DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.944e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2019 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	5979369	2R_5979369_SNP [dm3] 2R_10091864_SNP [dm6]	T	C	5.185e^-7	0.259	SYNONYMOUS_CODING CG2269 INTRON CG2269
2R	5979385	2R_5979385_SNP [dm3] 2R_10091880_SNP [dm6]	A	G	5.185e^-7	0.259	NON_SYNONYMOUS_CODING CG2269 INTRON CG2269
3R	25045750	3R_25045750_DEL [dm3] 3R_29220028_DEL [dm6]	GTG	AA	5.585e^-7	0.259	UPSTREAM Ef1gamma DOWNSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	5979670	2R_5979670_SNP [dm3] 2R_10092165_SNP [dm6]	C	T	6.111e^-7	0.259	INTRON CG2269
2R	12380058	2R_12380058_SNP [dm3] 2R_16492553_SNP [dm6]	C	T	7.393e^-7	0.259	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5979659	2R_5979659_SNP [dm3] 2R_10092154_SNP [dm6]	G	A	9.733e^-7	0.259	INTRON CG2269
2L	4248350	2L_4248350_SNP [dm3] 2L_4248350_SNP [dm6]	G	T	1.079e^-6	0.259	INTRON CR44059
3R	20440363	3R_20440363_SNP [dm3] 3R_24614641_SNP [dm6]	G	T	1.112e^-6	0.259	INTRON mld
X	1606967	X_1606967_DEL [dm3] X_1712934_DEL [dm6]	TCT	GG	1.291e^-6	0.267	INTERGENIC
2L	12502753	2L_12502753_SNP [dm3] 2L_12502753_SNP [dm6]	G	A	1.501e^-6	0.279	INTRON bun
2R	12380049	2R_12380049_SNP [dm3] 2R_16492544_SNP [dm6]	C	A	2.692e^-6	0.336	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3335838	3L_3335838_SNP [dm3] 3L_3335838_SNP [dm6]	C	T	2.763e^-6	0.336	UPSTREAM CG14969 & 1 other DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13783484	3L_13783484_SNP [dm3] 3L_13790384_SNP [dm6]	A	G	2.776e^-6	0.336	INTRON bru-3
3R	25469172	3R_25469172_SNP [dm3] 3R_29643450_SNP [dm6]	A	C	3.720e^-6	0.336	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2R	12378211	2R_12378211_SNP [dm3] 2R_16490706_SNP [dm6]	T	C	3.918e^-6	0.336	UPSTREAM S-Lap8 INTERGENIC
X	1607716	X_1607716_SNP [dm3] X_1713683_SNP [dm6]	G	C	4.076e^-6	0.336	INTERGENIC
2R	1381457	2R_1381457_SNP [dm3] 2R_5493952_SNP [dm6]	T	G	4.091e^-6	0.336	NON_SYNONYMOUS_CODING CG30440
2R	12380079	2R_12380079_SNP [dm3] 2R_16492574_SNP [dm6]	A	G	4.163e^-6	0.336	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22291347	3R_22291347_SNP [dm3] 3R_26465625_SNP [dm6]	A	G	4.656e^-6	0.336	START_GAINED CG5455 UTR_5_PRIME CG5455 INTRON CG5455
3L	20175380	3L_20175380_SNP [dm3] 3L_20182280_SNP [dm6]	T	G	4.745e^-6	0.336	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3R	25460457	3R_25460457_SNP [dm3] 3R_29634735_SNP [dm6]	C	G	5.344e^-6	0.336	INTRON Dop1R2
2R	12379906	2R_12379906_SNP [dm3] 2R_16492401_SNP [dm6]	C	T	5.497e^-6	0.336	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12380853	2R_12380853_SNP [dm3] 2R_16493348_SNP [dm6]	C	G	5.497e^-6	0.336	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12381105	2R_12381105_INS [dm3] 2R_16493600_INS [dm6]	T	TTT	5.497e^-6	0.336	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12381155	2R_12381155_SNP [dm3] 2R_16493650_SNP [dm6]	C	A	5.497e^-6	0.336	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9656852	3R_9656852_SNP [dm3] 3R_13831130_SNP [dm6]	G	A	5.719e^-6	0.336	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9656854	3R_9656854_SNP [dm3] 3R_13831132_SNP [dm6]	A	G	5.719e^-6	0.336	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1607708	X_1607708_SNP [dm3] X_1713675_SNP [dm6]	C	A	5.738e^-6	0.336	INTERGENIC
2L	4248403	2L_4248403_INS [dm3] 2L_4248403_INS [dm6]	G	GGG	5.968e^-6	0.336	INTRON CR44059
2L	8166521	2L_8166521_SNP [dm3] 2L_8166521_SNP [dm6]	A	T	6.148e^-6	0.336	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	5978419	2R_5978419_INS [dm3] 2R_10090914_INS [dm6]	C	CC	6.239e^-6	0.336	INTRON CG2269
2R	5977950	2R_5977950_SNP [dm3] 2R_10090445_SNP [dm6]	T	G	6.330e^-6	0.336	INTRON CG2269
2R	5978006	2R_5978006_SNP [dm3] 2R_10090501_SNP [dm6]	T	A	6.330e^-6	0.336	INTRON CG2269
2R	5978397	2R_5978397_SNP [dm3] 2R_10090892_SNP [dm6]	T	C	6.330e^-6	0.336	INTRON CG2269
3R	25460307	3R_25460307_SNP [dm3] 3R_29634585_SNP [dm6]	T	C	6.480e^-6	0.336	INTRON Dop1R2
2L	17936393	2L_17936393_SNP [dm3] 2L_17936393_SNP [dm6]	T	G	6.504e^-6	0.336	INTERGENIC
X	1606960	X_1606960_SNP [dm3] X_1712927_SNP [dm6]	T	C	7.100e^-6	0.357	INTERGENIC
2L	17936426	2L_17936426_SNP [dm3] 2L_17936426_SNP [dm6]	T	C	7.793e^-6	0.376	INTERGENIC
2R	17315862	2R_17315862_SNP [dm3] 2R_21428357_SNP [dm6]	C	G	7.882e^-6	0.376	INTRON Sdc
2L	18291841	2L_18291841_SNP [dm3] 2L_18291841_SNP [dm6]	C	T	8.090e^-6	0.376	UPSTREAM CR44696 & 2 others EXON CR44693
X	1611956	X_1611956_SNP [dm3] X_1717923_SNP [dm6]	T	C	9.240e^-6	0.419	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1606963	X_1606963_SNP [dm3] X_1712930_SNP [dm6]	C	A	9.542e^-6	0.423	INTERGENIC
2R	18748484	2R_18748484_SNP [dm3] 2R_22860961_SNP [dm6]	T	A	1.015e^-5	0.428	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1605934	X_1605934_SNP [dm3] X_1711901_SNP [dm6]	C	G	1.048e^-5	0.428	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13757149	3R_13757149_INS [dm3] 3R_17931427_INS [dm6]	A	AGTA	1.066e^-5	0.428	UPSTREAM cpo INTRON cpo
2L	17936412	2L_17936412_SNP [dm3] 2L_17936412_SNP [dm6]	A	G	1.080e^-5	0.428	INTERGENIC
2L	17936427	2L_17936427_SNP [dm3] 2L_17936427_SNP [dm6]	G	T	1.080e^-5	0.428	INTERGENIC
2R	5979705	2R_5979705_SNP [dm3] 2R_10092200_SNP [dm6]	A	T	1.127e^-5	0.43	INTRON CG2269
X	1605040	X_1605040_SNP [dm3] X_1711007_SNP [dm6]	C	A	1.132e^-5	0.43	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	23395146	3L_23395146_INS [dm3] 3L_23402046_INS [dm6]	A	CGGCAAAAGATGCAATTGAA...	1.195e^-5	0.445	INTERGENIC
2L	17936436	2L_17936436_SNP [dm3] 2L_17936436_SNP [dm6]	C	T	1.260e^-5	0.46	INTERGENIC
X	1605041	X_1605041_SNP [dm3] X_1711008_SNP [dm6]	A	G	1.315e^-5	0.468	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18103113	3L_18103113_SNP [dm3] 3L_18110013_SNP [dm6]	G	A	1.339e^-5	0.468	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9656859	3R_9656859_DEL [dm3] 3R_13831137_DEL [dm6]	TGTAT	T	1.362e^-5	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25046166	3R_25046166_SNP [dm3] 3R_29220444_SNP [dm6]	C	T	1.387e^-5	0.468	SYNONYMOUS_CODING Ef1gamma DOWNSTREAM CR31044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	18298775	2L_18298775_SNP [dm3] 2L_18298775_SNP [dm6]	T	G	1.413e^-5	0.468	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14930352	2L_14930352_SNP [dm3] 2L_14930352_SNP [dm6]	G	C	1.434e^-5	0.468	UTR_3_PRIME CG3491 INTRON CG42313
3R	21568715	3R_21568715_SNP [dm3] 3R_25742993_SNP [dm6]	A	C	1.465e^-5	0.47	INTRON LpR1
X	1607705	X_1607705_SNP [dm3] X_1713672_SNP [dm6]	A	G	1.490e^-5	0.47	INTERGENIC
3L	20088124	3L_20088124_SNP [dm3] 3L_20095024_SNP [dm6]	C	A	1.600e^-5	0.479	INTERGENIC
3R	10043131	3R_10043131_SNP [dm3] 3R_14217409_SNP [dm6]	A	G	1.610e^-5	0.479	DOWNSTREAM CG31326 INTRON CG9649
2L	17936539	2L_17936539_INS [dm3] 2L_17936539_INS [dm6]	A	GCTGTCGGCCTGCTG...	1.654e^-5	0.479	INTERGENIC
2R	13138839	2R_13138839_SNP [dm3] 2R_17251334_SNP [dm6]	G	A	1.660e^-5	0.479	INTRON mbl
2L	17936374	2L_17936374_SNP [dm3] 2L_17936374_SNP [dm6]	A	G	1.666e^-5	0.479	INTERGENIC
X	1605933	X_1605933_SNP [dm3] X_1711900_SNP [dm6]	A	G	1.682e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5418719	X_5418719_SNP [dm3] X_5524686_SNP [dm6]	G	T	1.698e^-5	0.479	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	14176198	2R_14176198_DEL [dm3] 2R_18288693_DEL [dm6]	CTC	C	1.769e^-5	0.487	UTR_5_PRIME sbb UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17315817	2R_17315817_SNP [dm3] 2R_21428312_SNP [dm6]	T	C	1.800e^-5	0.487	INTRON Sdc
3L	2994853	3L_2994853_SNP [dm3] 3L_2994853_SNP [dm6]	T	C	1.806e^-5	0.487	UPSTREAM CG2113 INTERGENIC
3R	22723082	3R_22723082_SNP [dm3] 3R_26897360_SNP [dm6]	C	T	1.861e^-5	0.495	INTRON T48	regulatory region REDfly_CRMs
X	5418503	X_5418503_SNP [dm3] X_5524470_SNP [dm6]	T	G	1.927e^-5	0.496	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	1098678	3L_1098678_SNP [dm3] 3L_1098678_SNP [dm6]	T	G	1.984e^-5	0.496	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12380127	2R_12380127_SNP [dm3] 2R_16492622_SNP [dm6]	C	T	1.997e^-5	0.496	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15914852	2R_15914852_SNP [dm3] 2R_20027347_SNP [dm6]	A	G	2.011e^-5	0.496	INTERGENIC
3L	13783444	3L_13783444_SNP [dm3] 3L_13790344_SNP [dm6]	A	G	2.024e^-5	0.496	INTRON bru-3
2L	17936474	2L_17936474_SNP [dm3] 2L_17936474_SNP [dm6]	G	T	2.025e^-5	0.496	INTERGENIC
X	10820394	X_10820394_SNP [dm3] X_10926361_SNP [dm6]	G	A	2.101e^-5	0.504	DOWNSTREAM v INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9934213	X_9934213_SNP [dm3] X_10040180_SNP [dm6]	A	G	2.112e^-5	0.504	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
X	1607086	X_1607086_SNP [dm3] X_1713053_SNP [dm6]	C	A	2.223e^-5	0.524	INTERGENIC
X	1606961	X_1606961_INS [dm3] X_1712928_INS [dm6]	G	GAG	2.264e^-5	0.524	INTERGENIC
3L	3335935	3L_3335935_SNP [dm3] 3L_3335935_SNP [dm6]	T	C	2.280e^-5	0.524	UPSTREAM CG14969 & 2 others DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	4824664	3R_4824664_SNP [dm3] 3R_8998942_SNP [dm6]	A	G	2.393e^-5	0.542	DOWNSTREAM CG11977 INTRON CG31100
X	8508370	X_8508370_SNP [dm3] X_8614337_SNP [dm6]	T	C	2.416e^-5	0.542	INTERGENIC
X	11266212	X_11266212_SNP [dm3] X_11372179_SNP [dm6]	T	G	2.465e^-5	0.542	UPSTREAM dlg1 INTRON dlg1
2R	5979693	2R_5979693_INS [dm3] 2R_10092188_INS [dm6]	A	ATGCTTTGTTGAA...	2.477e^-5	0.542	INTRON CG2269
2L	18434844	2L_18434844_SNP [dm3] 2L_18434844_SNP [dm6]	A	G	2.644e^-5	0.565	DOWNSTREAM CR44488 INTERGENIC
2L	7853585	2L_7853585_SNP [dm3] 2L_7853585_SNP [dm6]	A	G	2.649e^-5	0.565	INTRON CG14535	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12538262	2R_12538262_SNP [dm3] 2R_16650757_SNP [dm6]	A	T	2.673e^-5	0.565	UTR_3_PRIME gprs DOWNSTREAM Amyrel INTRON gprs
X	5415233	X_5415233_SNP [dm3] X_5521200_SNP [dm6]	T	A	2.753e^-5	0.573	INTERGENIC
X	7911034	X_7911034_SNP [dm3] X_8017001_SNP [dm6]	T	C	2.880e^-5	0.573	INTRON Tbh
2R	19346120	2R_19346120_SNP [dm3] 2R_23458597_SNP [dm6]	T	C	2.882e^-5	0.573	SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	12541416	3L_12541416_SNP [dm3] 3L_12548316_SNP [dm6]	G	A	2.929e^-5	0.573	INTRON sowah
3R	18215850	3R_18215850_SNP [dm3] 3R_22390128_SNP [dm6]	C	G	2.956e^-5	0.573	UTR_5_PRIME CG7059 UPSTREAM CG5379 & 1 other INTRON CG7059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5418881	X_5418881_INS [dm3] X_5524848_INS [dm6]	C	CTTCT	2.965e^-5	0.573	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	13138790	2R_13138790_SNP [dm3] 2R_17251285_SNP [dm6]	A	G	3.003e^-5	0.573	INTRON mbl
2L	18260131	2L_18260131_SNP [dm3] 2L_18260131_SNP [dm6]	A	G	3.048e^-5	0.573	DOWNSTREAM CR44901 INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15675421	3L_15675421_SNP [dm3] 3L_15682321_SNP [dm6]	T	A	3.070e^-5	0.573	DOWNSTREAM CG7304 INTRON CG7579
2L	15475771	2L_15475771_INS [dm3] 2L_15475771_INS [dm6]	T	TGT	3.084e^-5	0.573	DOWNSTREAM sna INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8508472	X_8508472_SNP [dm3] X_8614439_SNP [dm6]	C	G	3.092e^-5	0.573	INTERGENIC
X	5418656	X_5418656_SNP [dm3] X_5524623_SNP [dm6]	G	T	3.104e^-5	0.573	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	1528774	3L_1528774_SNP [dm3] 3L_1528774_SNP [dm6]	C	A	3.122e^-5	0.573	DOWNSTREAM Ir62a INTRON CG12090
2R	12378205	2R_12378205_SNP [dm3] 2R_16490700_SNP [dm6]	T	A	3.148e^-5	0.573	UPSTREAM S-Lap8 INTERGENIC
3R	25531500	3R_25531500_SNP [dm3] 3R_29705778_SNP [dm6]	C	T	3.170e^-5	0.573	INTERGENIC
3R	18666649	3R_18666649_SNP [dm3] 3R_22840927_SNP [dm6]	T	C	3.206e^-5	0.573	INTERGENIC
