CG1399 UTR_5_PRIME CG1399 UPSTREAM CG30493 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	2732916	X_2732916_SNP [dm3] X_2838883_SNP [dm6]	A	G	2.310e^-5	0.139	INTRON kirre
3L	14743231	3L_14743231_SNP [dm3] 3L_14750131_SNP [dm6]	A	T	2.327e^-5	0.139	DOWNSTREAM Trl INTRON Trl & 1 other
3R	9988295	3R_9988295_SNP [dm3] 3R_14162573_SNP [dm6]	G	A	2.331e^-5	0.139	UPSTREAM CG3199 INTERGENIC
X	18790805	X_18790805_INS [dm3] X_18896772_INS [dm6]	T	TCGCCACAT	2.332e^-5	0.139	DOWNSTREAM CG7349 INTERGENIC
X	6136062	X_6136062_SNP [dm3] X_6242029_SNP [dm6]	G	A	2.360e^-5	0.14	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12476913	2L_12476913_SNP [dm3] 2L_12476913_SNP [dm6]	T	A	2.364e^-5	0.14	INTRON bun
2L	2928864	2L_2928864_SNP [dm3] 2L_2928864_SNP [dm6]	T	G	2.401e^-5	0.14	INTRON lilli
X	18315389	X_18315389_DEL [dm3] X_18421356_DEL [dm6]	AAT	A	2.409e^-5	0.14	INTERGENIC
2L	10352448	2L_10352448_SNP [dm3] 2L_10352448_SNP [dm6]	G	A	2.423e^-5	0.14	UPSTREAM CG34367 INTRON CG34367
X	18791208	X_18791208_SNP [dm3] X_18897175_SNP [dm6]	C	A	2.426e^-5	0.14	DOWNSTREAM CG7349 INTERGENIC
2R	17767168	2R_17767168_SNP [dm3] 2R_21879663_SNP [dm6]	C	G	2.433e^-5	0.14	INTRON Fili
2L	9426054	2L_9426054_SNP [dm3] 2L_9426054_SNP [dm6]	G	T	2.462e^-5	0.14	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3R	6123010	3R_6123010_SNP [dm3] 3R_10297288_SNP [dm6]	A	C	2.466e^-5	0.14	INTRON CG43143
2L	20571632	2L_20571632_SNP [dm3] 2L_20571632_SNP [dm6]	T	C	2.471e^-5	0.14	INTRON CR45347
3R	4860755	3R_4860755_SNP [dm3] 3R_9035033_SNP [dm6]	T	G	2.475e^-5	0.14	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13821798	3L_13821798_SNP [dm3] 3L_13828698_SNP [dm6]	A	G	2.496e^-5	0.14	INTERGENIC
3L	22766299	3L_22766299_SNP [dm3] 3L_22773199_SNP [dm6]	A	G	2.499e^-5	0.14	UPSTREAM SPoCk INTRON SPoCk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22766474	3L_22766474_SNP [dm3] 3L_22773374_SNP [dm6]	C	T	2.499e^-5	0.14	UPSTREAM SPoCk INTRON SPoCk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	22767720	3L_22767720_SNP [dm3] 3L_22774620_SNP [dm6]	C	T	2.499e^-5	0.14	INTRON SPoCk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	22770018	3L_22770018_SNP [dm3] 3L_22776918_SNP [dm6]	T	A	2.499e^-5	0.14	INTRON SPoCk
3L	22770044	3L_22770044_SNP [dm3] 3L_22776944_SNP [dm6]	G	C	2.499e^-5	0.14	INTRON SPoCk
3L	22773227	3L_22773227_SNP [dm3] 3L_22780127_SNP [dm6]	G	T	2.499e^-5	0.14	INTRON SPoCk	transposable element FlyBase
3L	22900399	3L_22900399_SNP [dm3] 3L_22907299_SNP [dm6]	G	T	2.499e^-5	0.14	INTERGENIC
3L	14747501	3L_14747501_SNP [dm3] 3L_14754401_SNP [dm6]	G	A	2.506e^-5	0.14	SYNONYMOUS_CODING Trl UTR_5_PRIME CG42507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11750585	2R_11750585_SNP [dm3] 2R_15863080_SNP [dm6]	A	G	2.576e^-5	0.143	UPSTREAM Gpo-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3495470	3L_3495470_SNP [dm3] 3L_3495470_SNP [dm6]	T	C	2.585e^-5	0.144	INTRON CG42324
3L	5502457	3L_5502457_SNP [dm3] 3L_5509357_SNP [dm6]	T	G	2.616e^-5	0.145	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18482203	3R_18482203_SNP [dm3] 3R_22656481_SNP [dm6]	T	A	2.624e^-5	0.145	INTRON CG45058
2L	13572254	2L_13572254_SNP [dm3] 2L_13572254_SNP [dm6]	T	C	2.628e^-5	0.145	INTRON kuz
2L	13147635	2L_13147635_SNP [dm3] 2L_13147635_SNP [dm6]	A	T	2.694e^-5	0.148	DOWNSTREAM CR44199 INTERGENIC
3R	4574966	3R_4574966_SNP [dm3] 3R_8749244_SNP [dm6]	T	A	2.708e^-5	0.148	UTR_3_PRIME CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3687625	2R_3687625_SNP [dm3] 2R_7800120_SNP [dm6]	A	C	2.715e^-5	0.148	DOWNSTREAM Nop17l INTRON mus205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4823196	3R_4823196_SNP [dm3] 3R_8997474_SNP [dm6]	T	A	2.723e^-5	0.148	UPSTREAM CG11977 INTRON CG31100
2R	12459583	2R_12459583_SNP [dm3] 2R_16572078_SNP [dm6]	T	A	2.741e^-5	0.148	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
X	7639547	X_7639547_SNP [dm3] X_7745514_SNP [dm6]	T	A	2.742e^-5	0.148	INTERGENIC
2L	6118069	2L_6118069_SNP [dm3] 2L_6118069_SNP [dm6]	A	G	2.749e^-5	0.148	UPSTREAM CG31642 INTRON stai
2R	12325755	2R_12325755_SNP [dm3] 2R_16438250_SNP [dm6]	T	C	2.756e^-5	0.148	INTERGENIC
3R	5450555	3R_5450555_SNP [dm3] 3R_9624833_SNP [dm6]	G	A	2.768e^-5	0.148	UTR_3_PRIME CG8312 DOWNSTREAM CG9427	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6269077	3R_6269077_DEL [dm3] 3R_10443355_DEL [dm6]	AA	A	2.778e^-5	0.148	INTERGENIC
2L	11190066	2L_11190066_SNP [dm3] 2L_11190066_SNP [dm6]	G	A	2.787e^-5	0.148	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8358271	3R_8358271_SNP [dm3] 3R_12532549_SNP [dm6]	G	T	2.800e^-5	0.148	INTRON Octbeta3R
2R	14356281	2R_14356281_SNP [dm3] 2R_18468776_SNP [dm6]	G	A	2.800e^-5	0.148	INTRON CG30116
3L	3817734	3L_3817734_SNP [dm3] 3L_3817734_SNP [dm6]	A	G	2.818e^-5	0.149	UPSTREAM enc INTRON Scsalpha	TF binding site mE1_TFBS_sens
3L	15880149	3L_15880149_SNP [dm3] 3L_15887049_SNP [dm6]	T	A	2.835e^-5	0.149	INTRON pHCl
2L	14352647	2L_14352647_SNP [dm3] 2L_14352647_SNP [dm6]	T	G	2.838e^-5	0.149	UTR_3_PRIME l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
3L	22764155	3L_22764155_SNP [dm3] 3L_22771055_SNP [dm6]	T	A	2.864e^-5	0.15	INTRON SPoCk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14575697	2L_14575697_SNP [dm3] 2L_14575697_SNP [dm6]	G	A	2.898e^-5	0.151	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2165338	3R_2165338_SNP [dm3] 3R_6339616_SNP [dm6]	T	A	2.912e^-5	0.152	UPSTREAM Osi20 INTERGENIC
2L	19377938	2L_19377938_SNP [dm3] 2L_19377938_SNP [dm6]	C	T	2.934e^-5	0.152	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6310539	3R_6310539_DEL [dm3] 3R_10484817_DEL [dm6]	GCTCACA	G	2.967e^-5	0.154	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13788933	2R_13788933_SNP [dm3] 2R_17901428_SNP [dm6]	T	C	2.993e^-5	0.154	INTRON Elk
3R	5692951	3R_5692951_SNP [dm3] 3R_9867229_SNP [dm6]	C	A	2.994e^-5	0.154	INTRON Teh1	TF binding site mE1_TFBS_HSA
3R	4837047	3R_4837047_SNP [dm3] 3R_9011325_SNP [dm6]	A	T	3.007e^-5	0.154	INTRON CG11984	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3141307	2L_3141307_SNP [dm3] 2L_3141307_SNP [dm6]	G	A	3.009e^-5	0.154	INTRON toc
2L	5290490	2L_5290490_SNP [dm3] 2L_5290490_SNP [dm6]	A	C	3.030e^-5	0.155	INTRON vri	TF binding site BDTNP1_TFBS_dl
3R	4578642	3R_4578642_SNP [dm3] 3R_8752920_SNP [dm6]	C	G	3.043e^-5	0.155	NON_SYNONYMOUS_CODING CG8223 START_GAINED CG34135 UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 UPSTREAM CG34135	TF binding site mE1_TFBS_cad
3R	4253763	3R_4253763_SNP [dm3] 3R_8428041_SNP [dm6]	A	G	3.050e^-5	0.155	INTRON CG45263
3R	2035554	3R_2035554_INS [dm3] 3R_6209832_INS [dm6]	T	CAAAGGTTCA	3.059e^-5	0.155	INTRON Osi2
X	10807803	X_10807803_SNP [dm3] X_10913770_SNP [dm6]	C	G	3.060e^-5	0.155	INTRON CG43901
X	19891453	X_19891453_SNP [dm3] X_19997420_SNP [dm6]	G	A	3.068e^-5	0.155	INTERGENIC
2L	4747612	2L_4747612_SNP [dm3] 2L_4747612_SNP [dm6]	T	A	3.074e^-5	0.155	INTRON CG15630
3R	4970428	3R_4970428_DEL [dm3] 3R_9144706_DEL [dm6]	AA	A	3.084e^-5	0.155	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5289768	2L_5289768_SNP [dm3] 2L_5289768_SNP [dm6]	A	T	3.119e^-5	0.156	INTRON vri	TF binding site BDTNP1_TFBS_dl
2R	10603184	2R_10603184_SNP [dm3] 2R_14715679_SNP [dm6]	A	G	3.130e^-5	0.156	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9590577	3R_9590577_SNP [dm3] 3R_13764855_SNP [dm6]	C	T	3.138e^-5	0.156	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	6935015	3R_6935015_SNP [dm3] 3R_11109293_SNP [dm6]	C	A	3.179e^-5	0.158	INTERGENIC
3R	5429585	3R_5429585_SNP [dm3] 3R_9603863_SNP [dm6]	C	T	3.215e^-5	0.159	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	11215394	X_11215394_SNP [dm3] X_11321361_SNP [dm6]	C	A	3.224e^-5	0.159	DOWNSTREAM sisA INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12325926	X_12325926_SNP [dm3] X_12431893_SNP [dm6]	A	C	3.234e^-5	0.159	UPSTREAM Pkcdelta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4253715	3R_4253715_SNP [dm3] 3R_8427993_SNP [dm6]	C	T	3.244e^-5	0.159	INTRON CG45263
3L	5479045	3L_5479045_SNP [dm3] 3L_5485945_SNP [dm6]	A	T	3.257e^-5	0.159	INTERGENIC
3R	2498019	3R_2498019_SNP [dm3] 3R_6672297_SNP [dm6]	T	A	3.267e^-5	0.16	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
X	10621546	X_10621546_DEL [dm3] X_10727513_DEL [dm6]	TT	T	3.291e^-5	0.16	INTRON CG32676
3R	4861232	3R_4861232_SNP [dm3] 3R_9035510_SNP [dm6]	T	A	3.450e^-5	0.163	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6269871	3R_6269871_SNP [dm3] 3R_10444149_SNP [dm6]	C	G	3.467e^-5	0.163	INTERGENIC
2L	22048348	2L_22048348_SNP [dm3] 2L_22048348_SNP [dm6]	A	G	3.468e^-5	0.163	INTERGENIC	transposable element FlyBase
2R	17568866	2R_17568866_SNP [dm3] 2R_21681361_SNP [dm6]	T	G	3.480e^-5	0.163	INTRON CG30263
3R	10014524	3R_10014524_SNP [dm3] 3R_14188802_SNP [dm6]	G	A	3.492e^-5	0.163	INTRON Dop1R1
2L	6118070	2L_6118070_DEL [dm3] 2L_6118070_DEL [dm6]	GT	G	3.522e^-5	0.163	UPSTREAM CG31642 INTRON stai
X	15269119	X_15269119_SNP [dm3] X_15375086_SNP [dm6]	T	A	3.531e^-5	0.163	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3R	4197101	3R_4197101_SNP [dm3] 3R_8371379_SNP [dm6]	G	T	3.571e^-5	0.163	INTRON CG45263
3R	2035516	3R_2035516_SNP [dm3] 3R_6209794_SNP [dm6]	G	A	3.579e^-5	0.163	INTRON Osi2
3L	14983784	3L_14983784_SNP [dm3] 3L_14990684_SNP [dm6]	C	G	3.589e^-5	0.163	SYNONYMOUS_CODING mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	19548038	3L_19548038_INS [dm3] 3L_19554938_INS [dm6]	T	TT	3.613e^-5	0.163	DOWNSTREAM CR44677 & 1 other INTERGENIC
X	10812106	X_10812106_SNP [dm3] X_10918073_SNP [dm6]	C	T	3.624e^-5	0.163	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5479083	3L_5479083_SNP [dm3] 3L_5485983_SNP [dm6]	A	G	3.627e^-5	0.163	INTERGENIC
