DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.880e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09052

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5258 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18142417	2R_18142417_SNP [dm3] 2R_22254912_SNP [dm6]	C	A	1.637e^-13	3.046e^-7	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	8876273	2R_8876273_SNP [dm3] 2R_12988768_SNP [dm6]	C	T	2.370e^-11	1.112e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16402076	2R_16402076_SNP [dm3] 2R_20514571_SNP [dm6]	A	G	2.736e^-11	1.112e^-5	INTERGENIC
X	2657069	X_2657069_SNP [dm3] X_2763036_SNP [dm6]	C	G	3.585e^-11	1.112e^-5	INTRON kirre
X	2657950	X_2657950_SNP [dm3] X_2763917_SNP [dm6]	C	A	3.585e^-11	1.112e^-5	INTRON kirre
X	2657959	X_2657959_SNP [dm3] X_2763926_SNP [dm6]	T	G	3.585e^-11	1.112e^-5	INTRON kirre
X	2656877	X_2656877_SNP [dm3] X_2762844_SNP [dm6]	T	A	5.137e^-11	1.365e^-5	INTRON kirre
2L	925072	2L_925072_SNP [dm3] 2L_925072_SNP [dm6]	T	C	6.105e^-11	1.420e^-5	INTRON CG4341
2L	7562039	2L_7562039_SNP [dm3] 2L_7562039_SNP [dm6]	T	C	4.691e^-10	9.696e^-5	INTRON RapGAP1
2R	18139906	2R_18139906_SNP [dm3] 2R_22252401_SNP [dm6]	C	A	8.992e^-10	1.574e^-4	INTRON dve
2R	8876279	2R_8876279_SNP [dm3] 2R_12988774_SNP [dm6]	A	C	9.307e^-10	1.574e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10154278	2L_10154278_SNP [dm3] 2L_10154278_SNP [dm6]	C	T	1.785e^-9	1.846e^-4	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	13317423	2L_13317423_SNP [dm3] 2L_13317423_SNP [dm6]	G	A	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317426	2L_13317426_SNP [dm3] 2L_13317426_SNP [dm6]	T	C	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317441	2L_13317441_SNP [dm3] 2L_13317441_SNP [dm6]	A	T	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317475	2L_13317475_SNP [dm3] 2L_13317475_SNP [dm6]	C	T	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317477	2L_13317477_SNP [dm3] 2L_13317477_SNP [dm6]	G	T	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317483	2L_13317483_SNP [dm3] 2L_13317483_SNP [dm6]	G	T	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317487	2L_13317487_SNP [dm3] 2L_13317487_SNP [dm6]	G	T	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317508	2L_13317508_SNP [dm3] 2L_13317508_SNP [dm6]	C	G	2.084e^-9	1.846e^-4	INTRON CG43778
2L	13317533	2L_13317533_INS [dm3] 2L_13317533_INS [dm6]	A	ACTACTTAATATCATTAAAT...	2.084e^-9	1.846e^-4	INTRON CG43778
2R	8876288	2R_8876288_SNP [dm3] 2R_12988783_SNP [dm6]	C	T	2.479e^-9	2.096e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	850689	3L_850689_SNP [dm3] 3L_850689_SNP [dm6]	G	A	2.624e^-9	2.122e^-4	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13317452	2L_13317452_SNP [dm3] 2L_13317452_SNP [dm6]	A	T	2.920e^-9	2.264e^-4	INTRON CG43778
2R	8876287	2R_8876287_SNP [dm3] 2R_12988782_SNP [dm6]	T	A	3.671e^-9	2.732e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14064858	2L_14064858_SNP [dm3] 2L_14064858_SNP [dm6]	T	G	3.825e^-9	2.737e^-4	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16841225	2L_16841225_SNP [dm3] 2L_16841225_SNP [dm6]	G	T	4.388e^-9	2.815e^-4	INTRON SclA & 1 other
2L	16841227	2L_16841227_SNP [dm3] 2L_16841227_SNP [dm6]	T	C	4.388e^-9	2.815e^-4	INTRON SclA & 1 other
2L	16856116	2L_16856116_SNP [dm3] 2L_16856116_SNP [dm6]	C	T	4.388e^-9	2.815e^-4	INTRON CG31809	transposable element FlyBase
2L	11288289	2L_11288289_SNP [dm3] 2L_11288289_SNP [dm6]	A	C	5.158e^-9	3.199e^-4	INTERGENIC
2L	4338271	2L_4338271_SNP [dm3] 2L_4338271_SNP [dm6]	A	G	6.297e^-9	3.779e^-4	UPSTREAM Atet INTRON Atet	TF binding site mE1_TFBS_HSA
X	2640925	X_2640925_INS [dm3] X_2746892_INS [dm6]	C	CC	9.918e^-9	5.766e^-4	INTRON kirre
3L	13573518	3L_13573518_SNP [dm3] 3L_13580418_SNP [dm6]	A	T	1.079e^-8	6.081e^-4	INTRON bru-3
2R	15209159	2R_15209159_SNP [dm3] 2R_19321654_SNP [dm6]	C	T	1.232e^-8	6.591e^-4	INTRON Rgk1	TF binding site mE1_TFBS_inv
2R	13021008	2R_13021008_SNP [dm3] 2R_17133503_SNP [dm6]	T	A	1.269e^-8	6.591e^-4	UTR_5_PRIME Acp54A1 UPSTREAM CG11400
2R	17923264	2R_17923264_INS [dm3] 2R_22035759_INS [dm6]	G	GG	1.275e^-8	6.591e^-4	DOWNSTREAM CG9308 INTRON CG34370
2R	15209212	2R_15209212_SNP [dm3] 2R_19321707_SNP [dm6]	C	G	1.403e^-8	7.055e^-4	INTRON Rgk1	TF binding site mE1_TFBS_inv
X	2659263	X_2659263_SNP [dm3] X_2765230_SNP [dm6]	C	T	1.443e^-8	7.067e^-4	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15208776	2R_15208776_SNP [dm3] 2R_19321271_SNP [dm6]	C	G	1.774e^-8	8.462e^-4	INTRON Rgk1
2R	8876322	2R_8876322_INS [dm3] 2R_12988817_INS [dm6]	T	AA	1.866e^-8	8.583e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15208076	2R_15208076_SNP [dm3] 2R_19320571_SNP [dm6]	A	C	1.918e^-8	8.583e^-4	INTRON Rgk1
2L	10975780	2L_10975780_SNP [dm3] 2L_10975780_SNP [dm6]	G	A	1.938e^-8	8.583e^-4	UTR_3_PRIME l_2_06225 UPSTREAM abo & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2066426	2L_2066426_SNP [dm3] 2L_2066426_SNP [dm6]	G	A	2.110e^-8	9.128e^-4	INTRON dpr3
2L	7214414	2L_7214414_INS [dm3] 2L_7214414_INS [dm6]	A	AAAAAA	2.391e^-8	0.001	INTRON CG13784
X	7148366	X_7148366_SNP [dm3] X_7254333_SNP [dm6]	A	G	2.661e^-8	0.001	INTRON CR44357
X	2660179	X_2660179_INS [dm3] X_2766146_INS [dm6]	G	AA	2.725e^-8	0.001	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11288236	2L_11288236_DEL [dm3] 2L_11288236_DEL [dm6]	GG	A	3.010e^-8	0.001	INTERGENIC
2L	11288293	2L_11288293_SNP [dm3] 2L_11288293_SNP [dm6]	A	G	3.010e^-8	0.001	INTERGENIC
2L	11288294	2L_11288294_SNP [dm3] 2L_11288294_SNP [dm6]	T	G	3.010e^-8	0.001	INTERGENIC
X	12662305	X_12662305_SNP [dm3] X_12768272_SNP [dm6]	C	T	3.052e^-8	0.001	INTRON CG3812
2R	7959641	2R_7959641_SNP [dm3] 2R_12072136_SNP [dm6]	T	A	3.076e^-8	0.001	INTRON CG8888
2R	15209207	2R_15209207_SNP [dm3] 2R_19321702_SNP [dm6]	C	T	3.170e^-8	0.001	INTRON Rgk1	TF binding site mE1_TFBS_inv
3L	2746087	3L_2746087_SNP [dm3] 3L_2746087_SNP [dm6]	T	A	3.221e^-8	0.001	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7147751	X_7147751_SNP [dm3] X_7253718_SNP [dm6]	C	T	3.356e^-8	0.001	INTRON CR44357
2R	4866582	2R_4866582_SNP [dm3] 2R_8979077_SNP [dm6]	A	G	3.400e^-8	0.001	INTRON CG8213	TF binding site BDTNP1_TFBS_dl
2L	7214905	2L_7214905_SNP [dm3] 2L_7214905_SNP [dm6]	A	T	3.505e^-8	0.001	INTRON CG13784
3L	2570029	3L_2570029_SNP [dm3] 3L_2570029_SNP [dm6]	A	C	3.630e^-8	0.001	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11288275	2L_11288275_SNP [dm3] 2L_11288275_SNP [dm6]	T	C	4.029e^-8	0.001	INTERGENIC
2R	8876156	2R_8876156_SNP [dm3] 2R_12988651_SNP [dm6]	G	A	4.329e^-8	0.001	INTERGENIC
2R	8876161	2R_8876161_SNP [dm3] 2R_12988656_SNP [dm6]	A	C	4.329e^-8	0.001	INTERGENIC
2R	15208078	2R_15208078_SNP [dm3] 2R_19320573_SNP [dm6]	G	T	4.665e^-8	0.001	INTRON Rgk1
2L	5105137	2L_5105137_SNP [dm3] 2L_5105137_SNP [dm6]	T	A	4.673e^-8	0.001	INTRON Msp300
2L	11288345	2L_11288345_SNP [dm3] 2L_11288345_SNP [dm6]	T	A	5.190e^-8	0.002	INTERGENIC
2R	15207208	2R_15207208_SNP [dm3] 2R_19319703_SNP [dm6]	G	A	5.676e^-8	0.002	INTRON Rgk1
2R	4225121	2R_4225121_SNP [dm3] 2R_8337616_SNP [dm6]	C	T	5.974e^-8	0.002	INTRON pdm3
2R	4225144	2R_4225144_SNP [dm3] 2R_8337639_SNP [dm6]	G	T	5.974e^-8	0.002	INTRON pdm3
2R	4225146	2R_4225146_SNP [dm3] 2R_8337641_SNP [dm6]	C	T	5.974e^-8	0.002	INTRON pdm3
3L	5416444	3L_5416444_DEL [dm3] 3L_5423344_DEL [dm6]	CAAG	T	6.406e^-8	0.002	UPSTREAM CG34391 INTERGENIC
2R	15209334	2R_15209334_SNP [dm3] 2R_19321829_SNP [dm6]	C	T	6.779e^-8	0.002	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14874470	X_14874470_SNP [dm3] X_14980437_SNP [dm6]	T	A	7.197e^-8	0.002	INTRON eag
X	14874471	X_14874471_SNP [dm3] X_14980438_SNP [dm6]	C	G	7.197e^-8	0.002	INTRON eag
X	14874519	X_14874519_SNP [dm3] X_14980486_SNP [dm6]	T	C	7.197e^-8	0.002	INTRON eag
2R	13617146	2R_13617146_SNP [dm3] 2R_17729641_SNP [dm6]	C	T	8.965e^-8	0.002	INTRON CG4984 & 1 other
X	14870611	X_14870611_SNP [dm3] X_14976578_SNP [dm6]	C	T	9.218e^-8	0.002	INTRON eag
X	14870633	X_14870633_SNP [dm3] X_14976600_SNP [dm6]	A	T	9.421e^-8	0.002	INTRON eag
X	14874351	X_14874351_SNP [dm3] X_14980318_SNP [dm6]	G	A	9.421e^-8	0.002	INTRON eag
2R	10547226	2R_10547226_SNP [dm3] 2R_14659721_SNP [dm6]	A	T	9.729e^-8	0.002	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	9.774e^-8	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5352793	2L_5352793_INS [dm3] 2L_5352793_INS [dm6]	T	TGGCT	1.082e^-7	0.002	INTRON nompC
2R	15208978	2R_15208978_SNP [dm3] 2R_19321473_SNP [dm6]	C	A	1.082e^-7	0.002	INTRON Rgk1	TF binding site mE1_TFBS_inv
2L	4600797	2L_4600797_SNP [dm3] 2L_4600797_SNP [dm6]	T	G	1.120e^-7	0.002	INTRON dp
3L	4688096	3L_4688096_SNP [dm3] 3L_4688096_SNP [dm6]	C	T	1.120e^-7	0.002	SYNONYMOUS_CODING CG7514 UPSTREAM axo DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4688416	3L_4688416_SNP [dm3] 3L_4688416_SNP [dm6]	C	T	1.120e^-7	0.002	NON_SYNONYMOUS_CODING CG7514 DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad
3L	4696720	3L_4696720_SNP [dm3] 3L_4696720_SNP [dm6]	T	A	1.120e^-7	0.002	UPSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	4697267	3L_4697267_SNP [dm3] 3L_4697267_SNP [dm6]	A	G	1.120e^-7	0.002	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14451431	2R_14451431_DEL [dm3] 2R_18563926_DEL [dm6]	GGCCCCACTCGAC...	G	1.124e^-7	0.002	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7423130	2L_7423130_SNP [dm3] 2L_7423130_SNP [dm6]	A	T	1.213e^-7	0.003	UPSTREAM CR43857 DOWNSTREAM chm INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11579835	2R_11579835_DEL [dm3] 2R_15692330_DEL [dm6]	ATTTCTTGGA	A	1.268e^-7	0.003	UPSTREAM CG30087 DOWNSTREAM CG30088 EXON CR44372
3R	3621377	3R_3621377_SNP [dm3] 3R_7795655_SNP [dm6]	T	A	1.388e^-7	0.003	SYNONYMOUS_CODING CG2641
2R	13385144	2R_13385144_SNP [dm3] 2R_17497639_SNP [dm6]	T	C	1.422e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20586267	2R_20586267_SNP [dm3] 2R_24698744_SNP [dm6]	A	T	1.428e^-7	0.003	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
2R	11484336	2R_11484336_SNP [dm3] 2R_15596831_SNP [dm6]	A	T	1.455e^-7	0.003	INTERGENIC
X	5552898	X_5552898_SNP [dm3] X_5658865_SNP [dm6]	C	T	1.495e^-7	0.003	INTRON CG42265	TF binding site mE1_TFBS_chinmo
X	14873087	X_14873087_SNP [dm3] X_14979054_SNP [dm6]	A	G	1.557e^-7	0.003	INTRON eag
X	14870590	X_14870590_SNP [dm3] X_14976557_SNP [dm6]	C	T	1.650e^-7	0.003	INTRON eag
2R	17387122	2R_17387122_SNP [dm3] 2R_21499617_SNP [dm6]	G	A	1.656e^-7	0.003	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
2L	5352778	2L_5352778_INS [dm3] 2L_5352778_INS [dm6]	T	ACTTTAAAAAAA...	1.753e^-7	0.003	INTRON nompC
2R	20586215	2R_20586215_SNP [dm3] 2R_24698692_SNP [dm6]	C	T	1.820e^-7	0.003	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
2L	1276250	2L_1276250_SNP [dm3] 2L_1276250_SNP [dm6]	A	G	1.829e^-7	0.003	INTRON robo3
X	18191570	X_18191570_SNP [dm3] X_18297537_SNP [dm6]	T	C	1.893e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4246508	X_4246508_SNP [dm3] X_4352475_SNP [dm6]	G	T	1.901e^-7	0.003	INTRON norpA
X	4247017	X_4247017_SNP [dm3] X_4352984_SNP [dm6]	G	A	1.901e^-7	0.003	INTRON norpA
2L	3779731	2L_3779731_SNP [dm3] 2L_3779731_SNP [dm6]	C	A	1.987e^-7	0.004	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13724689	2R_13724689_INS [dm3] 2R_17837184_INS [dm6]	T	TGT	2.164e^-7	0.004	INTRON grh
2L	3779612	2L_3779612_SNP [dm3] 2L_3779612_SNP [dm6]	G	A	2.213e^-7	0.004	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3779679	2L_3779679_SNP [dm3] 2L_3779679_SNP [dm6]	C	T	2.213e^-7	0.004	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23360790	3R_23360790_SNP [dm3] 3R_27535068_SNP [dm6]	G	A	2.241e^-7	0.004	DOWNSTREAM CR44289 INTERGENIC
2L	5927882	2L_5927882_SNP [dm3] 2L_5927882_SNP [dm6]	G	A	2.412e^-7	0.004	INTRON dsf
2L	9075450	2L_9075450_SNP [dm3] 2L_9075450_SNP [dm6]	C	G	2.770e^-7	0.005	INTERGENIC
2R	18142569	2R_18142569_SNP [dm3] 2R_22255064_SNP [dm6]	T	C	2.824e^-7	0.005	INTRON dve
2L	5670637	2L_5670637_SNP [dm3] 2L_5670637_SNP [dm6]	A	G	2.846e^-7	0.005	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_chinmo
X	14877001	X_14877001_SNP [dm3] X_14982968_SNP [dm6]	T	A	2.948e^-7	0.005	INTRON eag
2R	7674482	2R_7674482_SNP [dm3] 2R_11786977_SNP [dm6]	A	T	3.018e^-7	0.005	DOWNSTREAM Ir48c INTRON ths
3L	8570298	3L_8570298_SNP [dm3] 3L_8577198_SNP [dm6]	A	G	3.072e^-7	0.005	UTR_5_PRIME CG43078
2R	17319746	2R_17319746_SNP [dm3] 2R_21432241_SNP [dm6]	G	C	3.121e^-7	0.005	INTRON Sdc
2R	5981821	2R_5981821_SNP [dm3] 2R_10094316_SNP [dm6]	T	A	3.135e^-7	0.005	NON_SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7424567	3L_7424567_SNP [dm3] 3L_7431467_SNP [dm6]	G	C	3.246e^-7	0.005	INTRON CG42458
2R	8876220	2R_8876220_SNP [dm3] 2R_12988715_SNP [dm6]	A	G	3.287e^-7	0.005	INTERGENIC
2R	15207756	2R_15207756_SNP [dm3] 2R_19320251_SNP [dm6]	T	G	3.305e^-7	0.005	INTRON Rgk1
2L	4337976	2L_4337976_SNP [dm3] 2L_4337976_SNP [dm6]	G	T	3.396e^-7	0.005	UPSTREAM Atet INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10752901	2L_10752901_SNP [dm3] 2L_10752901_SNP [dm6]	G	T	3.404e^-7	0.005	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	10752907	2L_10752907_SNP [dm3] 2L_10752907_SNP [dm6]	A	T	3.404e^-7	0.005	INTRON CG17124	TF binding site mE1_TFBS_cad
X	2648260	X_2648260_SNP [dm3] X_2754227_SNP [dm6]	G	C	3.526e^-7	0.005	INTRON kirre
2R	8876255	2R_8876255_SNP [dm3] 2R_12988750_SNP [dm6]	A	G	3.554e^-7	0.005	INTERGENIC
2L	16852664	2L_16852664_DEL [dm3] 2L_16852664_DEL [dm6]	TAAGTACAT	T	3.814e^-7	0.006	UPSTREAM CG31810 DOWNSTREAM CG31809 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10752910	2L_10752910_SNP [dm3] 2L_10752910_SNP [dm6]	T	C	3.826e^-7	0.006	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	15209122	2R_15209122_SNP [dm3] 2R_19321617_SNP [dm6]	T	C	3.897e^-7	0.006	INTRON Rgk1	TF binding site mE1_TFBS_inv