3R	25459289	3R_25459289_SNP [dm3] 3R_29633567_SNP [dm6]	T	C	3.304e^-5	0.581	INTRON Dop1R2
3R	23604241	3R_23604241_SNP [dm3] 3R_27778519_SNP [dm6]	C	T	3.339e^-5	0.581	SPLICE_SITE_REGION CG34353 INTRON CG34353
3R	25464557	3R_25464557_SNP [dm3] 3R_29638835_SNP [dm6]	G	A	3.375e^-5	0.581	INTRON Dop1R2
X	9934218	X_9934218_SNP [dm3] X_10040185_SNP [dm6]	T	C	3.398e^-5	0.581	SYNONYMOUS_CODING Cht6 INTRON Cht6
2L	18329759	2L_18329759_SNP [dm3] 2L_18329759_SNP [dm6]	C	A	3.435e^-5	0.581	INTRON Fas3
2R	12379845	2R_12379845_SNP [dm3] 2R_16492340_SNP [dm6]	G	A	3.446e^-5	0.581	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	214833	3R_214833_SNP [dm3] 3R_4389111_SNP [dm6]	C	A	3.517e^-5	0.581	SYNONYMOUS_CODING tub	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4304026	2L_4304026_SNP [dm3] 2L_4304026_SNP [dm6]	T	A	3.541e^-5	0.581	INTRON tutl
2L	4306970	2L_4306970_SNP [dm3] 2L_4306970_SNP [dm6]	G	T	3.541e^-5	0.581	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3814240	2R_3814240_SNP [dm3] 2R_7926735_SNP [dm6]	A	G	3.560e^-5	0.581	UTR_5_PRIME CG8791 UPSTREAM CG8791
3L	14244123	3L_14244123_INS [dm3] 3L_14251023_INS [dm6]	A	ACATACATA	3.786e^-5	0.584	INTERGENIC
3L	20087347	3L_20087347_SNP [dm3] 3L_20094247_SNP [dm6]	T	C	3.789e^-5	0.584	INTERGENIC
2L	17936363	2L_17936363_SNP [dm3] 2L_17936363_SNP [dm6]	T	A	3.805e^-5	0.584	INTERGENIC
X	10040682	X_10040682_SNP [dm3] X_10146649_SNP [dm6]	T	A	3.805e^-5	0.584	SYNONYMOUS_CODING RhoU INTRON CR44894
3R	25459149	3R_25459149_SNP [dm3] 3R_29633427_SNP [dm6]	G	C	3.829e^-5	0.584	INTRON Dop1R2
X	10859736	X_10859736_SNP [dm3] X_10965703_SNP [dm6]	A	G	3.830e^-5	0.584	SYNONYMOUS_CODING C901	TF binding site mE1_TFBS_chinmo
2L	14858849	2L_14858849_SNP [dm3] 2L_14858849_SNP [dm6]	G	T	3.874e^-5	0.584	INTERGENIC
3R	22291413	3R_22291413_SNP [dm3] 3R_26465691_SNP [dm6]	A	G	3.896e^-5	0.584	INTRON CG5455
2R	6286433	2R_6286433_SNP [dm3] 2R_10398928_SNP [dm6]	G	T	3.909e^-5	0.584	INTRON CG42732
X	8508355	X_8508355_SNP [dm3] X_8614322_SNP [dm6]	A	G	3.955e^-5	0.584	INTERGENIC
X	8508364	X_8508364_DEL [dm3] X_8614331_DEL [dm6]	AT	A	3.955e^-5	0.584	INTERGENIC
X	8508371	X_8508371_SNP [dm3] X_8614338_SNP [dm6]	C	T	3.955e^-5	0.584	INTERGENIC
X	8508442	X_8508442_SNP [dm3] X_8614409_SNP [dm6]	C	T	3.985e^-5	0.584	INTERGENIC
3R	22760393	3R_22760393_SNP [dm3] 3R_26934671_SNP [dm6]	T	C	4.041e^-5	0.585	INTRON sda
X	6437132	X_6437132_SNP [dm3] X_6543099_SNP [dm6]	C	T	4.112e^-5	0.585	START_GAINED CG34417 UTR_5_PRIME CG34417
2L	18284894	2L_18284894_DEL [dm3] 2L_18284894_DEL [dm6]	TAAATATACCCAACGACT...	T	4.138e^-5	0.585	UTR_3_PRIME CG31787	TF binding site mE1_TFBS_inv
3R	17772582	3R_17772582_SNP [dm3] 3R_21946860_SNP [dm6]	T	C	4.184e^-5	0.585	INTERGENIC
3L	23247735	3L_23247735_SNP [dm3] 3L_23254635_SNP [dm6]	A	G	4.259e^-5	0.585	INTRON nAChRalpha4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7417601	2L_7417601_SNP [dm3] 2L_7417601_SNP [dm6]	G	A	4.302e^-5	0.585	UTR_3_PRIME chm INTRON chm
3R	14313528	3R_14313528_SNP [dm3] 3R_18487806_SNP [dm6]	A	G	4.353e^-5	0.585	INTRON fru
2L	4306969	2L_4306969_SNP [dm3] 2L_4306969_SNP [dm6]	G	T	4.367e^-5	0.585	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18434835	2L_18434835_SNP [dm3] 2L_18434835_SNP [dm6]	T	G	4.381e^-5	0.585	DOWNSTREAM CR44488 INTERGENIC
2L	16541341	2L_16541341_SNP [dm3] 2L_16541341_SNP [dm6]	T	G	4.424e^-5	0.585	INTERGENIC
2L	16541422	2L_16541422_SNP [dm3] 2L_16541422_SNP [dm6]	T	G	4.424e^-5	0.585	INTERGENIC
2L	17936482	2L_17936482_SNP [dm3] 2L_17936482_SNP [dm6]	A	G	4.469e^-5	0.585	INTERGENIC
3L	14609861	3L_14609861_SNP [dm3] 3L_14616761_SNP [dm6]	T	C	4.533e^-5	0.585	INTRON shd
3L	14609881	3L_14609881_SNP [dm3] 3L_14616781_SNP [dm6]	T	A	4.533e^-5	0.585	INTRON shd
X	1613945	X_1613945_SNP [dm3] X_1719912_SNP [dm6]	A	T	4.569e^-5	0.585	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12634708	2L_12634708_SNP [dm3] 2L_12634708_SNP [dm6]	A	G	4.574e^-5	0.585	INTRON Ref2
3R	4910169	3R_4910169_SNP [dm3] 3R_9084447_SNP [dm6]	A	G	4.582e^-5	0.585	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13138785	2R_13138785_SNP [dm3] 2R_17251280_SNP [dm6]	G	T	4.607e^-5	0.585	INTRON mbl
X	12304723	X_12304723_SNP [dm3] X_12410690_SNP [dm6]	G	A	4.675e^-5	0.585	DOWNSTREAM CG2574 & 1 other INTERGENIC
X	17726179	X_17726179_SNP [dm3] X_17832146_SNP [dm6]	T	C	4.722e^-5	0.585	INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18203505	2L_18203505_SNP [dm3] 2L_18203505_SNP [dm6]	A	T	4.726e^-5	0.585	INTRON CG42750	TF binding site mE1_TFBS_cad
2L	18203540	2L_18203540_SNP [dm3] 2L_18203540_SNP [dm6]	C	T	4.726e^-5	0.585	INTRON CG42750	TF binding site mE1_TFBS_cad
3R	22220380	3R_22220380_SNP [dm3] 3R_26394658_SNP [dm6]	A	G	4.739e^-5	0.585	INTERGENIC
2L	7853520	2L_7853520_SNP [dm3] 2L_7853520_SNP [dm6]	T	C	4.747e^-5	0.585	INTRON CG14535	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22291571	3R_22291571_SNP [dm3] 3R_26465849_SNP [dm6]	G	T	4.841e^-5	0.593	INTRON CG5455
3L	20088125	3L_20088125_SNP [dm3] 3L_20095025_SNP [dm6]	A	T	4.893e^-5	0.595	INTERGENIC
2R	13061369	2R_13061369_DEL [dm3] 2R_17173864_DEL [dm6]	TT	T	5.064e^-5	0.612	INTERGENIC
X	1612948	X_1612948_SNP [dm3] X_1718915_SNP [dm6]	C	G	5.235e^-5	0.616	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14223622	2L_14223622_INS [dm3] 2L_14223622_INS [dm6]	A	AG	5.246e^-5	0.616	INTRON Dyrk2
2R	12378973	2R_12378973_SNP [dm3] 2R_16491468_SNP [dm6]	C	T	5.300e^-5	0.616	INTRON S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	12378974	2R_12378974_SNP [dm3] 2R_16491469_SNP [dm6]	T	G	5.300e^-5	0.616	INTRON S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	12379107	2R_12379107_SNP [dm3] 2R_16491602_SNP [dm6]	A	T	5.300e^-5	0.616	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	12379170	2R_12379170_SNP [dm3] 2R_16491665_SNP [dm6]	A	T	5.300e^-5	0.616	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	23298417	3L_23298417_SNP [dm3] 3L_23305317_SNP [dm6]	C	T	5.372e^-5	0.617	INTERGENIC	transposable element FlyBase
3L	23298561	3L_23298561_SNP [dm3] 3L_23305461_SNP [dm6]	A	C	5.372e^-5	0.617	INTERGENIC	transposable element FlyBase
X	11266213	X_11266213_SNP [dm3] X_11372180_SNP [dm6]	G	T	5.520e^-5	0.622	UPSTREAM dlg1 INTRON dlg1
2L	13091156	2L_13091156_INS [dm3] 2L_13091156_INS [dm6]	G	GGGCCA	5.546e^-5	0.622	DOWNSTREAM CR44197 INTERGENIC
2R	13138850	2R_13138850_SNP [dm3] 2R_17251345_SNP [dm6]	G	C	5.547e^-5	0.622	INTRON mbl
3L	23326271	3L_23326271_SNP [dm3] 3L_23333171_SNP [dm6]	A	T	5.642e^-5	0.622	INTRON alpha-Cat	transposable element FlyBase
2R	16651204	2R_16651204_SNP [dm3] 2R_20763699_SNP [dm6]	A	T	5.706e^-5	0.622	INTERGENIC
2R	6557712	2R_6557712_SNP [dm3] 2R_10670207_SNP [dm6]	G	C	5.745e^-5	0.622	INTERGENIC
3L	23340682	3L_23340682_SNP [dm3] 3L_23347582_SNP [dm6]	G	T	5.751e^-5	0.622	INTERGENIC	transposable element FlyBase
3L	23294465	3L_23294465_SNP [dm3] 3L_23301365_SNP [dm6]	A	G	5.762e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_sna transposable element FlyBase
3L	23316023	3L_23316023_SNP [dm3] 3L_23322923_SNP [dm6]	T	C	5.762e^-5	0.622	INTRON alpha-Cat
3L	23299640	3L_23299640_SNP [dm3] 3L_23306540_SNP [dm6]	T	A	5.777e^-5	0.622	INTERGENIC	transposable element FlyBase
3L	1407466	3L_1407466_SNP [dm3] 3L_1407466_SNP [dm6]	T	G	5.785e^-5	0.622	INTRON Ptp61F
2L	13117215	2L_13117215_SNP [dm3] 2L_13117215_SNP [dm6]	A	G	5.855e^-5	0.623	INTERGENIC
3R	5995605	3R_5995605_SNP [dm3] 3R_10169883_SNP [dm6]	T	C	5.861e^-5	0.623	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6773764	2R_6773764_SNP [dm3] 2R_10886259_SNP [dm6]	G	A	5.925e^-5	0.624	SYNONYMOUS_CODING CG18004 UPSTREAM CG30020 DOWNSTREAM mir-1008	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	25459574	3R_25459574_SNP [dm3] 3R_29633852_SNP [dm6]	G	A	5.936e^-5	0.624	INTRON Dop1R2
2R	14695202	2R_14695202_SNP [dm3] 2R_18807697_SNP [dm6]	G	T	6.052e^-5	0.629	DOWNSTREAM CR44468 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12380103	2R_12380103_SNP [dm3] 2R_16492598_SNP [dm6]	G	A	6.056e^-5	0.629	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12381177	2R_12381177_SNP [dm3] 2R_16493672_SNP [dm6]	T	C	6.147e^-5	0.635	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13605756	3R_13605756_SNP [dm3] 3R_17780034_SNP [dm6]	A	G	6.188e^-5	0.636	SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_chinmo
3R	23979696	3R_23979696_SNP [dm3] 3R_28153974_SNP [dm6]	T	A	6.228e^-5	0.636	INTRON CG34354
3R	24807757	3R_24807757_SNP [dm3] 3R_28982035_SNP [dm6]	T	C	6.342e^-5	0.636	INTERGENIC
2R	5718194	2R_5718194_SNP [dm3] 2R_9830689_SNP [dm6]	T	A	6.366e^-5	0.636	INTRON hebe
2L	18253408	2L_18253408_SNP [dm3] 2L_18253408_SNP [dm6]	G	A	6.394e^-5	0.636	DOWNSTREAM CG43406 INTRON CG42750
2L	18253625	2L_18253625_SNP [dm3] 2L_18253625_SNP [dm6]	G	T	6.394e^-5	0.636	DOWNSTREAM CG43406 INTRON CG42750
2R	20962664	2R_20962664_SNP [dm3] 2R_25075141_SNP [dm6]	G	T	6.395e^-5	0.636	NON_SYNONYMOUS_CODING gol UPSTREAM tRNA:CR30198 INTRON gol	TF binding site mE1_TFBS_sens
3L	2994224	3L_2994224_SNP [dm3] 3L_2994224_SNP [dm6]	G	A	6.466e^-5	0.637	UPSTREAM CG2113 INTERGENIC
2L	4248509	2L_4248509_SNP [dm3] 2L_4248509_SNP [dm6]	T	G	6.475e^-5	0.637	INTRON CR44059
X	13368291	X_13368291_SNP [dm3] X_13474258_SNP [dm6]	C	T	6.553e^-5	0.642	INTRON Neto
3R	25459148	3R_25459148_SNP [dm3] 3R_29633426_SNP [dm6]	G	T	6.601e^-5	0.643	INTRON Dop1R2
3L	18199310	3L_18199310_SNP [dm3] 3L_18206210_SNP [dm6]	C	T	6.691e^-5	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12541404	3L_12541404_SNP [dm3] 3L_12548304_SNP [dm6]	T	A	6.697e^-5	0.643	INTRON sowah
2L	8224856	2L_8224856_SNP [dm3] 2L_8224856_SNP [dm6]	C	G	6.707e^-5	0.643	NON_SYNONYMOUS_CODING Pvr
2R	13043066	2R_13043066_SNP [dm3] 2R_17155561_SNP [dm6]	C	A	6.756e^-5	0.643	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
3R	10043112	3R_10043112_SNP [dm3] 3R_14217390_SNP [dm6]	T	G	6.864e^-5	0.643	DOWNSTREAM CG31326 INTRON CG9649
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	6.918e^-5	0.643	INTERGENIC
2R	12380741	2R_12380741_SNP [dm3] 2R_16493236_SNP [dm6]	A	G	6.984e^-5	0.643	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12380757	2R_12380757_SNP [dm3] 2R_16493252_SNP [dm6]	G	T	6.984e^-5	0.643	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7471821	2L_7471821_SNP [dm3] 2L_7471821_SNP [dm6]	G	A	7.003e^-5	0.643	SYNONYMOUS_CODING CG6055 DOWNSTREAM Ziz
X	5418557	X_5418557_SNP [dm3] X_5524524_SNP [dm6]	C	T	7.029e^-5	0.643	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	16774303	3L_16774303_DEL [dm3] 3L_16781203_DEL [dm6]	TT	T	7.065e^-5	0.643	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
2L	18301822	2L_18301822_SNP [dm3] 2L_18301822_SNP [dm6]	A	G	7.074e^-5	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12343105	3L_12343105_INS [dm3] 3L_12350005_INS [dm6]	G	GATTTCCT	7.085e^-5	0.643	INTRON CrzR
2R	19032649	2R_19032649_DEL [dm3] 2R_23145126_DEL [dm6]	CCGTCATCCC	C	7.110e^-5	0.643	DOWNSTREAM Klp59D INTERGENIC
2L	6389422	2L_6389422_SNP [dm3] 2L_6389422_SNP [dm6]	C	T	7.124e^-5	0.643	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7318218	3R_7318218_SNP [dm3] 3R_11492496_SNP [dm6]	C	A	7.162e^-5	0.644	INTERGENIC
2R	8624287	2R_8624287_SNP [dm3] 2R_12736782_SNP [dm6]	G	C	7.263e^-5	0.65	INTRON CG42663
3L	11279364	3L_11279364_DEL [dm3] 3L_11286264_DEL [dm6]	CCAGT	C	7.358e^-5	0.653	INTERGENIC