2L	7193920	2L_7193920_SNP [dm3] 2L_7193920_SNP [dm6]	T	A	3.645e^-5	0.163	DOWNSTREAM CG4502 INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
3R	9590575	3R_9590575_SNP [dm3] 3R_13764853_SNP [dm6]	A	T	3.690e^-5	0.163	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	9871793	3R_9871793_SNP [dm3] 3R_14046071_SNP [dm6]	A	T	3.699e^-5	0.163	INTERGENIC
2L	2968459	2L_2968459_SNP [dm3] 2L_2968459_SNP [dm6]	A	C	3.703e^-5	0.163	UTR_3_PRIME Ts DOWNSTREAM Ts & 1 other
3R	4806578	3R_4806578_SNP [dm3] 3R_8980856_SNP [dm6]	C	A	3.714e^-5	0.163	UPSTREAM CAHbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8219514	3L_8219514_SNP [dm3] 3L_8226414_SNP [dm6]	C	T	3.750e^-5	0.163	INTERGENIC
2L	14011224	2L_14011224_SNP [dm3] 2L_14011224_SNP [dm6]	T	C	3.772e^-5	0.163	UPSTREAM tRNA:Q:34E INTERGENIC
2R	17934364	2R_17934364_SNP [dm3] 2R_22046859_SNP [dm6]	C	A	3.774e^-5	0.163	INTERGENIC
2R	4784003	2R_4784003_SNP [dm3] 2R_8896498_SNP [dm6]	A	T	3.812e^-5	0.163	NON_SYNONYMOUS_CODING Sec31	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4868144	3R_4868144_SNP [dm3] 3R_9042422_SNP [dm6]	C	A	3.815e^-5	0.163	DOWNSTREAM Nmdmc & 1 other INTERGENIC
3R	4868145	3R_4868145_SNP [dm3] 3R_9042423_SNP [dm6]	A	G	3.815e^-5	0.163	DOWNSTREAM Nmdmc & 1 other INTERGENIC
3L	3496821	3L_3496821_SNP [dm3] 3L_3496821_SNP [dm6]	G	T	3.827e^-5	0.163	INTRON CG42324
2L	4337127	2L_4337127_SNP [dm3] 2L_4337127_SNP [dm6]	C	T	3.831e^-5	0.163	INTRON Atet	TF binding site BDTNP1_TFBS_da
2L	4338949	2L_4338949_SNP [dm3] 2L_4338949_SNP [dm6]	T	C	3.831e^-5	0.163	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4339710	2L_4339710_SNP [dm3] 2L_4339710_SNP [dm6]	T	A	3.831e^-5	0.163	INTRON Atet	TF binding site mE1_TFBS_inv
2L	4339715	2L_4339715_SNP [dm3] 2L_4339715_SNP [dm6]	A	T	3.831e^-5	0.163	INTRON Atet	TF binding site mE1_TFBS_inv
X	14947510	X_14947510_SNP [dm3] X_15053477_SNP [dm6]	T	C	3.831e^-5	0.163	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14949378	X_14949378_SNP [dm3] X_15055345_SNP [dm6]	A	T	3.831e^-5	0.163	INTRON hiw
X	14951095	X_14951095_SNP [dm3] X_15057062_SNP [dm6]	A	G	3.831e^-5	0.163	INTRON hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11750581	2R_11750581_SNP [dm3] 2R_15863076_SNP [dm6]	G	A	3.841e^-5	0.163	UPSTREAM Gpo-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1875410	3R_1875410_SNP [dm3] 3R_6049688_SNP [dm6]	T	G	3.860e^-5	0.163	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1875439	3R_1875439_SNP [dm3] 3R_6049717_SNP [dm6]	C	T	3.860e^-5	0.163	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1876114	3R_1876114_SNP [dm3] 3R_6050392_SNP [dm6]	T	A	3.860e^-5	0.163	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1879749	3R_1879749_SNP [dm3] 3R_6054027_SNP [dm6]	C	T	3.860e^-5	0.163	UPSTREAM CR44921 DOWNSTREAM CG15580 INTERGENIC
3R	1884062	3R_1884062_SNP [dm3] 3R_6058340_SNP [dm6]	C	A	3.860e^-5	0.163	UPSTREAM CG15580 INTERGENIC	TF binding site mE1_TFBS_inv
3R	1896774	3R_1896774_SNP [dm3] 3R_6071052_SNP [dm6]	C	T	3.860e^-5	0.163	INTERGENIC
3R	1897185	3R_1897185_SNP [dm3] 3R_6071463_SNP [dm6]	G	A	3.860e^-5	0.163	INTERGENIC
3R	1902141	3R_1902141_SNP [dm3] 3R_6076419_SNP [dm6]	G	A	3.860e^-5	0.163	DOWNSTREAM Or83c INTERGENIC
3R	1902831	3R_1902831_DEL [dm3] 3R_6077109_DEL [dm6]	AG	A	3.860e^-5	0.163	INTRON Or83c
3R	1906816	3R_1906816_SNP [dm3] 3R_6081094_SNP [dm6]	G	A	3.860e^-5	0.163	INTERGENIC
3R	1909458	3R_1909458_SNP [dm3] 3R_6083736_SNP [dm6]	T	C	3.860e^-5	0.163	INTERGENIC
3R	1909923	3R_1909923_SNP [dm3] 3R_6084201_SNP [dm6]	C	T	3.860e^-5	0.163	INTERGENIC
3R	1917711	3R_1917711_SNP [dm3] 3R_6091989_SNP [dm6]	G	A	3.860e^-5	0.163	INTRON Gasp
3R	1921951	3R_1921951_SNP [dm3] 3R_6096229_SNP [dm6]	G	C	3.860e^-5	0.163	INTRON Gasp
3R	1925634	3R_1925634_SNP [dm3] 3R_6099912_SNP [dm6]	G	C	3.860e^-5	0.163	INTRON Gasp	TF binding site BDTNP1_TFBS_prd
3R	1925830	3R_1925830_SNP [dm3] 3R_6100108_SNP [dm6]	T	C	3.860e^-5	0.163	INTRON Gasp	TF binding site mE1_TFBS_sens
3R	1946255	3R_1946255_SNP [dm3] 3R_6120533_SNP [dm6]	C	T	3.860e^-5	0.163	INTERGENIC
3R	1953702	3R_1953702_SNP [dm3] 3R_6127980_SNP [dm6]	G	A	3.860e^-5	0.163	UPSTREAM CR43487 INTERGENIC
3R	1962521	3R_1962521_SNP [dm3] 3R_6136799_SNP [dm6]	A	G	3.860e^-5	0.163	INTERGENIC	TF binding site mE1_TFBS_cad
3R	1995912	3R_1995912_SNP [dm3] 3R_6170190_SNP [dm6]	C	T	3.860e^-5	0.163	SYNONYMOUS_CODING CG1077	TF binding site mE1_TFBS_cad
3R	4649802	3R_4649802_INS [dm3] 3R_8824080_INS [dm6]	T	TGCTTATTTCAATT...	3.869e^-5	0.163	UTR_5_PRIME CG9836 UPSTREAM CG8379	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4253729	3R_4253729_SNP [dm3] 3R_8428007_SNP [dm6]	C	A	3.883e^-5	0.163	INTRON CG45263
3L	15880172	3L_15880172_SNP [dm3] 3L_15887072_SNP [dm6]	T	G	3.926e^-5	0.163	INTRON pHCl
2L	11937306	2L_11937306_SNP [dm3] 2L_11937306_SNP [dm6]	G	A	3.931e^-5	0.163	SYNONYMOUS_CODING Or33b UPSTREAM Or33c
2L	7643734	2L_7643734_SNP [dm3] 2L_7643734_SNP [dm6]	G	A	3.941e^-5	0.163	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
X	12997588	X_12997588_SNP [dm3] X_13103555_SNP [dm6]	G	C	3.945e^-5	0.163	INTRON CG43313
2R	4810063	2R_4810063_SNP [dm3] 2R_8922558_SNP [dm6]	C	T	3.947e^-5	0.163	UPSTREAM CG8243 INTRON Spt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	4815397	2R_4815397_SNP [dm3] 2R_8927892_SNP [dm6]	G	T	3.947e^-5	0.163	UPSTREAM PAN2 INTRON CG8235	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7278071	2R_7278071_SNP [dm3] 2R_11390566_SNP [dm6]	G	T	3.966e^-5	0.163	INTRON sprt
2R	7278073	2R_7278073_SNP [dm3] 2R_11390568_SNP [dm6]	C	T	3.966e^-5	0.163	INTRON sprt
2R	7278078	2R_7278078_DEL [dm3] 2R_11390573_DEL [dm6]	TAT	G	3.966e^-5	0.163	INTRON sprt
2R	7278085	2R_7278085_SNP [dm3] 2R_11390580_SNP [dm6]	A	C	3.966e^-5	0.163	INTRON sprt
2R	7278086	2R_7278086_SNP [dm3] 2R_11390581_SNP [dm6]	C	T	3.966e^-5	0.163	INTRON sprt
X	21185777	X_21185777_SNP [dm3] X_21314750_SNP [dm6]	C	T	3.973e^-5	0.163	INTRON CG1801
3R	2032250	3R_2032250_SNP [dm3] 3R_6206528_SNP [dm6]	C	T	3.977e^-5	0.163	INTRON Osi24
3R	1900697	3R_1900697_SNP [dm3] 3R_6074975_SNP [dm6]	T	C	3.993e^-5	0.163	INTERGENIC
3R	1910449	3R_1910449_SNP [dm3] 3R_6084727_SNP [dm6]	T	A	3.993e^-5	0.163	INTERGENIC	TF binding site mE1_TFBS_inv
X	12325681	X_12325681_SNP [dm3] X_12431648_SNP [dm6]	T	G	3.994e^-5	0.163	UPSTREAM Pkcdelta INTERGENIC
3L	2084607	3L_2084607_SNP [dm3] 3L_2084607_SNP [dm6]	A	G	3.998e^-5	0.163	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3L	5891125	3L_5891125_SNP [dm3] 3L_5898025_SNP [dm6]	T	C	4.001e^-5	0.163	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5891129	3L_5891129_SNP [dm3] 3L_5898029_SNP [dm6]	G	C	4.001e^-5	0.163	NON_SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19855285	2L_19855285_SNP [dm3] 2L_19855285_SNP [dm6]	G	A	4.010e^-5	0.163	INTRON sick
3L	5479055	3L_5479055_SNP [dm3] 3L_5485955_SNP [dm6]	T	G	4.026e^-5	0.164	INTERGENIC
3L	288489	3L_288489_SNP [dm3] 3L_288489_SNP [dm6]	T	A	4.063e^-5	0.165	INTRON RhoGEF3	TF binding site mE1_TFBS_chinmo
3R	8383604	3R_8383604_SNP [dm3] 3R_12557882_SNP [dm6]	T	C	4.084e^-5	0.165	INTRON Octbeta2R
3R	10773228	3R_10773228_SNP [dm3] 3R_14947506_SNP [dm6]	C	A	4.089e^-5	0.165	INTERGENIC
X	10818055	X_10818055_SNP [dm3] X_10924022_SNP [dm6]	T	A	4.097e^-5	0.165	UTR_5_PRIME v DOWNSTREAM CG43901
2L	10097739	2L_10097739_SNP [dm3] 2L_10097739_SNP [dm6]	C	A	4.102e^-5	0.165	INTRON CG34109 & 1 other
2R	4788609	2R_4788609_SNP [dm3] 2R_8901104_SNP [dm6]	G	A	4.133e^-5	0.166	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19330145	2L_19330145_SNP [dm3] 2L_19330145_SNP [dm6]	G	A	4.147e^-5	0.166	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18431480	2L_18431480_SNP [dm3] 2L_18431480_SNP [dm6]	G	A	4.189e^-5	0.167	INTERGENIC
3R	6115107	3R_6115107_SNP [dm3] 3R_10289385_SNP [dm6]	T	A	4.235e^-5	0.168	INTRON CG43143	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8561549	3L_8561549_SNP [dm3] 3L_8568449_SNP [dm6]	G	T	4.260e^-5	0.168	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM CR43910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2040666	3R_2040666_DEL [dm3] 3R_6214944_DEL [dm6]	AA	A	4.264e^-5	0.168	UPSTREAM Osi3 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4864153	3R_4864153_DEL [dm3] 3R_9038431_DEL [dm6]	TCTT	T	4.281e^-5	0.168	UPSTREAM hyx INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9319274	2R_9319274_SNP [dm3] 2R_13431769_SNP [dm6]	G	A	4.288e^-5	0.168	UPSTREAM tRNA:I:49Fd & 3 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8383583	3R_8383583_SNP [dm3] 3R_12557861_SNP [dm6]	G	A	4.288e^-5	0.168	INTRON Octbeta2R
2R	13260001	2R_13260001_SNP [dm3] 2R_17372496_SNP [dm6]	C	T	4.290e^-5	0.168	INTRON mbl
2L	4339720	2L_4339720_SNP [dm3] 2L_4339720_SNP [dm6]	A	C	4.291e^-5	0.168	INTRON Atet	TF binding site mE1_TFBS_inv
3R	4849992	3R_4849992_SNP [dm3] 3R_9024270_SNP [dm6]	A	G	4.306e^-5	0.168	DOWNSTREAM CR31429 INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	4954562	3R_4954562_SNP [dm3] 3R_9128840_SNP [dm6]	A	T	4.306e^-5	0.168	INTRON pum	TF binding site mE1_TFBS_Trl
2L	19722640	2L_19722640_SNP [dm3] 2L_19722640_SNP [dm6]	G	A	4.312e^-5	0.168	INTRON Lar
2L	13084367	2L_13084367_SNP [dm3] 2L_13084367_SNP [dm6]	C	T	4.312e^-5	0.168	INTERGENIC
3R	4815968	3R_4815968_SNP [dm3] 3R_8990246_SNP [dm6]	G	C	4.324e^-5	0.168	NON_SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
3R	4817823	3R_4817823_SNP [dm3] 3R_8992101_SNP [dm6]	G	A	4.324e^-5	0.168	NON_SYNONYMOUS_CODING E_var_3-9	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