3R	11094926	3R_11094926_SNP [dm3] 3R_15269204_SNP [dm6]	C	A	4.048e^-7	0.006	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	11095846	3R_11095846_SNP [dm3] 3R_15270124_SNP [dm6]	C	G	4.048e^-7	0.006	DOWNSTREAM Cp190 INTRON Zip88E	TF binding site mE1_TFBS_HSA
2R	14545461	2R_14545461_SNP [dm3] 2R_18657956_SNP [dm6]	C	G	4.173e^-7	0.006	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2L	9015052	2L_9015052_SNP [dm3] 2L_9015052_SNP [dm6]	T	C	4.188e^-7	0.006	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12133536	2L_12133536_SNP [dm3] 2L_12133536_SNP [dm6]	G	A	4.940e^-7	0.007	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10091096	2L_10091096_SNP [dm3] 2L_10091096_SNP [dm6]	T	G	5.044e^-7	0.007	DOWNSTREAM CG13133 INTRON CG44153
2R	15209259	2R_15209259_SNP [dm3] 2R_19321754_SNP [dm6]	G	T	5.607e^-7	0.008	INTRON Rgk1	TF binding site mE1_TFBS_inv
2R	18115681	2R_18115681_SNP [dm3] 2R_22228176_SNP [dm6]	A	C	5.781e^-7	0.008	START_GAINED Oatp58Dc UTR_5_PRIME Oatp58Dc UPSTREAM Oatp58Dc INTRON Oatp58Dc
2L	9082189	2L_9082189_SNP [dm3] 2L_9082189_SNP [dm6]	A	G	5.868e^-7	0.008	INTERGENIC
2L	5927802	2L_5927802_SNP [dm3] 2L_5927802_SNP [dm6]	A	C	5.893e^-7	0.008	INTRON dsf
2R	15209111	2R_15209111_SNP [dm3] 2R_19321606_SNP [dm6]	T	C	6.090e^-7	0.008	INTRON Rgk1	TF binding site mE1_TFBS_inv
2R	16483344	2R_16483344_INS [dm3] 2R_20595839_INS [dm6]	G	GC	6.236e^-7	0.008	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1258257	2L_1258257_SNP [dm3] 2L_1258257_SNP [dm6]	C	T	6.301e^-7	0.008	INTRON robo3
2R	15207768	2R_15207768_SNP [dm3] 2R_19320263_SNP [dm6]	A	G	6.309e^-7	0.008	INTRON Rgk1
3L	19466351	3L_19466351_SNP [dm3] 3L_19473251_SNP [dm6]	G	A	6.460e^-7	0.008	DOWNSTREAM CG12519 INTERGENIC
2L	2269391	2L_2269391_SNP [dm3] 2L_2269391_SNP [dm6]	G	T	6.469e^-7	0.008	UPSTREAM CG17242 INTERGENIC
2L	13915551	2L_13915551_SNP [dm3] 2L_13915551_SNP [dm6]	C	T	6.530e^-7	0.008	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
2L	16856081	2L_16856081_DEL [dm3] 2L_16856081_DEL [dm6]	GTATCAATTTGGATTA...	C	6.751e^-7	0.009	INTRON CG31809	transposable element FlyBase
2R	7959649	2R_7959649_SNP [dm3] 2R_12072144_SNP [dm6]	A	T	6.995e^-7	0.009	INTRON CG8888
X	2658841	X_2658841_SNP [dm3] X_2764808_SNP [dm6]	A	T	7.045e^-7	0.009	INTRON kirre	TF binding site mE1_TFBS_hkb
2R	13742762	2R_13742762_SNP [dm3] 2R_17855257_SNP [dm6]	C	A	7.126e^-7	0.009	UTR_5_PRIME olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	8876223	2R_8876223_DEL [dm3] 2R_12988718_DEL [dm6]	TT	T	7.504e^-7	0.009	INTERGENIC
2L	2269322	2L_2269322_SNP [dm3] 2L_2269322_SNP [dm6]	T	G	7.619e^-7	0.009	UPSTREAM CG17242 INTERGENIC
2L	2269370	2L_2269370_SNP [dm3] 2L_2269370_SNP [dm6]	T	C	7.619e^-7	0.009	UPSTREAM CG17242 INTERGENIC
2L	5927792	2L_5927792_SNP [dm3] 2L_5927792_SNP [dm6]	A	C	7.668e^-7	0.009	INTRON dsf
X	20530174	X_20530174_SNP [dm3] X_20659147_SNP [dm6]	G	T	7.709e^-7	0.009	INTRON Cyp6v1
2L	4187058	2L_4187058_SNP [dm3] 2L_4187058_SNP [dm6]	C	T	7.987e^-7	0.01	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
X	5257980	X_5257980_SNP [dm3] X_5363947_SNP [dm6]	A	T	8.053e^-7	0.01	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13448252	X_13448252_SNP [dm3] X_13554219_SNP [dm6]	C	T	8.078e^-7	0.01	NON_SYNONYMOUS_CODING CG11816
2L	10091099	2L_10091099_SNP [dm3] 2L_10091099_SNP [dm6]	C	A	8.108e^-7	0.01	DOWNSTREAM CG13133 INTRON CG44153
2L	16847133	2L_16847133_SNP [dm3] 2L_16847133_SNP [dm6]	G	C	8.423e^-7	0.01	UTR_5_PRIME CG13284 INTRON CG13284	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16844630	2L_16844630_INS [dm3] 2L_16844630_INS [dm6]	A	AC	8.496e^-7	0.01	INTRON CG13284
2R	1752848	2R_1752848_SNP [dm3] 2R_5865343_SNP [dm6]	C	T	8.808e^-7	0.01	INTERGENIC
3L	8430562	3L_8430562_SNP [dm3] 3L_8437462_SNP [dm6]	A	T	8.873e^-7	0.01	INTRON Unr
3L	8430713	3L_8430713_SNP [dm3] 3L_8437613_SNP [dm6]	G	C	8.873e^-7	0.01	SYNONYMOUS_CODING Unr
2L	7491272	2L_7491272_SNP [dm3] 2L_7491272_SNP [dm6]	T	C	8.999e^-7	0.01	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1649715	2L_1649715_SNP [dm3] 2L_1649715_SNP [dm6]	C	A	9.245e^-7	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21261908	X_21261908_SNP [dm3] X_21390881_SNP [dm6]	T	A	9.277e^-7	0.01	UTR_3_PRIME mst
X	21984846	X_21984846_SNP [dm3] X_22583010_SNP [dm6]	G	T	9.277e^-7	0.01	DOWNSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13217816	2R_13217816_SNP [dm3] 2R_17330311_SNP [dm6]	G	A	9.279e^-7	0.01	INTRON mbl
2L	1247010	2L_1247010_SNP [dm3] 2L_1247010_SNP [dm6]	A	G	9.546e^-7	0.011	INTERGENIC
2R	17679544	2R_17679544_SNP [dm3] 2R_21792039_SNP [dm6]	G	T	9.554e^-7	0.011	UPSTREAM lox2 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	2300396	2L_2300396_SNP [dm3] 2L_2300396_SNP [dm6]	G	A	9.669e^-7	0.011	SYNONYMOUS_CODING CG31949
2R	7959675	2R_7959675_SNP [dm3] 2R_12072170_SNP [dm6]	C	T	9.781e^-7	0.011	INTRON CG8888
2L	8535490	2L_8535490_SNP [dm3] 2L_8535490_SNP [dm6]	A	T	9.930e^-7	0.011	UPSTREAM CG17834 INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8876136	2R_8876136_SNP [dm3] 2R_12988631_SNP [dm6]	A	G	1.007e^-6	0.011	INTERGENIC
2L	5927717	2L_5927717_SNP [dm3] 2L_5927717_SNP [dm6]	G	A	1.024e^-6	0.011	INTRON dsf
2R	7959683	2R_7959683_SNP [dm3] 2R_12072178_SNP [dm6]	A	G	1.037e^-6	0.011	INTRON CG8888
2R	12059825	2R_12059825_SNP [dm3] 2R_16172320_SNP [dm6]	T	A	1.082e^-6	0.011	SPLICE_SITE_REGION Ptp52F INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	3465546	2R_3465546_SNP [dm3] 2R_7578041_SNP [dm6]	C	T	1.154e^-6	0.012	SYNONYMOUS_CODING Vps13 DOWNSTREAM CR45130
2R	7959670	2R_7959670_SNP [dm3] 2R_12072165_SNP [dm6]	A	T	1.163e^-6	0.012	INTRON CG8888
2L	2289850	2L_2289850_SNP [dm3] 2L_2289850_SNP [dm6]	C	T	1.178e^-6	0.012	UPSTREAM CG17237 DOWNSTREAM robl22E INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7214405	2L_7214405_DEL [dm3] 2L_7214405_DEL [dm6]	ACGCA	A	1.201e^-6	0.012	INTRON CG13784
2R	17849482	2R_17849482_SNP [dm3] 2R_21961977_SNP [dm6]	G	T	1.340e^-6	0.014	INTERGENIC
X	16085871	X_16085871_SNP [dm3] X_16191838_SNP [dm6]	A	G	1.344e^-6	0.014	UPSTREAM mir-985 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1276192	2L_1276192_SNP [dm3] 2L_1276192_SNP [dm6]	A	G	1.360e^-6	0.014	INTRON robo3
2L	1276275	2L_1276275_SNP [dm3] 2L_1276275_SNP [dm6]	C	T	1.360e^-6	0.014	INTRON robo3
3L	5216493	3L_5216493_SNP [dm3] 3L_5223393_SNP [dm6]	C	T	1.360e^-6	0.014	INTRON shep
3R	13875791	3R_13875791_SNP [dm3] 3R_18050069_SNP [dm6]	G	A	1.425e^-6	0.014	UPSTREAM htl INTRON htl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15208385	2R_15208385_SNP [dm3] 2R_19320880_SNP [dm6]	G	T	1.433e^-6	0.014	INTRON Rgk1
2L	7214504	2L_7214504_SNP [dm3] 2L_7214504_SNP [dm6]	T	C	1.437e^-6	0.014	INTRON CG13784
2R	18135523	2R_18135523_SNP [dm3] 2R_22248018_SNP [dm6]	G	T	1.447e^-6	0.014	INTRON dve	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11484629	2R_11484629_SNP [dm3] 2R_15597124_SNP [dm6]	T	C	1.454e^-6	0.014	INTERGENIC
2R	8868653	2R_8868653_SNP [dm3] 2R_12981148_SNP [dm6]	G	T	1.460e^-6	0.014	UPSTREAM Psc INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8871550	2R_8871550_SNP [dm3] 2R_12984045_SNP [dm6]	A	T	1.460e^-6	0.014	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8872260	2R_8872260_SNP [dm3] 2R_12984755_SNP [dm6]	A	T	1.460e^-6	0.014	UPSTREAM CR44339 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8872431	2R_8872431_SNP [dm3] 2R_12984926_SNP [dm6]	C	T	1.460e^-6	0.014	UPSTREAM CR44339 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	8875931	2R_8875931_SNP [dm3] 2R_12988426_SNP [dm6]	A	T	1.460e^-6	0.014	INTERGENIC
X	18137210	X_18137210_INS [dm3] X_18243177_INS [dm6]	T	TGTTT	1.492e^-6	0.014	INTRON upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	10836613	X_10836613_SNP [dm3] X_10942580_SNP [dm6]	G	C	1.496e^-6	0.014	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	1238541	2L_1238541_SNP [dm3] 2L_1238541_SNP [dm6]	C	A	1.506e^-6	0.014	INTERGENIC
2L	2015235	2L_2015235_DEL [dm3] 2L_2015235_DEL [dm6]	TCT	T	1.508e^-6	0.014	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
X	7867508	X_7867508_DEL [dm3] X_7973475_DEL [dm6]	TTTT	T	1.508e^-6	0.014	INTRON sn
2L	7214580	2L_7214580_SNP [dm3] 2L_7214580_SNP [dm6]	A	T	1.530e^-6	0.014	INTRON CG13784
3L	5847591	3L_5847591_SNP [dm3] 3L_5854491_SNP [dm6]	C	T	1.546e^-6	0.014	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19426688	3R_19426688_SNP [dm3] 3R_23600966_SNP [dm6]	T	G	1.566e^-6	0.014	DOWNSTREAM tRNA:CR31143 INTERGENIC
3L	7424391	3L_7424391_SNP [dm3] 3L_7431291_SNP [dm6]	A	C	1.579e^-6	0.014	INTRON CG42458
3L	7424398	3L_7424398_SNP [dm3] 3L_7431298_SNP [dm6]	A	G	1.579e^-6	0.014	INTRON CG42458
3L	16230461	3L_16230461_SNP [dm3] 3L_16237361_SNP [dm6]	T	A	1.588e^-6	0.014	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
2R	16483335	2R_16483335_SNP [dm3] 2R_20595830_SNP [dm6]	T	C	1.596e^-6	0.014	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	2269320	2L_2269320_SNP [dm3] 2L_2269320_SNP [dm6]	A	T	1.596e^-6	0.014	UPSTREAM CG17242 INTERGENIC
2R	9473373	2R_9473373_SNP [dm3] 2R_13585868_SNP [dm6]	C	A	1.597e^-6	0.014	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_ttk mE1_TFBS_zfh1
2L	1401103	2L_1401103_SNP [dm3] 2L_1401103_SNP [dm6]	C	T	1.598e^-6	0.014	INTRON lea
2R	14648550	2R_14648550_SNP [dm3] 2R_18761045_SNP [dm6]	C	T	1.621e^-6	0.014	UTR_5_PRIME Jabba UPSTREAM Jabba & 1 other
2L	1753371	2L_1753371_SNP [dm3] 2L_1753371_SNP [dm6]	G	T	1.671e^-6	0.015	DOWNSTREAM CG17648 INTERGENIC
2L	16857993	2L_16857993_SNP [dm3] 2L_16857993_SNP [dm6]	T	C	1.708e^-6	0.015	INTRON CG31809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3705527	2L_3705527_INS [dm3] 2L_3705527_INS [dm6]	A	AC	1.743e^-6	0.015	UPSTREAM CG31778 INTERGENIC
3L	2827355	3L_2827355_SNP [dm3] 3L_2827355_SNP [dm6]	A	G	1.758e^-6	0.015	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7959660	2R_7959660_SNP [dm3] 2R_12072155_SNP [dm6]	T	A	1.769e^-6	0.015	INTRON CG8888
2R	8873512	2R_8873512_SNP [dm3] 2R_12986007_SNP [dm6]	T	A	1.780e^-6	0.015	DOWNSTREAM CR44339 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8869283	2R_8869283_SNP [dm3] 2R_12981778_SNP [dm6]	G	A	1.820e^-6	0.016	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	17405783	2L_17405783_SNP [dm3] 2L_17405783_SNP [dm6]	G	A	1.827e^-6	0.016	SYNONYMOUS_CODING CLIP-190
X	2639431	X_2639431_SNP [dm3] X_2745398_SNP [dm6]	C	T	1.935e^-6	0.016	INTRON kirre	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	16483343	2R_16483343_SNP [dm3] 2R_20595838_SNP [dm6]	T	G	1.951e^-6	0.016	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	18811297	3R_18811297_SNP [dm3] 3R_22985575_SNP [dm6]	T	C	2.006e^-6	0.017	INTRON Nha2
3L	3514243	3L_3514243_SNP [dm3] 3L_3514243_SNP [dm6]	A	C	2.010e^-6	0.017	INTERGENIC
2L	2058670	2L_2058670_SNP [dm3] 2L_2058670_SNP [dm6]	C	A	2.016e^-6	0.017	DOWNSTREAM dpr3 & 1 other INTERGENIC
2L	14764769	2L_14764769_SNP [dm3] 2L_14764769_SNP [dm6]	C	T	2.031e^-6	0.017	DOWNSTREAM CSN1a INTERGENIC
2L	19160073	2L_19160073_SNP [dm3] 2L_19160073_SNP [dm6]	G	A	2.062e^-6	0.017	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	3706900	2L_3706900_SNP [dm3] 2L_3706900_SNP [dm6]	C	A	2.086e^-6	0.017	DOWNSTREAM cutlet INTRON CG31777
3L	4056180	3L_4056180_SNP [dm3] 3L_4056180_SNP [dm6]	T	C	2.112e^-6	0.017	INTRON CG1136
3L	4056192	3L_4056192_SNP [dm3] 3L_4056192_SNP [dm6]	T	A	2.112e^-6	0.017	INTRON CG1136
3R	20786149	3R_20786149_SNP [dm3] 3R_24960427_SNP [dm6]	C	A	2.112e^-6	0.017	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8778296	2R_8778296_SNP [dm3] 2R_12890791_SNP [dm6]	G	A	2.145e^-6	0.017	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	7959642	2R_7959642_SNP [dm3] 2R_12072137_SNP [dm6]	G	A	2.171e^-6	0.017	INTRON CG8888
2L	7216531	2L_7216531_SNP [dm3] 2L_7216531_SNP [dm6]	G	T	2.189e^-6	0.017	INTRON CG13784
X	11188154	X_11188154_SNP [dm3] X_11294121_SNP [dm6]	G	A	2.195e^-6	0.017	UPSTREAM CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_dl
2L	2051124	2L_2051124_SNP [dm3] 2L_2051124_SNP [dm6]	T	G	2.212e^-6	0.017	INTERGENIC
X	14874573	X_14874573_SNP [dm3] X_14980540_SNP [dm6]	G	A	2.245e^-6	0.017	INTRON eag
X	14874632	X_14874632_SNP [dm3] X_14980599_SNP [dm6]	T	C	2.245e^-6	0.017	INTRON eag
X	14874640	X_14874640_SNP [dm3] X_14980607_SNP [dm6]	C	T	2.245e^-6	0.017	INTRON eag
X	14875289	X_14875289_SNP [dm3] X_14981256_SNP [dm6]	G	T	2.245e^-6	0.017	INTRON eag
2L	15535266	2L_15535266_SNP [dm3] 2L_15535266_SNP [dm6]	T	A	2.319e^-6	0.018	INTERGENIC
2R	6865936	2R_6865936_INS [dm3] 2R_10978431_INS [dm6]	T	TTTTGCT	2.332e^-6	0.018	UTR_3_PRIME luna
3L	19574555	3L_19574555_SNP [dm3] 3L_19581455_SNP [dm6]	A	C	2.417e^-6	0.019	INTRON Shal
3L	12995292	3L_12995292_SNP [dm3] 3L_13002192_SNP [dm6]	T	G	2.518e^-6	0.019	INTERGENIC
2R	12169106	2R_12169106_SNP [dm3] 2R_16281601_SNP [dm6]	G	T	2.519e^-6	0.019	UTR_3_PRIME CG15705 DOWNSTREAM CG7755
2R	19527622	2R_19527622_SNP [dm3] 2R_23640099_SNP [dm6]	C	T	2.526e^-6	0.019	INTRON retn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	16748837	3L_16748837_SNP [dm3] 3L_16755737_SNP [dm6]	C	T	2.526e^-6	0.019	DOWNSTREAM CG42852 INTERGENIC
3R	20008236	3R_20008236_SNP [dm3] 3R_24182514_SNP [dm6]	C	G	2.526e^-6	0.019	INTRON CG13606	TF binding site mE1_TFBS_chinmo
3L	8570394	3L_8570394_SNP [dm3] 3L_8577294_SNP [dm6]	A	T	2.543e^-6	0.019	START_GAINED CG43078 UTR_5_PRIME CG43078
X	6917558	X_6917558_SNP [dm3] X_7023525_SNP [dm6]	A	C	2.571e^-6	0.019	INTRON CG12541
2L	2015247	2L_2015247_SNP [dm3] 2L_2015247_SNP [dm6]	T	A	2.604e^-6	0.019	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
2L	5063992	2L_5063992_SNP [dm3] 2L_5063992_SNP [dm6]	A	G	2.616e^-6	0.019	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2300418	2L_2300418_SNP [dm3] 2L_2300418_SNP [dm6]	G	T	2.637e^-6	0.019	NON_SYNONYMOUS_CODING CG31949