3R	23980028	3R_23980028_SNP [dm3] 3R_28154306_SNP [dm6]	C	T	7.365e^-5	0.653	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	19297391	X_19297391_SNP [dm3] X_19403358_SNP [dm6]	A	T	7.443e^-5	0.655	INTRON kek5
2L	2016399	2L_2016399_SNP [dm3] 2L_2016399_SNP [dm6]	T	C	7.489e^-5	0.655	INTRON CG4238
2L	13117171	2L_13117171_SNP [dm3] 2L_13117171_SNP [dm6]	A	C	7.498e^-5	0.655	INTERGENIC
2R	7403787	2R_7403787_SNP [dm3] 2R_11516282_SNP [dm6]	G	A	7.673e^-5	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2120256	2L_2120256_SNP [dm3] 2L_2120256_SNP [dm6]	C	G	7.692e^-5	0.655	INTERGENIC
2L	16541845	2L_16541845_SNP [dm3] 2L_16541845_SNP [dm6]	G	C	7.692e^-5	0.655	UPSTREAM CG31816 INTERGENIC
X	1609970	X_1609970_SNP [dm3] X_1715937_SNP [dm6]	G	T	7.715e^-5	0.655	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	7.729e^-5	0.655	INTERGENIC
3L	23426404	3L_23426404_SNP [dm3] 3L_23433304_SNP [dm6]	C	T	7.734e^-5	0.655	INTERGENIC	transposable element FlyBase
3L	7732152	3L_7732152_SNP [dm3] 3L_7739052_SNP [dm6]	A	T	7.747e^-5	0.655	INTRON CG32373 & 1 other
3L	12343103	3L_12343103_SNP [dm3] 3L_12350003_SNP [dm6]	T	A	7.801e^-5	0.655	INTRON CrzR
2R	17006251	2R_17006251_SNP [dm3] 2R_21118746_SNP [dm6]	C	G	7.820e^-5	0.655	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15914840	2R_15914840_SNP [dm3] 2R_20027335_SNP [dm6]	A	T	7.946e^-5	0.66	INTERGENIC
2R	15914853	2R_15914853_SNP [dm3] 2R_20027348_SNP [dm6]	A	T	7.946e^-5	0.66	INTERGENIC
3L	3335522	3L_3335522_SNP [dm3] 3L_3335522_SNP [dm6]	T	C	8.023e^-5	0.663	UPSTREAM CG14969 DOWNSTREAM Drsl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14131491	2R_14131491_SNP [dm3] 2R_18243986_SNP [dm6]	G	C	8.098e^-5	0.665	INTERGENIC
X	3462162	X_3462162_SNP [dm3] X_3568129_SNP [dm6]	T	C	8.152e^-5	0.665	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
X	12304729	X_12304729_SNP [dm3] X_12410696_SNP [dm6]	T	G	8.177e^-5	0.665	DOWNSTREAM CG2574 & 1 other INTERGENIC
3R	23981283	3R_23981283_SNP [dm3] 3R_28155561_SNP [dm6]	C	T	8.196e^-5	0.665	INTRON CG34354	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11698474	3R_11698474_SNP [dm3] 3R_15872752_SNP [dm6]	T	C	8.216e^-5	0.665	INTRON CG31183
3L	21089588	3L_21089588_SNP [dm3] 3L_21096488_SNP [dm6]	G	T	8.313e^-5	0.668	INTRON ko
2R	1377527	2R_1377527_SNP [dm3] 2R_5490022_SNP [dm6]	A	C	8.337e^-5	0.668	INTRON CG30440
2L	18288541	2L_18288541_SNP [dm3] 2L_18288541_SNP [dm6]	C	T	8.371e^-5	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4852528	3L_4852528_SNP [dm3] 3L_4852528_SNP [dm6]	A	G	8.485e^-5	0.669	UPSTREAM CG32237 INTERGENIC
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	8.544e^-5	0.669	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	13026632	3L_13026632_SNP [dm3] 3L_13033532_SNP [dm6]	T	C	8.580e^-5	0.669	UPSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl
3R	11698488	3R_11698488_SNP [dm3] 3R_15872766_SNP [dm6]	G	A	8.600e^-5	0.669	INTRON CG31183
3R	5995645	3R_5995645_SNP [dm3] 3R_10169923_SNP [dm6]	A	G	8.612e^-5	0.669	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	18320898	2L_18320898_SNP [dm3] 2L_18320898_SNP [dm6]	G	A	8.618e^-5	0.669	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16541551	2L_16541551_SNP [dm3] 2L_16541551_SNP [dm6]	A	C	8.627e^-5	0.669	UPSTREAM CG31816 INTERGENIC
3L	4375643	3L_4375643_SNP [dm3] 3L_4375643_SNP [dm6]	T	G	8.855e^-5	0.676	INTRON DopEcR
2R	1112534	2R_1112534_SNP [dm3] 2R_5225029_SNP [dm6]	G	A	8.928e^-5	0.676	INTRON Nipped-A	transposable element FlyBase
3R	9816972	3R_9816972_SNP [dm3] 3R_13991250_SNP [dm6]	G	A	8.985e^-5	0.676	INTRON rdx	TF binding site mE1_TFBS_cad
3R	21904489	3R_21904489_DEL [dm3] 3R_26078767_DEL [dm6]	TGTAGATTGG	T	9.028e^-5	0.676	INTRON dys
2L	8295662	2L_8295662_SNP [dm3] 2L_8295662_SNP [dm6]	A	C	9.057e^-5	0.676	INTRON Btk29A EXON CR43752
2R	14131714	2R_14131714_SNP [dm3] 2R_18244209_SNP [dm6]	A	C	9.058e^-5	0.676	INTERGENIC
2L	4790150	2L_4790150_SNP [dm3] 2L_4790150_SNP [dm6]	C	G	9.082e^-5	0.676	INTRON CG15630
3L	17567614	3L_17567614_SNP [dm3] 3L_17574514_SNP [dm6]	C	T	9.098e^-5	0.676	INTRON Eip74EF	TF binding site mE1_TFBS_Trl
3R	18020248	3R_18020248_SNP [dm3] 3R_22194526_SNP [dm6]	C	T	9.110e^-5	0.676	DOWNSTREAM CR45224 INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	1613403	X_1613403_SNP [dm3] X_1719370_SNP [dm6]	C	T	9.175e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22220305	3R_22220305_SNP [dm3] 3R_26394583_SNP [dm6]	T	C	9.204e^-5	0.676	INTERGENIC
2L	17936441	2L_17936441_SNP [dm3] 2L_17936441_SNP [dm6]	G	A	9.207e^-5	0.676	INTERGENIC
X	1607103	X_1607103_SNP [dm3] X_1713070_SNP [dm6]	C	G	9.254e^-5	0.676	INTERGENIC
2R	12380001	2R_12380001_SNP [dm3] 2R_16492496_SNP [dm6]	A	G	9.267e^-5	0.676	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17907306	2R_17907306_SNP [dm3] 2R_22019801_SNP [dm6]	A	C	9.304e^-5	0.676	INTRON CG34370
2L	1023471	2L_1023471_SNP [dm3] 2L_1023471_SNP [dm6]	G	T	9.421e^-5	0.676	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5979802	2R_5979802_SNP [dm3] 2R_10092297_SNP [dm6]	A	C	9.445e^-5	0.676	INTRON CG2269
3L	22450008	3L_22450008_SNP [dm3] 3L_22456908_SNP [dm6]	G	A	9.463e^-5	0.676	DOWNSTREAM CG11449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22450161	3L_22450161_SNP [dm3] 3L_22457061_SNP [dm6]	A	C	9.463e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5423489	X_5423489_SNP [dm3] X_5529456_SNP [dm6]	G	T	9.505e^-5	0.676	INTRON Vsx2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1609634	X_1609634_SNP [dm3] X_1715601_SNP [dm6]	G	A	9.520e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7703587	2R_7703587_SNP [dm3] 2R_11816082_SNP [dm6]	C	T	9.543e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14609897	3L_14609897_SNP [dm3] 3L_14616797_SNP [dm6]	C	A	9.595e^-5	0.676	INTRON shd
3L	14609938	3L_14609938_SNP [dm3] 3L_14616838_SNP [dm6]	A	G	9.595e^-5	0.676	INTRON shd
2L	741817	2L_741817_SNP [dm3] 2L_741817_SNP [dm6]	T	A	9.709e^-5	0.68	UPSTREAM Eaat2 INTRON Eaat2
2L	2526054	2L_2526054_SNP [dm3] 2L_2526054_SNP [dm6]	T	C	9.736e^-5	0.68	INTERGENIC
3R	23645386	3R_23645386_SNP [dm3] 3R_27819664_SNP [dm6]	A	G	9.766e^-5	0.68	INTRON CG34353
3R	26067630	3R_26067630_INS [dm3] 3R_30241908_INS [dm6]	T	TTAT	9.793e^-5	0.68	INTRON CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4479504	2R_4479504_SNP [dm3] 2R_8591999_SNP [dm6]	T	C	9.891e^-5	0.684	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4447006	3L_4447006_SNP [dm3] 3L_4447006_SNP [dm6]	T	C	9.956e^-5	0.686	UPSTREAM CR45739 INTRON CG12607
3R	26909701	3R_26909701_SNP [dm3] 3R_31083979_SNP [dm6]	C	A	1.017e^-4	0.692	DOWNSTREAM Sox100B INTERGENIC
3R	14313505	3R_14313505_SNP [dm3] 3R_18487783_SNP [dm6]	G	C	1.022e^-4	0.692	INTRON fru
3L	23310709	3L_23310709_SNP [dm3] 3L_23317609_SNP [dm6]	A	T	1.023e^-4	0.692	INTERGENIC
3R	27355129	3R_27355129_SNP [dm3] 3R_31529407_SNP [dm6]	A	G	1.033e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	23295043	3L_23295043_SNP [dm3] 3L_23301943_SNP [dm6]	T	A	1.033e^-4	0.692	INTERGENIC	transposable element FlyBase
X	1612105	X_1612105_SNP [dm3] X_1718072_SNP [dm6]	G	A	1.039e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3413975	3R_3413975_SNP [dm3] 3R_7588253_SNP [dm6]	A	G	1.042e^-4	0.692	INTRON CG34127
2L	11319385	2L_11319385_SNP [dm3] 2L_11319385_SNP [dm6]	T	C	1.045e^-4	0.692	DOWNSTREAM CR44583 INTERGENIC
2L	11319386	2L_11319386_SNP [dm3] 2L_11319386_SNP [dm6]	A	C	1.045e^-4	0.692	DOWNSTREAM CR44583 INTERGENIC
3L	3336130	3L_3336130_SNP [dm3] 3L_3336130_SNP [dm6]	A	G	1.046e^-4	0.692	UTR_3_PRIME Drsl6 UPSTREAM Drsl1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26780341	3R_26780341_SNP [dm3] 3R_30954619_SNP [dm6]	T	C	1.050e^-4	0.692	INTERGENIC
3R	26070248	3R_26070248_SNP [dm3] 3R_30244526_SNP [dm6]	C	T	1.054e^-4	0.692	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17223000	3L_17223000_SNP [dm3] 3L_17229900_SNP [dm6]	T	C	1.057e^-4	0.692	INTRON Rbp6
2L	18301140	2L_18301140_SNP [dm3] 2L_18301140_SNP [dm6]	T	G	1.065e^-4	0.692	INTERGENIC
X	1613342	X_1613342_SNP [dm3] X_1719309_SNP [dm6]	T	G	1.066e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16049737	2L_16049737_SNP [dm3] 2L_16049737_SNP [dm6]	G	A	1.075e^-4	0.692	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16404284	2R_16404284_SNP [dm3] 2R_20516779_SNP [dm6]	C	G	1.075e^-4	0.692	INTERGENIC
2R	17907323	2R_17907323_SNP [dm3] 2R_22019818_SNP [dm6]	G	T	1.075e^-4	0.692	INTRON CG34370
3R	18680061	3R_18680061_SNP [dm3] 3R_22854339_SNP [dm6]	A	T	1.081e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	14847370	2L_14847370_SNP [dm3] 2L_14847370_SNP [dm6]	T	C	1.081e^-4	0.692	INTRON CG15279
3R	4824590	3R_4824590_DEL [dm3] 3R_8998868_DEL [dm6]	AA	A	1.086e^-4	0.692	DOWNSTREAM CG11977 INTRON CG31100
3L	2994871	3L_2994871_SNP [dm3] 3L_2994871_SNP [dm6]	C	T	1.088e^-4	0.692	UPSTREAM CG2113 INTERGENIC
X	1609168	X_1609168_SNP [dm3] X_1715135_SNP [dm6]	T	A	1.094e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	10079917	X_10079917_DEL [dm3] X_10185884_DEL [dm6]	CACAC	C	1.095e^-4	0.692	INTRON CG43902 & 1 other
2L	14031520	2L_14031520_SNP [dm3] 2L_14031520_SNP [dm6]	A	G	1.097e^-4	0.692	SYNONYMOUS_CODING CG18095 DOWNSTREAM CR45284
3R	5995319	3R_5995319_SNP [dm3] 3R_10169597_SNP [dm6]	T	A	1.104e^-4	0.693	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8493941	2R_8493941_SNP [dm3] 2R_12606436_SNP [dm6]	A	T	1.107e^-4	0.693	INTRON Amph
2L	18216851	2L_18216851_SNP [dm3] 2L_18216851_SNP [dm6]	A	G	1.110e^-4	0.693	INTRON CG42750
3L	14609826	3L_14609826_SNP [dm3] 3L_14616726_SNP [dm6]	T	G	1.122e^-4	0.696	INTRON shd
2R	13131416	2R_13131416_SNP [dm3] 2R_17243911_SNP [dm6]	G	A	1.122e^-4	0.696	INTRON mbl	TF binding site mE1_TFBS_inv
3R	5568698	3R_5568698_SNP [dm3] 3R_9742976_SNP [dm6]	C	T	1.137e^-4	0.696	UTR_3_PRIME CG34409 UPSTREAM CG31415 DOWNSTREAM Pnn
2R	12130862	2R_12130862_SNP [dm3] 2R_16243357_SNP [dm6]	A	T	1.139e^-4	0.696	UTR_3_PRIME CngA
2R	14121915	2R_14121915_SNP [dm3] 2R_18234410_SNP [dm6]	C	T	1.149e^-4	0.696	SYNONYMOUS_CODING fj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3L	12014356	3L_12014356_SNP [dm3] 3L_12021256_SNP [dm6]	G	T	1.153e^-4	0.696	INTRON rols
3R	26086804	3R_26086804_SNP [dm3] 3R_30261082_SNP [dm6]	G	A	1.157e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	4090140	3R_4090140_SNP [dm3] 3R_8264418_SNP [dm6]	A	G	1.160e^-4	0.696	UTR_5_PRIME RpA-70 UPSTREAM Mcm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5563243	3R_5563243_SNP [dm3] 3R_9737521_SNP [dm6]	G	A	1.160e^-4	0.696	INTRON CG12950
2L	11002886	2L_11002886_SNP [dm3] 2L_11002886_SNP [dm6]	G	A	1.164e^-4	0.696	UTR_3_PRIME RpL9 DOWNSTREAM lectin-33A
3R	21904436	3R_21904436_DEL [dm3] 3R_26078714_DEL [dm6]	TT	T	1.165e^-4	0.696	INTRON dys	TF binding site mE1_TFBS_cad
X	6545659	X_6545659_INS [dm3] X_6651626_INS [dm6]	G	GTGG	1.174e^-4	0.696	UTR_3_PRIME pigs
3L	23270915	3L_23270915_SNP [dm3] 3L_23277815_SNP [dm6]	T	A	1.200e^-4	0.696	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
3R	27355321	3R_27355321_SNP [dm3] 3R_31529599_SNP [dm6]	G	T	1.202e^-4	0.696	INTERGENIC
3L	1320780	3L_1320780_SNP [dm3] 3L_1320780_SNP [dm6]	A	G	1.203e^-4	0.696	UPSTREAM Myo61F INTRON Myo61F
X	5418658	X_5418658_SNP [dm3] X_5524625_SNP [dm6]	A	G	1.208e^-4	0.696	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
X	5913207	X_5913207_SNP [dm3] X_6019174_SNP [dm6]	A	G	1.215e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9167397	2R_9167397_SNP [dm3] 2R_13279892_SNP [dm6]	G	T	1.221e^-4	0.696	INTRON Dh31-R
3L	20087402	3L_20087402_SNP [dm3] 3L_20094302_SNP [dm6]	T	A	1.222e^-4	0.696	INTERGENIC