X	15462214	X_15462214_SNP [dm3] X_15568181_SNP [dm6]	A	C	4.333e^-5	0.168	UPSTREAM CG7860 INTERGENIC
2L	13094735	2L_13094735_SNP [dm3] 2L_13094735_SNP [dm6]	C	A	4.354e^-5	0.168	INTERGENIC
2R	2082433	2R_2082433_SNP [dm3] 2R_6194928_SNP [dm6]	G	C	4.355e^-5	0.168	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2968439	2L_2968439_DEL [dm3] 2L_2968439_DEL [dm6]	ACTGTTTCCGTG...	A	4.373e^-5	0.168	UTR_3_PRIME Ts DOWNSTREAM Ts & 1 other
2L	3142178	2L_3142178_SNP [dm3] 2L_3142178_SNP [dm6]	C	A	4.374e^-5	0.168	INTRON toc
2L	5788435	2L_5788435_SNP [dm3] 2L_5788435_SNP [dm6]	C	G	4.398e^-5	0.168	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10603263	2R_10603263_SNP [dm3] 2R_14715758_SNP [dm6]	T	G	4.429e^-5	0.168	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12492190	2R_12492190_SNP [dm3] 2R_16604685_SNP [dm6]	A	T	4.457e^-5	0.168	UPSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	19722643	2L_19722643_SNP [dm3] 2L_19722643_SNP [dm6]	G	A	4.461e^-5	0.168	INTRON Lar
3R	4861231	3R_4861231_SNP [dm3] 3R_9035509_SNP [dm6]	A	G	4.463e^-5	0.168	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	1896434	3R_1896434_SNP [dm3] 3R_6070712_SNP [dm6]	A	G	4.466e^-5	0.168	INTERGENIC
3R	1896773	3R_1896773_SNP [dm3] 3R_6071051_SNP [dm6]	T	C	4.466e^-5	0.168	INTERGENIC
3R	1950218	3R_1950218_SNP [dm3] 3R_6124496_SNP [dm6]	C	G	4.466e^-5	0.168	DOWNSTREAM Vha14-2 INTERGENIC
3R	1970007	3R_1970007_SNP [dm3] 3R_6144285_SNP [dm6]	C	G	4.466e^-5	0.168	INTERGENIC
3R	10771778	3R_10771778_SNP [dm3] 3R_14946056_SNP [dm6]	C	T	4.523e^-5	0.17	INTERGENIC
2R	4817843	2R_4817843_SNP [dm3] 2R_8930338_SNP [dm6]	C	T	4.527e^-5	0.17	SYNONYMOUS_CODING PAN2
3L	2561463	3L_2561463_SNP [dm3] 3L_2561463_SNP [dm6]	A	T	4.563e^-5	0.17	INTRON msn
3R	4801289	3R_4801289_SNP [dm3] 3R_8975567_SNP [dm6]	C	T	4.615e^-5	0.17	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5479057	3L_5479057_SNP [dm3] 3L_5485957_SNP [dm6]	G	C	4.632e^-5	0.17	INTERGENIC
3R	5466017	3R_5466017_SNP [dm3] 3R_9640295_SNP [dm6]	A	T	4.641e^-5	0.17	UPSTREAM Dh44 INTRON Dh44
3R	1924573	3R_1924573_SNP [dm3] 3R_6098851_SNP [dm6]	G	C	4.643e^-5	0.17	INTRON Gasp	TF binding site BDTNP1_TFBS_prd
3R	4799846	3R_4799846_SNP [dm3] 3R_8974124_SNP [dm6]	C	G	4.647e^-5	0.17	INTERGENIC
3R	4802404	3R_4802404_SNP [dm3] 3R_8976682_SNP [dm6]	T	C	4.647e^-5	0.17	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	4804535	3R_4804535_SNP [dm3] 3R_8978813_SNP [dm6]	T	C	4.647e^-5	0.17	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4806703	3R_4806703_SNP [dm3] 3R_8980981_SNP [dm6]	T	C	4.647e^-5	0.17	UTR_5_PRIME CAHbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15421266	X_15421266_SNP [dm3] X_15527233_SNP [dm6]	A	C	4.664e^-5	0.17	INTRON Ac13E
3R	2684408	3R_2684408_INS [dm3] 3R_6858686_INS [dm6]	A	ATATATGCG	4.666e^-5	0.17	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2684414	3R_2684414_SNP [dm3] 3R_6858692_SNP [dm6]	G	T	4.666e^-5	0.17	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2684419	3R_2684419_SNP [dm3] 3R_6858697_SNP [dm6]	C	A	4.666e^-5	0.17	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20561233	2L_20561233_SNP [dm3] 2L_20561233_SNP [dm6]	C	A	4.670e^-5	0.17	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1937049	3R_1937049_SNP [dm3] 3R_6111327_SNP [dm6]	T	A	4.678e^-5	0.17	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
X	10808008	X_10808008_SNP [dm3] X_10913975_SNP [dm6]	A	G	4.695e^-5	0.17	INTRON CG43901
2R	7022390	2R_7022390_SNP [dm3] 2R_11134885_SNP [dm6]	T	A	4.700e^-5	0.17	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	1907618	3R_1907618_SNP [dm3] 3R_6081896_SNP [dm6]	G	T	4.705e^-5	0.17	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17237785	2L_17237785_SNP [dm3] 2L_17237785_SNP [dm6]	G	C	4.790e^-5	0.173	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4822806	3R_4822806_SNP [dm3] 3R_8997084_SNP [dm6]	C	T	4.796e^-5	0.173	UPSTREAM CG11977 INTRON CG31100
3R	2069541	3R_2069541_SNP [dm3] 3R_6243819_SNP [dm6]	A	G	4.803e^-5	0.173	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18464474	2L_18464474_SNP [dm3] 2L_18464474_SNP [dm6]	C	T	4.881e^-5	0.175	INTRON let-7-C
2R	10152160	2R_10152160_SNP [dm3] 2R_14264655_SNP [dm6]	T	A	4.909e^-5	0.176	INTRON CG8547	TF binding site mE1_TFBS_cad
3R	4574037	3R_4574037_SNP [dm3] 3R_8748315_SNP [dm6]	A	C	4.981e^-5	0.177	UPSTREAM CG9801 DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4574510	3R_4574510_SNP [dm3] 3R_8748788_SNP [dm6]	T	C	4.981e^-5	0.177	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4574698	3R_4574698_SNP [dm3] 3R_8748976_SNP [dm6]	A	G	4.981e^-5	0.177	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4574730	3R_4574730_SNP [dm3] 3R_8749008_SNP [dm6]	G	A	4.981e^-5	0.177	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4249542	3R_4249542_SNP [dm3] 3R_8423820_SNP [dm6]	T	C	4.983e^-5	0.177	INTRON CG45263
3R	4826860	3R_4826860_SNP [dm3] 3R_9001138_SNP [dm6]	G	T	4.997e^-5	0.177	INTRON CG31100
3R	4826964	3R_4826964_SNP [dm3] 3R_9001242_SNP [dm6]	A	G	4.997e^-5	0.177	INTRON CG31100
3R	4573004	3R_4573004_SNP [dm3] 3R_8747282_SNP [dm6]	C	T	5.068e^-5	0.179	UPSTREAM CG8223 INTRON CG9801	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5465830	3R_5465830_SNP [dm3] 3R_9640108_SNP [dm6]	G	A	5.086e^-5	0.179	UPSTREAM Dh44 INTRON Dh44
3L	14818158	3L_14818158_SNP [dm3] 3L_14825058_SNP [dm6]	A	T	5.098e^-5	0.179	INTRON CG17839
2L	13471567	2L_13471567_SNP [dm3] 2L_13471567_SNP [dm6]	G	C	5.153e^-5	0.18	INTRON CG42784
2L	13471570	2L_13471570_DEL [dm3] 2L_13471570_DEL [dm6]	TA	T	5.153e^-5	0.18	INTRON CG42784
2L	13471648	2L_13471648_SNP [dm3] 2L_13471648_SNP [dm6]	G	A	5.153e^-5	0.18	INTRON CG42784
2L	13471688	2L_13471688_SNP [dm3] 2L_13471688_SNP [dm6]	T	A	5.153e^-5	0.18	INTRON CG42784
2L	13471690	2L_13471690_SNP [dm3] 2L_13471690_SNP [dm6]	G	T	5.153e^-5	0.18	INTRON CG42784
2L	13471579	2L_13471579_SNP [dm3] 2L_13471579_SNP [dm6]	T	A	5.164e^-5	0.18	INTRON CG42784
3R	1969411	3R_1969411_SNP [dm3] 3R_6143689_SNP [dm6]	G	A	5.259e^-5	0.182	INTERGENIC
3R	6499775	3R_6499775_SNP [dm3] 3R_10674053_SNP [dm6]	T	A	5.263e^-5	0.182	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11604000	2R_11604000_SNP [dm3] 2R_15716495_SNP [dm6]	G	T	5.281e^-5	0.182	INTERGENIC
3L	15732484	3L_15732484_SNP [dm3] 3L_15739384_SNP [dm6]	G	A	5.286e^-5	0.182	INTERGENIC
2L	11937351	2L_11937351_SNP [dm3] 2L_11937351_SNP [dm6]	C	T	5.295e^-5	0.182	SYNONYMOUS_CODING Or33b UPSTREAM Or33c
3L	15880196	3L_15880196_SNP [dm3] 3L_15887096_SNP [dm6]	G	A	5.301e^-5	0.182	INTRON pHCl
2R	6855768	2R_6855768_SNP [dm3] 2R_10968263_SNP [dm6]	G	C	5.307e^-5	0.182	INTERGENIC
X	3219679	X_3219679_SNP [dm3] X_3325646_SNP [dm6]	G	A	5.318e^-5	0.182	INTRON CR44886 & 1 other
3R	4249222	3R_4249222_SNP [dm3] 3R_8423500_SNP [dm6]	A	G	5.364e^-5	0.182	INTRON CG45263	TF binding site mE1_TFBS_inv
3R	8140244	3R_8140244_SNP [dm3] 3R_12314522_SNP [dm6]	T	C	5.365e^-5	0.182	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4820467	3R_4820467_SNP [dm3] 3R_8994745_SNP [dm6]	T	A	5.367e^-5	0.182	UTR_3_PRIME CG11975 DOWNSTREAM CG31100
3R	4823780	3R_4823780_SNP [dm3] 3R_8998058_SNP [dm6]	G	A	5.367e^-5	0.182	NON_SYNONYMOUS_CODING CG11977 INTRON CG31100
3L	5479066	3L_5479066_SNP [dm3] 3L_5485966_SNP [dm6]	A	C	5.376e^-5	0.182	INTERGENIC
2R	10603143	2R_10603143_SNP [dm3] 2R_14715638_SNP [dm6]	A	C	5.390e^-5	0.182	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5637029	3L_5637029_SNP [dm3] 3L_5643929_SNP [dm6]	G	A	5.400e^-5	0.182	INTRON Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4824360	3R_4824360_SNP [dm3] 3R_8998638_SNP [dm6]	A	C	5.400e^-5	0.182	SYNONYMOUS_CODING CG11977 INTRON CG31100
2L	2878628	2L_2878628_SNP [dm3] 2L_2878628_SNP [dm6]	G	A	5.402e^-5	0.182	NON_SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16852362	2R_16852362_SNP [dm3] 2R_20964857_SNP [dm6]	G	A	5.411e^-5	0.182	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	5.432e^-5	0.182	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	4251822	3R_4251822_SNP [dm3] 3R_8426100_SNP [dm6]	A	C	5.437e^-5	0.182	INTRON CG45263
X	2214999	X_2214999_SNP [dm3] X_2320966_SNP [dm6]	G	A	5.450e^-5	0.182	DOWNSTREAM CR34052 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8703145	2R_8703145_SNP [dm3] 2R_12815640_SNP [dm6]	G	C	5.484e^-5	0.183	INTERGENIC
2R	11603882	2R_11603882_SNP [dm3] 2R_15716377_SNP [dm6]	T	G	5.513e^-5	0.184	INTERGENIC
X	14964247	X_14964247_SNP [dm3] X_15070214_SNP [dm6]	A	G	5.526e^-5	0.184	UTR_3_PRIME Lsd-2
3R	4567271	3R_4567271_SNP [dm3] 3R_8741549_SNP [dm6]	T	A	5.580e^-5	0.185	INTRON CG9801
2R	7692186	2R_7692186_SNP [dm3] 2R_11804681_SNP [dm6]	T	A	5.621e^-5	0.186	INTRON ths
3R	4573233	3R_4573233_SNP [dm3] 3R_8747511_SNP [dm6]	G	C	5.630e^-5	0.186	UTR_5_PRIME CG9801 UPSTREAM CG8223 INTRON CG9801	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9405334	2L_9405334_SNP [dm3] 2L_9405334_SNP [dm6]	C	T	5.632e^-5	0.186	INTRON Shawl
2L	9405370	2L_9405370_SNP [dm3] 2L_9405370_SNP [dm6]	A	T	5.632e^-5	0.186	INTRON Shawl
3R	4225622	3R_4225622_SNP [dm3] 3R_8399900_SNP [dm6]	C	T	5.691e^-5	0.187	INTRON CG45263
2R	7278162	2R_7278162_SNP [dm3] 2R_11390657_SNP [dm6]	T	C	5.717e^-5	0.188	INTRON sprt
2L	19928066	2L_19928066_SNP [dm3] 2L_19928066_SNP [dm6]	C	G	5.733e^-5	0.188	INTRON sick
X	10819818	X_10819818_SNP [dm3] X_10925785_SNP [dm6]	G	T	5.768e^-5	0.189	DOWNSTREAM v INTERGENIC
3R	4885793	3R_4885793_SNP [dm3] 3R_9060071_SNP [dm6]	C	T	5.777e^-5	0.189	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4583757	3R_4583757_SNP [dm3] 3R_8758035_SNP [dm6]	C	A	5.781e^-5	0.189	INTRON CG11768 & 1 other
3R	2130210	3R_2130210_SNP [dm3] 3R_6304488_SNP [dm6]	G	T	5.789e^-5	0.189	UPSTREAM Osi16 DOWNSTREAM Osi15 INTERGENIC