2R	13780591	2R_13780591_SNP [dm3] 2R_17893086_SNP [dm6]	A	T	2.673e^-6	0.02	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	11188162	X_11188162_SNP [dm3] X_11294129_SNP [dm6]	C	T	2.683e^-6	0.02	UPSTREAM CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_dl
2L	9082549	2L_9082549_SNP [dm3] 2L_9082549_SNP [dm6]	C	A	2.691e^-6	0.02	INTERGENIC
3R	12210079	3R_12210079_SNP [dm3] 3R_16384357_SNP [dm6]	T	A	2.701e^-6	0.02	INTRON ss	regulatory region REDfly_CRMs
X	14874604	X_14874604_SNP [dm3] X_14980571_SNP [dm6]	G	T	2.787e^-6	0.02	INTRON eag
X	14875924	X_14875924_SNP [dm3] X_14981891_SNP [dm6]	A	T	2.787e^-6	0.02	INTRON eag
2R	14545314	2R_14545314_SNP [dm3] 2R_18657809_SNP [dm6]	C	T	2.805e^-6	0.02	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2L	4568447	2L_4568447_SNP [dm3] 2L_4568447_SNP [dm6]	C	T	2.857e^-6	0.02	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2941708	X_2941708_SNP [dm3] X_3047675_SNP [dm6]	T	C	2.875e^-6	0.02	INTRON kirre
2L	11871456	2L_11871456_SNP [dm3] 2L_11871456_SNP [dm6]	G	A	2.890e^-6	0.02	INTRON Pde1c
2L	14061435	2L_14061435_SNP [dm3] 2L_14061435_SNP [dm6]	G	A	2.891e^-6	0.02	UTR_5_PRIME nAChRalpha5
3L	4696545	3L_4696545_SNP [dm3] 3L_4696545_SNP [dm6]	C	T	2.936e^-6	0.021	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	1247249	2L_1247249_SNP [dm3] 2L_1247249_SNP [dm6]	C	T	2.939e^-6	0.021	INTERGENIC
X	3230710	X_3230710_SNP [dm3] X_3336677_SNP [dm6]	T	G	2.970e^-6	0.021	INTRON CR44886 & 1 other
2R	13388353	2R_13388353_SNP [dm3] 2R_17500848_SNP [dm6]	A	T	2.980e^-6	0.021	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12734936	2R_12734936_SNP [dm3] 2R_16847431_SNP [dm6]	C	T	2.985e^-6	0.021	INTERGENIC
2R	16483354	2R_16483354_SNP [dm3] 2R_20595849_SNP [dm6]	G	C	2.999e^-6	0.021	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	2646752	X_2646752_SNP [dm3] X_2752719_SNP [dm6]	A	C	3.015e^-6	0.021	INTRON kirre
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	3.018e^-6	0.021	UPSTREAM CG10635 & 1 other INTERGENIC
2L	11293745	2L_11293745_SNP [dm3] 2L_11293745_SNP [dm6]	A	G	3.032e^-6	0.021	INTERGENIC
3R	24163655	3R_24163655_SNP [dm3] 3R_28337933_SNP [dm6]	C	T	3.075e^-6	0.021	SYNONYMOUS_CODING Gfat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	3.112e^-6	0.021	UPSTREAM CG10635 & 1 other INTERGENIC
2L	9933926	2L_9933926_SNP [dm3] 2L_9933926_SNP [dm6]	A	G	3.128e^-6	0.021	UPSTREAM Cpr30F DOWNSTREAM CG31712 INTERGENIC
2L	10297493	2L_10297493_SNP [dm3] 2L_10297493_SNP [dm6]	T	C	3.129e^-6	0.021	NON_SYNONYMOUS_CODING CYLD UPSTREAM CR44968	TF binding site mE1_TFBS_sens
3L	16412642	3L_16412642_SNP [dm3] 3L_16419542_SNP [dm6]	C	T	3.129e^-6	0.021	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	16412732	3L_16412732_SNP [dm3] 3L_16419632_SNP [dm6]	G	A	3.129e^-6	0.021	UTR_5_PRIME CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	2766672	X_2766672_SNP [dm3] X_2872639_SNP [dm6]	G	A	3.129e^-6	0.021	NON_SYNONYMOUS_CODING CG14416 INTRON kirre
2R	16483341	2R_16483341_SNP [dm3] 2R_20595836_SNP [dm6]	C	T	3.138e^-6	0.021	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	8638992	3L_8638992_SNP [dm3] 3L_8645892_SNP [dm6]	G	C	3.144e^-6	0.021	SPLICE_SITE_REGION CG13305 SYNONYMOUS_CODING CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14878464	X_14878464_SNP [dm3] X_14984431_SNP [dm6]	G	A	3.158e^-6	0.021	INTRON eag	TF binding site BDTNP1_TFBS_dl
2L	12896192	2L_12896192_SNP [dm3] 2L_12896192_SNP [dm6]	A	G	3.196e^-6	0.021	INTERGENIC
2R	13398984	2R_13398984_SNP [dm3] 2R_17511479_SNP [dm6]	A	T	3.198e^-6	0.021	UPSTREAM CG4847 DOWNSTREAM CG34193 INTERGENIC
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	3.233e^-6	0.021	UPSTREAM CG10635 & 1 other INTERGENIC
2R	15207720	2R_15207720_SNP [dm3] 2R_19320215_SNP [dm6]	C	A	3.278e^-6	0.021	INTRON Rgk1
2R	15207750	2R_15207750_SNP [dm3] 2R_19320245_SNP [dm6]	T	C	3.278e^-6	0.021	INTRON Rgk1
2R	15209990	2R_15209990_SNP [dm3] 2R_19322485_SNP [dm6]	C	T	3.278e^-6	0.021	INTRON Rgk1
2R	15209994	2R_15209994_SNP [dm3] 2R_19322489_SNP [dm6]	G	A	3.278e^-6	0.021	INTRON Rgk1
2R	15210127	2R_15210127_SNP [dm3] 2R_19322622_SNP [dm6]	C	T	3.278e^-6	0.021	INTRON Rgk1
3L	2157509	3L_2157509_SNP [dm3] 3L_2157509_SNP [dm6]	C	A	3.288e^-6	0.021	NON_SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2158197	3L_2158197_SNP [dm3] 3L_2158197_SNP [dm6]	C	T	3.288e^-6	0.021	INTRON CG15822	TF binding site mE1_TFBS_chinmo
3L	2158346	3L_2158346_SNP [dm3] 3L_2158346_SNP [dm6]	C	A	3.288e^-6	0.021	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2158449	3L_2158449_SNP [dm3] 3L_2158449_SNP [dm6]	C	T	3.288e^-6	0.021	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14867677	X_14867677_SNP [dm3] X_14973644_SNP [dm6]	C	A	3.297e^-6	0.021	INTRON eag
X	14867871	X_14867871_SNP [dm3] X_14973838_SNP [dm6]	A	G	3.297e^-6	0.021	INTRON eag
X	14868628	X_14868628_SNP [dm3] X_14974595_SNP [dm6]	C	T	3.297e^-6	0.021	INTRON eag
X	6740582	X_6740582_SNP [dm3] X_6846549_SNP [dm6]	C	G	3.297e^-6	0.021	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8869590	2R_8869590_DEL [dm3] 2R_12982085_DEL [dm6]	AA	A	3.328e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14877793	X_14877793_SNP [dm3] X_14983760_SNP [dm6]	T	G	3.403e^-6	0.021	INTRON eag
2R	13835098	2R_13835098_SNP [dm3] 2R_17947593_SNP [dm6]	G	T	3.455e^-6	0.021	INTERGENIC
3L	5835554	3L_5835554_SNP [dm3] 3L_5842454_SNP [dm6]	G	A	3.479e^-6	0.021	SYNONYMOUS_CODING vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19474788	3L_19474788_SNP [dm3] 3L_19481688_SNP [dm6]	C	T	3.520e^-6	0.022	INTERGENIC
X	10471572	X_10471572_SNP [dm3] X_10577539_SNP [dm6]	C	G	3.552e^-6	0.022	INTRON spri
2L	1238386	2L_1238386_SNP [dm3] 2L_1238386_SNP [dm6]	C	T	3.567e^-6	0.022	INTERGENIC
2L	1240063	2L_1240063_SNP [dm3] 2L_1240063_SNP [dm6]	G	A	3.567e^-6	0.022	UTR_5_PRIME CG5397
2L	1241151	2L_1241151_SNP [dm3] 2L_1241151_SNP [dm6]	A	C	3.567e^-6	0.022	NON_SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
X	4247192	X_4247192_SNP [dm3] X_4353159_SNP [dm6]	G	A	3.606e^-6	0.022	INTRON norpA
4	1023449	4_1023449_SNP [dm3] 4_1002823_SNP [dm6]	C	T	3.648e^-6	0.022	INTRON toy
X	2648293	X_2648293_SNP [dm3] X_2754260_SNP [dm6]	C	G	3.751e^-6	0.022	INTRON kirre
2L	16836741	2L_16836741_SNP [dm3] 2L_16836741_SNP [dm6]	A	C	3.756e^-6	0.022	NON_SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
2L	16839699	2L_16839699_SNP [dm3] 2L_16839699_SNP [dm6]	A	T	3.756e^-6	0.022	UPSTREAM SclB INTRON SclB & 1 other
2L	16840834	2L_16840834_SNP [dm3] 2L_16840834_SNP [dm6]	T	A	3.756e^-6	0.022	INTRON SclA & 1 other
2L	16842531	2L_16842531_SNP [dm3] 2L_16842531_SNP [dm6]	A	G	3.756e^-6	0.022	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
2L	16842620	2L_16842620_SNP [dm3] 2L_16842620_SNP [dm6]	T	G	3.756e^-6	0.022	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
2L	16845095	2L_16845095_INS [dm3] 2L_16845095_INS [dm6]	A	AA	3.756e^-6	0.022	INTRON CG13284
2L	16856166	2L_16856166_SNP [dm3] 2L_16856166_SNP [dm6]	G	A	3.756e^-6	0.022	INTRON CG31809	transposable element FlyBase
2L	16857478	2L_16857478_SNP [dm3] 2L_16857478_SNP [dm6]	T	G	3.756e^-6	0.022	INTRON CG31809	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16861748	2L_16861748_SNP [dm3] 2L_16861748_SNP [dm6]	A	G	3.756e^-6	0.022	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	18191579	X_18191579_SNP [dm3] X_18297546_SNP [dm6]	C	T	3.786e^-6	0.022	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	18191582	X_18191582_SNP [dm3] X_18297549_SNP [dm6]	T	G	3.786e^-6	0.022	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	7608491	X_7608491_SNP [dm3] X_7714458_SNP [dm6]	G	A	3.797e^-6	0.022	NON_SYNONYMOUS_CODING CG15478	TF binding site mE1_TFBS_chinmo
3L	855394	3L_855394_SNP [dm3] 3L_855394_SNP [dm6]	A	G	3.851e^-6	0.022	INTRON dpr20
2L	8944635	2L_8944635_SNP [dm3] 2L_8944635_SNP [dm6]	G	A	3.857e^-6	0.022	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9077725	2L_9077725_SNP [dm3] 2L_9077725_SNP [dm6]	G	A	3.863e^-6	0.022	NON_SYNONYMOUS_CODING CG12439
2L	4514272	2L_4514272_SNP [dm3] 2L_4514272_SNP [dm6]	T	A	3.883e^-6	0.022	INTRON dp
2L	11288248	2L_11288248_SNP [dm3] 2L_11288248_SNP [dm6]	T	C	3.888e^-6	0.022	INTERGENIC
2L	11288249	2L_11288249_SNP [dm3] 2L_11288249_SNP [dm6]	T	A	3.888e^-6	0.022	INTERGENIC
2R	8122385	2R_8122385_SNP [dm3] 2R_12234880_SNP [dm6]	T	A	3.958e^-6	0.022	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	9599145	2L_9599145_SNP [dm3] 2L_9599145_SNP [dm6]	A	T	3.962e^-6	0.022	INTRON CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12042655	2R_12042655_SNP [dm3] 2R_16155150_SNP [dm6]	T	A	3.971e^-6	0.022	INTRON lbk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16531176	3L_16531176_SNP [dm3] 3L_16538076_SNP [dm6]	G	A	4.001e^-6	0.022	INTRON CG43373
3L	2157506	3L_2157506_SNP [dm3] 3L_2157506_SNP [dm6]	G	A	4.005e^-6	0.022	SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547821	3L_8547821_SNP [dm3] 3L_8554721_SNP [dm6]	A	T	4.027e^-6	0.022	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12626005	2R_12626005_SNP [dm3] 2R_16738500_SNP [dm6]	C	A	4.091e^-6	0.023	UPSTREAM CG43104 DOWNSTREAM CR44464 INTERGENIC
3L	5256833	3L_5256833_SNP [dm3] 3L_5263733_SNP [dm6]	G	A	4.091e^-6	0.023	INTRON shep
3L	5650548	3L_5650548_SNP [dm3] 3L_5657448_SNP [dm6]	G	C	4.091e^-6	0.023	UPSTREAM sif DOWNSTREAM lin-28 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9081759	2L_9081759_SNP [dm3] 2L_9081759_SNP [dm6]	A	T	4.124e^-6	0.023	INTERGENIC
3L	8640204	3L_8640204_SNP [dm3] 3L_8647104_SNP [dm6]	C	G	4.140e^-6	0.023	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3972926	X_3972926_SNP [dm3] X_4078893_SNP [dm6]	G	A	4.180e^-6	0.023	SYNONYMOUS_CODING CG43689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	1240104	2L_1240104_SNP [dm3] 2L_1240104_SNP [dm6]	C	T	4.205e^-6	0.023	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	16372095	2L_16372095_SNP [dm3] 2L_16372095_SNP [dm6]	T	A	4.212e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	612724	3L_612724_SNP [dm3] 3L_612724_SNP [dm6]	T	C	4.250e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11747400	3L_11747400_DEL [dm3] 3L_11754300_DEL [dm6]	TAT	T	4.265e^-6	0.023	INTRON CG6024
X	10471445	X_10471445_SNP [dm3] X_10577412_SNP [dm6]	G	A	4.329e^-6	0.023	INTRON spri
3L	16463123	3L_16463123_INS [dm3] 3L_16470023_INS [dm6]	A	ATCTTTA	4.447e^-6	0.024	DOWNSTREAM aos INTRON CG33158
2R	8874187	2R_8874187_SNP [dm3] 2R_12986682_SNP [dm6]	C	T	4.447e^-6	0.024	DOWNSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	16837774	2L_16837774_DEL [dm3] 2L_16837774_DEL [dm6]	TGTCAAGCCATTTTGT...	G	4.567e^-6	0.024	UPSTREAM SclB & 2 others INTERGENIC
3L	2660093	3L_2660093_SNP [dm3] 3L_2660093_SNP [dm6]	C	G	4.612e^-6	0.025	SYNONYMOUS_CODING CG33233 INTRON Fife
2R	9228529	2R_9228529_SNP [dm3] 2R_13341024_SNP [dm6]	C	T	4.634e^-6	0.025	INTRON CR44206	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16841185	2L_16841185_SNP [dm3] 2L_16841185_SNP [dm6]	T	G	4.658e^-6	0.025	INTRON SclA & 1 other
2L	16842434	2L_16842434_SNP [dm3] 2L_16842434_SNP [dm6]	T	A	4.658e^-6	0.025	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
2L	5351378	2L_5351378_SNP [dm3] 2L_5351378_SNP [dm6]	A	C	4.662e^-6	0.025	INTRON nompC
X	12988140	X_12988140_SNP [dm3] X_13094107_SNP [dm6]	C	A	4.738e^-6	0.025	UPSTREAM CG2200 DOWNSTREAM lic INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8869624	2R_8869624_SNP [dm3] 2R_12982119_SNP [dm6]	T	A	4.773e^-6	0.025	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9082230	2L_9082230_SNP [dm3] 2L_9082230_SNP [dm6]	G	T	4.778e^-6	0.025	INTERGENIC
2L	9082683	2L_9082683_SNP [dm3] 2L_9082683_SNP [dm6]	T	C	4.783e^-6	0.025	INTERGENIC
2L	2066494	2L_2066494_SNP [dm3] 2L_2066494_SNP [dm6]	G	A	4.824e^-6	0.025	INTRON dpr3
2R	10547156	2R_10547156_SNP [dm3] 2R_14659651_SNP [dm6]	C	T	4.857e^-6	0.025	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
2L	8947027	2L_8947027_SNP [dm3] 2L_8947027_SNP [dm6]	C	A	4.920e^-6	0.025	UPSTREAM C1GalTA INTRON C1GalTA
2L	8947030	2L_8947030_SNP [dm3] 2L_8947030_SNP [dm6]	G	C	4.920e^-6	0.025	UPSTREAM C1GalTA INTRON C1GalTA
2L	8947031	2L_8947031_DEL [dm3] 2L_8947031_DEL [dm6]	CAA	C	4.920e^-6	0.025	UPSTREAM C1GalTA INTRON C1GalTA
2L	8947036	2L_8947036_SNP [dm3] 2L_8947036_SNP [dm6]	A	T	4.920e^-6	0.025	UPSTREAM C1GalTA INTRON C1GalTA
2L	8947110	2L_8947110_SNP [dm3] 2L_8947110_SNP [dm6]	T	G	4.920e^-6	0.025	UPSTREAM C1GalTA INTRON C1GalTA
2L	16845053	2L_16845053_INS [dm3] 2L_16845053_INS [dm6]	A	AAAGCTATTA	4.929e^-6	0.025	INTRON CG13284
2L	1649748	2L_1649748_SNP [dm3] 2L_1649748_SNP [dm6]	G	A	4.930e^-6	0.025	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9082398	2L_9082398_SNP [dm3] 2L_9082398_SNP [dm6]	A	C	4.933e^-6	0.025	INTERGENIC
2R	15207957	2R_15207957_INS [dm3] 2R_19320452_INS [dm6]	A	ATTTACCATTACCATTACCA...	4.950e^-6	0.025	INTRON Rgk1
2R	13217829	2R_13217829_SNP [dm3] 2R_17330324_SNP [dm6]	A	T	4.957e^-6	0.025	INTRON mbl
2R	13217830	2R_13217830_SNP [dm3] 2R_17330325_SNP [dm6]	A	T	4.957e^-6	0.025	INTRON mbl
2L	4200878	2L_4200878_SNP [dm3] 2L_4200878_SNP [dm6]	C	T	4.969e^-6	0.025	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	7875426	X_7875426_SNP [dm3] X_7981393_SNP [dm6]	A	C	4.981e^-6	0.025	INTRON sn
3L	5708014	3L_5708014_SNP [dm3] 3L_5714914_SNP [dm6]	T	C	4.982e^-6	0.025	DOWNSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15207525	2R_15207525_DEL [dm3] 2R_19320020_DEL [dm6]	AA	A	5.044e^-6	0.025	INTRON Rgk1
3R	20027359	3R_20027359_SNP [dm3] 3R_24201637_SNP [dm6]	C	T	5.048e^-6	0.025	UPSTREAM twin INTRON twin
2L	9082239	2L_9082239_SNP [dm3] 2L_9082239_SNP [dm6]	T	A	5.152e^-6	0.025	INTERGENIC
2R	8775292	2R_8775292_SNP [dm3] 2R_12887787_SNP [dm6]	T	A	5.157e^-6	0.025	INTRON vg