3R	5566271	3R_5566271_SNP [dm3] 3R_9740549_SNP [dm6]	G	T	1.228e^-4	0.696	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8248615	2L_8248615_SNP [dm3] 2L_8248615_SNP [dm6]	G	A	1.237e^-4	0.696	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo
2L	18301695	2L_18301695_DEL [dm3] 2L_18301695_DEL [dm6]	CGA	AT	1.237e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16774361	3L_16774361_SNP [dm3] 3L_16781261_SNP [dm6]	C	A	1.238e^-4	0.696	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
2R	17014672	2R_17014672_SNP [dm3] 2R_21127167_SNP [dm6]	G	A	1.240e^-4	0.696	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17014686	2R_17014686_SNP [dm3] 2R_21127181_SNP [dm6]	G	A	1.240e^-4	0.696	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17014689	2R_17014689_SNP [dm3] 2R_21127184_SNP [dm6]	A	G	1.240e^-4	0.696	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17014707	2R_17014707_SNP [dm3] 2R_21127202_SNP [dm6]	T	C	1.240e^-4	0.696	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	16986639	2R_16986639_SNP [dm3] 2R_21099134_SNP [dm6]	A	G	1.242e^-4	0.696	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
3R	25293706	3R_25293706_SNP [dm3] 3R_29467984_SNP [dm6]	C	T	1.253e^-4	0.696	INTRON Ptp99A
2L	18627014	2L_18627014_SNP [dm3] 2L_18627014_SNP [dm6]	A	T	1.253e^-4	0.696	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8202577	2R_8202577_SNP [dm3] 2R_12315072_SNP [dm6]	T	A	1.257e^-4	0.696	SPLICE_SITE_REGION CG30046 INTRON CG30046
2R	19553308	2R_19553308_SNP [dm3] 2R_23665785_SNP [dm6]	G	A	1.261e^-4	0.696	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25440008	3R_25440008_SNP [dm3] 3R_29614286_SNP [dm6]	G	C	1.266e^-4	0.696	INTRON alph
3R	26657700	3R_26657700_SNP [dm3] 3R_30831978_SNP [dm6]	A	T	1.268e^-4	0.696	INTRON CG15544
3L	9517296	3L_9517296_SNP [dm3] 3L_9524196_SNP [dm6]	A	T	1.270e^-4	0.696	INTRON CG33700
3R	19012204	3R_19012204_SNP [dm3] 3R_23186482_SNP [dm6]	T	G	1.280e^-4	0.696	UTR_3_PRIME cnc DOWNSTREAM Irk1
2R	4178767	2R_4178767_SNP [dm3] 2R_8291262_SNP [dm6]	A	T	1.282e^-4	0.696	INTERGENIC
3R	21493372	3R_21493372_SNP [dm3] 3R_25667650_SNP [dm6]	C	G	1.283e^-4	0.696	INTRON Lgr3
3R	19018702	3R_19018702_SNP [dm3] 3R_23192980_SNP [dm6]	A	C	1.289e^-4	0.696	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2255723	2L_2255723_SNP [dm3] 2L_2255723_SNP [dm6]	T	C	1.290e^-4	0.696	UPSTREAM Send1 INTERGENIC
X	7917050	X_7917050_SNP [dm3] X_8023017_SNP [dm6]	G	T	1.298e^-4	0.696	INTRON Tbh	TF binding site mE1_TFBS_inv
2L	2061011	2L_2061011_SNP [dm3] 2L_2061011_SNP [dm6]	G	A	1.300e^-4	0.696	INTRON dpr3
2R	12130863	2R_12130863_SNP [dm3] 2R_16243358_SNP [dm6]	T	A	1.308e^-4	0.696	UTR_3_PRIME CngA
3R	10041252	3R_10041252_SNP [dm3] 3R_14215530_SNP [dm6]	C	T	1.309e^-4	0.696	NON_SYNONYMOUS_CODING CG9649 UPSTREAM Dop1R1
3L	14215910	3L_14215910_SNP [dm3] 3L_14222810_SNP [dm6]	A	T	1.312e^-4	0.696	INTRON nuf
X	5240151	X_5240151_SNP [dm3] X_5346118_SNP [dm6]	C	T	1.314e^-4	0.696	INTRON SK
3L	16885940	3L_16885940_SNP [dm3] 3L_16892840_SNP [dm6]	A	T	1.318e^-4	0.696	INTRON Lmpt
3R	26152824	3R_26152824_SNP [dm3] 3R_30327102_SNP [dm6]	G	A	1.319e^-4	0.696	INTRON hdc
3R	23727393	3R_23727393_SNP [dm3] 3R_27901671_SNP [dm6]	C	T	1.333e^-4	0.696	INTRON CG34353
2L	20599727	2L_20599727_SNP [dm3] 2L_20599727_SNP [dm6]	A	G	1.333e^-4	0.696	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7678655	2R_7678655_SNP [dm3] 2R_11791150_SNP [dm6]	T	A	1.338e^-4	0.696	INTRON ths	TF binding site BDTNP1_TFBS_dl
3R	5995290	3R_5995290_SNP [dm3] 3R_10169568_SNP [dm6]	G	T	1.345e^-4	0.696	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14131496	2R_14131496_SNP [dm3] 2R_18243991_SNP [dm6]	T	C	1.350e^-4	0.696	INTERGENIC
2R	12813135	2R_12813135_SNP [dm3] 2R_16925630_SNP [dm6]	G	T	1.353e^-4	0.696	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3L	18197536	3L_18197536_SNP [dm3] 3L_18204436_SNP [dm6]	T	C	1.356e^-4	0.696	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	25521264	3R_25521264_SNP [dm3] 3R_29695542_SNP [dm6]	C	A	1.356e^-4	0.696	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1611891	X_1611891_SNP [dm3] X_1717858_SNP [dm6]	A	C	1.356e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12017999	3L_12017999_INS [dm3] 3L_12024899_INS [dm6]	A	AA	1.368e^-4	0.696	INTRON rols
3L	14828545	3L_14828545_SNP [dm3] 3L_14835445_SNP [dm6]	C	T	1.369e^-4	0.696	INTRON CG17839
2L	12634751	2L_12634751_SNP [dm3] 2L_12634751_SNP [dm6]	G	A	1.370e^-4	0.696	INTRON Ref2
2L	12634769	2L_12634769_SNP [dm3] 2L_12634769_SNP [dm6]	G	A	1.370e^-4	0.696	INTRON Ref2
3L	3031708	3L_3031708_SNP [dm3] 3L_3031708_SNP [dm6]	A	G	1.370e^-4	0.696	INTERGENIC
2R	12829751	2R_12829751_SNP [dm3] 2R_16942246_SNP [dm6]	C	A	1.376e^-4	0.696	SYNONYMOUS_CODING Pkc53E
X	5418676	X_5418676_SNP [dm3] X_5524643_SNP [dm6]	T	C	1.380e^-4	0.696	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	12634723	2L_12634723_SNP [dm3] 2L_12634723_SNP [dm6]	A	T	1.381e^-4	0.696	INTRON Ref2
2L	12634739	2L_12634739_SNP [dm3] 2L_12634739_SNP [dm6]	C	T	1.381e^-4	0.696	INTRON Ref2
2L	12634741	2L_12634741_SNP [dm3] 2L_12634741_SNP [dm6]	A	G	1.381e^-4	0.696	INTRON Ref2
2L	12634744	2L_12634744_SNP [dm3] 2L_12634744_SNP [dm6]	G	A	1.381e^-4	0.696	INTRON Ref2
2L	12634746	2L_12634746_SNP [dm3] 2L_12634746_SNP [dm6]	A	T	1.381e^-4	0.696	INTRON Ref2
2L	12634754	2L_12634754_SNP [dm3] 2L_12634754_SNP [dm6]	A	G	1.381e^-4	0.696	INTRON Ref2
2L	12634792	2L_12634792_DEL [dm3] 2L_12634792_DEL [dm6]	ACATTAGGTACTATCA...	A	1.381e^-4	0.696	INTRON Ref2
3R	19189196	3R_19189196_SNP [dm3] 3R_23363474_SNP [dm6]	G	T	1.388e^-4	0.697	NON_SYNONYMOUS_CODING CG4408
2R	20965795	2R_20965795_INS [dm3] 2R_25078272_INS [dm6]	A	AT	1.390e^-4	0.697	INTRON gol
3R	5621183	3R_5621183_DEL [dm3] 3R_9795461_DEL [dm6]	GTCTAAG	G	1.393e^-4	0.697	CODON_DELETION CG8516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18301794	2L_18301794_SNP [dm3] 2L_18301794_SNP [dm6]	C	T	1.401e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2815373	X_2815373_INS [dm3] X_2921340_INS [dm6]	A	ATTATTCGAAGTA...	1.404e^-4	0.699	INTRON kirre & 1 other
X	1608612	X_1608612_SNP [dm3] X_1714579_SNP [dm6]	C	T	1.410e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5997082	3R_5997082_SNP [dm3] 3R_10171360_SNP [dm6]	C	G	1.420e^-4	0.699	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site BDTNP1_TFBS_dl
3R	14879061	3R_14879061_SNP [dm3] 3R_19053339_SNP [dm6]	C	A	1.425e^-4	0.699	INTRON cdi
2L	18303661	2L_18303661_SNP [dm3] 2L_18303661_SNP [dm6]	A	C	1.426e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21194747	3R_21194747_SNP [dm3] 3R_25369025_SNP [dm6]	T	C	1.432e^-4	0.699	INTRON Fur1
3R	20793414	3R_20793414_SNP [dm3] 3R_24967692_SNP [dm6]	C	T	1.437e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	15682364	3L_15682364_SNP [dm3] 3L_15689264_SNP [dm6]	A	G	1.443e^-4	0.699	SPLICE_SITE_REGION CG34451 INTRON CG34451	TF binding site BDTNP1_TFBS_twi
3L	15682380	3L_15682380_SNP [dm3] 3L_15689280_SNP [dm6]	T	C	1.443e^-4	0.699	INTRON CG34451	TF binding site BDTNP1_TFBS_twi
3L	11279250	3L_11279250_SNP [dm3] 3L_11286150_SNP [dm6]	C	G	1.447e^-4	0.699	DOWNSTREAM CR45404 INTERGENIC
3R	25726284	3R_25726284_SNP [dm3] 3R_29900562_SNP [dm6]	A	C	1.447e^-4	0.699	INTRON CG31038
3R	10175282	3R_10175282_SNP [dm3] 3R_14349560_SNP [dm6]	C	A	1.449e^-4	0.699	INTRON NK7.1	TF binding site mE1_TFBS_inv
3R	25165877	3R_25165877_SNP [dm3] 3R_29340155_SNP [dm6]	C	T	1.450e^-4	0.699	INTERGENIC
3R	15992223	3R_15992223_SNP [dm3] 3R_20166501_SNP [dm6]	A	G	1.476e^-4	0.709	INTERGENIC
X	6554023	X_6554023_SNP [dm3] X_6659990_SNP [dm6]	A	T	1.487e^-4	0.709	DOWNSTREAM CG3224 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23776095	3R_23776095_SNP [dm3] 3R_27950373_SNP [dm6]	T	C	1.489e^-4	0.709	SYNONYMOUS_CODING Gp93	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20962424	2R_20962424_SNP [dm3] 2R_25074901_SNP [dm6]	G	A	1.489e^-4	0.709	UTR_3_PRIME gol INTRON gol
3R	5565389	3R_5565389_SNP [dm3] 3R_9739667_SNP [dm6]	T	A	1.490e^-4	0.709	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27354997	3R_27354997_SNP [dm3] 3R_31529275_SNP [dm6]	G	A	1.497e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	16375008	3L_16375008_SNP [dm3] 3L_16381908_SNP [dm6]	T	C	1.498e^-4	0.709	UTR_3_PRIME CG4729 UPSTREAM CG4753	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run
2L	6024340	2L_6024340_SNP [dm3] 2L_6024340_SNP [dm6]	T	C	1.503e^-4	0.71	NON_SYNONYMOUS_CODING CG9107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2L	18298032	2L_18298032_SNP [dm3] 2L_18298032_SNP [dm6]	A	G	1.513e^-4	0.712	DOWNSTREAM CG5790 INTERGENIC
X	5415219	X_5415219_SNP [dm3] X_5521186_SNP [dm6]	G	T	1.516e^-4	0.712	INTERGENIC
2L	11002801	2L_11002801_SNP [dm3] 2L_11002801_SNP [dm6]	G	A	1.524e^-4	0.714	UTR_3_PRIME RpL9 DOWNSTREAM RpL9 & 1 other
3R	24154612	3R_24154612_SNP [dm3] 3R_28328890_SNP [dm6]	A	G	1.540e^-4	0.717	UPSTREAM larp INTRON larp	TF binding site mE1_TFBS_GATAe
3R	27355152	3R_27355152_SNP [dm3] 3R_31529430_SNP [dm6]	A	T	1.540e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	18279892	2R_18279892_SNP [dm3] 2R_22392387_SNP [dm6]	A	G	1.542e^-4	0.717	SYNONYMOUS_CODING CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18275733	2L_18275733_SNP [dm3] 2L_18275733_SNP [dm6]	A	G	1.548e^-4	0.718	UTR_5_PRIME CG42750	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13990416	3R_13990416_SNP [dm3] 3R_18164694_SNP [dm6]	A	G	1.554e^-4	0.719	UTR_5_PRIME Cbp20 UPSTREAM CG7218 DOWNSTREAM CG7215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8892727	2R_8892727_SNP [dm3] 2R_13005222_SNP [dm6]	T	A	1.570e^-4	0.719	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12750870	2R_12750870_SNP [dm3] 2R_16863365_SNP [dm6]	C	T	1.571e^-4	0.719	UTR_3_PRIME Psi DOWNSTREAM Psi
3L	14255795	3L_14255795_SNP [dm3] 3L_14262695_SNP [dm6]	T	C	1.574e^-4	0.719	INTERGENIC
2R	14121896	2R_14121896_SNP [dm3] 2R_18234391_SNP [dm6]	T	G	1.576e^-4	0.719	SYNONYMOUS_CODING fj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2R	9057231	2R_9057231_SNP [dm3] 2R_13169726_SNP [dm6]	G	A	1.576e^-4	0.719	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu
3R	25459893	3R_25459893_SNP [dm3] 3R_29634171_SNP [dm6]	T	G	1.581e^-4	0.719	INTRON Dop1R2
3L	3031716	3L_3031716_SNP [dm3] 3L_3031716_SNP [dm6]	C	T	1.583e^-4	0.719	INTERGENIC
2L	12634719	2L_12634719_INS [dm3] 2L_12634719_INS [dm6]	G	GT	1.585e^-4	0.719	INTRON Ref2
X	13404325	X_13404325_SNP [dm3] X_13510292_SNP [dm6]	C	A	1.593e^-4	0.721	INTRON Neto
X	18242156	X_18242156_SNP [dm3] X_18348123_SNP [dm6]	C	T	1.600e^-4	0.722	INTRON CG6123
3R	11936034	3R_11936034_SNP [dm3] 3R_16110312_SNP [dm6]	G	A	1.603e^-4	0.722	INTERGENIC
2L	15161786	2L_15161786_SNP [dm3] 2L_15161786_SNP [dm6]	A	C	1.610e^-4	0.723	DOWNSTREAM CG4168 & 1 other INTERGENIC
2L	18496803	2L_18496803_SNP [dm3] 2L_18496803_SNP [dm6]	T	A	1.614e^-4	0.724	INTRON kon
2R	5715614	2R_5715614_SNP [dm3] 2R_9828109_SNP [dm6]	T	A	1.629e^-4	0.729	UTR_3_PRIME hebe UPSTREAM dila
3L	899868	3L_899868_SNP [dm3] 3L_899868_SNP [dm6]	C	T	1.634e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	9871631	3R_9871631_SNP [dm3] 3R_14045909_SNP [dm6]	G	A	1.638e^-4	0.729	INTERGENIC
3R	18537769	3R_18537769_SNP [dm3] 3R_22712047_SNP [dm6]	T	A	1.646e^-4	0.731	INTRON wge	TF binding site mE1_TFBS_Kr
2L	12634716	2L_12634716_SNP [dm3] 2L_12634716_SNP [dm6]	A	G	1.657e^-4	0.731	INTRON Ref2