2R	18226486	2R_18226486_INS [dm3] 2R_22338981_INS [dm6]	G	GAG	5.802e^-5	0.189	INTRON Liprin-gamma
3R	4807098	3R_4807098_SNP [dm3] 3R_8981376_SNP [dm6]	C	A	5.832e^-5	0.189	INTRON CAHbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4329875	2L_4329875_SNP [dm3] 2L_4329875_SNP [dm6]	C	T	5.974e^-5	0.193	SYNONYMOUS_CODING CG16857
X	6476862	X_6476862_SNP [dm3] X_6582829_SNP [dm6]	G	A	5.977e^-5	0.193	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17767146	2R_17767146_SNP [dm3] 2R_21879641_SNP [dm6]	G	A	5.988e^-5	0.193	INTRON Fili
2R	17767154	2R_17767154_SNP [dm3] 2R_21879649_SNP [dm6]	G	T	5.988e^-5	0.193	INTRON Fili
2R	17767193	2R_17767193_SNP [dm3] 2R_21879688_SNP [dm6]	T	C	5.988e^-5	0.193	INTRON Fili
3R	4638550	3R_4638550_SNP [dm3] 3R_8812828_SNP [dm6]	T	C	6.041e^-5	0.193	DOWNSTREAM CG9821 INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	2153481	3R_2153481_DEL [dm3] 3R_6327759_DEL [dm6]	AGTTA	A	6.049e^-5	0.193	DOWNSTREAM Osi17 INTERGENIC
3L	15880225	3L_15880225_SNP [dm3] 3L_15887125_SNP [dm6]	T	G	6.054e^-5	0.193	INTRON pHCl
3R	4249431	3R_4249431_SNP [dm3] 3R_8423709_SNP [dm6]	C	T	6.056e^-5	0.193	INTRON CG45263
2R	1705176	2R_1705176_SNP [dm3] 2R_5817671_SNP [dm6]	T	A	6.072e^-5	0.193	INTRON dpr12
X	16140281	X_16140281_SNP [dm3] X_16246248_SNP [dm6]	C	G	6.072e^-5	0.193	INTERGENIC
2L	13281732	2L_13281732_SNP [dm3] 2L_13281732_SNP [dm6]	A	G	6.078e^-5	0.193	UTR_3_PRIME CG44085 INTRON CG44085
2L	19833389	2L_19833389_SNP [dm3] 2L_19833389_SNP [dm6]	A	T	6.103e^-5	0.193	INTRON sick
3R	24629952	3R_24629952_SNP [dm3] 3R_28804230_SNP [dm6]	G	T	6.108e^-5	0.193	INTERGENIC
3R	24629955	3R_24629955_SNP [dm3] 3R_28804233_SNP [dm6]	G	T	6.108e^-5	0.193	INTERGENIC
2L	15624862	2L_15624862_SNP [dm3] 2L_15624862_SNP [dm6]	G	C	6.109e^-5	0.193	INTERGENIC
2L	12419783	2L_12419783_SNP [dm3] 2L_12419783_SNP [dm6]	T	A	6.120e^-5	0.193	INTRON vir-1
3R	2011281	3R_2011281_SNP [dm3] 3R_6185559_SNP [dm6]	G	C	6.146e^-5	0.193	EXON CR31562
2L	11304453	2L_11304453_SNP [dm3] 2L_11304453_SNP [dm6]	C	T	6.168e^-5	0.194	INTERGENIC
3R	9590632	3R_9590632_SNP [dm3] 3R_13764910_SNP [dm6]	G	C	6.174e^-5	0.194	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
2L	13714817	2L_13714817_SNP [dm3] 2L_13714817_SNP [dm6]	C	T	6.238e^-5	0.195	INTRON CG31814
2L	13714820	2L_13714820_SNP [dm3] 2L_13714820_SNP [dm6]	T	A	6.238e^-5	0.195	INTRON CG31814
2L	2968497	2L_2968497_SNP [dm3] 2L_2968497_SNP [dm6]	C	T	6.257e^-5	0.195	UTR_3_PRIME Ts DOWNSTREAM Ts & 1 other
2L	2968526	2L_2968526_SNP [dm3] 2L_2968526_SNP [dm6]	G	A	6.257e^-5	0.195	UTR_3_PRIME Ts DOWNSTREAM Rbp9
2L	2968625	2L_2968625_SNP [dm3] 2L_2968625_SNP [dm6]	G	T	6.257e^-5	0.195	NON_SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9	TF binding site BDTNP1_TFBS_dl
3R	4579671	3R_4579671_SNP [dm3] 3R_8753949_SNP [dm6]	C	T	6.271e^-5	0.195	UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 & 1 other UPSTREAM CR44228 DOWNSTREAM CG11768
3R	1893800	3R_1893800_SNP [dm3] 3R_6068078_SNP [dm6]	C	T	6.276e^-5	0.195	INTERGENIC
2R	17937080	2R_17937080_SNP [dm3] 2R_22049575_SNP [dm6]	T	C	6.319e^-5	0.195	INTERGENIC
2R	17937081	2R_17937081_DEL [dm3] 2R_22049576_DEL [dm6]	TC	T	6.319e^-5	0.195	INTERGENIC
2R	17937447	2R_17937447_SNP [dm3] 2R_22049942_SNP [dm6]	A	G	6.319e^-5	0.195	INTERGENIC
3R	1888327	3R_1888327_SNP [dm3] 3R_6062605_SNP [dm6]	G	A	6.468e^-5	0.198	INTERGENIC	TF binding site mE1_TFBS_HSA
X	7250197	X_7250197_SNP [dm3] X_7356164_SNP [dm6]	A	T	6.476e^-5	0.198	INTRON CR44357 & 1 other
2L	16524503	2L_16524503_SNP [dm3] 2L_16524503_SNP [dm6]	A	T	6.483e^-5	0.198	INTRON CG5953
2L	13436423	2L_13436423_SNP [dm3] 2L_13436423_SNP [dm6]	A	T	6.491e^-5	0.198	SYNONYMOUS_CODING Tehao INTRON CG42784
2L	13436424	2L_13436424_SNP [dm3] 2L_13436424_SNP [dm6]	T	C	6.491e^-5	0.198	SYNONYMOUS_CODING Tehao INTRON CG42784
3R	17357063	3R_17357063_SNP [dm3] 3R_21531341_SNP [dm6]	T	G	6.529e^-5	0.198	EXON CR43372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4954643	3R_4954643_SNP [dm3] 3R_9128921_SNP [dm6]	C	T	6.537e^-5	0.198	INTRON pum	TF binding site mE1_TFBS_Trl
3R	8358157	3R_8358157_SNP [dm3] 3R_12532435_SNP [dm6]	G	A	6.542e^-5	0.198	INTRON Octbeta3R
2R	12492204	2R_12492204_SNP [dm3] 2R_16604699_SNP [dm6]	A	G	6.550e^-5	0.198	UPSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	12492207	2R_12492207_INS [dm3] 2R_16604702_INS [dm6]	A	AGTA	6.550e^-5	0.198	UPSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	4419192	3R_4419192_SNP [dm3] 3R_8593470_SNP [dm6]	C	A	6.551e^-5	0.198	INTRON 5-HT2B
2R	4814819	2R_4814819_SNP [dm3] 2R_8927314_SNP [dm6]	G	A	6.559e^-5	0.198	NON_SYNONYMOUS_CODING CG8235 UPSTREAM PAN2 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15290981	2R_15290981_SNP [dm3] 2R_19403476_SNP [dm6]	A	G	6.573e^-5	0.199	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17568920	2R_17568920_SNP [dm3] 2R_21681415_SNP [dm6]	G	A	6.594e^-5	0.199	INTRON CG30263
2L	7642436	2L_7642436_SNP [dm3] 2L_7642436_SNP [dm6]	T	A	6.613e^-5	0.199	UTR_3_PRIME Slob	TF binding site mE1_TFBS_bab1
3R	22773375	3R_22773375_SNP [dm3] 3R_26947653_SNP [dm6]	G	T	6.618e^-5	0.199	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2104030	3R_2104030_SNP [dm3] 3R_6278308_SNP [dm6]	T	C	6.623e^-5	0.199	UPSTREAM Osi12 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19816058	2L_19816058_SNP [dm3] 2L_19816058_SNP [dm6]	A	T	6.721e^-5	0.201	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5254057	X_5254057_SNP [dm3] X_5360024_SNP [dm6]	C	A	6.734e^-5	0.201	INTRON SK
3R	4248578	3R_4248578_SNP [dm3] 3R_8422856_SNP [dm6]	T	A	6.738e^-5	0.201	INTRON CG45263
2L	18926563	2L_18926563_SNP [dm3] 2L_18926563_SNP [dm6]	C	G	6.749e^-5	0.201	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6893680	2R_6893680_SNP [dm3] 2R_11006175_SNP [dm6]	C	G	6.767e^-5	0.201	INTRON luna
2L	9225675	2L_9225675_SNP [dm3] 2L_9225675_SNP [dm6]	T	A	6.788e^-5	0.202	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3R	2856140	3R_2856140_INS [dm3] 3R_7030418_INS [dm6]	A	ACTCCAGCTGTACGA...	6.797e^-5	0.202	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10325701	2R_10325701_SNP [dm3] 2R_14438196_SNP [dm6]	G	A	6.805e^-5	0.202	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16772989	X_16772989_SNP [dm3] X_16878956_SNP [dm6]	G	C	6.815e^-5	0.202	INTERGENIC
2L	10963681	2L_10963681_SNP [dm3] 2L_10963681_SNP [dm6]	G	T	6.862e^-5	0.202	UTR_5_PRIME dpr2 INTRON dpr2
2L	10273103	2L_10273103_SNP [dm3] 2L_10273103_SNP [dm6]	A	G	6.876e^-5	0.202	SYNONYMOUS_CODING Utx UPSTREAM trk
3L	10716126	3L_10716126_SNP [dm3] 3L_10723026_SNP [dm6]	A	C	6.877e^-5	0.202	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7055435	2L_7055435_SNP [dm3] 2L_7055435_SNP [dm6]	T	C	6.887e^-5	0.202	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl
3R	5789226	3R_5789226_SNP [dm3] 3R_9963504_SNP [dm6]	G	A	6.893e^-5	0.202	INTRON Glut4EF
2L	20534736	2L_20534736_SNP [dm3] 2L_20534736_SNP [dm6]	G	A	6.904e^-5	0.202	INTERGENIC
3L	2458631	3L_2458631_INS [dm3] 3L_2458631_INS [dm6]	T	TGTAT	6.920e^-5	0.202	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	488234	2L_488234_SNP [dm3] 2L_488234_SNP [dm6]	A	T	6.931e^-5	0.202	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16756747	2L_16756747_SNP [dm3] 2L_16756747_SNP [dm6]	G	A	6.934e^-5	0.202	INTRON yellow-b
2R	17767555	2R_17767555_SNP [dm3] 2R_21880050_SNP [dm6]	T	A	6.989e^-5	0.203	INTRON Fili
2L	18036688	2L_18036688_SNP [dm3] 2L_18036688_SNP [dm6]	C	T	7.046e^-5	0.205	INTRON rdo
2L	18036758	2L_18036758_SNP [dm3] 2L_18036758_SNP [dm6]	A	C	7.046e^-5	0.205	INTRON rdo
2L	7193918	2L_7193918_SNP [dm3] 2L_7193918_SNP [dm6]	A	G	7.071e^-5	0.205	DOWNSTREAM CG4502 INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
X	18117476	X_18117476_SNP [dm3] X_18223443_SNP [dm6]	G	A	7.158e^-5	0.207	INTRON CG33639
3L	5897301	3L_5897301_SNP [dm3] 3L_5904201_SNP [dm6]	G	T	7.172e^-5	0.207	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
2R	4454826	2R_4454826_SNP [dm3] 2R_8567321_SNP [dm6]	C	A	7.195e^-5	0.208	UPSTREAM Cyp6a14 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2864520	2L_2864520_SNP [dm3] 2L_2864520_SNP [dm6]	T	C	7.211e^-5	0.208	INTRON CG2991
3R	5773679	3R_5773679_SNP [dm3] 3R_9947957_SNP [dm6]	G	T	7.239e^-5	0.208	INTRON Glut4EF
3R	5789049	3R_5789049_SNP [dm3] 3R_9963327_SNP [dm6]	G	C	7.239e^-5	0.208	INTRON Glut4EF
3R	5789331	3R_5789331_SNP [dm3] 3R_9963609_SNP [dm6]	C	A	7.239e^-5	0.208	INTRON Glut4EF
X	10812475	X_10812475_SNP [dm3] X_10918442_SNP [dm6]	C	T	7.268e^-5	0.208	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	7193752	2L_7193752_SNP [dm3] 2L_7193752_SNP [dm6]	G	T	7.286e^-5	0.208	INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	4252107	3R_4252107_SNP [dm3] 3R_8426385_SNP [dm6]	C	T	7.307e^-5	0.208	INTRON CG45263
2L	5290605	2L_5290605_SNP [dm3] 2L_5290605_SNP [dm6]	T	A	7.322e^-5	0.208	INTRON vri
2L	11320781	2L_11320781_SNP [dm3] 2L_11320781_SNP [dm6]	C	T	7.324e^-5	0.208	INTERGENIC
3L	3407081	3L_3407081_SNP [dm3] 3L_3407081_SNP [dm6]	T	C	7.372e^-5	0.209	INTRON sty
3L	13824613	3L_13824613_SNP [dm3] 3L_13831513_SNP [dm6]	C	T	7.387e^-5	0.21	INTERGENIC
2L	16494150	2L_16494150_SNP [dm3] 2L_16494150_SNP [dm6]	A	T	7.408e^-5	0.21	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4823138	3R_4823138_DEL [dm3] 3R_8997416_DEL [dm6]	ACAATTGACATAAACAAACT...	A	7.411e^-5	0.21	UPSTREAM CG11977 INTRON CG31100
2R	12492216	2R_12492216_SNP [dm3] 2R_16604711_SNP [dm6]	C	T	7.452e^-5	0.21	UPSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	5761007	3R_5761007_SNP [dm3] 3R_9935285_SNP [dm6]	T	A	7.460e^-5	0.21	INTRON Glut4EF