2L	2289520	2L_2289520_SNP [dm3] 2L_2289520_SNP [dm6]	T	A	5.220e^-6	0.026	UPSTREAM CG17237 DOWNSTREAM robl22E INTERGENIC
2L	9082716	2L_9082716_SNP [dm3] 2L_9082716_SNP [dm6]	G	T	5.241e^-6	0.026	INTERGENIC
X	2648225	X_2648225_SNP [dm3] X_2754192_SNP [dm6]	C	T	5.256e^-6	0.026	INTRON kirre
2L	12202298	2L_12202298_SNP [dm3] 2L_12202298_SNP [dm6]	A	C	5.286e^-6	0.026	INTRON aret
2L	11288243	2L_11288243_SNP [dm3] 2L_11288243_SNP [dm6]	G	T	5.288e^-6	0.026	INTERGENIC
3L	4096819	3L_4096819_SNP [dm3] 3L_4096819_SNP [dm6]	C	T	5.371e^-6	0.026	INTRON CG14995	TF binding site mE1_TFBS_cad
X	19159525	X_19159525_SNP [dm3] X_19265492_SNP [dm6]	G	A	5.371e^-6	0.026	INTRON Vav	TF binding site mE1_TFBS_HSA
3L	19386227	3L_19386227_SNP [dm3] 3L_19393127_SNP [dm6]	G	T	5.395e^-6	0.026	INTRON CG32206
X	11198851	X_11198851_SNP [dm3] X_11304818_SNP [dm6]	C	T	5.411e^-6	0.026	INTERGENIC
2L	16844366	2L_16844366_DEL [dm3] 2L_16844366_DEL [dm6]	CGTAAGTAAGCAGC...	C	5.476e^-6	0.026	INTRON CG13284
2L	16842352	2L_16842352_SNP [dm3] 2L_16842352_SNP [dm6]	A	G	5.559e^-6	0.027	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
X	5307091	X_5307091_SNP [dm3] X_5413058_SNP [dm6]	G	A	5.661e^-6	0.027	UTR_3_PRIME spoon DOWNSTREAM spoon
2L	16850601	2L_16850601_DEL [dm3] 2L_16850601_DEL [dm6]	GTCACACTTTCATCGTGTGC...	G	5.666e^-6	0.027	INTRON CG31810
3R	21444734	3R_21444734_SNP [dm3] 3R_25619012_SNP [dm6]	C	T	5.781e^-6	0.028	SYNONYMOUS_CODING CG5071 INTRON Npl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18519315	2L_18519315_SNP [dm3] 2L_18519315_SNP [dm6]	C	T	5.860e^-6	0.028	INTRON CG10211
3L	5650484	3L_5650484_DEL [dm3] 3L_5657384_DEL [dm6]	CA	C	5.862e^-6	0.028	UPSTREAM sif DOWNSTREAM lin-28 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4338528	2L_4338528_SNP [dm3] 2L_4338528_SNP [dm6]	T	C	5.871e^-6	0.028	UPSTREAM Atet INTRON Atet
2L	16842222	2L_16842222_SNP [dm3] 2L_16842222_SNP [dm6]	A	C	5.888e^-6	0.028	DOWNSTREAM CG13284 & 2 others INTERGENIC
3R	8773111	3R_8773111_SNP [dm3] 3R_12947389_SNP [dm6]	T	G	5.895e^-6	0.028	INTERGENIC
2L	16857370	2L_16857370_SNP [dm3] 2L_16857370_SNP [dm6]	C	A	5.903e^-6	0.028	INTRON CG31809	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	21211807	X_21211807_SNP [dm3] X_21340780_SNP [dm6]	G	A	6.064e^-6	0.028	NON_SYNONYMOUS_CODING fliI	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8947163	2L_8947163_SNP [dm3] 2L_8947163_SNP [dm6]	T	A	6.157e^-6	0.029	UPSTREAM C1GalTA INTRON C1GalTA
2R	18531883	2R_18531883_SNP [dm3] 2R_22644378_SNP [dm6]	A	T	6.204e^-6	0.029	UPSTREAM Ugt58Fa DOWNSTREAM CG2852 INTERGENIC
2L	15331439	2L_15331439_SNP [dm3] 2L_15331439_SNP [dm6]	A	T	6.224e^-6	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15331442	2L_15331442_SNP [dm3] 2L_15331442_SNP [dm6]	G	A	6.224e^-6	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7624224	3L_7624224_SNP [dm3] 3L_7631124_SNP [dm6]	T	C	6.286e^-6	0.029	INTRON CG33275
X	10471599	X_10471599_DEL [dm3] X_10577566_DEL [dm6]	TT	A	6.307e^-6	0.029	INTRON spri
2L	16850546	2L_16850546_SNP [dm3] 2L_16850546_SNP [dm6]	A	C	6.307e^-6	0.029	INTRON CG31810
2R	4867073	2R_4867073_SNP [dm3] 2R_8979568_SNP [dm6]	G	C	6.336e^-6	0.029	INTRON CG8213
2L	18510249	2L_18510249_SNP [dm3] 2L_18510249_SNP [dm6]	C	A	6.484e^-6	0.03	INTRON CG10178
2L	16941562	2L_16941562_SNP [dm3] 2L_16941562_SNP [dm6]	G	A	6.502e^-6	0.03	INTERGENIC
2R	13614580	2R_13614580_SNP [dm3] 2R_17727075_SNP [dm6]	G	T	6.522e^-6	0.03	SYNONYMOUS_CODING CG4975 START_GAINED CG4984 UTR_5_PRIME CG4984 UPSTREAM Snx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11285957	2L_11285957_SNP [dm3] 2L_11285957_SNP [dm6]	G	T	6.526e^-6	0.03	UPSTREAM Osi21 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2034006	2L_2034006_SNP [dm3] 2L_2034006_SNP [dm6]	T	C	6.653e^-6	0.03	SYNONYMOUS_CODING CG42296	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8876133	2R_8876133_SNP [dm3] 2R_12988628_SNP [dm6]	A	T	6.714e^-6	0.03	INTERGENIC
3R	20008072	3R_20008072_SNP [dm3] 3R_24182350_SNP [dm6]	A	G	6.866e^-6	0.031	DOWNSTREAM CG13606 INTRON CG13606
2R	8869570	2R_8869570_SNP [dm3] 2R_12982065_SNP [dm6]	G	C	7.045e^-6	0.032	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8869571	2R_8869571_SNP [dm3] 2R_12982066_SNP [dm6]	T	C	7.045e^-6	0.032	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8097660	2R_8097660_SNP [dm3] 2R_12210155_SNP [dm6]	G	A	7.171e^-6	0.032	SPLICE_SITE_REGION Sr-CII INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18501391	2L_18501391_SNP [dm3] 2L_18501391_SNP [dm6]	C	T	7.216e^-6	0.032	UTR_5_PRIME kon UPSTREAM kon	TF binding site BDTNP1_TFBS_da
2L	7216228	2L_7216228_SNP [dm3] 2L_7216228_SNP [dm6]	G	C	7.243e^-6	0.032	INTRON CG13784
2R	20183256	2R_20183256_SNP [dm3] 2R_24295733_SNP [dm6]	C	T	7.262e^-6	0.032	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
2L	9082363	2L_9082363_SNP [dm3] 2L_9082363_SNP [dm6]	T	C	7.306e^-6	0.032	INTERGENIC
2R	20579056	2R_20579056_SNP [dm3] 2R_24691533_SNP [dm6]	C	T	7.320e^-6	0.032	UTR_3_PRIME ST6Gal	TF binding site mE1_TFBS_chinmo
2R	20579489	2R_20579489_SNP [dm3] 2R_24691966_SNP [dm6]	A	C	7.320e^-6	0.032	INTRON ST6Gal	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8947040	2L_8947040_SNP [dm3] 2L_8947040_SNP [dm6]	T	A	7.330e^-6	0.032	UPSTREAM C1GalTA INTRON C1GalTA
3R	22903016	3R_22903016_SNP [dm3] 3R_27077294_SNP [dm6]	G	A	7.404e^-6	0.032	INTRON CG14257
2R	12059827	2R_12059827_SNP [dm3] 2R_16172322_SNP [dm6]	A	G	7.451e^-6	0.033	SPLICE_SITE_REGION Ptp52F INTRON Ptp52F	TF binding site mE1_TFBS_cad
2L	12133881	2L_12133881_SNP [dm3] 2L_12133881_SNP [dm6]	A	T	7.636e^-6	0.033	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5303516	3L_5303516_SNP [dm3] 3L_5310416_SNP [dm6]	G	A	7.637e^-6	0.033	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2024650	2L_2024650_SNP [dm3] 2L_2024650_SNP [dm6]	C	T	7.655e^-6	0.033	INTRON CG4238
2R	20371830	2R_20371830_SNP [dm3] 2R_24484307_SNP [dm6]	G	A	7.708e^-6	0.033	SYNONYMOUS_CODING CG13579
2R	12603479	2R_12603479_SNP [dm3] 2R_16715974_SNP [dm6]	C	T	7.724e^-6	0.033	INTRON CG30463
2R	12603648	2R_12603648_SNP [dm3] 2R_16716143_SNP [dm6]	T	C	7.724e^-6	0.033	INTRON CG30463
2L	10122913	2L_10122913_SNP [dm3] 2L_10122913_SNP [dm6]	G	T	7.732e^-6	0.033	UPSTREAM CG13135 INTRON CG44153 & 1 other
2R	6866515	2R_6866515_SNP [dm3] 2R_10979010_SNP [dm6]	T	G	7.774e^-6	0.033	UTR_3_PRIME luna	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2L	4499671	2L_4499671_SNP [dm3] 2L_4499671_SNP [dm6]	A	G	7.871e^-6	0.034	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6281830	2R_6281830_SNP [dm3] 2R_10394325_SNP [dm6]	A	T	7.928e^-6	0.034	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2R	12584940	2R_12584940_SNP [dm3] 2R_16697435_SNP [dm6]	T	A	7.951e^-6	0.034	INTRON CG30463
2L	220721	2L_220721_SNP [dm3] 2L_220721_SNP [dm6]	G	T	8.093e^-6	0.034	DOWNSTREAM CR44220 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	5361424	3L_5361424_SNP [dm3] 3L_5368324_SNP [dm6]	T	G	8.105e^-6	0.034	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3L	5951041	3L_5951041_SNP [dm3] 3L_5957941_SNP [dm6]	G	A	8.119e^-6	0.034	INTERGENIC
2L	7216202	2L_7216202_SNP [dm3] 2L_7216202_SNP [dm6]	A	T	8.189e^-6	0.035	INTRON CG13784
X	10749251	X_10749251_SNP [dm3] X_10855218_SNP [dm6]	C	A	8.239e^-6	0.035	UTR_3_PRIME sofe UPSTREAM feo	TF binding site BDTNP1_TFBS_dl
2L	16842311	2L_16842311_SNP [dm3] 2L_16842311_SNP [dm6]	T	C	8.277e^-6	0.035	UTR_3_PRIME CG13284 DOWNSTREAM CG13284 & 2 others
2L	16842312	2L_16842312_SNP [dm3] 2L_16842312_SNP [dm6]	A	T	8.277e^-6	0.035	UTR_3_PRIME CG13284 DOWNSTREAM CG13284 & 2 others
2L	16372140	2L_16372140_SNP [dm3] 2L_16372140_SNP [dm6]	T	A	8.353e^-6	0.035	INTERGENIC	TF binding site mE1_TFBS_cad
3L	610406	3L_610406_SNP [dm3] 3L_610406_SNP [dm6]	G	A	8.451e^-6	0.035	UPSTREAM CR44513 INTERGENIC
2R	8100161	2R_8100161_SNP [dm3] 2R_12212656_SNP [dm6]	C	A	8.491e^-6	0.035	UPSTREAM Sr-CII INTERGENIC
4	1013022	4_1013022_SNP [dm3] 4_992396_SNP [dm6]	C	A	8.500e^-6	0.035	INTRON toy
2L	17111482	2L_17111482_SNP [dm3] 2L_17111482_SNP [dm6]	T	A	8.509e^-6	0.035	INTERGENIC
2L	4386564	2L_4386564_SNP [dm3] 2L_4386564_SNP [dm6]	G	A	8.573e^-6	0.036	SYNONYMOUS_CODING Psf2 UPSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8226035	2L_8226035_SNP [dm3] 2L_8226035_SNP [dm6]	C	T	8.727e^-6	0.036	SYNONYMOUS_CODING Pvr
2L	10448197	2L_10448197_SNP [dm3] 2L_10448197_SNP [dm6]	T	C	8.735e^-6	0.036	SYNONYMOUS_CODING loh
X	3531943	X_3531943_SNP [dm3] X_3637910_SNP [dm6]	T	C	8.738e^-6	0.036	INTRON AstA-R1
3L	17581168	3L_17581168_SNP [dm3] 3L_17588068_SNP [dm6]	C	A	8.812e^-6	0.036	INTRON Eip74EF
2L	10027685	2L_10027685_SNP [dm3] 2L_10027685_SNP [dm6]	G	T	8.861e^-6	0.036	NON_SYNONYMOUS_CODING CG13127
2L	1417435	2L_1417435_SNP [dm3] 2L_1417435_SNP [dm6]	A	T	8.924e^-6	0.036	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1351765	2R_1351765_SNP [dm3] 2R_5464260_SNP [dm6]	G	C	8.977e^-6	0.037	INTERGENIC	transposable element FlyBase
2L	16842319	2L_16842319_SNP [dm3] 2L_16842319_SNP [dm6]	T	G	8.977e^-6	0.037	UTR_3_PRIME CG13284 DOWNSTREAM CG13284 & 2 others
3L	896048	3L_896048_SNP [dm3] 3L_896048_SNP [dm6]	T	G	9.037e^-6	0.037	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
3L	10070833	3L_10070833_SNP [dm3] 3L_10077733_SNP [dm6]	T	C	9.062e^-6	0.037	INTRON dpr6
2R	12603689	2R_12603689_SNP [dm3] 2R_16716184_SNP [dm6]	A	T	9.116e^-6	0.037	UTR_5_PRIME CG30463 INTRON CG30463
2R	12603691	2R_12603691_SNP [dm3] 2R_16716186_SNP [dm6]	C	T	9.116e^-6	0.037	UTR_5_PRIME CG30463 INTRON CG30463
2L	4706820	2L_4706820_SNP [dm3] 2L_4706820_SNP [dm6]	T	C	9.130e^-6	0.037	INTRON CG34351
2L	17195172	2L_17195172_SNP [dm3] 2L_17195172_SNP [dm6]	C	T	9.155e^-6	0.037	INTRON beat-IIIc
3L	5361486	3L_5361486_SNP [dm3] 3L_5368386_SNP [dm6]	A	C	9.260e^-6	0.037	UPSTREAM CG10635 & 1 other INTERGENIC
3L	19435598	3L_19435598_DEL [dm3] 3L_19442498_DEL [dm6]	ATGGTATTAATCAAGATATT...	A	9.285e^-6	0.037	INTRON CG33062
3R	13839409	3R_13839409_SNP [dm3] 3R_18013687_SNP [dm6]	A	T	9.285e^-6	0.037	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
3R	2055043	3R_2055043_SNP [dm3] 3R_6229321_SNP [dm6]	G	C	9.303e^-6	0.037	DOWNSTREAM Osi5 INTERGENIC
X	2647590	X_2647590_SNP [dm3] X_2753557_SNP [dm6]	A	C	9.314e^-6	0.037	INTRON kirre
X	2647644	X_2647644_SNP [dm3] X_2753611_SNP [dm6]	T	A	9.314e^-6	0.037	INTRON kirre
3L	10999000	3L_10999000_SNP [dm3] 3L_11005900_SNP [dm6]	G	C	9.316e^-6	0.037	INTRON klu
2L	4338358	2L_4338358_SNP [dm3] 2L_4338358_SNP [dm6]	C	T	9.397e^-6	0.037	UPSTREAM Atet INTRON Atet
X	6331717	X_6331717_SNP [dm3] X_6437684_SNP [dm6]	C	A	9.428e^-6	0.037	INTRON CG42340
2R	4869461	2R_4869461_SNP [dm3] 2R_8981956_SNP [dm6]	G	A	9.509e^-6	0.037	INTRON CG8213
2R	20586485	2R_20586485_SNP [dm3] 2R_24698962_SNP [dm6]	G	T	9.622e^-6	0.038	UTR_3_PRIME Mid1
2L	14713250	2L_14713250_SNP [dm3] 2L_14713250_SNP [dm6]	T	C	9.626e^-6	0.038	UTR_3_PRIME CG15282 UPSTREAM CG34165 DOWNSTREAM CG15282
2L	9557367	2L_9557367_INS [dm3] 2L_9557367_INS [dm6]	A	AA	9.718e^-6	0.038	INTRON jp
2L	2050816	2L_2050816_SNP [dm3] 2L_2050816_SNP [dm6]	G	A	9.750e^-6	0.038	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10090936	2L_10090936_SNP [dm3] 2L_10090936_SNP [dm6]	G	C	9.774e^-6	0.038	DOWNSTREAM CG13133 INTRON CG44153
2L	2039670	2L_2039670_DEL [dm3] 2L_2039670_DEL [dm6]	CCATAAAGGCC...	C	9.774e^-6	0.038	UPSTREAM Su_dx_ INTRON Su_dx_
2L	4376108	2L_4376108_SNP [dm3] 2L_4376108_SNP [dm6]	C	T	9.774e^-6	0.038	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5701044	X_5701044_SNP [dm3] X_5807011_SNP [dm6]	C	A	9.850e^-6	0.038	INTERGENIC
X	5701047	X_5701047_MNP [dm3] X_5807014_MNP [dm6]	CATC	TGGA	9.850e^-6	0.038	INTERGENIC
2L	9082322	2L_9082322_SNP [dm3] 2L_9082322_SNP [dm6]	T	A	9.875e^-6	0.038	INTERGENIC
2R	10866085	2R_10866085_SNP [dm3] 2R_14978580_SNP [dm6]	A	T	9.968e^-6	0.038	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2656108	X_2656108_SNP [dm3] X_2762075_SNP [dm6]	T	G	1.002e^-5	0.038	INTRON kirre
X	2657099	X_2657099_SNP [dm3] X_2763066_SNP [dm6]	C	T	1.002e^-5	0.038	INTRON kirre
X	2657105	X_2657105_SNP [dm3] X_2763072_SNP [dm6]	C	T	1.002e^-5	0.038	INTRON kirre
2L	16372134	2L_16372134_SNP [dm3] 2L_16372134_SNP [dm6]	T	A	1.005e^-5	0.038	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4338426	2L_4338426_SNP [dm3] 2L_4338426_SNP [dm6]	A	C	1.010e^-5	0.038	UPSTREAM Atet INTRON Atet
2R	14531618	2R_14531618_SNP [dm3] 2R_18644113_SNP [dm6]	A	G	1.011e^-5	0.038	INTRON SP2637
2R	14531625	2R_14531625_SNP [dm3] 2R_18644120_SNP [dm6]	T	A	1.011e^-5	0.038	INTRON SP2637
2L	4245053	2L_4245053_SNP [dm3] 2L_4245053_SNP [dm6]	C	T	1.025e^-5	0.039	INTERGENIC
2L	6394855	2L_6394855_SNP [dm3] 2L_6394855_SNP [dm6]	C	T	1.026e^-5	0.039	SYNONYMOUS_CODING CG42368 DOWNSTREAM CG42369
2R	4225219	2R_4225219_SNP [dm3] 2R_8337714_SNP [dm6]	G	A	1.031e^-5	0.039	INTRON pdm3
3L	11268534	3L_11268534_SNP [dm3] 3L_11275434_SNP [dm6]	T	A	1.034e^-5	0.039	UPSTREAM CR44720 INTERGENIC
2L	5349051	2L_5349051_SNP [dm3] 2L_5349051_SNP [dm6]	A	G	1.036e^-5	0.039	INTRON nompC
2L	22053119	2L_22053119_SNP [dm3] 2L_22053119_SNP [dm6]	A	T	1.036e^-5	0.039	DOWNSTREAM CG34173 INTERGENIC
2L	12133869	2L_12133869_SNP [dm3] 2L_12133869_SNP [dm6]	T	C	1.037e^-5	0.039	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1459317	2L_1459317_SNP [dm3] 2L_1459317_SNP [dm6]	G	A	1.046e^-5	0.039	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	20039326	X_20039326_INS [dm3] X_20145293_INS [dm6]	A	ACCACAAACC	1.053e^-5	0.039	INTERGENIC
X	20039328	X_20039328_SNP [dm3] X_20145295_SNP [dm6]	G	A	1.053e^-5	0.039	INTERGENIC
X	20039330	X_20039330_SNP [dm3] X_20145297_SNP [dm6]	T	G	1.053e^-5	0.039	INTERGENIC
X	20039333	X_20039333_MNP [dm3] X_20145300_MNP [dm6]	ACA	GGG	1.053e^-5	0.039	INTERGENIC