2L	4305773	2L_4305773_SNP [dm3] 2L_4305773_SNP [dm6]	C	T	1.658e^-4	0.731	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	9999082	3R_9999082_SNP [dm3] 3R_14173360_SNP [dm6]	T	G	1.662e^-4	0.731	UTR_3_PRIME Dop1R1
3R	5565391	3R_5565391_SNP [dm3] 3R_9739669_SNP [dm6]	A	T	1.663e^-4	0.731	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8224852	2L_8224852_SNP [dm3] 2L_8224852_SNP [dm6]	T	G	1.672e^-4	0.731	SYNONYMOUS_CODING Pvr
3R	13745910	3R_13745910_SNP [dm3] 3R_17920188_SNP [dm6]	G	A	1.672e^-4	0.731	UTR_5_PRIME cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12701813	3R_12701813_SNP [dm3] 3R_16876091_SNP [dm6]	A	G	1.675e^-4	0.731	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25654730	3R_25654730_SNP [dm3] 3R_29829008_SNP [dm6]	C	T	1.678e^-4	0.731	INTRON Atg16	enhancer mE1_CBP_Enhancers
3R	26085270	3R_26085270_SNP [dm3] 3R_30259548_SNP [dm6]	G	A	1.682e^-4	0.731	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5565958	3R_5565958_SNP [dm3] 3R_9740236_SNP [dm6]	C	A	1.687e^-4	0.732	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	11913589	3R_11913589_SNP [dm3] 3R_16087867_SNP [dm6]	C	A	1.702e^-4	0.735	SYNONYMOUS_CODING Mhcl DOWNSTREAM sxe2
2R	8279742	2R_8279742_SNP [dm3] 2R_12392237_SNP [dm6]	A	T	1.703e^-4	0.735	UPSTREAM Cpr49Ad INTERGENIC
3L	14647482	3L_14647482_SNP [dm3] 3L_14654382_SNP [dm6]	G	T	1.712e^-4	0.735	INTRON dlp
3L	14647508	3L_14647508_SNP [dm3] 3L_14654408_SNP [dm6]	C	G	1.712e^-4	0.735	INTRON dlp
2R	20007520	2R_20007520_SNP [dm3] 2R_24119997_SNP [dm6]	C	A	1.725e^-4	0.739	UTR_5_PRIME CG3257	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12671003	2R_12671003_SNP [dm3] 2R_16783498_SNP [dm6]	G	T	1.729e^-4	0.739	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	12634787	2L_12634787_SNP [dm3] 2L_12634787_SNP [dm6]	T	C	1.734e^-4	0.74	INTRON Ref2
3R	10120013	3R_10120013_SNP [dm3] 3R_14294291_SNP [dm6]	G	T	1.740e^-4	0.74	INTRON CG12207
3R	21547143	3R_21547143_SNP [dm3] 3R_25721421_SNP [dm6]	T	C	1.743e^-4	0.74	INTRON LpR2
2L	6740730	2L_6740730_SNP [dm3] 2L_6740730_SNP [dm6]	C	A	1.745e^-4	0.74	UPSTREAM TTLL3A INTERGENIC
3R	21904499	3R_21904499_INS [dm3] 3R_26078777_INS [dm6]	C	CAATCTACACC...	1.757e^-4	0.743	INTRON dys
3R	23723963	3R_23723963_SNP [dm3] 3R_27898241_SNP [dm6]	T	C	1.761e^-4	0.743	INTRON CG34353
3L	21084739	3L_21084739_SNP [dm3] 3L_21091639_SNP [dm6]	T	A	1.769e^-4	0.745	INTRON ko
2L	736070	2L_736070_SNP [dm3] 2L_736070_SNP [dm6]	T	G	1.778e^-4	0.747	INTERGENIC
2L	3014387	2L_3014387_SNP [dm3] 2L_3014387_SNP [dm6]	T	C	1.792e^-4	0.749	SYNONYMOUS_CODING CG17265
2R	4479483	2R_4479483_SNP [dm3] 2R_8591978_SNP [dm6]	C	T	1.793e^-4	0.749	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10042451	3R_10042451_SNP [dm3] 3R_14216729_SNP [dm6]	C	G	1.799e^-4	0.749	INTRON CG9649
3L	13115541	3L_13115541_SNP [dm3] 3L_13122441_SNP [dm6]	G	T	1.800e^-4	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25046946	3R_25046946_SNP [dm3] 3R_29221224_SNP [dm6]	G	A	1.807e^-4	0.75	SYNONYMOUS_CODING Ef1gamma DOWNSTREAM CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8133071	2R_8133071_SNP [dm3] 2R_12245566_SNP [dm6]	C	T	1.814e^-4	0.751	UPSTREAM CG43244 INTERGENIC
2L	7853552	2L_7853552_SNP [dm3] 2L_7853552_SNP [dm6]	C	G	1.816e^-4	0.751	INTRON CG14535	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17014717	2R_17014717_SNP [dm3] 2R_21127212_SNP [dm6]	T	C	1.837e^-4	0.753	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	19176120	3R_19176120_SNP [dm3] 3R_23350398_SNP [dm6]	C	G	1.837e^-4	0.753	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18242291	X_18242291_SNP [dm3] X_18348258_SNP [dm6]	T	A	1.838e^-4	0.753	INTRON CG6123
2R	12099464	2R_12099464_SNP [dm3] 2R_16211959_SNP [dm6]	G	C	1.838e^-4	0.753	INTRON mrj	TF binding site mE1_TFBS_HSA
2R	5821962	2R_5821962_SNP [dm3] 2R_9934457_SNP [dm6]	T	G	1.868e^-4	0.755	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17936330	2L_17936330_SNP [dm3] 2L_17936330_SNP [dm6]	A	G	1.871e^-4	0.755	INTERGENIC
3R	1755194	3R_1755194_DEL [dm3] 3R_5929472_DEL [dm6]	GG	G	1.872e^-4	0.755	INTRON CG34113
2L	19596621	2L_19596621_SNP [dm3] 2L_19596621_SNP [dm6]	A	T	1.876e^-4	0.755	INTRON Lar
2R	5957602	2R_5957602_SNP [dm3] 2R_10070097_SNP [dm6]	C	G	1.876e^-4	0.755	DOWNSTREAM CG1371 INTRON CG12920	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12343066	3L_12343066_SNP [dm3] 3L_12349966_SNP [dm6]	C	A	1.879e^-4	0.755	INTRON CrzR
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	1.881e^-4	0.755	UPSTREAM CG43244 INTERGENIC
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	1.881e^-4	0.755	UPSTREAM CG43244 INTERGENIC
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	1.881e^-4	0.755	DOWNSTREAM CR44315 INTERGENIC
3L	12343048	3L_12343048_SNP [dm3] 3L_12349948_SNP [dm6]	T	C	1.894e^-4	0.755	INTRON CrzR
3L	7733218	3L_7733218_SNP [dm3] 3L_7740118_SNP [dm6]	A	T	1.894e^-4	0.755	INTRON CG32373 & 1 other
3R	9827373	3R_9827373_DEL [dm3] 3R_14001651_DEL [dm6]	TGTTTTATGACTT...	T	1.899e^-4	0.755	INTRON rdx	TF binding site mE1_TFBS_cad
3R	9827446	3R_9827446_SNP [dm3] 3R_14001724_SNP [dm6]	G	C	1.899e^-4	0.755	INTRON rdx	TF binding site mE1_TFBS_cad
3R	5566478	3R_5566478_SNP [dm3] 3R_9740756_SNP [dm6]	A	G	1.915e^-4	0.755	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15294725	2R_15294725_SNP [dm3] 2R_19407220_SNP [dm6]	T	C	1.929e^-4	0.755	INTRON hts
2L	7213828	2L_7213828_SNP [dm3] 2L_7213828_SNP [dm6]	T	C	1.940e^-4	0.755	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17761394	3R_17761394_SNP [dm3] 3R_21935672_SNP [dm6]	C	T	1.947e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5418638	X_5418638_SNP [dm3] X_5524605_SNP [dm6]	G	A	1.947e^-4	0.755	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	16038296	2R_16038296_SNP [dm3] 2R_20150791_SNP [dm6]	C	T	1.950e^-4	0.755	EXON CR45229
2L	18217690	2L_18217690_SNP [dm3] 2L_18217690_SNP [dm6]	C	T	1.952e^-4	0.755	INTRON CG42750
2R	9033280	2R_9033280_SNP [dm3] 2R_13145775_SNP [dm6]	G	A	1.955e^-4	0.755	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
X	12304374	X_12304374_SNP [dm3] X_12410341_SNP [dm6]	A	G	1.958e^-4	0.755	DOWNSTREAM CG2574 & 1 other INTERGENIC
3R	25459134	3R_25459134_SNP [dm3] 3R_29633412_SNP [dm6]	C	T	1.959e^-4	0.755	INTRON Dop1R2
2L	1749711	2L_1749711_SNP [dm3] 2L_1749711_SNP [dm6]	G	C	1.964e^-4	0.755	DOWNSTREAM CG17712 INTRON CG17646
2R	5820642	2R_5820642_SNP [dm3] 2R_9933137_SNP [dm6]	C	T	1.966e^-4	0.755	INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_twi
3R	26874114	3R_26874114_SNP [dm3] 3R_31048392_SNP [dm6]	A	T	1.970e^-4	0.755	UPSTREAM Aph-4 INTERGENIC
2R	7703737	2R_7703737_SNP [dm3] 2R_11816232_SNP [dm6]	A	T	1.976e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7703752	2R_7703752_SNP [dm3] 2R_11816247_SNP [dm6]	T	G	1.976e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3335846	3L_3335846_SNP [dm3] 3L_3335846_SNP [dm6]	T	G	1.983e^-4	0.755	UPSTREAM CG14969 & 1 other DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21079359	3L_21079359_SNP [dm3] 3L_21086259_SNP [dm6]	T	G	1.987e^-4	0.755	INTRON ko	regulatory region REDfly_CRMs
X	5418644	X_5418644_SNP [dm3] X_5524611_SNP [dm6]	C	T	1.992e^-4	0.755	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	11002304	3L_11002304_SNP [dm3] 3L_11009204_SNP [dm6]	G	A	1.997e^-4	0.755	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12058380	2R_12058380_SNP [dm3] 2R_16170875_SNP [dm6]	A	T	2.004e^-4	0.755	UPSTREAM CG8435 DOWNSTREAM Ptp52F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26063317	3R_26063317_SNP [dm3] 3R_30237595_SNP [dm6]	C	G	2.006e^-4	0.755	SPLICE_SITE_REGION CG43448 INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18748860	2R_18748860_SNP [dm3] 2R_22861337_SNP [dm6]	C	G	2.009e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3335573	3L_3335573_SNP [dm3] 3L_3335573_SNP [dm6]	C	T	2.009e^-4	0.755	UPSTREAM CG14969 DOWNSTREAM Drsl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13043080	2R_13043080_SNP [dm3] 2R_17155575_SNP [dm6]	A	G	2.012e^-4	0.755	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
2R	13043095	2R_13043095_SNP [dm3] 2R_17155590_SNP [dm6]	T	C	2.012e^-4	0.755	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
2R	16165104	2R_16165104_SNP [dm3] 2R_20277599_SNP [dm6]	G	A	2.019e^-4	0.755	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16650980	2R_16650980_SNP [dm3] 2R_20763475_SNP [dm6]	A	T	2.025e^-4	0.755	INTERGENIC
2R	12058326	2R_12058326_SNP [dm3] 2R_16170821_SNP [dm6]	C	A	2.031e^-4	0.755	UTR_5_PRIME CG8435 DOWNSTREAM Ptp52F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	17567392	3L_17567392_SNP [dm3] 3L_17574292_SNP [dm6]	A	G	2.040e^-4	0.755	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9736724	2R_9736724_SNP [dm3] 2R_13849219_SNP [dm6]	A	T	2.040e^-4	0.755	SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
2R	12813204	2R_12813204_SNP [dm3] 2R_16925699_SNP [dm6]	T	C	2.041e^-4	0.755	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3R	18198508	3R_18198508_SNP [dm3] 3R_22372786_SNP [dm6]	A	T	2.045e^-4	0.755	UPSTREAM CG7069 DOWNSTREAM PyK INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16986735	2R_16986735_SNP [dm3] 2R_21099230_SNP [dm6]	G	A	2.046e^-4	0.755	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	6555381	2R_6555381_SNP [dm3] 2R_10667876_SNP [dm6]	C	T	2.048e^-4	0.755	INTERGENIC
3L	23281292	3L_23281292_SNP [dm3] 3L_23288192_SNP [dm6]	T	C	2.057e^-4	0.755	DOWNSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	23288719	3L_23288719_SNP [dm3] 3L_23295619_SNP [dm6]	G	A	2.057e^-4	0.755	INTERGENIC
3L	23308609	3L_23308609_SNP [dm3] 3L_23315509_SNP [dm6]	T	G	2.057e^-4	0.755	INTERGENIC
3L	23323623	3L_23323623_SNP [dm3] 3L_23330523_SNP [dm6]	T	G	2.057e^-4	0.755	INTRON alpha-Cat
3L	23430301	3L_23430301_SNP [dm3] 3L_23437201_SNP [dm6]	T	A	2.057e^-4	0.755	INTERGENIC
3L	23465375	3L_23465375_SNP [dm3] 3L_23472275_SNP [dm6]	G	A	2.057e^-4	0.755	INTERGENIC	transposable element FlyBase
2R	17014708	2R_17014708_SNP [dm3] 2R_21127203_SNP [dm6]	C	A	2.066e^-4	0.755	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	5995598	3R_5995598_SNP [dm3] 3R_10169876_SNP [dm6]	G	A	2.074e^-4	0.755	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	4479487	2R_4479487_SNP [dm3] 2R_8591982_SNP [dm6]	G	A	2.076e^-4	0.755	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15294571	2R_15294571_SNP [dm3] 2R_19407066_SNP [dm6]	T	G	2.080e^-4	0.755	UTR_3_PRIME hts INTRON hts
3L	13040170	3L_13040170_SNP [dm3] 3L_13047070_SNP [dm6]	C	T	2.084e^-4	0.755	UTR_5_PRIME CG11279 DOWNSTREAM Syx13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	18302532	2L_18302532_SNP [dm3] 2L_18302532_SNP [dm6]	T	A	2.084e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	17020522	2L_17020522_SNP [dm3] 2L_17020522_SNP [dm6]	T	A	2.089e^-4	0.755	INTERGENIC
2R	8280143	2R_8280143_SNP [dm3] 2R_12392638_SNP [dm6]	T	A	2.091e^-4	0.755	UPSTREAM Cpr49Ad & 1 other INTERGENIC
3R	11944156	3R_11944156_SNP [dm3] 3R_16118434_SNP [dm6]	T	A	2.094e^-4	0.755	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18282301	2R_18282301_SNP [dm3] 2R_22394796_SNP [dm6]	G	T	2.101e^-4	0.756	SYNONYMOUS_CODING babos DOWNSTREAM CG13506
2R	5976398	2R_5976398_SNP [dm3] 2R_10088893_SNP [dm6]	T	A	2.109e^-4	0.757	INTRON CG2269
3L	15676853	3L_15676853_SNP [dm3] 3L_15683753_SNP [dm6]	T	A	2.114e^-4	0.757	UPSTREAM pgant8 & 1 other INTERGENIC
2L	7788965	2L_7788965_SNP [dm3] 2L_7788965_SNP [dm6]	A	T	2.116e^-4	0.757	INTRON CG7149
3L	23478138	3L_23478138_SNP [dm3] 3L_23485038_SNP [dm6]	G	A	2.129e^-4	0.759	INTERGENIC	transposable element FlyBase