3R	5780934	3R_5780934_SNP [dm3] 3R_9955212_SNP [dm6]	G	A	7.460e^-5	0.21	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	5805763	3R_5805763_SNP [dm3] 3R_9980041_SNP [dm6]	G	T	7.460e^-5	0.21	INTRON Glut4EF	TF binding site mE1_TFBS_Trl
2L	2642327	2L_2642327_SNP [dm3] 2L_2642327_SNP [dm6]	G	A	7.482e^-5	0.21	INTERGENIC
X	12674564	X_12674564_SNP [dm3] X_12780531_SNP [dm6]	C	T	7.508e^-5	0.21	INTRON CG32647
2L	13550026	2L_13550026_SNP [dm3] 2L_13550026_SNP [dm6]	T	A	7.516e^-5	0.21	UPSTREAM kuz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6715326	3R_6715326_SNP [dm3] 3R_10889604_SNP [dm6]	G	A	7.519e^-5	0.21	UPSTREAM Adk3 DOWNSTREAM CG6621 INTRON Leash	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1059626	3L_1059626_SNP [dm3] 3L_1059626_SNP [dm6]	C	G	7.539e^-5	0.21	INTRON bab1
3R	8357252	3R_8357252_SNP [dm3] 3R_12531530_SNP [dm6]	G	A	7.549e^-5	0.21	INTRON Octbeta3R
2L	20530779	2L_20530779_SNP [dm3] 2L_20530779_SNP [dm6]	G	A	7.553e^-5	0.21	UPSTREAM CG44270 INTERGENIC
2L	10962377	2L_10962377_SNP [dm3] 2L_10962377_SNP [dm6]	T	C	7.555e^-5	0.21	INTRON dpr2
2R	10603140	2R_10603140_SNP [dm3] 2R_14715635_SNP [dm6]	A	T	7.591e^-5	0.21	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5317656	2R_5317656_SNP [dm3] 2R_9430151_SNP [dm6]	G	T	7.592e^-5	0.21	INTRON Pdk
3R	4536949	3R_4536949_SNP [dm3] 3R_8711227_SNP [dm6]	C	T	7.599e^-5	0.21	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4822536	3R_4822536_SNP [dm3] 3R_8996814_SNP [dm6]	T	C	7.629e^-5	0.211	SYNONYMOUS_CODING CG31100 UPSTREAM CG11977
2L	4799198	2L_4799198_SNP [dm3] 2L_4799198_SNP [dm6]	T	G	7.645e^-5	0.211	INTRON Clect27
3L	3720223	3L_3720223_SNP [dm3] 3L_3720223_SNP [dm6]	T	C	7.670e^-5	0.211	INTRON CG32264
2L	5290156	2L_5290156_SNP [dm3] 2L_5290156_SNP [dm6]	T	C	7.675e^-5	0.211	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22072966	2L_22072966_INS [dm3] 2L_22072966_INS [dm6]	T	TTCGATCT	7.678e^-5	0.211	DOWNSTREAM CG31702 INTERGENIC
3R	9599078	3R_9599078_SNP [dm3] 3R_13773356_SNP [dm6]	A	T	7.698e^-5	0.211	INTRON CG9297
2R	7022535	2R_7022535_SNP [dm3] 2R_11135030_SNP [dm6]	A	C	7.720e^-5	0.211	UPSTREAM BBS4 INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	9560653	3L_9560653_SNP [dm3] 3L_9567553_SNP [dm6]	C	T	7.763e^-5	0.212	INTRON CG42673
3L	22421457	3L_22421457_SNP [dm3] 3L_22428357_SNP [dm6]	T	C	7.772e^-5	0.212	INTERGENIC
2R	10603121	2R_10603121_SNP [dm3] 2R_14715616_SNP [dm6]	A	T	7.902e^-5	0.215	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10603134	2R_10603134_SNP [dm3] 2R_14715629_SNP [dm6]	G	T	7.902e^-5	0.215	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11412639	2L_11412639_SNP [dm3] 2L_11412639_SNP [dm6]	G	A	7.988e^-5	0.217	INTERGENIC	regulatory region REDfly_CRMs
2L	11404550	2L_11404550_SNP [dm3] 2L_11404550_SNP [dm6]	A	T	8.037e^-5	0.218	INTERGENIC	regulatory region REDfly_CRMs
3L	2602466	3L_2602466_SNP [dm3] 3L_2602466_SNP [dm6]	G	A	8.040e^-5	0.218	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11752906	2R_11752906_SNP [dm3] 2R_15865401_SNP [dm6]	A	G	8.061e^-5	0.218	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4253728	3R_4253728_SNP [dm3] 3R_8428006_SNP [dm6]	G	T	8.066e^-5	0.218	INTRON CG45263
2L	2968088	2L_2968088_SNP [dm3] 2L_2968088_SNP [dm6]	A	C	8.073e^-5	0.218	UTR_3_PRIME Rbp9 DOWNSTREAM Ts
2L	10312130	2L_10312130_SNP [dm3] 2L_10312130_SNP [dm6]	G	A	8.078e^-5	0.218	UPSTREAM CG5385 DOWNSTREAM CG5384 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16756823	2L_16756823_SNP [dm3] 2L_16756823_SNP [dm6]	T	G	8.100e^-5	0.218	INTRON yellow-b
3L	14480902	3L_14480902_INS [dm3] 3L_14487802_INS [dm6]	A	AA	8.143e^-5	0.218	INTRON bbg
3L	14480925	3L_14480925_SNP [dm3] 3L_14487825_SNP [dm6]	T	C	8.143e^-5	0.218	INTRON bbg
2L	16066894	2L_16066894_SNP [dm3] 2L_16066894_SNP [dm6]	T	C	8.151e^-5	0.218	INTRON beat-Ia
2R	10325695	2R_10325695_SNP [dm3] 2R_14438190_SNP [dm6]	T	A	8.177e^-5	0.218	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19323154	2L_19323154_SNP [dm3] 2L_19323154_SNP [dm6]	T	A	8.182e^-5	0.218	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	10818098	X_10818098_SNP [dm3] X_10924065_SNP [dm6]	C	A	8.216e^-5	0.219	DOWNSTREAM CG43901 INTRON v
2R	12492282	2R_12492282_SNP [dm3] 2R_16604777_SNP [dm6]	T	C	8.229e^-5	0.219	UPSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	8357090	3R_8357090_SNP [dm3] 3R_12531368_SNP [dm6]	G	C	8.236e^-5	0.219	INTRON Octbeta3R
2R	10152178	2R_10152178_SNP [dm3] 2R_14264673_SNP [dm6]	A	G	8.245e^-5	0.219	INTRON CG8547	TF binding site mE1_TFBS_cad
2L	5290722	2L_5290722_SNP [dm3] 2L_5290722_SNP [dm6]	C	A	8.246e^-5	0.219	INTRON vri
3R	4024979	3R_4024979_SNP [dm3] 3R_8199257_SNP [dm6]	C	T	8.308e^-5	0.22	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	4581068	3R_4581068_SNP [dm3] 3R_8755346_SNP [dm6]	C	G	8.343e^-5	0.22	NON_SYNONYMOUS_CODING CG11768 UTR_5_PRIME CG34135 EXON CR44228	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12502410	2L_12502410_SNP [dm3] 2L_12502410_SNP [dm6]	T	C	8.349e^-5	0.22	INTRON bun
X	2956969	X_2956969_SNP [dm3] X_3062936_SNP [dm6]	G	T	8.354e^-5	0.22	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10764744	3L_10764744_SNP [dm3] 3L_10771644_SNP [dm6]	G	A	8.388e^-5	0.221	UPSTREAM CG43245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	5128320	3R_5128320_DEL [dm3] 3R_9302598_DEL [dm6]	GG	G	8.445e^-5	0.222	INTRON CG8861
3R	5374870	3R_5374870_SNP [dm3] 3R_9549148_SNP [dm6]	T	C	8.490e^-5	0.222	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1833711	3L_1833711_SNP [dm3] 3L_1833711_SNP [dm6]	G	A	8.504e^-5	0.222	INTRON Cpr62Bb
3L	1834280	3L_1834280_SNP [dm3] 3L_1834280_SNP [dm6]	T	A	8.504e^-5	0.222	INTRON Cpr62Bb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4854479	3R_4854479_SNP [dm3] 3R_9028757_SNP [dm6]	C	A	8.513e^-5	0.222	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4854506	3R_4854506_SNP [dm3] 3R_9028784_SNP [dm6]	C	T	8.513e^-5	0.222	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5290493	2L_5290493_SNP [dm3] 2L_5290493_SNP [dm6]	A	G	8.568e^-5	0.223	INTRON vri	TF binding site BDTNP1_TFBS_dl
3L	62694	3L_62694_SNP [dm3] 3L_62694_SNP [dm6]	C	G	8.587e^-5	0.223	INTERGENIC
3R	4828618	3R_4828618_SNP [dm3] 3R_9002896_SNP [dm6]	G	C	8.605e^-5	0.224	INTRON CG31100
3R	8358236	3R_8358236_SNP [dm3] 3R_12532514_SNP [dm6]	A	G	8.624e^-5	0.224	INTRON Octbeta3R
2L	12503014	2L_12503014_SNP [dm3] 2L_12503014_SNP [dm6]	C	T	8.641e^-5	0.224	INTRON bun
2L	4027233	2L_4027233_SNP [dm3] 2L_4027233_SNP [dm6]	T	A	8.650e^-5	0.224	INTERGENIC
2R	14004895	2R_14004895_SNP [dm3] 2R_18117390_SNP [dm6]	C	G	8.668e^-5	0.224	DOWNSTREAM stau INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6656086	3L_6656086_SNP [dm3] 3L_6662986_SNP [dm6]	T	A	8.679e^-5	0.224	INTERGENIC
2L	10145149	2L_10145149_SNP [dm3] 2L_10145149_SNP [dm6]	A	G	8.719e^-5	0.224	UTR_5_PRIME CG4839 INTRON CG44153
3R	6259266	3R_6259266_SNP [dm3] 3R_10433544_SNP [dm6]	C	T	8.720e^-5	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10603244	2R_10603244_SNP [dm3] 2R_14715739_SNP [dm6]	T	G	8.781e^-5	0.226	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6506247	2R_6506247_DEL [dm3] 2R_10618742_DEL [dm6]	AA	A	8.796e^-5	0.226	INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17416130	X_17416130_SNP [dm3] X_17522097_SNP [dm6]	T	C	8.820e^-5	0.226	INTRON CG43658
X	4345518	X_4345518_SNP [dm3] X_4451485_SNP [dm6]	C	A	8.820e^-5	0.226	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4344851	X_4344851_SNP [dm3] X_4450818_SNP [dm6]	G	T	8.832e^-5	0.226	INTRON CR32773 & 1 other
3L	22240587	3L_22240587_SNP [dm3] 3L_22247487_SNP [dm6]	G	A	8.858e^-5	0.226	UTR_3_PRIME olf413
X	4319532	X_4319532_SNP [dm3] X_4425499_SNP [dm6]	C	T	8.867e^-5	0.226	INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3018430	2L_3018430_SNP [dm3] 2L_3018430_SNP [dm6]	A	C	8.908e^-5	0.227	UPSTREAM CG17264 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14713521	2R_14713521_SNP [dm3] 2R_18826016_SNP [dm6]	T	C	8.936e^-5	0.227	SPLICE_SITE_REGION CG15097 UPSTREAM CG15097 INTRON CG15097
2L	7643325	2L_7643325_SNP [dm3] 2L_7643325_SNP [dm6]	T	A	8.946e^-5	0.227	UTR_3_PRIME Slob DOWNSTREAM Slob
3R	2105089	3R_2105089_SNP [dm3] 3R_6279367_SNP [dm6]	A	G	8.960e^-5	0.227	INTRON Osi12	TF binding site BDTNP1_TFBS_sna
X	6097807	X_6097807_SNP [dm3] X_6203774_SNP [dm6]	C	G	8.968e^-5	0.227	INTERGENIC	TF binding site mE1_TFBS_inv
X	7263850	X_7263850_SNP [dm3] X_7369817_SNP [dm6]	G	T	8.983e^-5	0.227	INTRON CG1677 & 1 other
2R	5145979	2R_5145979_SNP [dm3] 2R_9258474_SNP [dm6]	T	C	9.059e^-5	0.228	INTRON Pkn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15311676	2R_15311676_SNP [dm3] 2R_19424171_SNP [dm6]	C	T	9.062e^-5	0.228	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	12813787	X_12813787_SNP [dm3] X_12919754_SNP [dm6]	C	T	9.093e^-5	0.229	INTRON fne
X	16135541	X_16135541_SNP [dm3] X_16241508_SNP [dm6]	C	G	9.105e^-5	0.229	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4430929	X_4430929_SNP [dm3] X_4536896_SNP [dm6]	G	A	9.114e^-5	0.229	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4567233	3R_4567233_SNP [dm3] 3R_8741511_SNP [dm6]	T	A	9.142e^-5	0.229	INTRON CG9801
2L	13550024	2L_13550024_SNP [dm3] 2L_13550024_SNP [dm6]	T	A	9.204e^-5	0.23	UPSTREAM kuz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	4345380	X_4345380_SNP [dm3] X_4451347_SNP [dm6]	G	A	9.251e^-5	0.231	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2172905	3R_2172905_SNP [dm3] 3R_6347183_SNP [dm6]	G	A	9.272e^-5	0.231	NON_SYNONYMOUS_CODING CG18048	TF binding site mE1_TFBS_cad
3R	2188549	3R_2188549_SNP [dm3] 3R_6362827_SNP [dm6]	T	C	9.272e^-5	0.231	INTRON CG42724