X	20039339	X_20039339_SNP [dm3] X_20145306_SNP [dm6]	G	A	1.053e^-5	0.039	INTERGENIC
2L	16849244	2L_16849244_SNP [dm3] 2L_16849244_SNP [dm6]	C	T	1.062e^-5	0.039	SYNONYMOUS_CODING CG31810 UPSTREAM CG13284	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13835088	2R_13835088_SNP [dm3] 2R_17947583_SNP [dm6]	G	A	1.070e^-5	0.039	INTERGENIC
4	1034014	4_1034014_SNP [dm3] 4_1013388_SNP [dm6]	T	C	1.080e^-5	0.04	UTR_3_PRIME PlexA DOWNSTREAM PlexA
3R	13839411	3R_13839411_SNP [dm3] 3R_18013689_SNP [dm6]	G	T	1.081e^-5	0.04	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
2L	9082335	2L_9082335_SNP [dm3] 2L_9082335_SNP [dm6]	T	A	1.083e^-5	0.04	INTERGENIC
2L	594294	2L_594294_SNP [dm3] 2L_594294_SNP [dm6]	C	G	1.090e^-5	0.04	SYNONYMOUS_CODING Gsc UTR_5_PRIME Gsc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7484092	3R_7484092_SNP [dm3] 3R_11658370_SNP [dm6]	C	T	1.092e^-5	0.04	INTRON CG42327	TF binding site mE1_TFBS_HSA
2R	15207447	2R_15207447_SNP [dm3] 2R_19319942_SNP [dm6]	A	G	1.092e^-5	0.04	INTRON Rgk1
2R	16818020	2R_16818020_SNP [dm3] 2R_20930515_SNP [dm6]	G	T	1.109e^-5	0.04	INTRON Rx
3R	20786592	3R_20786592_SNP [dm3] 3R_24960870_SNP [dm6]	C	T	1.111e^-5	0.04	INTERGENIC
2L	11907031	2L_11907031_SNP [dm3] 2L_11907031_SNP [dm6]	A	T	1.112e^-5	0.04	INTRON Pde1c
3L	1056283	3L_1056283_SNP [dm3] 3L_1056283_SNP [dm6]	G	T	1.132e^-5	0.041	INTRON bab1
3L	2549826	3L_2549826_SNP [dm3] 3L_2549826_SNP [dm6]	G	A	1.132e^-5	0.041	INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6621578	X_6621578_SNP [dm3] X_6727545_SNP [dm6]	T	A	1.134e^-5	0.041	UPSTREAM CG3168 INTRON CG3168	TF binding site BDTNP1_TFBS_dl
2L	2039588	2L_2039588_SNP [dm3] 2L_2039588_SNP [dm6]	G	A	1.138e^-5	0.041	UPSTREAM Su_dx_ INTRON Su_dx_
X	2647797	X_2647797_SNP [dm3] X_2753764_SNP [dm6]	A	G	1.138e^-5	0.041	INTRON kirre
2L	2038975	2L_2038975_SNP [dm3] 2L_2038975_SNP [dm6]	A	T	1.155e^-5	0.041	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14557325	2R_14557325_SNP [dm3] 2R_18669820_SNP [dm6]	C	T	1.157e^-5	0.041	INTRON edl
2L	1244488	2L_1244488_SNP [dm3] 2L_1244488_SNP [dm6]	A	T	1.167e^-5	0.041	INTERGENIC
2R	13217825	2R_13217825_SNP [dm3] 2R_17330320_SNP [dm6]	A	G	1.173e^-5	0.041	INTRON mbl
2L	1070442	2L_1070442_SNP [dm3] 2L_1070442_SNP [dm6]	A	G	1.176e^-5	0.041	INTRON S	TF binding site mE1_TFBS_cad
2L	6705816	2L_6705816_SNP [dm3] 2L_6705816_SNP [dm6]	C	T	1.176e^-5	0.041	INTRON Tsp
3L	2490409	3L_2490409_SNP [dm3] 3L_2490409_SNP [dm6]	C	T	1.176e^-5	0.041	UTR_5_PRIME CG1146 UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2656990	X_2656990_SNP [dm3] X_2762957_SNP [dm6]	T	C	1.178e^-5	0.041	INTRON kirre
X	2657076	X_2657076_SNP [dm3] X_2763043_SNP [dm6]	G	C	1.178e^-5	0.041	INTRON kirre
2L	5428966	2L_5428966_SNP [dm3] 2L_5428966_SNP [dm6]	G	A	1.188e^-5	0.042	INTERGENIC
2L	2015633	2L_2015633_SNP [dm3] 2L_2015633_SNP [dm6]	C	T	1.189e^-5	0.042	INTRON CG4238
2R	12966153	2R_12966153_SNP [dm3] 2R_17078648_SNP [dm6]	G	A	1.189e^-5	0.042	INTRON CG30460
2L	6394870	2L_6394870_SNP [dm3] 2L_6394870_SNP [dm6]	C	T	1.192e^-5	0.042	SYNONYMOUS_CODING CG42368 DOWNSTREAM CG42369
2L	16860832	2L_16860832_DEL [dm3] 2L_16860832_DEL [dm6]	TT	T	1.196e^-5	0.042	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
X	2659310	X_2659310_SNP [dm3] X_2765277_SNP [dm6]	C	T	1.206e^-5	0.042	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10998970	3L_10998970_SNP [dm3] 3L_11005870_SNP [dm6]	T	C	1.211e^-5	0.042	INTRON klu
2L	9082602	2L_9082602_SNP [dm3] 2L_9082602_SNP [dm6]	T	A	1.220e^-5	0.042	INTERGENIC
2L	4288316	2L_4288316_INS [dm3] 2L_4288316_INS [dm6]	A	AACTTAAAGTTTCTCA...	1.225e^-5	0.042	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12660810	2R_12660810_SNP [dm3] 2R_16773305_SNP [dm6]	G	A	1.229e^-5	0.042	SYNONYMOUS_CODING Sod2 UPSTREAM unc-104 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8122403	2R_8122403_SNP [dm3] 2R_12234898_SNP [dm6]	G	T	1.232e^-5	0.042	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122414	2R_8122414_SNP [dm3] 2R_12234909_SNP [dm6]	A	T	1.232e^-5	0.042	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	5349042	2L_5349042_SNP [dm3] 2L_5349042_SNP [dm6]	G	T	1.238e^-5	0.043	INTRON nompC
2R	15209062	2R_15209062_SNP [dm3] 2R_19321557_SNP [dm6]	C	G	1.250e^-5	0.043	INTRON Rgk1	TF binding site mE1_TFBS_inv
2R	4225068	2R_4225068_SNP [dm3] 2R_8337563_SNP [dm6]	G	A	1.257e^-5	0.043	INTRON pdm3
X	20039352	X_20039352_SNP [dm3] X_20145319_SNP [dm6]	T	C	1.259e^-5	0.043	INTERGENIC
2R	12726168	2R_12726168_SNP [dm3] 2R_16838663_SNP [dm6]	C	G	1.264e^-5	0.043	EXON CR43650	TF binding site BDTNP1_TFBS_Med
3R	1893723	3R_1893723_SNP [dm3] 3R_6068001_SNP [dm6]	A	G	1.264e^-5	0.043	INTERGENIC
X	14873146	X_14873146_SNP [dm3] X_14979113_SNP [dm6]	T	C	1.279e^-5	0.043	INTRON eag
X	11200802	X_11200802_SNP [dm3] X_11306769_SNP [dm6]	T	G	1.280e^-5	0.043	INTERGENIC
X	2631477	X_2631477_SNP [dm3] X_2737444_SNP [dm6]	A	C	1.282e^-5	0.043	INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2631487	X_2631487_SNP [dm3] X_2737454_SNP [dm6]	A	C	1.282e^-5	0.043	INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2631489	X_2631489_SNP [dm3] X_2737456_SNP [dm6]	G	A	1.282e^-5	0.043	INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2631496	X_2631496_SNP [dm3] X_2737463_SNP [dm6]	G	T	1.282e^-5	0.043	SPLICE_SITE_REGION crm INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10122909	2L_10122909_SNP [dm3] 2L_10122909_SNP [dm6]	C	A	1.283e^-5	0.043	UPSTREAM CG13135 INTRON CG44153 & 1 other
3L	5361485	3L_5361485_SNP [dm3] 3L_5368385_SNP [dm6]	A	C	1.286e^-5	0.043	UPSTREAM CG10635 & 1 other INTERGENIC
3L	5361487	3L_5361487_DEL [dm3] 3L_5368387_DEL [dm6]	AA	A	1.286e^-5	0.043	UPSTREAM CG10635 & 1 other INTERGENIC
X	12535072	X_12535072_DEL [dm3] X_12641039_DEL [dm6]	CACAGCCACACTAACAAC...	C	1.288e^-5	0.043	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	13881203	X_13881203_INS [dm3] X_13987170_INS [dm6]	G	GAG	1.302e^-5	0.043	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	19466504	3L_19466504_DEL [dm3] 3L_19473404_DEL [dm6]	CCGAATTT	C	1.315e^-5	0.044	DOWNSTREAM CG12519 INTERGENIC
X	12617116	X_12617116_INS [dm3] X_12723083_INS [dm6]	T	GATTTTGCGTAGGTTACAAT...	1.317e^-5	0.044	INTRON Smr & 1 other
2L	7707521	2L_7707521_SNP [dm3] 2L_7707521_SNP [dm6]	C	A	1.318e^-5	0.044	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
3L	11925681	3L_11925681_SNP [dm3] 3L_11932581_SNP [dm6]	G	A	1.331e^-5	0.044	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11925704	3L_11925704_SNP [dm3] 3L_11932604_SNP [dm6]	C	G	1.331e^-5	0.044	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4500176	2L_4500176_SNP [dm3] 2L_4500176_SNP [dm6]	A	C	1.332e^-5	0.044	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5854619	3L_5854619_SNP [dm3] 3L_5861519_SNP [dm6]	A	G	1.342e^-5	0.044	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5854714	3L_5854714_SNP [dm3] 3L_5861614_SNP [dm6]	T	G	1.342e^-5	0.044	INTERGENIC
3L	5854779	3L_5854779_DEL [dm3] 3L_5861679_DEL [dm6]	TG	T	1.342e^-5	0.044	INTERGENIC
3L	5854794	3L_5854794_SNP [dm3] 3L_5861694_SNP [dm6]	A	G	1.342e^-5	0.044	INTERGENIC
3L	5859607	3L_5859607_SNP [dm3] 3L_5866507_SNP [dm6]	G	C	1.342e^-5	0.044	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13477833	3R_13477833_SNP [dm3] 3R_17652111_SNP [dm6]	A	C	1.348e^-5	0.044	DOWNSTREAM CR45223 INTRON CG14322
2L	7708940	2L_7708940_SNP [dm3] 2L_7708940_SNP [dm6]	G	A	1.350e^-5	0.044	SYNONYMOUS_CODING Tep3 EXON CR44990
2R	6643041	2R_6643041_SNP [dm3] 2R_10755536_SNP [dm6]	G	A	1.354e^-5	0.044	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2487017	3L_2487017_SNP [dm3] 3L_2487017_SNP [dm6]	C	T	1.354e^-5	0.044	INTRON CG45186
3R	20787665	3R_20787665_SNP [dm3] 3R_24961943_SNP [dm6]	G	A	1.362e^-5	0.044	INTERGENIC
2L	12008344	2L_12008344_SNP [dm3] 2L_12008344_SNP [dm6]	G	T	1.365e^-5	0.044	START_GAINED Rh5 UTR_5_PRIME Rh5 UPSTREAM Rh5	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5217132	3L_5217132_SNP [dm3] 3L_5224032_SNP [dm6]	A	T	1.365e^-5	0.044	INTRON shep
2R	13385102	2R_13385102_DEL [dm3] 2R_17497597_DEL [dm6]	TGCTTGGTTCCCG...	T	1.366e^-5	0.044	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2042465	2L_2042465_SNP [dm3] 2L_2042465_SNP [dm6]	T	C	1.367e^-5	0.044	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2037441	2L_2037441_SNP [dm3] 2L_2037441_SNP [dm6]	G	A	1.374e^-5	0.044	UPSTREAM Su_dx_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	5333150	2L_5333150_SNP [dm3] 2L_5333150_SNP [dm6]	T	C	1.375e^-5	0.044	INTRON fusl	TF binding site mE1_TFBS_cad
2L	3115656	2L_3115656_SNP [dm3] 2L_3115656_SNP [dm6]	C	T	1.380e^-5	0.044	INTRON toc
2R	15943342	2R_15943342_SNP [dm3] 2R_20055837_SNP [dm6]	A	T	1.380e^-5	0.044	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1244554	2L_1244554_SNP [dm3] 2L_1244554_SNP [dm6]	A	G	1.382e^-5	0.044	INTERGENIC
3R	2088576	3R_2088576_SNP [dm3] 3R_6262854_SNP [dm6]	A	T	1.385e^-5	0.044	DOWNSTREAM Osi9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6231066	2R_6231066_SNP [dm3] 2R_10343561_SNP [dm6]	A	G	1.387e^-5	0.044	INTRON CG42732
2R	16584395	2R_16584395_DEL [dm3] 2R_20696890_DEL [dm6]	CTGAT	C	1.389e^-5	0.044	INTERGENIC
2L	1070109	2L_1070109_SNP [dm3] 2L_1070109_SNP [dm6]	C	T	1.393e^-5	0.044	INTRON S	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	9081939	2L_9081939_SNP [dm3] 2L_9081939_SNP [dm6]	T	C	1.399e^-5	0.044	INTERGENIC
2L	9077527	2L_9077527_SNP [dm3] 2L_9077527_SNP [dm6]	T	G	1.403e^-5	0.044	NON_SYNONYMOUS_CODING CG12439
2L	10130931	2L_10130931_SNP [dm3] 2L_10130931_SNP [dm6]	G	T	1.410e^-5	0.044	INTRON CG44153
X	2634892	X_2634892_SNP [dm3] X_2740859_SNP [dm6]	A	G	1.414e^-5	0.045	UTR_5_PRIME kirre INTRON Syx4 & 1 other
2R	11450057	2R_11450057_INS [dm3] 2R_15562552_INS [dm6]	A	AATGGTAAAA	1.423e^-5	0.045	DOWNSTREAM CG8195 & 1 other INTERGENIC
X	13881541	X_13881541_SNP [dm3] X_13987508_SNP [dm6]	A	T	1.430e^-5	0.045	INTRON mamo	TF binding site mE1_TFBS_HSA
3R	22076556	3R_22076556_SNP [dm3] 3R_26250834_SNP [dm6]	C	T	1.436e^-5	0.045	INTRON CR42745
2R	6869277	2R_6869277_DEL [dm3] 2R_10981772_DEL [dm6]	TT	T	1.436e^-5	0.045	UTR_3_PRIME luna
2R	15210073	2R_15210073_SNP [dm3] 2R_19322568_SNP [dm6]	C	T	1.436e^-5	0.045	INTRON Rgk1
X	5929622	X_5929622_SNP [dm3] X_6035589_SNP [dm6]	A	G	1.440e^-5	0.045	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	10544693	X_10544693_SNP [dm3] X_10650660_SNP [dm6]	T	C	1.447e^-5	0.045	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4688546	3L_4688546_SNP [dm3] 3L_4688546_SNP [dm6]	G	T	1.448e^-5	0.045	SYNONYMOUS_CODING CG7514 DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad
3L	4688827	3L_4688827_SNP [dm3] 3L_4688827_SNP [dm6]	A	T	1.448e^-5	0.045	UPSTREAM CG7514 DOWNSTREAM CG18418 INTERGENIC
3L	4688980	3L_4688980_SNP [dm3] 3L_4688980_SNP [dm6]	A	G	1.448e^-5	0.045	UTR_3_PRIME CG18418 UPSTREAM CG7514
3L	4689069	3L_4689069_SNP [dm3] 3L_4689069_SNP [dm6]	G	T	1.448e^-5	0.045	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
3L	4689224	3L_4689224_SNP [dm3] 3L_4689224_SNP [dm6]	G	A	1.448e^-5	0.045	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
3L	4689384	3L_4689384_SNP [dm3] 3L_4689384_SNP [dm6]	A	T	1.448e^-5	0.045	NON_SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
2R	17515471	2R_17515471_SNP [dm3] 2R_21627966_SNP [dm6]	C	A	1.451e^-5	0.045	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15612467	2L_15612467_SNP [dm3] 2L_15612467_SNP [dm6]	A	G	1.457e^-5	0.045	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC
3R	7440237	3R_7440237_SNP [dm3] 3R_11614515_SNP [dm6]	A	G	1.462e^-5	0.045	INTRON Jupiter	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
3L	12619788	3L_12619788_SNP [dm3] 3L_12626688_SNP [dm6]	C	A	1.468e^-5	0.045	INTERGENIC
2L	14709879	2L_14709879_SNP [dm3] 2L_14709879_SNP [dm6]	T	A	1.481e^-5	0.045	INTERGENIC
2L	12133554	2L_12133554_SNP [dm3] 2L_12133554_SNP [dm6]	G	C	1.490e^-5	0.045	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8122413	2R_8122413_SNP [dm3] 2R_12234908_SNP [dm6]	C	T	1.496e^-5	0.046	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	8632536	X_8632536_SNP [dm3] X_8738503_SNP [dm6]	C	A	1.502e^-5	0.046	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7216283	2L_7216283_SNP [dm3] 2L_7216283_SNP [dm6]	A	T	1.513e^-5	0.046	INTRON CG13784
2R	16402070	2R_16402070_SNP [dm3] 2R_20514565_SNP [dm6]	G	A	1.514e^-5	0.046	INTERGENIC
2L	4621683	2L_4621683_SNP [dm3] 2L_4621683_SNP [dm6]	G	A	1.520e^-5	0.046	DOWNSTREAM CR44609 INTERGENIC
2L	4622381	2L_4622381_SNP [dm3] 2L_4622381_SNP [dm6]	A	G	1.520e^-5	0.046	INTERGENIC
X	20039348	X_20039348_SNP [dm3] X_20145315_SNP [dm6]	G	A	1.532e^-5	0.046	INTERGENIC
X	4246174	X_4246174_SNP [dm3] X_4352141_SNP [dm6]	A	G	1.533e^-5	0.046	INTRON norpA
X	4247089	X_4247089_SNP [dm3] X_4353056_SNP [dm6]	A	C	1.533e^-5	0.046	INTRON norpA
2L	2865301	2L_2865301_SNP [dm3] 2L_2865301_SNP [dm6]	A	G	1.533e^-5	0.046	SYNONYMOUS_CODING CG2991	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6592994	2R_6592994_SNP [dm3] 2R_10705489_SNP [dm6]	G	C	1.547e^-5	0.046	UPSTREAM stan INTRON stan
2R	16194591	2R_16194591_DEL [dm3] 2R_20307086_DEL [dm6]	AC	A	1.550e^-5	0.046	INTRON CG11200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7043284	2R_7043284_DEL [dm3] 2R_11155779_DEL [dm6]	ACA	C	1.561e^-5	0.047	DOWNSTREAM CG13230 INTRON CG13229
2L	9082208	2L_9082208_SNP [dm3] 2L_9082208_SNP [dm6]	G	A	1.564e^-5	0.047	INTERGENIC
2L	2299334	2L_2299334_SNP [dm3] 2L_2299334_SNP [dm6]	T	A	1.575e^-5	0.047	UPSTREAM CG31949 INTERGENIC
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	1.576e^-5	0.047	INTRON ss	regulatory region REDfly_CRMs
2L	3115683	2L_3115683_SNP [dm3] 2L_3115683_SNP [dm6]	C	T	1.578e^-5	0.047	INTRON toc