2R	12766288	2R_12766288_SNP [dm3] 2R_16878783_SNP [dm6]	T	C	2.131e^-4	0.759	INTRON CG8910
3R	14649594	3R_14649594_SNP [dm3] 3R_18823872_SNP [dm6]	G	T	2.134e^-4	0.759	INTRON CG18208
2R	17236348	2R_17236348_SNP [dm3] 2R_21348843_SNP [dm6]	T	A	2.159e^-4	0.761	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	2.162e^-4	0.761	UPSTREAM CG43244 INTERGENIC
3R	25457611	3R_25457611_SNP [dm3] 3R_29631889_SNP [dm6]	T	C	2.163e^-4	0.761	UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16528945	3L_16528945_DEL [dm3] 3L_16535845_DEL [dm6]	AA	A	2.165e^-4	0.761	INTRON CG43373	TF binding site BDTNP1_TFBS_twi
2R	8855166	2R_8855166_SNP [dm3] 2R_12967661_SNP [dm6]	G	A	2.171e^-4	0.761	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21006709	3R_21006709_SNP [dm3] 3R_25180987_SNP [dm6]	G	C	2.177e^-4	0.761	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18184885	3R_18184885_SNP [dm3] 3R_22359163_SNP [dm6]	G	T	2.181e^-4	0.761	INTRON Sar1
2L	10092620	2L_10092620_SNP [dm3] 2L_10092620_SNP [dm6]	T	A	2.183e^-4	0.761	UPSTREAM CG13133 INTRON CG44153
2R	4479498	2R_4479498_SNP [dm3] 2R_8591993_SNP [dm6]	T	A	2.184e^-4	0.761	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25292943	3R_25292943_SNP [dm3] 3R_29467221_SNP [dm6]	C	G	2.185e^-4	0.761	INTRON Ptp99A
3R	3999842	3R_3999842_DEL [dm3] 3R_8174120_DEL [dm6]	AGCAGTTGCT	A	2.185e^-4	0.761	INTRON grn	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3571566	2L_3571566_SNP [dm3] 2L_3571566_SNP [dm6]	C	T	2.187e^-4	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	4312476	3L_4312476_SNP [dm3] 3L_4312476_SNP [dm6]	A	T	2.195e^-4	0.761	INTERGENIC
3R	11105913	3R_11105913_SNP [dm3] 3R_15280191_SNP [dm6]	C	T	2.201e^-4	0.761	INTERGENIC
X	1611792	X_1611792_SNP [dm3] X_1717759_SNP [dm6]	C	T	2.211e^-4	0.761	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4824642	3R_4824642_SNP [dm3] 3R_8998920_SNP [dm6]	T	A	2.213e^-4	0.761	DOWNSTREAM CG11977 INTRON CG31100
3R	15644648	3R_15644648_SNP [dm3] 3R_19818926_SNP [dm6]	T	C	2.214e^-4	0.761	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5418587	X_5418587_SNP [dm3] X_5524554_SNP [dm6]	T	A	2.216e^-4	0.761	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
X	5418594	X_5418594_SNP [dm3] X_5524561_SNP [dm6]	T	G	2.216e^-4	0.761	UPSTREAM snoRNA:Psi28S-3342 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	18282385	2R_18282385_SNP [dm3] 2R_22394880_SNP [dm6]	T	A	2.225e^-4	0.763	DOWNSTREAM CG13506 INTRON babos
3L	15727194	3L_15727194_SNP [dm3] 3L_15734094_SNP [dm6]	G	T	2.233e^-4	0.764	INTERGENIC
2R	12381520	2R_12381520_SNP [dm3] 2R_16494015_SNP [dm6]	G	C	2.241e^-4	0.765	DOWNSTREAM S-Lap8 INTERGENIC
2R	18278014	2R_18278014_SNP [dm3] 2R_22390509_SNP [dm6]	A	G	2.255e^-4	0.767	INTRON CG13506
X	5240126	X_5240126_SNP [dm3] X_5346093_SNP [dm6]	C	T	2.259e^-4	0.767	INTRON SK
3R	22764820	3R_22764820_SNP [dm3] 3R_26939098_SNP [dm6]	A	G	2.264e^-4	0.767	SYNONYMOUS_CODING sda
3R	22495518	3R_22495518_SNP [dm3] 3R_26669796_SNP [dm6]	T	C	2.265e^-4	0.767	INTRON beat-VII
3R	26084835	3R_26084835_SNP [dm3] 3R_30259113_SNP [dm6]	A	T	2.267e^-4	0.767	INTERGENIC
3R	22071105	3R_22071105_SNP [dm3] 3R_26245383_SNP [dm6]	C	G	2.271e^-4	0.767	INTRON CR42745
2L	18300912	2L_18300912_SNP [dm3] 2L_18300912_SNP [dm6]	T	C	2.280e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_sens
2L	18302869	2L_18302869_SNP [dm3] 2L_18302869_SNP [dm6]	A	C	2.280e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6569621	2L_6569621_SNP [dm3] 2L_6569621_SNP [dm6]	A	G	2.288e^-4	0.768	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4268825	3L_4268825_SNP [dm3] 3L_4268825_SNP [dm6]	A	G	2.298e^-4	0.769	INTRON CG1273	TF binding site BDTNP1_TFBS_dl
3R	18272946	3R_18272946_SNP [dm3] 3R_22447224_SNP [dm6]	T	C	2.306e^-4	0.769	UTR_5_PRIME CG34288 UPSTREAM CG12499 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	12474684	2R_12474684_DEL [dm3] 2R_16587179_DEL [dm6]	TCAAAAT	T	2.307e^-4	0.769	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	14361722	3R_14361722_SNP [dm3] 3R_18536000_SNP [dm6]	T	G	2.310e^-4	0.769	INTRON fru
3R	14361728	3R_14361728_SNP [dm3] 3R_18536006_SNP [dm6]	C	T	2.310e^-4	0.769	INTRON fru
2R	8339546	2R_8339546_SNP [dm3] 2R_12452041_SNP [dm6]	G	A	2.319e^-4	0.77	UTR_3_PRIME Dyb DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	889894	2L_889894_SNP [dm3] 2L_889894_SNP [dm6]	T	G	2.324e^-4	0.771	INTERGENIC
3R	11698442	3R_11698442_SNP [dm3] 3R_15872720_SNP [dm6]	A	G	2.345e^-4	0.772	INTRON CG31183
3R	11698481	3R_11698481_SNP [dm3] 3R_15872759_SNP [dm6]	T	C	2.345e^-4	0.772	INTRON CG31183
2L	18299813	2L_18299813_SNP [dm3] 2L_18299813_SNP [dm6]	C	A	2.345e^-4	0.772	INTERGENIC
3L	3334683	3L_3334683_SNP [dm3] 3L_3334683_SNP [dm6]	A	G	2.345e^-4	0.772	START_GAINED CG14969 UTR_5_PRIME CG14969 DOWNSTREAM Drsl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18240291	2L_18240291_SNP [dm3] 2L_18240291_SNP [dm6]	C	A	2.362e^-4	0.773	INTRON CG42750
3R	9684627	3R_9684627_SNP [dm3] 3R_13858905_SNP [dm6]	G	C	2.364e^-4	0.773	INTERGENIC
3R	14380596	3R_14380596_SNP [dm3] 3R_18554874_SNP [dm6]	T	G	2.364e^-4	0.773	INTERGENIC
2R	1309354	2R_1309354_DEL [dm3] 2R_5421849_DEL [dm6]	AAAGT	TC	2.365e^-4	0.773	INTRON laccase2	TF binding site mE1_TFBS_sens
3R	26067792	3R_26067792_SNP [dm3] 3R_30242070_SNP [dm6]	C	G	2.372e^-4	0.774	INTRON CG9737	TF binding site mE1_TFBS_HSA
2R	13734037	2R_13734037_DEL [dm3] 2R_17846532_DEL [dm6]	TACGCT	T	2.382e^-4	0.776	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12058379	2R_12058379_SNP [dm3] 2R_16170874_SNP [dm6]	C	G	2.394e^-4	0.776	UPSTREAM CG8435 DOWNSTREAM Ptp52F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	6930173	3R_6930173_SNP [dm3] 3R_11104451_SNP [dm6]	A	G	2.397e^-4	0.776	INTERGENIC
2R	6027535	2R_6027535_SNP [dm3] 2R_10140030_SNP [dm6]	C	A	2.401e^-4	0.776	NON_SYNONYMOUS_CODING Or46a UPSTREAM Or46a DOWNSTREAM CG12917 EXON CR43467	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26519305	3R_26519305_SNP [dm3] 3R_30693583_SNP [dm6]	C	G	2.402e^-4	0.776	UTR_3_PRIME CG12069 DOWNSTREAM Spn100A & 1 other
2R	16950665	2R_16950665_SNP [dm3] 2R_21063160_SNP [dm6]	C	G	2.402e^-4	0.776	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
3R	17362928	3R_17362928_SNP [dm3] 3R_21537206_SNP [dm6]	T	C	2.406e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12634697	2L_12634697_SNP [dm3] 2L_12634697_SNP [dm6]	A	T	2.411e^-4	0.776	INTRON Ref2
X	5694650	X_5694650_SNP [dm3] X_5800617_SNP [dm6]	T	C	2.425e^-4	0.778	INTERGENIC
3R	6931688	3R_6931688_SNP [dm3] 3R_11105966_SNP [dm6]	C	A	2.431e^-4	0.778	INTERGENIC
2R	17562532	2R_17562532_SNP [dm3] 2R_21675027_SNP [dm6]	A	G	2.432e^-4	0.778	UTR_5_PRIME CG30263
2R	13138554	2R_13138554_INS [dm3] 2R_17251049_INS [dm6]	T	TG	2.441e^-4	0.778	INTRON mbl
2R	19067844	2R_19067844_SNP [dm3] 2R_23180321_SNP [dm6]	A	G	2.442e^-4	0.778	INTRON CG34371
3L	7801133	3L_7801133_SNP [dm3] 3L_7808033_SNP [dm6]	T	A	2.451e^-4	0.778	INTRON CG32369	TF binding site mE1_TFBS_Trl
X	2815432	X_2815432_SNP [dm3] X_2921399_SNP [dm6]	T	C	2.460e^-4	0.778	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	1139692	2R_1139692_SNP [dm3] 2R_5252187_SNP [dm6]	A	T	2.461e^-4	0.778	INTERGENIC
3R	26781654	3R_26781654_SNP [dm3] 3R_30955932_SNP [dm6]	T	G	2.462e^-4	0.778	INTERGENIC
2R	7403279	2R_7403279_SNP [dm3] 2R_11515774_SNP [dm6]	G	A	2.467e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	3122125	X_3122125_INS [dm3] X_3228092_INS [dm6]	A	GC	2.467e^-4	0.778	INTRON dnc
2R	7952667	2R_7952667_SNP [dm3] 2R_12065162_SNP [dm6]	C	T	2.470e^-4	0.778	SYNONYMOUS_CODING CG8888
2L	10462756	2L_10462756_DEL [dm3] 2L_10462756_DEL [dm6]	TGAAATA	T	2.476e^-4	0.778	DOWNSTREAM RluA-1 & 1 other INTERGENIC
3R	13605006	3R_13605006_SNP [dm3] 3R_17779284_SNP [dm6]	T	C	2.477e^-4	0.778	SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19944395	3R_19944395_DEL [dm3] 3R_24118673_DEL [dm6]	TT	T	2.499e^-4	0.783	UTR_5_PRIME Rootletin INTRON Rootletin
2L	18274838	2L_18274838_SNP [dm3] 2L_18274838_SNP [dm6]	A	C	2.499e^-4	0.783	INTRON CG42750
2R	18146280	2R_18146280_SNP [dm3] 2R_22258775_SNP [dm6]	G	A	2.505e^-4	0.783	INTRON dve
2L	14799696	2L_14799696_SNP [dm3] 2L_14799696_SNP [dm6]	A	T	2.508e^-4	0.783	INTERGENIC
2L	18254594	2L_18254594_SNP [dm3] 2L_18254594_SNP [dm6]	C	G	2.513e^-4	0.783	INTRON CG42750
2R	18748463	2R_18748463_SNP [dm3] 2R_22860940_SNP [dm6]	G	T	2.524e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13605069	3R_13605069_SNP [dm3] 3R_17779347_SNP [dm6]	A	G	2.526e^-4	0.783	SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_chinmo
2L	22296075	2L_22296075_SNP [dm3] 2L_22296075_SNP [dm6]	G	T	2.526e^-4	0.783	INTERGENIC	transposable element FlyBase
2L	18263376	2L_18263376_SNP [dm3] 2L_18263376_SNP [dm6]	C	A	2.534e^-4	0.783	INTRON CG42750
2L	16376690	2L_16376690_DEL [dm3] 2L_16376690_DEL [dm6]	AATATATAT	A	2.536e^-4	0.783	INTERGENIC
3R	26874059	3R_26874059_SNP [dm3] 3R_31048337_SNP [dm6]	C	G	2.547e^-4	0.783	UPSTREAM Aph-4 INTERGENIC
2L	4247071	2L_4247071_SNP [dm3] 2L_4247071_SNP [dm6]	T	A	2.551e^-4	0.783	INTRON CR44059
2L	315338	2L_315338_SNP [dm3] 2L_315338_SNP [dm6]	A	C	2.560e^-4	0.783	INTRON Plc21C	TF binding site BDTNP1_TFBS_dl
2R	15294716	2R_15294716_SNP [dm3] 2R_19407211_SNP [dm6]	C	T	2.572e^-4	0.783	INTRON hts
2L	4039868	2L_4039868_SNP [dm3] 2L_4039868_SNP [dm6]	G	A	2.578e^-4	0.783	INTRON ed
X	17373266	X_17373266_SNP [dm3] X_17479233_SNP [dm6]	T	C	2.582e^-4	0.783	INTRON CG43658
3L	13918212	3L_13918212_INS [dm3] 3L_13925112_INS [dm6]	T	TATT	2.592e^-4	0.783	UTR_5_PRIME Rgl DOWNSTREAM CG8833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1611801	X_1611801_SNP [dm3] X_1717768_SNP [dm6]	C	T	2.598e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6024361	2L_6024361_SNP [dm3] 2L_6024361_SNP [dm6]	T	C	2.598e^-4	0.783	NON_SYNONYMOUS_CODING CG9107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3R	14361731	3R_14361731_SNP [dm3] 3R_18536009_SNP [dm6]	A	T	2.606e^-4	0.783	INTRON fru
3R	14361758	3R_14361758_SNP [dm3] 3R_18536036_SNP [dm6]	G	A	2.606e^-4	0.783	INTRON fru
2L	8160992	2L_8160992_SNP [dm3] 2L_8160992_SNP [dm6]	A	G	2.608e^-4	0.783	SYNONYMOUS_CODING Rbsn-5 DOWNSTREAM CG8498	TF binding site mE1_TFBS_sens
2L	8161127	2L_8161127_SNP [dm3] 2L_8161127_SNP [dm6]	G	A	2.608e^-4	0.783	NON_SYNONYMOUS_CODING Rbsn-5 DOWNSTREAM CG8498	TF binding site mE1_TFBS_sens
2L	8161130	2L_8161130_SNP [dm3] 2L_8161130_SNP [dm6]	C	T	2.608e^-4	0.783	SYNONYMOUS_CODING Rbsn-5 DOWNSTREAM CG8498	TF binding site mE1_TFBS_sens
3R	25481805	3R_25481805_DEL [dm3] 3R_29656083_DEL [dm6]	AT	A	2.619e^-4	0.783	INTRON Dop1R2
3L	3433697	3L_3433697_SNP [dm3] 3L_3433697_SNP [dm6]	G	A	2.623e^-4	0.783	INTRON eIF5B
3L	3433698	3L_3433698_SNP [dm3] 3L_3433698_SNP [dm6]	G	A	2.623e^-4	0.783	INTRON eIF5B
2L	18302524	2L_18302524_SNP [dm3] 2L_18302524_SNP [dm6]	G	A	2.626e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15852192	2R_15852192_SNP [dm3] 2R_19964687_SNP [dm6]	C	A	2.632e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11386105	3L_11386105_INS [dm3] 3L_11393005_INS [dm6]	T	TT	2.632e^-4	0.783	INTERGENIC
3R	12701811	3R_12701811_SNP [dm3] 3R_16876089_SNP [dm6]	A	T	2.638e^-4	0.783	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12701822	3R_12701822_SNP [dm3] 3R_16876100_SNP [dm6]	T	C	2.638e^-4	0.783	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19140634	X_19140634_SNP [dm3] X_19246601_SNP [dm6]	A	G	2.639e^-4	0.783	INTRON CG7992	TF binding site BDTNP1_TFBS_da