3R	4567564	3R_4567564_SNP [dm3] 3R_8741842_SNP [dm6]	T	A	9.277e^-5	0.231	INTRON CG9801
3L	6627348	3L_6627348_SNP [dm3] 3L_6634248_SNP [dm6]	C	G	9.302e^-5	0.231	INTRON GluRIA
2L	14640145	2L_14640145_SNP [dm3] 2L_14640145_SNP [dm6]	G	A	9.342e^-5	0.232	INTRON osp	TF binding site mE1_TFBS_sens
2L	6093515	2L_6093515_SNP [dm3] 2L_6093515_SNP [dm6]	G	T	9.350e^-5	0.232	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18926552	2L_18926552_SNP [dm3] 2L_18926552_SNP [dm6]	C	T	9.386e^-5	0.233	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18203815	3L_18203815_DEL [dm3] 3L_18210715_DEL [dm6]	AGTTGTTTGTT...	A	9.404e^-5	0.233	INTERGENIC
2L	19785608	2L_19785608_SNP [dm3] 2L_19785608_SNP [dm6]	T	G	9.457e^-5	0.234	INTRON CdGAPr
3R	4195223	3R_4195223_SNP [dm3] 3R_8369501_SNP [dm6]	C	A	9.475e^-5	0.234	INTRON CG45263
2R	7092339	2R_7092339_SNP [dm3] 2R_11204834_SNP [dm6]	T	G	9.498e^-5	0.234	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6684464	2L_6684464_SNP [dm3] 2L_6684464_SNP [dm6]	C	T	9.556e^-5	0.235	UPSTREAM Nhe3 DOWNSTREAM CG11327 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	12709396	3R_12709396_SNP [dm3] 3R_16883674_SNP [dm6]	T	A	9.557e^-5	0.235	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	4965273	3R_4965273_SNP [dm3] 3R_9139551_SNP [dm6]	T	G	9.560e^-5	0.235	INTRON pum
2L	19024938	2L_19024938_SNP [dm3] 2L_19024938_SNP [dm6]	G	A	9.659e^-5	0.237	UPSTREAM CR43700 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2519592	2L_2519592_DEL [dm3] 2L_2519592_DEL [dm6]	GC	G	9.746e^-5	0.237	INTERGENIC
2L	20563888	2L_20563888_SNP [dm3] 2L_20563888_SNP [dm6]	G	C	9.759e^-5	0.237	INTRON CR45347
3R	6247377	3R_6247377_SNP [dm3] 3R_10421655_SNP [dm6]	G	A	9.761e^-5	0.237	INTERGENIC
3R	10771720	3R_10771720_SNP [dm3] 3R_14945998_SNP [dm6]	A	C	9.770e^-5	0.237	INTERGENIC
2L	11016621	2L_11016621_SNP [dm3] 2L_11016621_SNP [dm6]	T	A	9.781e^-5	0.237	UPSTREAM CG14913 DOWNSTREAM Acp32CD INTRON Samuel
3R	4876051	3R_4876051_SNP [dm3] 3R_9050329_SNP [dm6]	G	A	9.783e^-5	0.237	UPSTREAM Mst85C INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	9319585	2R_9319585_SNP [dm3] 2R_13432080_SNP [dm6]	G	A	9.801e^-5	0.237	UPSTREAM tRNA:I:49Fe & 2 others DOWNSTREAM tRNA:I:49Fc & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
X	6102753	X_6102753_SNP [dm3] X_6208720_SNP [dm6]	G	A	9.817e^-5	0.237	INTERGENIC
2R	19895373	2R_19895373_SNP [dm3] 2R_24007850_SNP [dm6]	C	T	9.819e^-5	0.237	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
2L	20787222	2L_20787222_SNP [dm3] 2L_20787222_SNP [dm6]	T	G	9.829e^-5	0.237	UPSTREAM Pomp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
2L	20791988	2L_20791988_DEL [dm3] 2L_20791988_DEL [dm6]	GCAAGAAAATCGT...	G	9.829e^-5	0.237	INTRON vari	TF binding site mE1_TFBS_Trl
X	12813768	X_12813768_SNP [dm3] X_12919735_SNP [dm6]	T	A	9.832e^-5	0.237	INTRON fne
2L	13559631	2L_13559631_SNP [dm3] 2L_13559631_SNP [dm6]	T	A	9.841e^-5	0.237	INTRON kuz
2L	13094754	2L_13094754_SNP [dm3] 2L_13094754_SNP [dm6]	G	C	9.851e^-5	0.237	INTERGENIC
2R	12361205	2R_12361205_DEL [dm3] 2R_16473700_DEL [dm6]	TTGAATT	T	9.873e^-5	0.237	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	4345221	X_4345221_SNP [dm3] X_4451188_SNP [dm6]	G	T	9.873e^-5	0.237	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_inv
2L	13582103	2L_13582103_SNP [dm3] 2L_13582103_SNP [dm6]	C	T	9.906e^-5	0.238	UPSTREAM CR44973 INTRON kuz
3R	18265617	3R_18265617_SNP [dm3] 3R_22439895_SNP [dm6]	T	A	9.934e^-5	0.238	DOWNSTREAM CG12499 INTERGENIC
3R	4826694	3R_4826694_SNP [dm3] 3R_9000972_SNP [dm6]	G	C	9.939e^-5	0.238	INTRON CG31100
2R	6462822	2R_6462822_SNP [dm3] 2R_10575317_SNP [dm6]	C	T	9.958e^-5	0.238	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5290309	2L_5290309_SNP [dm3] 2L_5290309_SNP [dm6]	C	G	1.001e^-4	0.238	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6656087	3L_6656087_SNP [dm3] 3L_6662987_SNP [dm6]	C	T	1.002e^-4	0.238	INTERGENIC
3R	8109086	3R_8109086_SNP [dm3] 3R_12283364_SNP [dm6]	G	A	1.002e^-4	0.238	INTRON svp
2L	14255243	2L_14255243_SNP [dm3] 2L_14255243_SNP [dm6]	G	A	1.007e^-4	0.239	INTERGENIC
2L	13437113	2L_13437113_SNP [dm3] 2L_13437113_SNP [dm6]	A	T	1.012e^-4	0.24	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	9698088	2L_9698088_SNP [dm3] 2L_9698088_SNP [dm6]	A	T	1.014e^-4	0.24	UTR_5_PRIME Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	9624008	2L_9624008_SNP [dm3] 2L_9624008_SNP [dm6]	G	A	1.025e^-4	0.243	DOWNSTREAM GlcAT-S & 1 other INTERGENIC
3R	4251442	3R_4251442_INS [dm3] 3R_8425720_INS [dm6]	A	AA	1.028e^-4	0.243	INTRON CG45263
3L	7168604	3L_7168604_SNP [dm3] 3L_7175504_SNP [dm6]	G	A	1.029e^-4	0.243	SYNONYMOUS_CODING Dscam2
3R	25401053	3R_25401053_SNP [dm3] 3R_29575331_SNP [dm6]	G	A	1.031e^-4	0.243	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17641397	3R_17641397_DEL [dm3] 3R_21815675_DEL [dm6]	ATAGTTATGTT...	A	1.033e^-4	0.243	INTRON CASK	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4583655	2R_4583655_SNP [dm3] 2R_8696150_SNP [dm6]	A	T	1.033e^-4	0.243	UTR_5_PRIME CG8586 UPSTREAM CG8738 & 1 other
3R	2222235	3R_2222235_SNP [dm3] 3R_6396513_SNP [dm6]	T	C	1.036e^-4	0.243	INTRON Dmtn
3R	17659726	3R_17659726_SNP [dm3] 3R_21834004_SNP [dm6]	T	A	1.037e^-4	0.243	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi
2L	3059204	2L_3059204_SNP [dm3] 2L_3059204_SNP [dm6]	C	A	1.042e^-4	0.244	INTRON CG3523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9401023	2L_9401023_SNP [dm3] 2L_9401023_SNP [dm6]	G	T	1.046e^-4	0.245	INTRON Shawl
3R	6705386	3R_6705386_SNP [dm3] 3R_10879664_SNP [dm6]	G	A	1.046e^-4	0.245	UTR_3_PRIME Tpc1 UPSTREAM CG14695	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4570763	3R_4570763_SNP [dm3] 3R_8745041_SNP [dm6]	G	A	1.053e^-4	0.246	INTRON CG9801
3L	1833230	3L_1833230_SNP [dm3] 3L_1833230_SNP [dm6]	G	T	1.054e^-4	0.246	INTRON Cpr62Bb
3R	4858700	3R_4858700_SNP [dm3] 3R_9032978_SNP [dm6]	C	T	1.055e^-4	0.246	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4573431	3R_4573431_SNP [dm3] 3R_8747709_SNP [dm6]	G	A	1.058e^-4	0.246	UPSTREAM CG8223 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	10817500	X_10817500_SNP [dm3] X_10923467_SNP [dm6]	G	T	1.061e^-4	0.246	UPSTREAM v DOWNSTREAM CG43901 INTERGENIC
2R	17132532	2R_17132532_SNP [dm3] 2R_21245027_SNP [dm6]	A	T	1.061e^-4	0.246	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2R	4784751	2R_4784751_SNP [dm3] 2R_8897246_SNP [dm6]	G	T	1.063e^-4	0.246	SYNONYMOUS_CODING Sec31 DOWNSTREAM CR45202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10995145	2L_10995145_SNP [dm3] 2L_10995145_SNP [dm6]	A	T	1.064e^-4	0.246	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	15673300	3L_15673300_SNP [dm3] 3L_15680200_SNP [dm6]	T	G	1.074e^-4	0.248	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
X	10819800	X_10819800_SNP [dm3] X_10925767_SNP [dm6]	T	A	1.078e^-4	0.249	DOWNSTREAM v INTERGENIC
X	10804504	X_10804504_SNP [dm3] X_10910471_SNP [dm6]	A	G	1.081e^-4	0.249	INTRON CG43901
X	14735134	X_14735134_SNP [dm3] X_14841101_SNP [dm6]	G	T	1.088e^-4	0.25	INTRON Flo2
3L	17261195	3L_17261195_INS [dm3] 3L_17268095_INS [dm6]	T	TT	1.088e^-4	0.25	INTERGENIC
3R	12709186	3R_12709186_SNP [dm3] 3R_16883464_SNP [dm6]	A	T	1.093e^-4	0.251	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9401285	2L_9401285_SNP [dm3] 2L_9401285_SNP [dm6]	G	A	1.095e^-4	0.251	INTRON Shawl
2R	9282195	2R_9282195_SNP [dm3] 2R_13394690_SNP [dm6]	A	G	1.100e^-4	0.252	UTR_3_PRIME CG4744 DOWNSTREAM AttC
2L	13715331	2L_13715331_SNP [dm3] 2L_13715331_SNP [dm6]	A	G	1.102e^-4	0.252	INTRON CG31814
2L	20790750	2L_20790750_INS [dm3] 2L_20790750_INS [dm6]	T	TTA	1.102e^-4	0.252	INTRON vari
3R	5441324	3R_5441324_SNP [dm3] 3R_9615602_SNP [dm6]	A	C	1.106e^-4	0.253	INTRON CG8312	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8350126	3R_8350126_SNP [dm3] 3R_12524404_SNP [dm6]	C	T	1.109e^-4	0.253	INTRON Octbeta3R
3R	4543914	3R_4543914_SNP [dm3] 3R_8718192_SNP [dm6]	G	C	1.115e^-4	0.253	UTR_3_PRIME CG8116 INTRON Cks85A
3L	157864	3L_157864_SNP [dm3] 3L_157864_SNP [dm6]	G	T	1.116e^-4	0.253	INTRON p130CAS EXON CR43151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	166495	3L_166495_SNP [dm3] 3L_166495_SNP [dm6]	A	G	1.116e^-4	0.253	INTRON p130CAS
3L	176180	3L_176180_SNP [dm3] 3L_176180_SNP [dm6]	G	A	1.116e^-4	0.253	SYNONYMOUS_CODING CG7049 DOWNSTREAM Vdup1	TF binding site BDTNP1_TFBS_dl
3L	181876	3L_181876_SNP [dm3] 3L_181876_SNP [dm6]	G	A	1.116e^-4	0.253	SYNONYMOUS_CODING CG13875 DOWNSTREAM CG34140 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15325779	X_15325779_SNP [dm3] X_15431746_SNP [dm6]	C	A	1.121e^-4	0.253	INTRON Cngl
2L	3377822	2L_3377822_SNP [dm3] 2L_3377822_SNP [dm6]	G	T	1.121e^-4	0.253	INTRON Ptpa	TF binding site mE1_TFBS_sens
X	4402790	X_4402790_INS [dm3] X_4508757_INS [dm6]	T	TGAGATAGAT	1.124e^-4	0.254	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	14706075	X_14706075_SNP [dm3] X_14812042_SNP [dm6]	T	C	1.130e^-4	0.254	INTRON rut
X	14706078	X_14706078_SNP [dm3] X_14812045_SNP [dm6]	A	G	1.130e^-4	0.254	INTRON rut
3R	4567571	3R_4567571_SNP [dm3] 3R_8741849_SNP [dm6]	A	T	1.132e^-4	0.254	INTRON CG9801
3L	19547920	3L_19547920_SNP [dm3] 3L_19554820_SNP [dm6]	T	G	1.134e^-4	0.254	DOWNSTREAM CR44677 & 1 other INTERGENIC
2R	14993748	2R_14993748_SNP [dm3] 2R_19106243_SNP [dm6]	T	C	1.140e^-4	0.254	INTRON 5-HT1A
2R	14993758	2R_14993758_SNP [dm3] 2R_19106253_SNP [dm6]	T	A	1.140e^-4	0.254	INTRON 5-HT1A
2L	10462887	2L_10462887_SNP [dm3] 2L_10462887_SNP [dm6]	G	A	1.141e^-4	0.254	DOWNSTREAM RluA-1 & 1 other INTERGENIC