2L	5927663	2L_5927663_SNP [dm3] 2L_5927663_SNP [dm6]	T	C	1.581e^-5	0.047	INTRON dsf
3L	5854842	3L_5854842_SNP [dm3] 3L_5861742_SNP [dm6]	A	T	1.584e^-5	0.047	INTERGENIC
3L	4067289	3L_4067289_SNP [dm3] 3L_4067289_SNP [dm6]	C	T	1.591e^-5	0.047	SYNONYMOUS_CODING wit	TF binding site mE1_TFBS_sens
2L	6860682	2L_6860682_SNP [dm3] 2L_6860682_SNP [dm6]	G	A	1.591e^-5	0.047	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18513586	2L_18513586_SNP [dm3] 2L_18513586_SNP [dm6]	T	G	1.594e^-5	0.047	DOWNSTREAM CG10178 INTERGENIC
3R	19424572	3R_19424572_SNP [dm3] 3R_23598850_SNP [dm6]	A	G	1.596e^-5	0.047	NON_SYNONYMOUS_CODING CG10183
2R	7400421	2R_7400421_SNP [dm3] 2R_11512916_SNP [dm6]	C	T	1.602e^-5	0.047	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20589471	X_20589471_SNP [dm3] X_20718444_SNP [dm6]	G	C	1.603e^-5	0.047	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	21004338	2L_21004338_SNP [dm3] 2L_21004338_SNP [dm6]	T	C	1.603e^-5	0.047	INTRON CG42238	TF binding site mE1_TFBS_inv
2L	13341920	2L_13341920_SNP [dm3] 2L_13341920_SNP [dm6]	G	A	1.635e^-5	0.048	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	6643074	2R_6643074_SNP [dm3] 2R_10755569_SNP [dm6]	C	T	1.638e^-5	0.048	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1127003	2L_1127003_SNP [dm3] 2L_1127003_SNP [dm6]	T	G	1.646e^-5	0.048	INTRON Pino
2R	11484470	2R_11484470_SNP [dm3] 2R_15596965_SNP [dm6]	G	T	1.646e^-5	0.048	INTERGENIC
2R	13639121	2R_13639121_SNP [dm3] 2R_17751616_SNP [dm6]	C	A	1.646e^-5	0.048	INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13640133	2R_13640133_SNP [dm3] 2R_17752628_SNP [dm6]	A	G	1.646e^-5	0.048	NON_SYNONYMOUS_CODING CG5002 DOWNSTREAM CG6385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11096353	3R_11096353_SNP [dm3] 3R_15270631_SNP [dm6]	A	T	1.648e^-5	0.048	UTR_3_PRIME Cp190 DOWNSTREAM Zip88E
3R	20662211	3R_20662211_SNP [dm3] 3R_24836489_SNP [dm6]	G	C	1.654e^-5	0.048	UPSTREAM sosie DOWNSTREAM CR45216 INTRON sosie
X	6355488	X_6355488_SNP [dm3] X_6461455_SNP [dm6]	G	A	1.675e^-5	0.048	INTRON CG42340
2R	17473550	2R_17473550_INS [dm3] 2R_21586045_INS [dm6]	T	TTTTTCTTATCCATAGCCTA...	1.685e^-5	0.048	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17473553	2R_17473553_SNP [dm3] 2R_21586048_SNP [dm6]	A	T	1.685e^-5	0.048	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15207761	2R_15207761_SNP [dm3] 2R_19320256_SNP [dm6]	T	C	1.690e^-5	0.048	INTRON Rgk1
2R	13835103	2R_13835103_SNP [dm3] 2R_17947598_SNP [dm6]	A	T	1.695e^-5	0.048	INTERGENIC
2R	13835108	2R_13835108_SNP [dm3] 2R_17947603_SNP [dm6]	T	C	1.695e^-5	0.048	INTERGENIC
3L	10782570	3L_10782570_SNP [dm3] 3L_10789470_SNP [dm6]	C	G	1.698e^-5	0.048	EXON CR44545
3R	19672614	3R_19672614_SNP [dm3] 3R_23846892_SNP [dm6]	C	T	1.700e^-5	0.048	INTRON CG34355	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4688864	3L_4688864_SNP [dm3] 3L_4688864_SNP [dm6]	C	T	1.707e^-5	0.048	UPSTREAM CG7514 DOWNSTREAM CG18418 INTERGENIC
3L	4688874	3L_4688874_DEL [dm3] 3L_4688874_DEL [dm6]	TC	T	1.707e^-5	0.048	UPSTREAM CG7514 DOWNSTREAM CG18418 INTERGENIC
3L	4688877	3L_4688877_SNP [dm3] 3L_4688877_SNP [dm6]	T	A	1.707e^-5	0.048	UPSTREAM CG7514 DOWNSTREAM CG18418 INTERGENIC
2L	3115571	2L_3115571_SNP [dm3] 2L_3115571_SNP [dm6]	G	T	1.718e^-5	0.048	INTRON toc
2L	2289558	2L_2289558_SNP [dm3] 2L_2289558_SNP [dm6]	A	T	1.720e^-5	0.048	UPSTREAM CG17237 DOWNSTREAM robl22E INTERGENIC
3L	4691848	3L_4691848_SNP [dm3] 3L_4691848_SNP [dm6]	G	T	1.724e^-5	0.048	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	18539133	2R_18539133_SNP [dm3] 2R_22651628_SNP [dm6]	G	C	1.733e^-5	0.048	NON_SYNONYMOUS_CODING nsr DOWNSTREAM Cyp6d2	TF binding site mE1_TFBS_inv
2R	17515642	2R_17515642_SNP [dm3] 2R_21628137_SNP [dm6]	A	G	1.739e^-5	0.048	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3830179	3L_3830179_SNP [dm3] 3L_3830179_SNP [dm6]	C	A	1.740e^-5	0.048	INTRON enc
3L	3830182	3L_3830182_SNP [dm3] 3L_3830182_SNP [dm6]	T	A	1.740e^-5	0.048	INTRON enc
3L	5172426	3L_5172426_SNP [dm3] 3L_5179326_SNP [dm6]	C	T	1.740e^-5	0.048	INTRON shep
4	1043930	4_1043930_SNP [dm3] 4_1023304_SNP [dm6]	C	A	1.740e^-5	0.048	NON_SYNONYMOUS_CODING PlexA INTRON PlexA
4	1102735	4_1102735_SNP [dm3] 4_1082109_SNP [dm6]	A	T	1.740e^-5	0.048	INTRON Actbeta
4	1150202	4_1150202_SNP [dm3] 4_1129576_SNP [dm6]	C	T	1.740e^-5	0.048	NON_SYNONYMOUS_CODING CG11155
4	172480	4_172480_SNP [dm3] 4_151854_SNP [dm6]	G	T	1.740e^-5	0.048	NON_SYNONYMOUS_CODING CG32006
4	827375	4_827375_SNP [dm3] 4_806749_SNP [dm6]	T	G	1.740e^-5	0.048	INTRON Sox102F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
4	943316	4_943316_SNP [dm3] 4_922690_SNP [dm6]	A	C	1.740e^-5	0.048	INTRON eIF4G	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	9672519	X_9672519_SNP [dm3] X_9778486_SNP [dm6]	C	T	1.740e^-5	0.048	UPSTREAM CG1354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18322524	2L_18322524_SNP [dm3] 2L_18322524_SNP [dm6]	T	C	1.750e^-5	0.048	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
X	22073649	X_22073649_SNP [dm3] X_22671813_SNP [dm6]	A	C	1.751e^-5	0.048	INTRON CR44997
3L	12173701	3L_12173701_SNP [dm3] 3L_12180601_SNP [dm6]	A	G	1.760e^-5	0.049	INTRON CAH2
2R	16194583	2R_16194583_SNP [dm3] 2R_20307078_SNP [dm6]	C	A	1.764e^-5	0.049	INTRON CG11200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16194612	2R_16194612_SNP [dm3] 2R_20307107_SNP [dm6]	A	C	1.764e^-5	0.049	INTRON CG11200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17660095	3R_17660095_DEL [dm3] 3R_21834373_DEL [dm6]	GA	G	1.766e^-5	0.049	DOWNSTREAM Gr93a INTERGENIC
X	3535869	X_3535869_SNP [dm3] X_3641836_SNP [dm6]	A	T	1.779e^-5	0.049	INTRON AstA-R1
X	3535870	X_3535870_SNP [dm3] X_3641837_SNP [dm6]	G	A	1.779e^-5	0.049	INTRON AstA-R1
2R	13639602	2R_13639602_SNP [dm3] 2R_17752097_SNP [dm6]	C	T	1.780e^-5	0.049	INTRON CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16856270	2L_16856270_SNP [dm3] 2L_16856270_SNP [dm6]	A	C	1.782e^-5	0.049	INTRON CG31809	transposable element FlyBase
3L	5361554	3L_5361554_SNP [dm3] 3L_5368454_SNP [dm6]	A	T	1.786e^-5	0.049	UPSTREAM CG10635 & 1 other INTERGENIC
3L	16235251	3L_16235251_SNP [dm3] 3L_16242151_SNP [dm6]	C	T	1.788e^-5	0.049	INTERGENIC
X	15149251	X_15149251_SNP [dm3] X_15255218_SNP [dm6]	G	A	1.792e^-5	0.049	INTERGENIC
X	2658323	X_2658323_DEL [dm3] X_2764290_DEL [dm6]	TT	T	1.802e^-5	0.049	INTRON kirre
2L	5733541	2L_5733541_SNP [dm3] 2L_5733541_SNP [dm6]	G	A	1.804e^-5	0.049	DOWNSTREAM CG11147 INTRON CG11030
2L	15333569	2L_15333569_SNP [dm3] 2L_15333569_SNP [dm6]	T	C	1.804e^-5	0.049	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11503612	3L_11503612_SNP [dm3] 3L_11510512_SNP [dm6]	A	C	1.812e^-5	0.049	SYNONYMOUS_CODING CG33272 DOWNSTREAM Sgs7
2L	1244487	2L_1244487_SNP [dm3] 2L_1244487_SNP [dm6]	A	C	1.819e^-5	0.049	INTERGENIC
3R	11082761	3R_11082761_SNP [dm3] 3R_15257039_SNP [dm6]	G	C	1.826e^-5	0.049	UTR_3_PRIME CG42404 DOWNSTREAM eIF-2gamma
3R	11088013	3R_11088013_SNP [dm3] 3R_15262291_SNP [dm6]	C	T	1.826e^-5	0.049	INTRON eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11093466	3R_11093466_SNP [dm3] 3R_15267744_SNP [dm6]	G	A	1.826e^-5	0.049	NON_SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7078646	2L_7078646_INS [dm3] 2L_7078646_INS [dm6]	G	GG	1.831e^-5	0.049	DOWNSTREAM CR44611 INTRON Pvf2
3R	18451125	3R_18451125_SNP [dm3] 3R_22625403_SNP [dm6]	G	A	1.834e^-5	0.049	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14709877	2L_14709877_SNP [dm3] 2L_14709877_SNP [dm6]	G	T	1.835e^-5	0.049	INTERGENIC
3L	5685289	3L_5685289_SNP [dm3] 3L_5692189_SNP [dm6]	G	T	1.839e^-5	0.049	INTRON sif
2L	1024350	2L_1024350_SNP [dm3] 2L_1024350_SNP [dm6]	A	C	1.843e^-5	0.049	INTRON IA-2
2L	9082376	2L_9082376_SNP [dm3] 2L_9082376_SNP [dm6]	T	A	1.850e^-5	0.049	INTERGENIC
3L	896055	3L_896055_SNP [dm3] 3L_896055_SNP [dm6]	A	T	1.852e^-5	0.049	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
3L	5326688	3L_5326688_SNP [dm3] 3L_5333588_SNP [dm6]	T	C	1.853e^-5	0.049	INTERGENIC
2L	4699994	2L_4699994_SNP [dm3] 2L_4699994_SNP [dm6]	C	G	1.858e^-5	0.049	DOWNSTREAM Taf12L INTRON CG34351
2L	6782503	2L_6782503_SNP [dm3] 2L_6782503_SNP [dm6]	T	C	1.859e^-5	0.049	INTRON nrv1
2R	13638157	2R_13638157_SNP [dm3] 2R_17750652_SNP [dm6]	A	T	1.859e^-5	0.049	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17456270	2L_17456270_SNP [dm3] 2L_17456270_SNP [dm6]	C	A	1.879e^-5	0.05	UPSTREAM CG6639 DOWNSTREAM CG18563 INTRON CG5050
3L	11923910	3L_11923910_SNP [dm3] 3L_11930810_SNP [dm6]	T	A	1.881e^-5	0.05	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11924426	3L_11924426_SNP [dm3] 3L_11931326_SNP [dm6]	G	T	1.881e^-5	0.05	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13617994	3L_13617994_SNP [dm3] 3L_13624894_SNP [dm6]	A	C	1.895e^-5	0.05	INTRON bru-3
3R	2076574	3R_2076574_SNP [dm3] 3R_6250852_SNP [dm6]	C	A	1.900e^-5	0.05	UTR_3_PRIME Osi7
3L	613008	3L_613008_SNP [dm3] 3L_613008_SNP [dm6]	C	G	1.909e^-5	0.05	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Stat92E
2R	14346426	2R_14346426_SNP [dm3] 2R_18458921_SNP [dm6]	C	A	1.911e^-5	0.05	DOWNSTREAM CG30116 INTRON CG30116
X	5552065	X_5552065_SNP [dm3] X_5658032_SNP [dm6]	A	C	1.912e^-5	0.05	INTRON CG42265
X	5552066	X_5552066_SNP [dm3] X_5658033_SNP [dm6]	T	C	1.912e^-5	0.05	INTRON CG42265
X	10833085	X_10833085_SNP [dm3] X_10939052_SNP [dm6]	C	T	1.917e^-5	0.05	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3240625	2L_3240625_SNP [dm3] 2L_3240625_SNP [dm6]	T	C	1.958e^-5	0.051	INTERGENIC
X	16807080	X_16807080_DEL [dm3] X_16913047_DEL [dm6]	AA	A	1.970e^-5	0.051	UPSTREAM CG4928 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8775711	2R_8775711_SNP [dm3] 2R_12888206_SNP [dm6]	A	T	1.975e^-5	0.051	INTRON vg
2L	6195555	2L_6195555_SNP [dm3] 2L_6195555_SNP [dm6]	G	T	1.980e^-5	0.051	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2L	6195734	2L_6195734_SNP [dm3] 2L_6195734_SNP [dm6]	C	G	1.980e^-5	0.051	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3L	8640126	3L_8640126_SNP [dm3] 3L_8647026_SNP [dm6]	A	T	1.985e^-5	0.051	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13881199	X_13881199_SNP [dm3] X_13987166_SNP [dm6]	A	G	1.995e^-5	0.051	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5085833	2R_5085833_SNP [dm3] 2R_9198328_SNP [dm6]	A	C	1.995e^-5	0.051	INTRON unpg	transposable element FlyBase
2L	2299405	2L_2299405_SNP [dm3] 2L_2299405_SNP [dm6]	G	T	1.997e^-5	0.051	UPSTREAM CG31949 INTERGENIC
3R	2184082	3R_2184082_SNP [dm3] 3R_6358360_SNP [dm6]	G	A	1.998e^-5	0.051	NON_SYNONYMOUS_CODING Pak	TF binding site mE1_TFBS_cad
2L	10685799	2L_10685799_DEL [dm3] 2L_10685799_DEL [dm6]	TTGCATA	C	1.998e^-5	0.051	DOWNSTREAM CG7296 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	19688414	3R_19688414_SNP [dm3] 3R_23862692_SNP [dm6]	T	A	1.999e^-5	0.051	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13835084	2R_13835084_SNP [dm3] 2R_17947579_SNP [dm6]	A	G	2.002e^-5	0.051	INTERGENIC
2R	15275373	2R_15275373_SNP [dm3] 2R_19387868_SNP [dm6]	A	G	2.009e^-5	0.051	SYNONYMOUS_CODING CG10081
3R	20787824	3R_20787824_SNP [dm3] 3R_24962102_SNP [dm6]	T	G	2.010e^-5	0.051	INTERGENIC
3L	3532106	3L_3532106_SNP [dm3] 3L_3532106_SNP [dm6]	A	G	2.021e^-5	0.052	INTRON Eip63E
2L	9083044	2L_9083044_SNP [dm3] 2L_9083044_SNP [dm6]	G	T	2.029e^-5	0.052	INTERGENIC
2L	2016119	2L_2016119_SNP [dm3] 2L_2016119_SNP [dm6]	G	T	2.033e^-5	0.052	INTRON CG4238
2R	20514412	2R_20514412_SNP [dm3] 2R_24626889_SNP [dm6]	A	C	2.037e^-5	0.052	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12726132	2R_12726132_SNP [dm3] 2R_16838627_SNP [dm6]	C	T	2.043e^-5	0.052	EXON CR43650	TF binding site BDTNP1_TFBS_Med
2R	20337851	2R_20337851_SNP [dm3] 2R_24450328_SNP [dm6]	G	A	2.060e^-5	0.052	DOWNSTREAM CG4563 INTERGENIC
3L	8638977	3L_8638977_DEL [dm3] 3L_8645877_DEL [dm6]	CTGC	C	2.061e^-5	0.052	CODON_DELETION CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	1181892	4_1181892_SNP [dm3] 4_1161266_SNP [dm6]	C	A	2.062e^-5	0.052	INTRON CG32017 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med transposable element FlyBase
2R	14557247	2R_14557247_SNP [dm3] 2R_18669742_SNP [dm6]	A	T	2.078e^-5	0.052	INTRON edl
2R	15210077	2R_15210077_SNP [dm3] 2R_19322572_SNP [dm6]	C	A	2.078e^-5	0.052	INTRON Rgk1
2R	15210082	2R_15210082_SNP [dm3] 2R_19322577_SNP [dm6]	G	A	2.078e^-5	0.052	INTRON Rgk1
2R	14608344	2R_14608344_SNP [dm3] 2R_18720839_SNP [dm6]	C	A	2.101e^-5	0.053	DOWNSTREAM mir-4982 INTRON Hs3st-A
2R	13780456	2R_13780456_SNP [dm3] 2R_17892951_SNP [dm6]	A	C	2.102e^-5	0.053	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13780457	2R_13780457_SNP [dm3] 2R_17892952_SNP [dm6]	T	A	2.102e^-5	0.053	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13780474	2R_13780474_DEL [dm3] 2R_17892969_DEL [dm6]	TCAT	T	2.102e^-5	0.053	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13780483	2R_13780483_SNP [dm3] 2R_17892978_SNP [dm6]	T	C	2.102e^-5	0.053	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13780558	2R_13780558_DEL [dm3] 2R_17893053_DEL [dm6]	TGA	T	2.102e^-5	0.053	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13873234	3L_13873234_SNP [dm3] 3L_13880134_SNP [dm6]	G	A	2.110e^-5	0.053	INTRON dysc & 1 other
2L	5428930	2L_5428930_SNP [dm3] 2L_5428930_SNP [dm6]	C	T	2.114e^-5	0.053	INTERGENIC
2L	5428976	2L_5428976_SNP [dm3] 2L_5428976_SNP [dm6]	C	T	2.114e^-5	0.053	INTERGENIC
X	2639696	X_2639696_SNP [dm3] X_2745663_SNP [dm6]	C	A	2.119e^-5	0.053	INTRON kirre
3L	22046110	3L_22046110_SNP [dm3] 3L_22053010_SNP [dm6]	T	A	2.132e^-5	0.053	INTRON Oct-TyrR
2L	5513408	2L_5513408_SNP [dm3] 2L_5513408_SNP [dm6]	A	G	2.141e^-5	0.053	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	3513208	3L_3513208_SNP [dm3] 3L_3513208_SNP [dm6]	A	C	2.142e^-5	0.053	UPSTREAM ImpE2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10527606	3L_10527606_SNP [dm3] 3L_10534506_SNP [dm6]	T	A	2.143e^-5	0.053	INTRON A2bp1