X	19140648	X_19140648_SNP [dm3] X_19246615_SNP [dm6]	T	C	2.639e^-4	0.783	INTRON CG7992	TF binding site BDTNP1_TFBS_da
X	19140697	X_19140697_SNP [dm3] X_19246664_SNP [dm6]	C	G	2.639e^-4	0.783	INTRON CG7992	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11698455	3R_11698455_SNP [dm3] 3R_15872733_SNP [dm6]	G	A	2.643e^-4	0.783	INTRON CG31183
2L	16541372	2L_16541372_SNP [dm3] 2L_16541372_SNP [dm6]	G	T	2.652e^-4	0.784	INTERGENIC
3R	24154620	3R_24154620_SNP [dm3] 3R_28328898_SNP [dm6]	A	T	2.658e^-4	0.784	UPSTREAM larp INTRON larp	TF binding site mE1_TFBS_GATAe
X	4729499	X_4729499_SNP [dm3] X_4835466_SNP [dm6]	G	A	2.659e^-4	0.784	INTERGENIC
3R	19190137	3R_19190137_SNP [dm3] 3R_23364415_SNP [dm6]	A	G	2.675e^-4	0.785	UPSTREAM CG4408 INTERGENIC
2R	4507866	2R_4507866_SNP [dm3] 2R_8620361_SNP [dm6]	T	A	2.683e^-4	0.785	DOWNSTREAM Cirl INTRON Cirl	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13057684	2R_13057684_DEL [dm3] 2R_17170179_DEL [dm6]	AA	A	2.686e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9827173	3R_9827173_SNP [dm3] 3R_14001451_SNP [dm6]	C	T	2.696e^-4	0.785	INTRON rdx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1627075	X_1627075_SNP [dm3] X_1733042_SNP [dm6]	T	A	2.697e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17678292	X_17678292_SNP [dm3] X_17784259_SNP [dm6]	G	A	2.701e^-4	0.785	INTERGENIC
2R	15331111	2R_15331111_SNP [dm3] 2R_19443606_SNP [dm6]	T	C	2.711e^-4	0.785	UTR_3_PRIME RpL11 UPSTREAM Arl6 DOWNSTREAM snoRNA:Psi28S-2444 & 1 other
2R	18277541	2R_18277541_SNP [dm3] 2R_22390036_SNP [dm6]	T	A	2.718e^-4	0.785	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23723352	3R_23723352_SNP [dm3] 3R_27897630_SNP [dm6]	A	C	2.723e^-4	0.785	INTRON CG34353
3L	3433558	3L_3433558_SNP [dm3] 3L_3433558_SNP [dm6]	A	C	2.732e^-4	0.785	INTRON eIF5B
2L	16376688	2L_16376688_SNP [dm3] 2L_16376688_SNP [dm6]	A	T	2.733e^-4	0.785	INTERGENIC
2R	7911768	2R_7911768_SNP [dm3] 2R_12024263_SNP [dm6]	G	T	2.742e^-4	0.785	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10642639	3R_10642639_SNP [dm3] 3R_14816917_SNP [dm6]	G	A	2.743e^-4	0.785	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12280566	2R_12280566_SNP [dm3] 2R_16393061_SNP [dm6]	G	A	2.745e^-4	0.785	INTRON Sema-2b
2R	7403777	2R_7403777_SNP [dm3] 2R_11516272_SNP [dm6]	A	C	2.748e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	23477187	3L_23477187_SNP [dm3] 3L_23484087_SNP [dm6]	T	C	2.754e^-4	0.785	INTERGENIC	transposable element FlyBase
2L	7023061	2L_7023061_SNP [dm3] 2L_7023061_SNP [dm6]	T	G	2.756e^-4	0.785	DOWNSTREAM Pcp INTRON ade3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6931377	3R_6931377_SNP [dm3] 3R_11105655_SNP [dm6]	A	G	2.757e^-4	0.785	INTERGENIC
3R	24771802	3R_24771802_SNP [dm3] 3R_28946080_SNP [dm6]	C	T	2.758e^-4	0.785	INTRON CG14521
2L	6389421	2L_6389421_SNP [dm3] 2L_6389421_SNP [dm6]	T	C	2.760e^-4	0.785	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
X	21287474	X_21287474_DEL [dm3] X_21416447_DEL [dm6]	AGGTGAGGTGA...	A	2.764e^-4	0.785	INTERGENIC
3R	9828818	3R_9828818_INS [dm3] 3R_14003096_INS [dm6]	C	CAGC	2.766e^-4	0.785	INTRON rdx
2R	20964659	2R_20964659_INS [dm3] 2R_25077136_INS [dm6]	T	TGT	2.770e^-4	0.785	DOWNSTREAM tRNA:CR30199 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	10288756	2L_10288756_SNP [dm3] 2L_10288756_SNP [dm6]	C	G	2.772e^-4	0.785	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2R	14120829	2R_14120829_SNP [dm3] 2R_18233324_SNP [dm6]	T	G	2.779e^-4	0.785	UTR_5_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12644700	2R_12644700_SNP [dm3] 2R_16757195_SNP [dm6]	A	T	2.779e^-4	0.785	INTRON unc-104
2R	3821337	2R_3821337_SNP [dm3] 2R_7933832_SNP [dm6]	G	C	2.789e^-4	0.785	SYNONYMOUS_CODING drosha
3L	2994962	3L_2994962_SNP [dm3] 3L_2994962_SNP [dm6]	T	C	2.790e^-4	0.785	UPSTREAM CG2113 INTERGENIC
2L	13117943	2L_13117943_SNP [dm3] 2L_13117943_SNP [dm6]	A	C	2.791e^-4	0.785	DOWNSTREAM CR44198 INTERGENIC
2L	13117948	2L_13117948_SNP [dm3] 2L_13117948_SNP [dm6]	C	A	2.801e^-4	0.785	DOWNSTREAM CR44198 INTERGENIC
2R	14762239	2R_14762239_SNP [dm3] 2R_18874734_SNP [dm6]	C	T	2.802e^-4	0.785	INTERGENIC
3L	19002331	3L_19002331_SNP [dm3] 3L_19009231_SNP [dm6]	A	G	2.802e^-4	0.785	INTRON nkd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24541817	3R_24541817_SNP [dm3] 3R_28716095_SNP [dm6]	A	C	2.803e^-4	0.785	NON_SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo
X	5423351	X_5423351_SNP [dm3] X_5529318_SNP [dm6]	G	A	2.809e^-4	0.786	SYNONYMOUS_CODING Vsx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25482167	3R_25482167_SNP [dm3] 3R_29656445_SNP [dm6]	A	G	2.818e^-4	0.787	INTRON Dop1R2
2R	15294701	2R_15294701_SNP [dm3] 2R_19407196_SNP [dm6]	A	T	2.826e^-4	0.788	INTRON hts
3R	2190474	3R_2190474_INS [dm3] 3R_6364752_INS [dm6]	G	GG	2.844e^-4	0.789	UTR_3_PRIME CG42724 DOWNSTREAM CG42724 INTRON CG42724
3L	10815158	3L_10815158_SNP [dm3] 3L_10822058_SNP [dm6]	A	G	2.848e^-4	0.789	INTERGENIC
2L	16541396	2L_16541396_SNP [dm3] 2L_16541396_SNP [dm6]	G	A	2.852e^-4	0.789	INTERGENIC
X	5423242	X_5423242_SNP [dm3] X_5529209_SNP [dm6]	T	C	2.856e^-4	0.789	NON_SYNONYMOUS_CODING Vsx2	TF binding site mE1_TFBS_cad
3R	20620141	3R_20620141_SNP [dm3] 3R_24794419_SNP [dm6]	C	T	2.858e^-4	0.789	NON_SYNONYMOUS_CODING Ets96B
2L	5493140	2L_5493140_SNP [dm3] 2L_5493140_SNP [dm6]	C	T	2.860e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5493145	2L_5493145_SNP [dm3] 2L_5493145_SNP [dm6]	C	A	2.860e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1776492	2R_1776492_SNP [dm3] 2R_5888987_SNP [dm6]	C	A	2.875e^-4	0.792	INTERGENIC
X	6437097	X_6437097_SNP [dm3] X_6543064_SNP [dm6]	T	G	2.877e^-4	0.792	INTRON CG34417
2L	16187855	2L_16187855_SNP [dm3] 2L_16187855_SNP [dm6]	G	A	2.896e^-4	0.795	INTRON Ca-alpha1D
3L	11477914	3L_11477914_SNP [dm3] 3L_11484814_SNP [dm6]	A	C	2.899e^-4	0.795	INTERGENIC
3R	18263424	3R_18263424_SNP [dm3] 3R_22437702_SNP [dm6]	A	G	2.907e^-4	0.797	INTERGENIC
3L	13793430	3L_13793430_SNP [dm3] 3L_13800330_SNP [dm6]	T	C	2.926e^-4	0.797	INTRON bru-3
3L	3158379	3L_3158379_SNP [dm3] 3L_3158379_SNP [dm6]	A	G	2.927e^-4	0.797	UTR_3_PRIME BtbVII DOWNSTREAM NDUFS3
3L	13516183	3L_13516183_INS [dm3] 3L_13523083_INS [dm6]	G	AAAGA	2.931e^-4	0.797	UTR_3_PRIME bru-3
2R	13631055	2R_13631055_SNP [dm3] 2R_17743550_SNP [dm6]	G	A	2.932e^-4	0.797	UTR_3_PRIME CG4996 UPSTREAM Ir54a
X	13334461	X_13334461_DEL [dm3] X_13440428_DEL [dm6]	CTC	C	2.932e^-4	0.797	INTERGENIC
2R	17683005	2R_17683005_SNP [dm3] 2R_21795500_SNP [dm6]	G	A	2.948e^-4	0.799	UPSTREAM CG34204 INTERGENIC
3R	26084798	3R_26084798_SNP [dm3] 3R_30259076_SNP [dm6]	A	G	2.951e^-4	0.799	INTERGENIC
3L	11147025	3L_11147025_SNP [dm3] 3L_11153925_SNP [dm6]	T	C	2.956e^-4	0.799	INTRON CG32082
2L	11319422	2L_11319422_INS [dm3] 2L_11319422_INS [dm6]	T	TT	2.963e^-4	0.799	DOWNSTREAM CR44583 INTERGENIC
X	12081141	X_12081141_SNP [dm3] X_12187108_SNP [dm6]	G	A	2.964e^-4	0.799	INTRON Ten-a
2L	6569581	2L_6569581_DEL [dm3] 2L_6569581_DEL [dm6]	TTT	T	2.965e^-4	0.799	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3159693	3L_3159693_SNP [dm3] 3L_3159693_SNP [dm6]	A	C	2.978e^-4	0.801	UPSTREAM pfk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	3159694	3L_3159694_SNP [dm3] 3L_3159694_SNP [dm6]	A	T	2.978e^-4	0.801	UPSTREAM pfk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	5096048	3R_5096048_DEL [dm3] 3R_9270326_DEL [dm6]	CC	C	2.996e^-4	0.802	DOWNSTREAM Vps16A INTERGENIC
2L	2311489	2L_2311489_SNP [dm3] 2L_2311489_SNP [dm6]	G	A	3.000e^-4	0.802	UPSTREAM eys INTRON CG9967	TF binding site mE1_TFBS_Trl
2R	9015203	2R_9015203_SNP [dm3] 2R_13127698_SNP [dm6]	G	T	3.005e^-4	0.802	DOWNSTREAM CG3955 INTERGENIC
3L	2278469	3L_2278469_SNP [dm3] 3L_2278469_SNP [dm6]	G	T	3.007e^-4	0.802	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18574242	3R_18574242_SNP [dm3] 3R_22748520_SNP [dm6]	C	G	3.011e^-4	0.802	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad
2L	18305581	2L_18305581_SNP [dm3] 2L_18305581_SNP [dm6]	C	G	3.013e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15759687	2L_15759687_SNP [dm3] 2L_15759687_SNP [dm6]	A	G	3.021e^-4	0.802	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	736034	2L_736034_SNP [dm3] 2L_736034_SNP [dm6]	A	G	3.030e^-4	0.802	INTERGENIC
2L	15443987	2L_15443987_SNP [dm3] 2L_15443987_SNP [dm6]	T	G	3.030e^-4	0.802	INTERGENIC
3R	27354290	3R_27354290_SNP [dm3] 3R_31528568_SNP [dm6]	C	G	3.031e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11308479	2L_11308479_INS [dm3] 2L_11308479_INS [dm6]	G	GG	3.034e^-4	0.802	DOWNSTREAM CR43721 INTERGENIC
3R	21269377	3R_21269377_SNP [dm3] 3R_25443655_SNP [dm6]	C	G	3.035e^-4	0.802	INTRON Fur1
3L	11277803	3L_11277803_SNP [dm3] 3L_11284703_SNP [dm6]	G	T	3.040e^-4	0.802	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17315943	2R_17315943_SNP [dm3] 2R_21428438_SNP [dm6]	T	C	3.043e^-4	0.802	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
2R	16847218	2R_16847218_SNP [dm3] 2R_20959713_SNP [dm6]	A	C	3.058e^-4	0.804	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18184887	3R_18184887_SNP [dm3] 3R_22359165_SNP [dm6]	A	G	3.068e^-4	0.804	INTRON Sar1
3R	10671393	3R_10671393_SNP [dm3] 3R_14845671_SNP [dm6]	A	G	3.075e^-4	0.804	SYNONYMOUS_CODING CG3610 INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18217673	2L_18217673_SNP [dm3] 2L_18217673_SNP [dm6]	C	G	3.089e^-4	0.804	INTRON CG42750
3L	4989370	3L_4989370_SNP [dm3] 3L_4989370_SNP [dm6]	G	T	3.089e^-4	0.804	INTRON Con
2L	6453106	2L_6453106_SNP [dm3] 2L_6453106_SNP [dm6]	A	T	3.090e^-4	0.804	INTRON retm	TF binding site mE1_TFBS_cad
2L	18305048	2L_18305048_SNP [dm3] 2L_18305048_SNP [dm6]	C	A	3.096e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17384525	3L_17384525_SNP [dm3] 3L_17391425_SNP [dm6]	C	A	3.101e^-4	0.804	INTERGENIC
2R	4921687	2R_4921687_SNP [dm3] 2R_9034182_SNP [dm6]	A	T	3.103e^-4	0.804	INTERGENIC
2L	6662143	2L_6662143_SNP [dm3] 2L_6662143_SNP [dm6]	T	C	3.103e^-4	0.804	NON_SYNONYMOUS_CODING CG13771 UTR_3_PRIME CG13771 DOWNSTREAM CG11070	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sbb
2R	7703317	2R_7703317_SNP [dm3] 2R_11815812_SNP [dm6]	C	G	3.107e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14609765	3L_14609765_SNP [dm3] 3L_14616665_SNP [dm6]	A	T	3.107e^-4	0.804	UTR_5_PRIME shd INTRON shd
2R	1379881	2R_1379881_SNP [dm3] 2R_5492376_SNP [dm6]	G	C	3.108e^-4	0.804	INTRON CG30440
3L	19309314	3L_19309314_SNP [dm3] 3L_19316214_SNP [dm6]	C	G	3.120e^-4	0.806	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9936074	X_9936074_SNP [dm3] X_10042041_SNP [dm6]	C	G	3.135e^-4	0.807	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
2L	10064840	2L_10064840_SNP [dm3] 2L_10064840_SNP [dm6]	A	C	3.139e^-4	0.807	SYNONYMOUS_CODING CG44153 DOWNSTREAM Spn31A
2R	13131382	2R_13131382_SNP [dm3] 2R_17243877_SNP [dm6]	A	T	3.148e^-4	0.807	INTRON mbl	TF binding site mE1_TFBS_inv
3R	26657673	3R_26657673_SNP [dm3] 3R_30831951_SNP [dm6]	T	G	3.152e^-4	0.807	INTRON CG15544
3R	5995523	3R_5995523_SNP [dm3] 3R_10169801_SNP [dm6]	A	T	3.157e^-4	0.807	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8607351	3L_8607351_SNP [dm3] 3L_8614251_SNP [dm6]	A	G	3.171e^-4	0.807	INTRON CG6282
2R	7371151	2R_7371151_SNP [dm3] 2R_11483646_SNP [dm6]	C	A	3.174e^-4	0.807	INTRON inv
3R	1812650	3R_1812650_SNP [dm3] 3R_5986928_SNP [dm6]	T	G	3.191e^-4	0.807	INTERGENIC