2L	10462888	2L_10462888_SNP [dm3] 2L_10462888_SNP [dm6]	C	A	1.141e^-4	0.254	DOWNSTREAM RluA-1 & 1 other INTERGENIC
2L	3152693	2L_3152693_SNP [dm3] 2L_3152693_SNP [dm6]	T	C	1.142e^-4	0.254	START_GAINED Mad UTR_5_PRIME Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6112062	3R_6112062_SNP [dm3] 3R_10286340_SNP [dm6]	G	T	1.144e^-4	0.254	INTRON CG43143
2R	17132455	2R_17132455_SNP [dm3] 2R_21244950_SNP [dm6]	C	G	1.146e^-4	0.254	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2R	17767147	2R_17767147_SNP [dm3] 2R_21879642_SNP [dm6]	A	T	1.147e^-4	0.254	INTRON Fili
2L	13761076	2L_13761076_SNP [dm3] 2L_13761076_SNP [dm6]	T	C	1.151e^-4	0.254	INTRON TM9SF4
2L	20802110	2L_20802110_DEL [dm3] 2L_20802110_DEL [dm6]	TATGTTTTGCTCATGT...	T	1.151e^-4	0.254	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18418689	2R_18418689_SNP [dm3] 2R_22531184_SNP [dm6]	T	A	1.153e^-4	0.254	INTRON px
X	19435787	X_19435787_SNP [dm3] X_19541754_SNP [dm6]	C	T	1.155e^-4	0.254	INTRON CG32532
2L	9401551	2L_9401551_SNP [dm3] 2L_9401551_SNP [dm6]	G	T	1.158e^-4	0.254	INTRON Shawl
2L	9402546	2L_9402546_SNP [dm3] 2L_9402546_SNP [dm6]	T	C	1.158e^-4	0.254	INTRON Shawl
2R	17133128	2R_17133128_SNP [dm3] 2R_21245623_SNP [dm6]	C	T	1.160e^-4	0.254	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2L	5476506	2L_5476506_DEL [dm3] 2L_5476506_DEL [dm6]	AT	A	1.164e^-4	0.254	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	13425199	3R_13425199_DEL [dm3] 3R_17599477_DEL [dm6]	CCCAA	AAGC	1.169e^-4	0.254	INTERGENIC
2L	12688485	2L_12688485_SNP [dm3] 2L_12688485_SNP [dm6]	C	A	1.174e^-4	0.254	INTERGENIC
2L	9506593	2L_9506593_SNP [dm3] 2L_9506593_SNP [dm6]	G	T	1.175e^-4	0.254	INTRON CG33298
3R	4248024	3R_4248024_SNP [dm3] 3R_8422302_SNP [dm6]	G	T	1.177e^-4	0.254	INTRON CG45263
3R	5903020	3R_5903020_SNP [dm3] 3R_10077298_SNP [dm6]	C	T	1.177e^-4	0.254	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5907484	3R_5907484_SNP [dm3] 3R_10081762_SNP [dm6]	G	C	1.177e^-4	0.254	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5920291	3R_5920291_SNP [dm3] 3R_10094569_SNP [dm6]	A	G	1.177e^-4	0.254	EXON CR43459
3R	5936113	3R_5936113_SNP [dm3] 3R_10110391_SNP [dm6]	G	C	1.177e^-4	0.254	UPSTREAM Fmr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5967982	3R_5967982_SNP [dm3] 3R_10142260_SNP [dm6]	G	T	1.177e^-4	0.254	NON_SYNONYMOUS_CODING TAF1B UPSTREAM CG42759
3R	5968276	3R_5968276_SNP [dm3] 3R_10142554_SNP [dm6]	C	T	1.177e^-4	0.254	SYNONYMOUS_CODING TAF1B UPSTREAM CG42759
3R	5968500	3R_5968500_SNP [dm3] 3R_10142778_SNP [dm6]	C	T	1.177e^-4	0.254	NON_SYNONYMOUS_CODING TAF1B UPSTREAM CG42759
3R	6249135	3R_6249135_SNP [dm3] 3R_10423413_SNP [dm6]	C	G	1.177e^-4	0.254	INTERGENIC
3R	6292772	3R_6292772_SNP [dm3] 3R_10467050_SNP [dm6]	G	A	1.177e^-4	0.254	INTERGENIC
3R	6303457	3R_6303457_SNP [dm3] 3R_10477735_SNP [dm6]	G	A	1.177e^-4	0.254	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6312428	3R_6312428_SNP [dm3] 3R_10486706_SNP [dm6]	A	T	1.177e^-4	0.254	INTERGENIC
3R	6316709	3R_6316709_SNP [dm3] 3R_10490987_SNP [dm6]	G	A	1.177e^-4	0.254	UPSTREAM CR45576 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6351392	3R_6351392_SNP [dm3] 3R_10525670_SNP [dm6]	T	C	1.177e^-4	0.254	INTRON hth
3R	6504004	3R_6504004_SNP [dm3] 3R_10678282_SNP [dm6]	C	A	1.177e^-4	0.254	INTRON CG14688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	6531789	3R_6531789_SNP [dm3] 3R_10706067_SNP [dm6]	T	A	1.177e^-4	0.254	NON_SYNONYMOUS_CODING CG31467 UPSTREAM CG31391 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4833517	2L_4833517_SNP [dm3] 2L_4833517_SNP [dm6]	G	A	1.179e^-4	0.254	SYNONYMOUS_CODING Ir25a
2L	11929099	2L_11929099_SNP [dm3] 2L_11929099_SNP [dm6]	T	A	1.187e^-4	0.255	UPSTREAM Pde1c INTERGENIC
3L	21435142	3L_21435142_INS [dm3] 3L_21442042_INS [dm6]	A	AT	1.189e^-4	0.255	UPSTREAM CG5664 DOWNSTREAM CG5656 INTERGENIC	transposable element FlyBase
3R	4582064	3R_4582064_DEL [dm3] 3R_8756342_DEL [dm6]	AGTAATACAAGTATCTAAAG...	A	1.190e^-4	0.255	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
3R	5786538	3R_5786538_SNP [dm3] 3R_9960816_SNP [dm6]	G	A	1.193e^-4	0.255	INTRON Glut4EF	TF binding site mE1_TFBS_HSA
3L	521232	3L_521232_SNP [dm3] 3L_521232_SNP [dm6]	C	A	1.198e^-4	0.255	INTRON klar
2R	17398110	2R_17398110_SNP [dm3] 2R_21510605_SNP [dm6]	G	A	1.199e^-4	0.255	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4954881	3R_4954881_SNP [dm3] 3R_9129159_SNP [dm6]	T	G	1.199e^-4	0.255	INTRON pum	TF binding site mE1_TFBS_Trl
3R	5923093	3R_5923093_SNP [dm3] 3R_10097371_SNP [dm6]	G	T	1.204e^-4	0.255	EXON CR43459
3R	5936112	3R_5936112_SNP [dm3] 3R_10110390_SNP [dm6]	T	A	1.204e^-4	0.255	UPSTREAM Fmr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5946480	3R_5946480_SNP [dm3] 3R_10120758_SNP [dm6]	T	A	1.204e^-4	0.255	NON_SYNONYMOUS_CODING gammaSnap2 DOWNSTREAM CG3940
3R	5968471	3R_5968471_SNP [dm3] 3R_10142749_SNP [dm6]	C	T	1.204e^-4	0.255	SYNONYMOUS_CODING TAF1B UPSTREAM CG42759
3R	6004815	3R_6004815_SNP [dm3] 3R_10179093_SNP [dm6]	G	A	1.204e^-4	0.255	INTRON CG12814
3R	6259407	3R_6259407_SNP [dm3] 3R_10433685_SNP [dm6]	A	G	1.204e^-4	0.255	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6260109	3R_6260109_SNP [dm3] 3R_10434387_SNP [dm6]	T	G	1.204e^-4	0.255	UPSTREAM Cyp12e1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3590794	2L_3590794_INS [dm3] 2L_3590794_INS [dm6]	G	GGA	1.206e^-4	0.255	UPSTREAM CR43823 INTERGENIC
X	3518942	X_3518942_SNP [dm3] X_3624909_SNP [dm6]	G	A	1.215e^-4	0.256	INTRON AstA-R1
X	3518947	X_3518947_SNP [dm3] X_3624914_SNP [dm6]	T	C	1.215e^-4	0.256	INTRON AstA-R1
X	3518998	X_3518998_DEL [dm3] X_3624965_DEL [dm6]	TTTT	T	1.215e^-4	0.256	INTRON AstA-R1
X	3519015	X_3519015_SNP [dm3] X_3624982_SNP [dm6]	G	A	1.215e^-4	0.256	INTRON AstA-R1
X	2214728	X_2214728_SNP [dm3] X_2320695_SNP [dm6]	A	T	1.215e^-4	0.256	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6692399	3R_6692399_SNP [dm3] 3R_10866677_SNP [dm6]	G	A	1.215e^-4	0.256	SYNONYMOUS_CODING SelR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13821779	3L_13821779_SNP [dm3] 3L_13828679_SNP [dm6]	A	G	1.217e^-4	0.256	INTERGENIC
2L	13135960	2L_13135960_DEL [dm3] 2L_13135960_DEL [dm6]	TTCCATTTAAG...	T	1.219e^-4	0.256	INTERGENIC
X	21144236	X_21144236_SNP [dm3] X_21273209_SNP [dm6]	G	A	1.222e^-4	0.256	INTRON CG32521
2R	17568891	2R_17568891_SNP [dm3] 2R_21681386_SNP [dm6]	C	T	1.229e^-4	0.257	INTRON CG30263
3R	5759037	3R_5759037_SNP [dm3] 3R_9933315_SNP [dm6]	C	T	1.238e^-4	0.259	INTRON Glut4EF
3R	5769824	3R_5769824_SNP [dm3] 3R_9944102_SNP [dm6]	G	A	1.238e^-4	0.259	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	5466304	2L_5466304_SNP [dm3] 2L_5466304_SNP [dm6]	T	C	1.242e^-4	0.259	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4574469	3R_4574469_DEL [dm3] 3R_8748747_DEL [dm6]	AGA	C	1.244e^-4	0.259	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4785755	3R_4785755_SNP [dm3] 3R_8960033_SNP [dm6]	A	G	1.251e^-4	0.26	INTRON CG11966
2L	19695342	2L_19695342_SNP [dm3] 2L_19695342_SNP [dm6]	C	A	1.252e^-4	0.26	INTRON Lar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10815868	X_10815868_SNP [dm3] X_10921835_SNP [dm6]	T	G	1.256e^-4	0.261	UTR_3_PRIME CG43901 DOWNSTREAM CG43901
X	18790600	X_18790600_SNP [dm3] X_18896567_SNP [dm6]	C	T	1.259e^-4	0.261	UTR_3_PRIME CG7349
2L	9422921	2L_9422921_SNP [dm3] 2L_9422921_SNP [dm6]	A	T	1.262e^-4	0.262	INTRON Mco1	TF binding site BDTNP1_TFBS_dl
2L	11354608	2L_11354608_SNP [dm3] 2L_11354608_SNP [dm6]	A	T	1.264e^-4	0.262	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	2897632	2L_2897632_SNP [dm3] 2L_2897632_SNP [dm6]	G	T	1.274e^-4	0.263	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2897714	2L_2897714_SNP [dm3] 2L_2897714_SNP [dm6]	A	G	1.274e^-4	0.263	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14364974	3L_14364974_SNP [dm3] 3L_14371874_SNP [dm6]	G	A	1.276e^-4	0.263	INTERGENIC
3R	6675438	3R_6675438_DEL [dm3] 3R_10849716_DEL [dm6]	TGCTTAATATCGGCGACGA...	T	1.278e^-4	0.263	UPSTREAM CG42394 DOWNSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	11301461	3R_11301461_SNP [dm3] 3R_15475739_SNP [dm6]	C	A	1.290e^-4	0.265	UTR_5_PRIME AdamTS-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9520234	X_9520234_SNP [dm3] X_9626201_SNP [dm6]	G	A	1.290e^-4	0.265	DOWNSTREAM l_1_G0232 INTERGENIC
3L	22240299	3L_22240299_SNP [dm3] 3L_22247199_SNP [dm6]	G	A	1.293e^-4	0.265	UTR_3_PRIME olf413
2L	2919139	2L_2919139_SNP [dm3] 2L_2919139_SNP [dm6]	A	C	1.293e^-4	0.265	INTRON lilli
2L	20535399	2L_20535399_SNP [dm3] 2L_20535399_SNP [dm6]	C	A	1.300e^-4	0.266	INTERGENIC
3R	5972562	3R_5972562_SNP [dm3] 3R_10146840_SNP [dm6]	A	G	1.302e^-4	0.266	INTRON Invadolysin
2L	13071464	2L_13071464_SNP [dm3] 2L_13071464_SNP [dm6]	G	A	1.303e^-4	0.266	INTERGENIC
3L	10766734	3L_10766734_SNP [dm3] 3L_10773634_SNP [dm6]	A	G	1.304e^-4	0.266	DOWNSTREAM CG43245 INTERGENIC
2L	10641283	2L_10641283_SNP [dm3] 2L_10641283_SNP [dm6]	A	G	1.305e^-4	0.266	SYNONYMOUS_CODING CG31872	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16756139	2L_16756139_SNP [dm3] 2L_16756139_SNP [dm6]	C	T	1.311e^-4	0.267	INTRON yellow-b
2L	16756875	2L_16756875_SNP [dm3] 2L_16756875_SNP [dm6]	C	T	1.311e^-4	0.267	INTRON yellow-b
3R	4238653	3R_4238653_INS [dm3] 3R_8412931_INS [dm6]	C	TGGTCAGATCAA...	1.312e^-4	0.267	INTRON CG45263