2R	16997687	2R_16997687_SNP [dm3] 2R_21110182_SNP [dm6]	A	T	2.160e^-5	0.053	INTRON ktub
3L	12395996	3L_12395996_SNP [dm3] 3L_12402896_SNP [dm6]	T	C	2.160e^-5	0.053	UTR_3_PRIME CG32103 UPSTREAM Smyd4 DOWNSTREAM CG32103
2R	6750098	2R_6750098_SNP [dm3] 2R_10862593_SNP [dm6]	G	T	2.177e^-5	0.054	INTRON CG30015
2L	2016133	2L_2016133_SNP [dm3] 2L_2016133_SNP [dm6]	A	T	2.208e^-5	0.054	INTRON CG4238
2R	10100313	2R_10100313_INS [dm3] 2R_14212808_INS [dm6]	G	GG	2.227e^-5	0.055	UPSTREAM Sox15 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4060437	2R_4060437_SNP [dm3] 2R_8172932_SNP [dm6]	T	G	2.233e^-5	0.055	DOWNSTREAM Mlh1 INTRON CG14757
X	2639175	X_2639175_SNP [dm3] X_2745142_SNP [dm6]	G	C	2.241e^-5	0.055	INTRON kirre
X	2639178	X_2639178_SNP [dm3] X_2745145_SNP [dm6]	T	C	2.241e^-5	0.055	INTRON kirre
X	2639308	X_2639308_SNP [dm3] X_2745275_SNP [dm6]	C	T	2.241e^-5	0.055	INTRON kirre
X	2639323	X_2639323_SNP [dm3] X_2745290_SNP [dm6]	A	C	2.241e^-5	0.055	INTRON kirre
2L	9933920	2L_9933920_INS [dm3] 2L_9933920_INS [dm6]	C	CCACTGACAC	2.248e^-5	0.055	UPSTREAM Cpr30F DOWNSTREAM CG31712 INTERGENIC
X	14881637	X_14881637_SNP [dm3] X_14987604_SNP [dm6]	A	G	2.250e^-5	0.055	INTRON eag	TF binding site BDTNP1_TFBS_dl
X	14882486	X_14882486_SNP [dm3] X_14988453_SNP [dm6]	T	A	2.250e^-5	0.055	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
X	14884147	X_14884147_SNP [dm3] X_14990114_SNP [dm6]	T	C	2.250e^-5	0.055	INTRON eag
3L	9476257	3L_9476257_SNP [dm3] 3L_9483157_SNP [dm6]	A	C	2.265e^-5	0.055	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7976343	3L_7976343_SNP [dm3] 3L_7983243_SNP [dm6]	G	C	2.270e^-5	0.055	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16024557	3L_16024557_SNP [dm3] 3L_16031457_SNP [dm6]	T	C	2.287e^-5	0.055	UTR_3_PRIME Notum DOWNSTREAM mir-4941	TF binding site mE1_TFBS_cad
2L	6394864	2L_6394864_SNP [dm3] 2L_6394864_SNP [dm6]	A	G	2.291e^-5	0.055	SYNONYMOUS_CODING CG42368 DOWNSTREAM CG42369
2L	16371895	2L_16371895_SNP [dm3] 2L_16371895_SNP [dm6]	C	A	2.295e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	7395670	3L_7395670_SNP [dm3] 3L_7402570_SNP [dm6]	C	A	2.299e^-5	0.055	SYNONYMOUS_CODING CG8560 DOWNSTREAM CG18417	TF binding site mE1_TFBS_HSA
2L	9073955	2L_9073955_SNP [dm3] 2L_9073955_SNP [dm6]	G	A	2.305e^-5	0.055	INTERGENIC
X	5552088	X_5552088_SNP [dm3] X_5658055_SNP [dm6]	C	A	2.307e^-5	0.055	INTRON CG42265
2R	16176779	2R_16176779_SNP [dm3] 2R_20289274_SNP [dm6]	C	T	2.325e^-5	0.056	NON_SYNONYMOUS_CODING Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13477435	3R_13477435_SNP [dm3] 3R_17651713_SNP [dm6]	T	G	2.325e^-5	0.056	DOWNSTREAM CR45223 INTRON CG14322
2R	13385160	2R_13385160_SNP [dm3] 2R_17497655_SNP [dm6]	C	T	2.326e^-5	0.056	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14767498	3L_14767498_SNP [dm3] 3L_14774398_SNP [dm6]	C	T	2.332e^-5	0.056	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_chinmo
X	21952125	X_21952125_SNP [dm3] X_22550289_SNP [dm6]	A	T	2.364e^-5	0.056	INTERGENIC
2L	4620839	2L_4620839_SNP [dm3] 2L_4620839_SNP [dm6]	C	T	2.366e^-5	0.056	EXON CR44609
2L	10685765	2L_10685765_SNP [dm3] 2L_10685765_SNP [dm6]	T	A	2.369e^-5	0.056	DOWNSTREAM CG7296 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	20011895	2L_20011895_SNP [dm3] 2L_20011895_SNP [dm6]	T	C	2.401e^-5	0.057	INTRON CG43861
3L	8595855	3L_8595855_SNP [dm3] 3L_8602755_SNP [dm6]	T	A	2.404e^-5	0.057	SYNONYMOUS_CODING CG5989 DOWNSTREAM snoRNA:U49:66Db & 1 other	TF binding site mE1_TFBS_sens
X	2696481	X_2696481_SNP [dm3] X_2802448_SNP [dm6]	G	T	2.412e^-5	0.057	INTRON kirre
3R	13477602	3R_13477602_SNP [dm3] 3R_17651880_SNP [dm6]	T	G	2.414e^-5	0.057	DOWNSTREAM CR45223 INTRON CG14322
3R	11094199	3R_11094199_SNP [dm3] 3R_15268477_SNP [dm6]	T	C	2.420e^-5	0.057	UTR_5_PRIME CG14864 UPSTREAM Zip88E & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	4926056	2L_4926056_SNP [dm3] 2L_4926056_SNP [dm6]	A	G	2.433e^-5	0.058	UTR_5_PRIME hoe1 INTRON hoe1
X	18191666	X_18191666_INS [dm3] X_18297633_INS [dm6]	T	TCCAGCCTCAGT...	2.439e^-5	0.058	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	8122876	2R_8122876_SNP [dm3] 2R_12235371_SNP [dm6]	C	T	2.444e^-5	0.058	UPSTREAM CR44313 INTERGENIC
X	10544543	X_10544543_SNP [dm3] X_10650510_SNP [dm6]	C	A	2.446e^-5	0.058	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12079640	2R_12079640_SNP [dm3] 2R_16192135_SNP [dm6]	T	C	2.472e^-5	0.058	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad
2R	19346721	2R_19346721_SNP [dm3] 2R_23459198_SNP [dm6]	T	A	2.476e^-5	0.058	UPSTREAM skpF INTRON CG43795
2R	11686748	2R_11686748_SNP [dm3] 2R_15799243_SNP [dm6]	C	A	2.479e^-5	0.058	INTRON Zasp52 & 1 other
2R	13780451	2R_13780451_SNP [dm3] 2R_17892946_SNP [dm6]	G	A	2.482e^-5	0.058	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13780507	2R_13780507_SNP [dm3] 2R_17893002_SNP [dm6]	T	A	2.482e^-5	0.058	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13780590	2R_13780590_SNP [dm3] 2R_17893085_SNP [dm6]	C	T	2.484e^-5	0.058	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13997676	X_13997676_SNP [dm3] X_14103643_SNP [dm6]	T	C	2.488e^-5	0.058	UPSTREAM tRNA:S4:12Ee DOWNSTREAM tRNA:R:12Ef INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20684133	X_20684133_SNP [dm3] X_20813106_SNP [dm6]	G	A	2.502e^-5	0.058	INTRON shakB
X	14871088	X_14871088_SNP [dm3] X_14977055_SNP [dm6]	G	A	2.522e^-5	0.058	INTRON eag
X	14871116	X_14871116_SNP [dm3] X_14977083_SNP [dm6]	T	C	2.522e^-5	0.058	INTRON eag
X	14872256	X_14872256_SNP [dm3] X_14978223_SNP [dm6]	C	G	2.522e^-5	0.058	INTRON eag
X	14873822	X_14873822_SNP [dm3] X_14979789_SNP [dm6]	T	C	2.522e^-5	0.058	INTRON eag
2L	4798651	2L_4798651_SNP [dm3] 2L_4798651_SNP [dm6]	G	A	2.534e^-5	0.059	INTRON Clect27
2L	4338366	2L_4338366_SNP [dm3] 2L_4338366_SNP [dm6]	A	T	2.546e^-5	0.059	UPSTREAM Atet INTRON Atet
2L	5349037	2L_5349037_SNP [dm3] 2L_5349037_SNP [dm6]	A	G	2.547e^-5	0.059	INTRON nompC
2L	17393677	2L_17393677_SNP [dm3] 2L_17393677_SNP [dm6]	T	G	2.553e^-5	0.059	INTRON CLIP-190
3L	1218766	3L_1218766_SNP [dm3] 3L_1218766_SNP [dm6]	C	A	2.557e^-5	0.059	UPSTREAM LysP INTRON mwh
3L	11503615	3L_11503615_SNP [dm3] 3L_11510515_SNP [dm6]	T	G	2.574e^-5	0.059	SYNONYMOUS_CODING CG33272 DOWNSTREAM Sgs7
3L	20647639	3L_20647639_SNP [dm3] 3L_20654539_SNP [dm6]	T	C	2.593e^-5	0.06	DOWNSTREAM CR44685 INTERGENIC
2R	18966587	2R_18966587_SNP [dm3] 2R_23079064_SNP [dm6]	T	A	2.617e^-5	0.06	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	4758306	X_4758306_DEL [dm3] X_4864273_DEL [dm6]	TT	T	2.629e^-5	0.06	INTRON CG42594
2R	13945625	2R_13945625_SNP [dm3] 2R_18058120_SNP [dm6]	C	A	2.635e^-5	0.06	EXON CR45314
X	2639650	X_2639650_SNP [dm3] X_2745617_SNP [dm6]	T	C	2.642e^-5	0.06	INTRON kirre	TF binding site mE1_TFBS_HSA
2L	17195131	2L_17195131_SNP [dm3] 2L_17195131_SNP [dm6]	A	T	2.644e^-5	0.06	INTRON beat-IIIc
2R	12386460	2R_12386460_SNP [dm3] 2R_16498955_SNP [dm6]	T	G	2.648e^-5	0.06	SYNONYMOUS_CODING CG7813	TF binding site BDTNP1_TFBS_dl
2R	12386467	2R_12386467_SNP [dm3] 2R_16498962_SNP [dm6]	C	T	2.648e^-5	0.06	SYNONYMOUS_CODING CG7813	TF binding site BDTNP1_TFBS_dl
2L	4189246	2L_4189246_SNP [dm3] 2L_4189246_SNP [dm6]	C	A	2.651e^-5	0.06	UTR_3_PRIME lectin-24Db DOWNSTREAM CG3714	TF binding site mE1_TFBS_inv
2R	13757682	2R_13757682_SNP [dm3] 2R_17870177_SNP [dm6]	C	T	2.653e^-5	0.06	DOWNSTREAM CR44417 INTRON Mapmodulin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	13355658	X_13355658_SNP [dm3] X_13461625_SNP [dm6]	G	A	2.657e^-5	0.06	INTRON Neto
X	16538517	X_16538517_SNP [dm3] X_16644484_SNP [dm6]	A	T	2.658e^-5	0.06	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	20769784	X_20769784_SNP [dm3] X_20898757_SNP [dm6]	A	G	2.658e^-5	0.06	INTRON shakB
2L	12814646	2L_12814646_SNP [dm3] 2L_12814646_SNP [dm6]	T	G	2.671e^-5	0.06	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17792936	2L_17792936_SNP [dm3] 2L_17792936_SNP [dm6]	A	G	2.681e^-5	0.061	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
3L	1961343	3L_1961343_SNP [dm3] 3L_1961343_SNP [dm6]	T	C	2.685e^-5	0.061	SYNONYMOUS_CODING mv
3R	7815107	3R_7815107_SNP [dm3] 3R_11989385_SNP [dm6]	G	C	2.696e^-5	0.061	NON_SYNONYMOUS_CODING mfas INTRON mfas
2L	4500152	2L_4500152_SNP [dm3] 2L_4500152_SNP [dm6]	C	T	2.698e^-5	0.061	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7507815	X_7507815_SNP [dm3] X_7613782_SNP [dm6]	C	A	2.698e^-5	0.061	INTRON ct
2L	16370782	2L_16370782_SNP [dm3] 2L_16370782_SNP [dm6]	T	C	2.713e^-5	0.061	INTERGENIC
3L	5846998	3L_5846998_SNP [dm3] 3L_5853898_SNP [dm6]	G	A	2.737e^-5	0.061	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22656430	3R_22656430_SNP [dm3] 3R_26830708_SNP [dm6]	T	G	2.742e^-5	0.061	INTRON Tl
2R	11178822	2R_11178822_SNP [dm3] 2R_15291317_SNP [dm6]	G	A	2.747e^-5	0.061	UPSTREAM Trpm INTRON Trpm
2L	5304893	2L_5304893_SNP [dm3] 2L_5304893_SNP [dm6]	T	A	2.752e^-5	0.061	UPSTREAM vri INTRON vri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11178823	2R_11178823_SNP [dm3] 2R_15291318_SNP [dm6]	A	T	2.754e^-5	0.061	UPSTREAM Trpm INTRON Trpm
2L	7216849	2L_7216849_SNP [dm3] 2L_7216849_SNP [dm6]	A	T	2.756e^-5	0.061	INTRON CG13784
2R	8768503	2R_8768503_SNP [dm3] 2R_12880998_SNP [dm6]	G	T	2.777e^-5	0.062	NON_SYNONYMOUS_CODING Aats-asp UPSTREAM Nmda1 DOWNSTREAM CR45141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6966217	2R_6966217_INS [dm3] 2R_11078712_INS [dm6]	A	AAACA	2.790e^-5	0.062	INTRON luna
2L	10978172	2L_10978172_SNP [dm3] 2L_10978172_SNP [dm6]	C	T	2.817e^-5	0.063	SYNONYMOUS_CODING SCAR
X	13881223	X_13881223_SNP [dm3] X_13987190_SNP [dm6]	A	C	2.819e^-5	0.063	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13881233	X_13881233_SNP [dm3] X_13987200_SNP [dm6]	T	A	2.819e^-5	0.063	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1250129	2L_1250129_SNP [dm3] 2L_1250129_SNP [dm6]	C	T	2.831e^-5	0.063	INTERGENIC
2R	12059357	2R_12059357_SNP [dm3] 2R_16171852_SNP [dm6]	G	A	2.843e^-5	0.063	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14545257	2R_14545257_SNP [dm3] 2R_18657752_SNP [dm6]	C	T	2.845e^-5	0.063	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2L	2601883	2L_2601883_SNP [dm3] 2L_2601883_SNP [dm6]	C	T	2.875e^-5	0.063	UPSTREAM CR44789 INTERGENIC
3R	1969722	3R_1969722_SNP [dm3] 3R_6144000_SNP [dm6]	T	C	2.879e^-5	0.063	INTERGENIC
3L	4592882	3L_4592882_SNP [dm3] 3L_4592882_SNP [dm6]	C	T	2.880e^-5	0.063	UTR_3_PRIME Src64B DOWNSTREAM Src64B & 1 other
2L	2531569	2L_2531569_SNP [dm3] 2L_2531569_SNP [dm6]	T	A	2.880e^-5	0.063	INTERGENIC
2L	10685614	2L_10685614_DEL [dm3] 2L_10685614_DEL [dm6]	TTTTACTAAGCAAAATA...	C	2.880e^-5	0.063	DOWNSTREAM CG7296 INTERGENIC
2R	3465837	2R_3465837_SNP [dm3] 2R_7578332_SNP [dm6]	G	A	2.884e^-5	0.063	SYNONYMOUS_CODING Vps13 DOWNSTREAM CR45130
2R	13945619	2R_13945619_SNP [dm3] 2R_18058114_SNP [dm6]	G	A	2.894e^-5	0.063	EXON CR45314
2L	5734352	2L_5734352_SNP [dm3] 2L_5734352_SNP [dm6]	G	C	2.913e^-5	0.063	INTRON CG11030 & 1 other
X	1810299	X_1810299_SNP [dm3] X_1916266_SNP [dm6]	C	T	2.916e^-5	0.063	UTR_3_PRIME Rbcn-3B DOWNSTREAM Rbcn-3B INTRON mip130
2R	8126923	2R_8126923_SNP [dm3] 2R_12239418_SNP [dm6]	A	T	2.918e^-5	0.063	UPSTREAM CG13170 INTERGENIC
3R	1121849	3R_1121849_SNP [dm3] 3R_5296127_SNP [dm6]	T	A	2.918e^-5	0.063	INTRON mtd
3R	1155506	3R_1155506_SNP [dm3] 3R_5329784_SNP [dm6]	T	A	2.918e^-5	0.063	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1174186	3R_1174186_SNP [dm3] 3R_5348464_SNP [dm6]	G	C	2.918e^-5	0.063	INTRON mtd
3R	1184454	3R_1184454_SNP [dm3] 3R_5358732_SNP [dm6]	G	T	2.918e^-5	0.063	UPSTREAM Prosbeta7 DOWNSTREAM Cerk INTERGENIC	TF binding site mE1_TFBS_cnc
2R	17308194	2R_17308194_SNP [dm3] 2R_21420689_SNP [dm6]	C	T	2.926e^-5	0.064	INTRON Sdc
2L	8321964	2L_8321964_SNP [dm3] 2L_8321964_SNP [dm6]	C	G	2.940e^-5	0.064	UTR_3_PRIME CG7781 DOWNSTREAM CG7787
3L	2521933	3L_2521933_DEL [dm3] 3L_2521933_DEL [dm6]	TATACCGATATG...	C	2.953e^-5	0.064	INTRON Spn
3L	2521962	3L_2521962_SNP [dm3] 3L_2521962_SNP [dm6]	A	T	2.953e^-5	0.064	INTRON Spn
X	14871059	X_14871059_SNP [dm3] X_14977026_SNP [dm6]	C	G	2.977e^-5	0.064	INTRON eag
X	14874830	X_14874830_SNP [dm3] X_14980797_SNP [dm6]	G	A	2.977e^-5	0.064	INTRON eag
2L	940221	2L_940221_SNP [dm3] 2L_940221_SNP [dm6]	G	T	2.992e^-5	0.065	INTRON CG4341
2L	5927632	2L_5927632_SNP [dm3] 2L_5927632_SNP [dm6]	A	T	3.000e^-5	0.065	INTRON dsf
3L	3460796	3L_3460796_SNP [dm3] 3L_3460796_SNP [dm6]	G	A	3.036e^-5	0.065	START_GAINED eIF5B UTR_5_PRIME eIF5B UPSTREAM armi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	14873801	X_14873801_SNP [dm3] X_14979768_SNP [dm6]	C	T	3.039e^-5	0.065	INTRON eag
X	14873807	X_14873807_SNP [dm3] X_14979774_SNP [dm6]	A	C	3.039e^-5	0.065	INTRON eag
X	2647401	X_2647401_INS [dm3] X_2753368_INS [dm6]	C	CC	3.040e^-5	0.065	INTRON kirre
X	2647415	X_2647415_SNP [dm3] X_2753382_SNP [dm6]	T	G	3.040e^-5	0.065	INTRON kirre
X	2647422	X_2647422_SNP [dm3] X_2753389_SNP [dm6]	A	C	3.040e^-5	0.065	INTRON kirre
X	2647424	X_2647424_SNP [dm3] X_2753391_SNP [dm6]	G	A	3.040e^-5	0.065	INTRON kirre
X	2647459	X_2647459_SNP [dm3] X_2753426_SNP [dm6]	T	C	3.040e^-5	0.065	INTRON kirre
X	2647618	X_2647618_SNP [dm3] X_2753585_SNP [dm6]	G	C	3.040e^-5	0.065	INTRON kirre
X	2647654	X_2647654_SNP [dm3] X_2753621_SNP [dm6]	C	T	3.040e^-5	0.065	INTRON kirre
X	2647676	X_2647676_SNP [dm3] X_2753643_SNP [dm6]	T	G	3.040e^-5	0.065	INTRON kirre
X	2648039	X_2648039_SNP [dm3] X_2754006_SNP [dm6]	C	T	3.040e^-5	0.065	INTRON kirre
2L	1612471	2L_1612471_INS [dm3] 2L_1612471_INS [dm6]	A	ATT	3.049e^-5	0.065	UTR_3_PRIME CG14352 & 1 other DOWNSTREAM RFeSP