3R	4884421	3R_4884421_SNP [dm3] 3R_9058699_SNP [dm6]	C	T	1.313e^-4	0.267	SYNONYMOUS_CODING Kdm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	5404926	3R_5404926_SNP [dm3] 3R_9579204_SNP [dm6]	T	C	1.321e^-4	0.267	NON_SYNONYMOUS_CODING CG8273	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5404928	3R_5404928_SNP [dm3] 3R_9579206_SNP [dm6]	T	C	1.321e^-4	0.267	NON_SYNONYMOUS_CODING CG8273	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4571879	3R_4571879_SNP [dm3] 3R_8746157_SNP [dm6]	G	A	1.322e^-4	0.267	UPSTREAM CG9801 INTRON CG9801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10806784	X_10806784_SNP [dm3] X_10912751_SNP [dm6]	C	A	1.322e^-4	0.267	SYNONYMOUS_CODING CG43901	TF binding site mE1_TFBS_chinmo
3R	4802597	3R_4802597_SNP [dm3] 3R_8976875_SNP [dm6]	G	A	1.329e^-4	0.268	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	1.329e^-4	0.268	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	19048936	2L_19048936_DEL [dm3] 2L_19048936_DEL [dm6]	CTTTTC	C	1.332e^-4	0.268	UPSTREAM CG10470 DOWNSTREAM Acn & 1 other INTERGENIC
3R	13098813	3R_13098813_SNP [dm3] 3R_17273091_SNP [dm6]	G	A	1.334e^-4	0.268	INTERGENIC
X	20409551	X_20409551_SNP [dm3] X_20538524_SNP [dm6]	C	A	1.335e^-4	0.268	UTR_5_PRIME RunxB
2L	2879041	2L_2879041_SNP [dm3] 2L_2879041_SNP [dm6]	A	T	1.338e^-4	0.268	UPSTREAM betaggt-II & 1 other DOWNSTREAM CG31950 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19129403	2L_19129403_SNP [dm3] 2L_19129403_SNP [dm6]	G	A	1.339e^-4	0.268	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	12580261	2R_12580261_SNP [dm3] 2R_16692756_SNP [dm6]	G	A	1.339e^-4	0.268	NON_SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3R	4583508	3R_4583508_SNP [dm3] 3R_8757786_SNP [dm6]	G	T	1.340e^-4	0.268	INTRON CG11768 & 1 other
2R	17943983	2R_17943983_SNP [dm3] 2R_22056478_SNP [dm6]	C	G	1.343e^-4	0.268	NON_SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	20665601	2L_20665601_DEL [dm3] 2L_20665601_DEL [dm6]	ATGTGAAATA	A	1.344e^-4	0.268	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
2R	4788161	2R_4788161_SNP [dm3] 2R_8900656_SNP [dm6]	G	T	1.354e^-4	0.27	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6016388	2L_6016388_SNP [dm3] 2L_6016388_SNP [dm6]	C	T	1.357e^-4	0.27	INTRON H2.0	TF binding site mE1_TFBS_inv
3R	5893276	3R_5893276_SNP [dm3] 3R_10067554_SNP [dm6]	G	A	1.359e^-4	0.27	NON_SYNONYMOUS_CODING CG33783 UPSTREAM CG33784
3R	4210987	3R_4210987_SNP [dm3] 3R_8385265_SNP [dm6]	C	T	1.359e^-4	0.27	NON_SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad
3R	4213799	3R_4213799_SNP [dm3] 3R_8388077_SNP [dm6]	G	A	1.359e^-4	0.27	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17684585	3R_17684585_SNP [dm3] 3R_21858863_SNP [dm6]	G	A	1.360e^-4	0.27	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	7080768	2R_7080768_SNP [dm3] 2R_11193263_SNP [dm6]	G	A	1.362e^-4	0.27	INTRON shn
3R	4253152	3R_4253152_SNP [dm3] 3R_8427430_SNP [dm6]	C	A	1.362e^-4	0.27	INTRON CG45263
2R	900208	2R_900208_DEL [dm3] 2R_5012703_DEL [dm6]	AT	A	1.377e^-4	0.273	INTRON Ir41a	transposable element FlyBase
2L	11195212	2L_11195212_SNP [dm3] 2L_11195212_SNP [dm6]	A	G	1.379e^-4	0.273	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
2L	17339053	2L_17339053_SNP [dm3] 2L_17339053_SNP [dm6]	A	G	1.386e^-4	0.273	INTERGENIC
X	10812651	X_10812651_SNP [dm3] X_10918618_SNP [dm6]	G	C	1.388e^-4	0.273	INTRON CG43901	TF binding site mE1_TFBS_cad
3L	7746126	3L_7746126_SNP [dm3] 3L_7753026_SNP [dm6]	T	A	1.389e^-4	0.273	INTRON CG32373
3R	5759448	3R_5759448_SNP [dm3] 3R_9933726_SNP [dm6]	A	C	1.395e^-4	0.273	INTRON Glut4EF
3R	20910017	3R_20910017_SNP [dm3] 3R_25084295_SNP [dm6]	T	C	1.395e^-4	0.273	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6118174	2L_6118174_SNP [dm3] 2L_6118174_SNP [dm6]	A	T	1.396e^-4	0.273	UPSTREAM CG31642 INTRON stai
3L	5479220	3L_5479220_SNP [dm3] 3L_5486120_SNP [dm6]	G	A	1.397e^-4	0.273	INTERGENIC
2R	9972105	2R_9972105_SNP [dm3] 2R_14084600_SNP [dm6]	T	A	1.399e^-4	0.273	INTRON Prosap	TF binding site mE1_TFBS_bab1
X	4409337	X_4409337_SNP [dm3] X_4515304_SNP [dm6]	T	A	1.400e^-4	0.273	INTRON CR32773
X	13300146	X_13300146_SNP [dm3] X_13406113_SNP [dm6]	A	G	1.407e^-4	0.273	INTRON GstT4
2R	12492337	2R_12492337_SNP [dm3] 2R_16604832_SNP [dm6]	T	A	1.410e^-4	0.273	UPSTREAM CG8303 INTERGENIC
2L	19786575	2L_19786575_SNP [dm3] 2L_19786575_SNP [dm6]	T	C	1.411e^-4	0.273	INTRON CdGAPr
2L	19786590	2L_19786590_SNP [dm3] 2L_19786590_SNP [dm6]	T	A	1.411e^-4	0.273	INTRON CdGAPr
2L	19786612	2L_19786612_SNP [dm3] 2L_19786612_SNP [dm6]	C	A	1.411e^-4	0.273	INTRON CdGAPr
2L	19786650	2L_19786650_SNP [dm3] 2L_19786650_SNP [dm6]	C	T	1.411e^-4	0.273	INTRON CdGAPr
X	21208700	X_21208700_SNP [dm3] X_21337673_SNP [dm6]	G	T	1.411e^-4	0.273	INTRON tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens
3L	10193945	3L_10193945_DEL [dm3] 3L_10200845_DEL [dm6]	TC	T	1.413e^-4	0.273	INTRON ect
3L	3494056	3L_3494056_SNP [dm3] 3L_3494056_SNP [dm6]	G	A	1.414e^-4	0.273	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9802355	2R_9802355_DEL [dm3] 2R_13914850_DEL [dm6]	GAG	G	1.415e^-4	0.273	INTRON shot
3R	6020356	3R_6020356_SNP [dm3] 3R_10194634_SNP [dm6]	A	T	1.415e^-4	0.273	INTRON Syn
3L	11794843	3L_11794843_INS [dm3] 3L_11801743_INS [dm6]	T	TATTATATATATAT...	1.417e^-4	0.273	UPSTREAM CG10361 & 1 other DOWNSTREAM CG42255 INTERGENIC
3R	6310552	3R_6310552_SNP [dm3] 3R_10484830_SNP [dm6]	T	A	1.419e^-4	0.273	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19816062	2L_19816062_SNP [dm3] 2L_19816062_SNP [dm6]	T	C	1.420e^-4	0.273	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4611490	3L_4611490_SNP [dm3] 3L_4611490_SNP [dm6]	G	A	1.420e^-4	0.273	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
2L	16757554	2L_16757554_SNP [dm3] 2L_16757554_SNP [dm6]	C	T	1.422e^-4	0.273	NON_SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
3R	9866988	3R_9866988_SNP [dm3] 3R_14041266_SNP [dm6]	C	T	1.423e^-4	0.273	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2897628	2L_2897628_SNP [dm3] 2L_2897628_SNP [dm6]	A	G	1.423e^-4	0.273	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4765616	3R_4765616_SNP [dm3] 3R_8939894_SNP [dm6]	C	T	1.423e^-4	0.273	INTRON skap
2L	21738297	2L_21738297_SNP [dm3] 2L_21738297_SNP [dm6]	A	G	1.430e^-4	0.274	INTERGENIC	transposable element FlyBase
X	12325730	X_12325730_SNP [dm3] X_12431697_SNP [dm6]	G	A	1.437e^-4	0.275	UPSTREAM Pkcdelta INTERGENIC
2R	10325825	2R_10325825_SNP [dm3] 2R_14438320_SNP [dm6]	G	A	1.446e^-4	0.275	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12900060	2L_12900060_SNP [dm3] 2L_12900060_SNP [dm6]	C	G	1.447e^-4	0.275	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15253891	3L_15253891_SNP [dm3] 3L_15260791_SNP [dm6]	G	T	1.449e^-4	0.275	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15253893	3L_15253893_DEL [dm3] 3L_15260793_DEL [dm6]	CGAATTA	C	1.449e^-4	0.275	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13135836	2L_13135836_SNP [dm3] 2L_13135836_SNP [dm6]	A	G	1.453e^-4	0.275	INTERGENIC
2L	13135976	2L_13135976_SNP [dm3] 2L_13135976_SNP [dm6]	C	T	1.453e^-4	0.275	INTERGENIC
2L	20534784	2L_20534784_INS [dm3] 2L_20534784_INS [dm6]	T	TAAGGCACCAGAAT...	1.453e^-4	0.275	INTERGENIC
2L	20534786	2L_20534786_SNP [dm3] 2L_20534786_SNP [dm6]	T	A	1.453e^-4	0.275	INTERGENIC
3R	6279124	3R_6279124_SNP [dm3] 3R_10453402_SNP [dm6]	G	A	1.454e^-4	0.275	INTERGENIC
3R	4888057	3R_4888057_SNP [dm3] 3R_9062335_SNP [dm6]	G	T	1.455e^-4	0.275	UTR_3_PRIME Kdm2 DOWNSTREAM beag	TF binding site mE1_TFBS_cad
3R	5452256	3R_5452256_SNP [dm3] 3R_9626534_SNP [dm6]	G	A	1.456e^-4	0.275	UPSTREAM CG8319 & 1 other INTRON CG9427	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5453094	3R_5453094_SNP [dm3] 3R_9627372_SNP [dm6]	A	G	1.456e^-4	0.275	UTR_5_PRIME CG8319 UPSTREAM CG9427	TF binding site BDTNP1_TFBS_z mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17878930	3R_17878930_SNP [dm3] 3R_22053208_SNP [dm6]	T	G	1.462e^-4	0.276	INTRON how	TF binding site BDTNP1_TFBS_dl
3R	4824687	3R_4824687_SNP [dm3] 3R_8998965_SNP [dm6]	A	T	1.463e^-4	0.276	DOWNSTREAM CG11977 INTRON CG31100
2R	4695019	2R_4695019_SNP [dm3] 2R_8807514_SNP [dm6]	C	T	1.470e^-4	0.277	INTRON sns	TF binding site mE1_TFBS_bab1
X	14720399	X_14720399_SNP [dm3] X_14826366_SNP [dm6]	A	G	1.470e^-4	0.277	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	14720400	X_14720400_SNP [dm3] X_14826367_SNP [dm6]	T	C	1.470e^-4	0.277	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	13576544	X_13576544_SNP [dm3] X_13682511_SNP [dm6]	T	C	1.471e^-4	0.277	UPSTREAM CG11158 INTERGENIC
3R	9793387	3R_9793387_SNP [dm3] 3R_13967665_SNP [dm6]	A	T	1.477e^-4	0.278	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4874909	3R_4874909_SNP [dm3] 3R_9049187_SNP [dm6]	G	A	1.482e^-4	0.278	START_GAINED Nmdmc UTR_5_PRIME Nmdmc UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10462671	3L_10462671_SNP [dm3] 3L_10469571_SNP [dm6]	C	G	1.485e^-4	0.278	DOWNSTREAM S-Lap3 INTERGENIC
3L	24124943	3L_24124943_SNP [dm3] 3L_24131843_SNP [dm6]	T	A	1.488e^-4	0.279	INTRON Snap25
2R	7271177	2R_7271177_SNP [dm3] 2R_11383672_SNP [dm6]	G	A	1.495e^-4	0.28	INTRON Sod3	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20899616	3L_20899616_SNP [dm3] 3L_20906516_SNP [dm6]	G	A	1.497e^-4	0.28	DOWNSTREAM CG11458 INTERGENIC
2R	13287129	2R_13287129_SNP [dm3] 2R_17399624_SNP [dm6]	T	C	1.501e^-4	0.28	INTRON Sip1
2R	6744568	2R_6744568_SNP [dm3] 2R_10857063_SNP [dm6]	C	T	1.504e^-4	0.28	INTRON CG30015
3R	16289922	3R_16289922_SNP [dm3] 3R_20464200_SNP [dm6]	C	T	1.505e^-4	0.28	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16198708	3L_16198708_SNP [dm3] 3L_16205608_SNP [dm6]	T	C	1.507e^-4	0.28	INTERGENIC
2L	7907847	2L_7907847_SNP [dm3] 2L_7907847_SNP [dm6]	T	A	1.508e^-4	0.28	INTRON Snoo

By genomic position
Variant impact
Gene name

Microbiota_OTU005 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results