2L	9963099	2L_9963099_SNP [dm3] 2L_9963099_SNP [dm6]	C	T	3.050e^-5	0.065	SYNONYMOUS_CODING CG5850 DOWNSTREAM CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
4	726081	4_726081_DEL [dm3] 4_705455_DEL [dm6]	TAAAAAG	A	3.059e^-5	0.065	INTRON ey	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	803540	2L_803540_SNP [dm3] 2L_803540_SNP [dm6]	G	A	3.134e^-5	0.066	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2639340	X_2639340_SNP [dm3] X_2745307_SNP [dm6]	G	T	3.140e^-5	0.066	INTRON kirre
3L	11487359	3L_11487359_SNP [dm3] 3L_11494259_SNP [dm6]	C	A	3.143e^-5	0.066	SYNONYMOUS_CODING chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1026645	2L_1026645_SNP [dm3] 2L_1026645_SNP [dm6]	G	C	3.144e^-5	0.066	SYNONYMOUS_CODING CG4375 INTRON IA-2
X	5682696	X_5682696_SNP [dm3] X_5788663_SNP [dm6]	C	T	3.149e^-5	0.066	UTR_3_PRIME CG42699 UPSTREAM CG15767
2R	13780617	2R_13780617_SNP [dm3] 2R_17893112_SNP [dm6]	C	A	3.157e^-5	0.066	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5957731	2L_5957731_DEL [dm3] 2L_5957731_DEL [dm6]	ACCGATATGA	A	3.177e^-5	0.067	UPSTREAM CG13998 DOWNSTREAM Vm26Ac & 1 other INTERGENIC
3L	1247461	3L_1247461_SNP [dm3] 3L_1247461_SNP [dm6]	C	T	3.182e^-5	0.067	NON_SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17517363	2R_17517363_SNP [dm3] 2R_21629858_SNP [dm6]	T	C	3.196e^-5	0.067	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1229549	2L_1229549_SNP [dm3] 2L_1229549_SNP [dm6]	A	C	3.205e^-5	0.067	UTR_3_PRIME CG42329
X	1165472	X_1165472_SNP [dm3] X_1271439_SNP [dm6]	A	G	3.207e^-5	0.067	INTRON Atf3	TF binding site BDTNP1_TFBS_dl
X	5845272	X_5845272_SNP [dm3] X_5951239_SNP [dm6]	G	C	3.217e^-5	0.067	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9889211	2R_9889211_SNP [dm3] 2R_14001706_SNP [dm6]	G	T	3.237e^-5	0.068	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22059244	2L_22059244_SNP [dm3] 2L_22059244_SNP [dm6]	A	T	3.256e^-5	0.068	INTERGENIC	transposable element FlyBase
2L	1969669	2L_1969669_DEL [dm3] 2L_1969669_DEL [dm6]	TCTTATT	T	3.259e^-5	0.068	INTRON erm	TF binding site BDTNP1_TFBS_dl
3R	175204	3R_175204_SNP [dm3] 3R_4349482_SNP [dm6]	T	A	3.268e^-5	0.068	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18143041	2R_18143041_SNP [dm3] 2R_22255536_SNP [dm6]	T	G	3.276e^-5	0.068	INTRON dve	TF binding site mE1_TFBS_sens
3L	3792015	3L_3792015_SNP [dm3] 3L_3792015_SNP [dm6]	T	A	3.282e^-5	0.068	DOWNSTREAM CG32266 INTRON CG32264
3L	3792026	3L_3792026_SNP [dm3] 3L_3792026_SNP [dm6]	A	T	3.282e^-5	0.068	DOWNSTREAM CG32266 INTRON CG32264
2L	9082368	2L_9082368_SNP [dm3] 2L_9082368_SNP [dm6]	T	G	3.289e^-5	0.068	INTERGENIC
2L	9467947	2L_9467947_SNP [dm3] 2L_9467947_SNP [dm6]	G	A	3.293e^-5	0.068	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16230405	2R_16230405_SNP [dm3] 2R_20342900_SNP [dm6]	C	T	3.307e^-5	0.068	UPSTREAM CG13870 DOWNSTREAM CG16739 INTERGENIC
2R	13945677	2R_13945677_SNP [dm3] 2R_18058172_SNP [dm6]	G	C	3.307e^-5	0.068	EXON CR45314
2R	19200635	2R_19200635_SNP [dm3] 2R_23313112_SNP [dm6]	A	T	3.313e^-5	0.068	NON_SYNONYMOUS_CODING HP1Lcsd	TF binding site mE1_TFBS_cad
2R	13953250	2R_13953250_SNP [dm3] 2R_18065745_SNP [dm6]	C	T	3.320e^-5	0.068	INTRON CG34386
2R	13953258	2R_13953258_SNP [dm3] 2R_18065753_SNP [dm6]	C	T	3.320e^-5	0.068	INTRON CG34386
2L	14850697	2L_14850697_SNP [dm3] 2L_14850697_SNP [dm6]	T	C	3.362e^-5	0.069	INTRON CG15279
2R	7399854	2R_7399854_SNP [dm3] 2R_11512349_SNP [dm6]	C	T	3.373e^-5	0.069	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3115666	2L_3115666_SNP [dm3] 2L_3115666_SNP [dm6]	C	G	3.381e^-5	0.069	INTRON toc
2L	14822650	2L_14822650_SNP [dm3] 2L_14822650_SNP [dm6]	T	C	3.405e^-5	0.07	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14736104	3L_14736104_SNP [dm3] 3L_14743004_SNP [dm6]	C	T	3.414e^-5	0.07	INTRON ome	TF binding site BDTNP1_TFBS_z
3L	2492699	3L_2492699_SNP [dm3] 3L_2492699_SNP [dm6]	A	G	3.415e^-5	0.07	DOWNSTREAM CG1146 INTRON CG45186
2R	19455368	2R_19455368_SNP [dm3] 2R_23567845_SNP [dm6]	G	T	3.430e^-5	0.07	UPSTREAM apt INTRON apt
2R	1406219	2R_1406219_SNP [dm3] 2R_5518714_SNP [dm6]	C	T	3.430e^-5	0.07	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
X	5552224	X_5552224_SNP [dm3] X_5658191_SNP [dm6]	A	G	3.433e^-5	0.07	INTRON CG42265	TF binding site mE1_TFBS_chinmo
2L	3996052	2L_3996052_SNP [dm3] 2L_3996052_SNP [dm6]	G	A	3.445e^-5	0.07	INTERGENIC
3R	18970715	3R_18970715_SNP [dm3] 3R_23144993_SNP [dm6]	C	T	3.463e^-5	0.07	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	5072499	2L_5072499_DEL [dm3] 2L_5072499_DEL [dm6]	GCTTTG	G	3.482e^-5	0.071	UTR_3_PRIME pgant5 DOWNSTREAM RpL37A
X	2715510	X_2715510_SNP [dm3] X_2821477_SNP [dm6]	A	C	3.510e^-5	0.071	INTRON kirre
2L	5590129	2L_5590129_DEL [dm3] 2L_5590129_DEL [dm6]	AA	A	3.531e^-5	0.071	INTERGENIC
X	2648091	X_2648091_SNP [dm3] X_2754058_SNP [dm6]	G	A	3.553e^-5	0.072	INTRON kirre
2L	14713466	2L_14713466_SNP [dm3] 2L_14713466_SNP [dm6]	A	G	3.571e^-5	0.072	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
2R	17473583	2R_17473583_SNP [dm3] 2R_21586078_SNP [dm6]	C	G	3.605e^-5	0.073	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5850011	X_5850011_SNP [dm3] X_5955978_SNP [dm6]	C	A	3.606e^-5	0.073	INTRON CG6067
3R	389796	3R_389796_SNP [dm3] 3R_4564074_SNP [dm6]	T	C	3.613e^-5	0.073	INTERGENIC
3L	16019689	3L_16019689_SNP [dm3] 3L_16026589_SNP [dm6]	G	A	3.620e^-5	0.073	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14434210	2R_14434210_SNP [dm3] 2R_18546705_SNP [dm6]	A	G	3.625e^-5	0.073	INTRON Rgk2
2R	20236430	2R_20236430_SNP [dm3] 2R_24348907_SNP [dm6]	C	T	3.625e^-5	0.073	UTR_3_PRIME bs INTRON bs	TF binding site mE1_TFBS_chinmo
2R	20236442	2R_20236442_SNP [dm3] 2R_24348919_SNP [dm6]	G	T	3.625e^-5	0.073	UTR_3_PRIME bs INTRON bs	TF binding site mE1_TFBS_chinmo
2R	20236450	2R_20236450_SNP [dm3] 2R_24348927_SNP [dm6]	C	A	3.625e^-5	0.073	UTR_3_PRIME bs INTRON bs	TF binding site mE1_TFBS_chinmo
3L	4688462	3L_4688462_SNP [dm3] 3L_4688462_SNP [dm6]	A	G	3.653e^-5	0.073	SYNONYMOUS_CODING CG7514 DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad
2R	7072874	2R_7072874_SNP [dm3] 2R_11185369_SNP [dm6]	G	T	3.671e^-5	0.073	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	17195015	2L_17195015_SNP [dm3] 2L_17195015_SNP [dm6]	T	C	3.682e^-5	0.073	INTRON beat-IIIc
2L	3213096	2L_3213096_INS [dm3] 2L_3213096_INS [dm6]	T	TCT	3.683e^-5	0.073	INTERGENIC
2L	17195002	2L_17195002_SNP [dm3] 2L_17195002_SNP [dm6]	A	G	3.691e^-5	0.074	INTRON beat-IIIc
2L	3435487	2L_3435487_SNP [dm3] 2L_3435487_SNP [dm6]	C	G	3.698e^-5	0.074	INTERGENIC
3L	8645179	3L_8645179_SNP [dm3] 3L_8652079_SNP [dm6]	C	A	3.706e^-5	0.074	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12626329	2R_12626329_SNP [dm3] 2R_16738824_SNP [dm6]	T	C	3.706e^-5	0.074	UPSTREAM CG43104 DOWNSTREAM CR44464 INTERGENIC
X	6571232	X_6571232_SNP [dm3] X_6677199_SNP [dm6]	A	G	3.710e^-5	0.074	DOWNSTREAM CG3192 & 1 other INTERGENIC
3L	17450158	3L_17450158_SNP [dm3] 3L_17457058_SNP [dm6]	A	T	3.715e^-5	0.074	UTR_3_PRIME CG18265
2R	20184413	2R_20184413_SNP [dm3] 2R_24296890_SNP [dm6]	G	T	3.733e^-5	0.074	NON_SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7268108	2R_7268108_SNP [dm3] 2R_11380603_SNP [dm6]	A	G	3.733e^-5	0.074	UTR_3_PRIME Sod3 DOWNSTREAM Sod3
3L	4697143	3L_4697143_SNP [dm3] 3L_4697143_SNP [dm6]	A	C	3.733e^-5	0.074	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5361413	3L_5361413_SNP [dm3] 3L_5368313_SNP [dm6]	G	A	3.808e^-5	0.075	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3L	5361645	3L_5361645_SNP [dm3] 3L_5368545_SNP [dm6]	A	T	3.817e^-5	0.075	UPSTREAM CG10635 & 1 other INTERGENIC
2L	5105357	2L_5105357_SNP [dm3] 2L_5105357_SNP [dm6]	C	A	3.819e^-5	0.075	INTRON Msp300
2L	4556128	2L_4556128_SNP [dm3] 2L_4556128_SNP [dm6]	A	G	3.835e^-5	0.075	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7393376	3L_7393376_SNP [dm3] 3L_7400276_SNP [dm6]	T	G	3.859e^-5	0.076	NON_SYNONYMOUS_CODING CG18417 DOWNSTREAM CG8562
X	11772056	X_11772056_SNP [dm3] X_11878023_SNP [dm6]	T	A	3.870e^-5	0.076	UTR_3_PRIME CG10353 UPSTREAM CG10352
2R	13388396	2R_13388396_SNP [dm3] 2R_17500891_SNP [dm6]	T	A	3.876e^-5	0.076	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17095204	2R_17095204_SNP [dm3] 2R_21207699_SNP [dm6]	T	A	3.877e^-5	0.076	INTRON CG44245 & 1 other
X	12729119	X_12729119_SNP [dm3] X_12835086_SNP [dm6]	T	A	3.878e^-5	0.076	INTRON Pde9
2L	1455521	2L_1455521_SNP [dm3] 2L_1455521_SNP [dm6]	G	T	3.878e^-5	0.076	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2352126	3L_2352126_SNP [dm3] 3L_2352126_SNP [dm6]	C	G	3.880e^-5	0.076	INTERGENIC
3R	20027300	3R_20027300_SNP [dm3] 3R_24201578_SNP [dm6]	T	C	3.888e^-5	0.076	UPSTREAM twin INTRON twin
3R	1969721	3R_1969721_SNP [dm3] 3R_6143999_SNP [dm6]	T	G	3.889e^-5	0.076	INTERGENIC
2L	14822647	2L_14822647_SNP [dm3] 2L_14822647_SNP [dm6]	A	C	3.927e^-5	0.076	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13603194	2R_13603194_SNP [dm3] 2R_17715689_SNP [dm6]	G	T	3.952e^-5	0.077	INTRON CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_Trl
2R	12627177	2R_12627177_SNP [dm3] 2R_16739672_SNP [dm6]	C	A	3.953e^-5	0.077	INTERGENIC
3L	4950791	3L_4950791_SNP [dm3] 3L_4950791_SNP [dm6]	G	A	3.968e^-5	0.077	INTRON Con	TF binding site mE1_TFBS_chinmo
3L	5684991	3L_5684991_INS [dm3] 3L_5691891_INS [dm6]	A	AACACACACAC...	3.987e^-5	0.077	INTRON sif	TF binding site mE1_TFBS_cad
2L	9082375	2L_9082375_SNP [dm3] 2L_9082375_SNP [dm6]	T	A	4.011e^-5	0.078	INTERGENIC
2L	16401450	2L_16401450_SNP [dm3] 2L_16401450_SNP [dm6]	A	G	4.024e^-5	0.078	INTRON CG5888
3R	1673661	3R_1673661_SNP [dm3] 3R_5847939_SNP [dm6]	C	T	4.042e^-5	0.078	SYNONYMOUS_CODING CG14676	TF binding site mE1_TFBS_cad
X	6632550	X_6632550_SNP [dm3] X_6738517_SNP [dm6]	G	C	4.048e^-5	0.078	INTRON CG3168
2L	1708711	2L_1708711_SNP [dm3] 2L_1708711_SNP [dm6]	G	A	4.049e^-5	0.078	INTRON CG17660 EXON CR44976	TF binding site mE1_TFBS_cad
2L	2293376	2L_2293376_DEL [dm3] 2L_2293376_DEL [dm6]	GG	G	4.056e^-5	0.078	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13881307	X_13881307_SNP [dm3] X_13987274_SNP [dm6]	T	A	4.056e^-5	0.078	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2352116	3L_2352116_SNP [dm3] 3L_2352116_SNP [dm6]	T	C	4.067e^-5	0.078	INTERGENIC
3L	10118341	3L_10118341_SNP [dm3] 3L_10125241_SNP [dm6]	T	G	4.073e^-5	0.078	INTRON dpr6
X	20573918	X_20573918_DEL [dm3] X_20702891_DEL [dm6]	ACTGAA	A	4.094e^-5	0.079	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14939051	2R_14939051_SNP [dm3] 2R_19051546_SNP [dm6]	G	C	4.098e^-5	0.079	INTERGENIC
3L	4083049	3L_4083049_SNP [dm3] 3L_4083049_SNP [dm6]	T	G	4.114e^-5	0.079	INTRON Gad1
2L	1240949	2L_1240949_SNP [dm3] 2L_1240949_SNP [dm6]	A	G	4.120e^-5	0.079	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	4982750	2L_4982750_SNP [dm3] 2L_4982750_SNP [dm6]	A	G	4.125e^-5	0.079	INTRON CG34126
X	13881258	X_13881258_SNP [dm3] X_13987225_SNP [dm6]	A	G	4.128e^-5	0.079	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4621001	2L_4621001_SNP [dm3] 2L_4621001_SNP [dm6]	G	C	4.150e^-5	0.079	DOWNSTREAM CR44609 INTERGENIC
3L	3648623	3L_3648623_SNP [dm3] 3L_3648623_SNP [dm6]	T	G	4.169e^-5	0.079	INTRON dar1
2L	4960401	2L_4960401_SNP [dm3] 2L_4960401_SNP [dm6]	G	T	4.190e^-5	0.08	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8388152	2R_8388152_SNP [dm3] 2R_12500647_SNP [dm6]	T	G	4.196e^-5	0.08	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7745579	3R_7745579_SNP [dm3] 3R_11919857_SNP [dm6]	C	A	4.203e^-5	0.08	INTRON Cad87A
2L	1229560	2L_1229560_SNP [dm3] 2L_1229560_SNP [dm6]	C	A	4.206e^-5	0.08	UTR_3_PRIME CG42329
2R	9971949	2R_9971949_SNP [dm3] 2R_14084444_SNP [dm6]	A	C	4.207e^-5	0.08	INTRON Prosap	TF binding site mE1_TFBS_bab1
4	831859	4_831859_INS [dm3] 4_811233_INS [dm6]	G	GGCAAATTG	4.227e^-5	0.08	INTRON Sox102F	transposable element FlyBase
X	5907260	X_5907260_SNP [dm3] X_6013227_SNP [dm6]	C	T	4.229e^-5	0.08	UPSTREAM CR44499 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	2648079	X_2648079_SNP [dm3] X_2754046_SNP [dm6]	A	G	4.249e^-5	0.08	INTRON kirre
2L	18510828	2L_18510828_SNP [dm3] 2L_18510828_SNP [dm6]	A	G	4.254e^-5	0.08	INTRON CG10178
2L	18513761	2L_18513761_INS [dm3] 2L_18513761_INS [dm6]	A	AGGGATGTATAAC...	4.259e^-5	0.08	DOWNSTREAM CG10178 INTERGENIC
2L	12896396	2L_12896396_SNP [dm3] 2L_12896396_SNP [dm6]	C	A	4.264e^-5	0.08	INTERGENIC
2L	5763734	2L_5763734_SNP [dm3] 2L_5763734_SNP [dm6]	C	G	4.264e^-5	0.08	NON_SYNONYMOUS_CODING obst-E INTRON obst-E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12167089	X_12167089_SNP [dm3] X_12273056_SNP [dm6]	G	T	4.267e^-5	0.08	INTRON Ten-a
3L	3791984	3L_3791984_SNP [dm3] 3L_3791984_SNP [dm6]	G	C	4.275e^-5	0.08	DOWNSTREAM CG32266 INTRON CG32264
2L	16372203	2L_16372203_SNP [dm3] 2L_16372203_SNP [dm6]	T	A	4.299e^-5	0.081	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4263888	2L_4263888_SNP [dm3] 2L_4263888_SNP [dm6]	G	C	4.310e^-5	0.081	INTERGENIC
2R	6652078	2R_6652078_SNP [dm3] 2R_10764573_SNP [dm6]	T	C	4.323e^-5	0.081	INTRON CG33144	TF binding site mE1_TFBS_kn
2L	2801323	2L_2801323_INS [dm3] 2L_2801323_INS [dm6]	CT	GAG	4.359e^-5	0.081	INTERGENIC	TF binding site mE1_TFBS_sens
2L	3212877	2L_3212877_SNP [dm3] 2L_3212877_SNP [dm6]	C	G	4.361e^-5	0.081	INTERGENIC
2L	9082215	2L_9082215_SNP [dm3] 2L_9082215_SNP [dm6]	T	A	4.364e^-5	0.081	INTERGENIC
2L	18821667	2L_18821667_SNP [dm3] 2L_18821667_SNP [dm6]	A	G	4.390e^-5	0.082	INTRON CG17324
2L	12910609	2L_12910609_SNP [dm3] 2L_12910609_SNP [dm6]	C	T	4.394e^-5	0.082	INTERGENIC
3L	13959521	3L_13959521_SNP [dm3] 3L_13966421_SNP [dm6]	C	T	4.395e^-5	0.082	UTR_5_PRIME Nxf3 INTRON ssp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

Microbiota_OTU004 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results