X	1608702	X_1608702_SNP [dm3] X_1714669_SNP [dm6]	T	C	3.195e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	728038	2L_728038_SNP [dm3] 2L_728038_SNP [dm6]	T	C	3.198e^-4	0.807	UPSTREAM Hsp60B INTERGENIC
2L	736286	2L_736286_SNP [dm3] 2L_736286_SNP [dm6]	T	G	3.198e^-4	0.807	DOWNSTREAM Eaat2 INTERGENIC
3L	3585622	3L_3585622_SNP [dm3] 3L_3585622_SNP [dm6]	A	T	3.199e^-4	0.807	INTRON Eip63E
3L	3334873	3L_3334873_SNP [dm3] 3L_3334873_SNP [dm6]	C	T	3.202e^-4	0.807	UTR_5_PRIME CG14969 DOWNSTREAM Drsl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23400478	3L_23400478_SNP [dm3] 3L_23407378_SNP [dm6]	T	G	3.203e^-4	0.807	INTERGENIC	transposable element FlyBase
2R	7473880	2R_7473880_SNP [dm3] 2R_11586375_SNP [dm6]	T	G	3.211e^-4	0.807	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12256821	2R_12256821_SNP [dm3] 2R_16369316_SNP [dm6]	G	A	3.212e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4247068	2L_4247068_SNP [dm3] 2L_4247068_SNP [dm6]	G	A	3.216e^-4	0.807	INTRON CR44059
3R	22294536	3R_22294536_SNP [dm3] 3R_26468814_SNP [dm6]	A	G	3.221e^-4	0.807	INTRON CG5455
3R	6415438	3R_6415438_SNP [dm3] 3R_10589716_SNP [dm6]	T	A	3.228e^-4	0.807	INTRON hth	TF binding site mE1_TFBS_cad
3L	3433610	3L_3433610_SNP [dm3] 3L_3433610_SNP [dm6]	C	A	3.231e^-4	0.807	INTRON eIF5B
2R	12835809	2R_12835809_SNP [dm3] 2R_16948304_SNP [dm6]	A	T	3.232e^-4	0.807	UTR_3_PRIME mute UPSTREAM CG34190 & 1 other
3R	19852343	3R_19852343_SNP [dm3] 3R_24026621_SNP [dm6]	G	C	3.235e^-4	0.807	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6569768	2L_6569768_SNP [dm3] 2L_6569768_SNP [dm6]	A	C	3.235e^-4	0.807	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5646333	2R_5646333_SNP [dm3] 2R_9758828_SNP [dm6]	T	A	3.238e^-4	0.807	UPSTREAM CG1690 INTRON trpl
X	5240132	X_5240132_SNP [dm3] X_5346099_SNP [dm6]	C	A	3.241e^-4	0.807	INTRON SK
2L	20599764	2L_20599764_SNP [dm3] 2L_20599764_SNP [dm6]	C	T	3.249e^-4	0.807	INTRON CR44909	TF binding site BDTNP1_TFBS_twi
3R	13555517	3R_13555517_SNP [dm3] 3R_17729795_SNP [dm6]	T	C	3.251e^-4	0.807	INTRON Lgr1
2L	18320873	2L_18320873_SNP [dm3] 2L_18320873_SNP [dm6]	C	T	3.251e^-4	0.807	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13447360	3R_13447360_SNP [dm3] 3R_17621638_SNP [dm6]	G	A	3.255e^-4	0.807	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
2L	18322634	2L_18322634_SNP [dm3] 2L_18322634_SNP [dm6]	C	G	3.265e^-4	0.807	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2L	17936294	2L_17936294_SNP [dm3] 2L_17936294_SNP [dm6]	T	C	3.266e^-4	0.807	INTERGENIC
3L	17551102	3L_17551102_SNP [dm3] 3L_17558002_SNP [dm6]	T	C	3.268e^-4	0.807	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15331113	2R_15331113_SNP [dm3] 2R_19443608_SNP [dm6]	A	T	3.280e^-4	0.807	UTR_3_PRIME RpL11 UPSTREAM Arl6 DOWNSTREAM snoRNA:Psi28S-2444 & 1 other
3L	3334666	3L_3334666_DEL [dm3] 3L_3334666_DEL [dm6]	CCCTTTTCGCAC...	C	3.281e^-4	0.807	UTR_5_PRIME CG14969 DOWNSTREAM Drsl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11277819	3L_11277819_SNP [dm3] 3L_11284719_SNP [dm6]	G	C	3.282e^-4	0.807	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16493455	3L_16493455_SNP [dm3] 3L_16500355_SNP [dm6]	C	T	3.296e^-4	0.807	SYNONYMOUS_CODING st INTRON CG43373
3L	18281751	3L_18281751_SNP [dm3] 3L_18288651_SNP [dm6]	T	C	3.296e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	17831392	3R_17831392_SNP [dm3] 3R_22005670_SNP [dm6]	G	T	3.297e^-4	0.807	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16457255	3L_16457255_SNP [dm3] 3L_16464155_SNP [dm6]	T	C	3.304e^-4	0.807	INTRON CG33158
3L	11429605	3L_11429605_SNP [dm3] 3L_11436505_SNP [dm6]	T	C	3.304e^-4	0.807	DOWNSTREAM CR44548 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9033908	2R_9033908_SNP [dm3] 2R_13146403_SNP [dm6]	G	A	3.308e^-4	0.807	UTR_3_PRIME Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad
3L	20532128	3L_20532128_SNP [dm3] 3L_20539028_SNP [dm6]	G	T	3.312e^-4	0.807	UTR_5_PRIME Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11823125	X_11823125_SNP [dm3] X_11929092_SNP [dm6]	A	G	3.328e^-4	0.807	SYNONYMOUS_CODING CG10362
2L	6821131	2L_6821131_SNP [dm3] 2L_6821131_SNP [dm6]	A	G	3.330e^-4	0.807	UPSTREAM sens-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6918767	3R_6918767_SNP [dm3] 3R_11093045_SNP [dm6]	C	T	3.332e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20088146	3L_20088146_SNP [dm3] 3L_20095046_SNP [dm6]	T	A	3.338e^-4	0.807	INTERGENIC
2L	18275232	2L_18275232_SNP [dm3] 2L_18275232_SNP [dm6]	G	A	3.341e^-4	0.807	INTRON CG42750
2L	8534970	2L_8534970_SNP [dm3] 2L_8534970_SNP [dm6]	A	C	3.342e^-4	0.807	UPSTREAM CG17834 INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5996556	3R_5996556_SNP [dm3] 3R_10170834_SNP [dm6]	G	A	3.345e^-4	0.807	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	20226832	3R_20226832_SNP [dm3] 3R_24401110_SNP [dm6]	C	T	3.356e^-4	0.807	UTR_3_PRIME nAChRalpha1
3R	13605005	3R_13605005_SNP [dm3] 3R_17779283_SNP [dm6]	T	G	3.356e^-4	0.807	NON_SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13605072	3R_13605072_SNP [dm3] 3R_17779350_SNP [dm6]	C	G	3.361e^-4	0.807	SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_chinmo
2L	8295606	2L_8295606_SNP [dm3] 2L_8295606_SNP [dm6]	G	C	3.361e^-4	0.807	INTRON Btk29A EXON CR43752
3R	2854052	3R_2854052_INS [dm3] 3R_7028330_INS [dm6]	T	TCTAT	3.365e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14577292	3L_14577292_SNP [dm3] 3L_14584192_SNP [dm6]	G	A	3.371e^-4	0.807	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	10207765	3R_10207765_SNP [dm3] 3R_14382043_SNP [dm6]	G	A	3.374e^-4	0.807	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7273399	2R_7273399_SNP [dm3] 2R_11385894_SNP [dm6]	C	A	3.376e^-4	0.807	SYNONYMOUS_CODING sprt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12807127	X_12807127_SNP [dm3] X_12913094_SNP [dm6]	C	A	3.379e^-4	0.807	DOWNSTREAM CR45625 INTERGENIC
3L	14517434	3L_14517434_SNP [dm3] 3L_14524334_SNP [dm6]	A	T	3.381e^-4	0.807	INTRON bbg
2R	7703011	2R_7703011_SNP [dm3] 2R_11815506_SNP [dm6]	G	A	3.385e^-4	0.807	INTERGENIC
3R	3232303	3R_3232303_SNP [dm3] 3R_7406581_SNP [dm6]	A	G	3.394e^-4	0.808	UPSTREAM Ir84a INTERGENIC
3L	22452425	3L_22452425_SNP [dm3] 3L_22459325_SNP [dm6]	A	T	3.394e^-4	0.808	UTR_3_PRIME laza	TF binding site mE1_TFBS_cad
3R	19037296	3R_19037296_INS [dm3] 3R_23211574_INS [dm6]	C	CCT	3.412e^-4	0.809	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	17791144	3R_17791144_SNP [dm3] 3R_21965422_SNP [dm6]	T	C	3.413e^-4	0.809	INTRON Eip93F
3R	25440010	3R_25440010_SNP [dm3] 3R_29614288_SNP [dm6]	C	A	3.417e^-4	0.809	INTRON alph
3L	20391753	3L_20391753_SNP [dm3] 3L_20398653_SNP [dm6]	T	A	3.428e^-4	0.809	INTRON trbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3590628	2L_3590628_SNP [dm3] 2L_3590628_SNP [dm6]	A	G	3.437e^-4	0.809	UPSTREAM CR43823 INTERGENIC
3R	22549099	3R_22549099_SNP [dm3] 3R_26723377_SNP [dm6]	G	A	3.442e^-4	0.809	INTRON CG6420
3R	2660098	3R_2660098_SNP [dm3] 3R_6834376_SNP [dm6]	C	A	3.456e^-4	0.809	INTRON Scr	regulatory region REDfly_CRMs
X	11823108	X_11823108_SNP [dm3] X_11929075_SNP [dm6]	G	A	3.463e^-4	0.809	SYNONYMOUS_CODING CG10362
3R	5014216	3R_5014216_SNP [dm3] 3R_9188494_SNP [dm6]	G	T	3.465e^-4	0.809	INTRON pum	TF binding site mE1_TFBS_inv
3L	16529347	3L_16529347_SNP [dm3] 3L_16536247_SNP [dm6]	T	A	3.471e^-4	0.809	INTRON CG43373
3R	22760692	3R_22760692_SNP [dm3] 3R_26934970_SNP [dm6]	A	T	3.474e^-4	0.809	INTRON sda
2R	12265061	2R_12265061_SNP [dm3] 2R_16377556_SNP [dm6]	A	C	3.477e^-4	0.809	INTERGENIC
3R	10347163	3R_10347163_SNP [dm3] 3R_14521441_SNP [dm6]	T	C	3.481e^-4	0.809	SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
X	9260869	X_9260869_SNP [dm3] X_9366836_SNP [dm6]	G	A	3.481e^-4	0.809	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14042380	3R_14042380_SNP [dm3] 3R_18216658_SNP [dm6]	G	A	3.485e^-4	0.809	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
2R	8120330	2R_8120330_SNP [dm3] 2R_12232825_SNP [dm6]	C	T	3.491e^-4	0.809	INTERGENIC
2R	8276915	2R_8276915_SNP [dm3] 2R_12389410_SNP [dm6]	A	T	3.496e^-4	0.809	SYNONYMOUS_CODING Cpr49Ac UTR_3_PRIME Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9298396	3R_9298396_INS [dm3] 3R_13472674_INS [dm6]	C	CC	3.502e^-4	0.809	INTERGENIC
X	371351	X_371351_SNP [dm3] X_477318_SNP [dm6]	A	T	3.502e^-4	0.809	UPSTREAM CG13373 & 1 other INTRON CG13373 EXON CR18275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18211310	2L_18211310_SNP [dm3] 2L_18211310_SNP [dm6]	T	C	3.508e^-4	0.809	INTRON CG42750
2L	7519488	2L_7519488_SNP [dm3] 2L_7519488_SNP [dm6]	T	A	3.514e^-4	0.809	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12701817	3R_12701817_SNP [dm3] 3R_16876095_SNP [dm6]	G	T	3.519e^-4	0.809	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5556115	3R_5556115_SNP [dm3] 3R_9730393_SNP [dm6]	A	T	3.520e^-4	0.809	UTR_5_PRIME FoxP DOWNSTREAM alphaTub85E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6475602	3L_6475602_DEL [dm3] 3L_6482502_DEL [dm6]	AT	A	3.525e^-4	0.809	INTRON CG42747	TF binding site mE1_TFBS_inv
2R	9167390	2R_9167390_SNP [dm3] 2R_13279885_SNP [dm6]	G	A	3.530e^-4	0.809	INTRON Dh31-R
3R	25440013	3R_25440013_SNP [dm3] 3R_29614291_SNP [dm6]	G	T	3.532e^-4	0.809	INTRON alph
2R	12575643	2R_12575643_SNP [dm3] 2R_16688138_SNP [dm6]	A	C	3.543e^-4	0.809	INTRON CG30463
2L	14962073	2L_14962073_SNP [dm3] 2L_14962073_SNP [dm6]	T	C	3.547e^-4	0.809	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14007570	3L_14007570_SNP [dm3] 3L_14014470_SNP [dm6]	A	G	3.549e^-4	0.809	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15328038	2R_15328038_SNP [dm3] 2R_19440533_SNP [dm6]	C	T	3.550e^-4	0.809	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18249130	3R_18249130_SNP [dm3] 3R_22423408_SNP [dm6]	T	C	3.566e^-4	0.809	UTR_3_PRIME pinta DOWNSTREAM mats
3L	14858745	3L_14858745_SNP [dm3] 3L_14865645_SNP [dm6]	A	G	3.570e^-4	0.809	INTRON CG17839
2R	12645085	2R_12645085_INS [dm3] 2R_16757580_INS [dm6]	T	TCTT	3.574e^-4	0.809	INTRON unc-104
X	5347149	X_5347149_SNP [dm3] X_5453116_SNP [dm6]	T	C	3.576e^-4	0.809	INTRON SPR
2L	15028870	2L_15028870_SNP [dm3] 2L_15028870_SNP [dm6]	T	C	3.579e^-4	0.809	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
X	3484767	X_3484767_SNP [dm3] X_3590734_SNP [dm6]	A	T	3.590e^-4	0.809	INTRON AstA-R1
2L	16376741	2L_16376741_INS [dm3] 2L_16376741_INS [dm6]	A	AATGCTTTTGAA...	3.596e^-4	0.809	INTERGENIC
3R	17389630	3R_17389630_SNP [dm3] 3R_21563908_SNP [dm6]	C	A	3.602e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3457708	3R_3457708_SNP [dm3] 3R_7631986_SNP [dm6]	T	A	3.606e^-4	0.809	INTRON CG34127
2R	8676356	2R_8676356_SNP [dm3] 2R_12788851_SNP [dm6]	T	A	3.609e^-4	0.809	INTRON sca EXON CR45137
3R	23312737	3R_23312737_SNP [dm3] 3R_27487015_SNP [dm6]	T	C	3.615e^-4	0.809	UPSTREAM Gr98a INTERGENIC
2R	7845713	2R_7845713_SNP [dm3] 2R_11958208_SNP [dm6]	G	A	3.616e^-4	0.809	INTRON CG13188
2L	20074662	2L_20074662_SNP [dm3] 2L_20074662_SNP [dm6]	G	T	3.618e^-4	0.809	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3869011	2L_3869011_SNP [dm3] 2L_3869011_SNP [dm6]	G	C	3.619e^-4	0.809	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
2R	7639296	2R_7639296_DEL [dm3] 2R_11751791_DEL [dm6]	ATGAACATTGCA...	A	3.626e^-4	0.809	INTERGENIC
2L	8295614	2L_8295614_SNP [dm3] 2L_8295614_SNP [dm6]	A	C	3.631e^-4	0.809	INTRON Btk29A EXON CR43752
3R	20935787	3R_20935787_SNP [dm3] 3R_25110065_SNP [dm6]	A	C	3.632e^-4	0.809	INTRON CG13650
3R	7323799	3R_7323799_SNP [dm3] 3R_11498077_SNP [dm6]	C	T	3.632e^-4	0.809	INTERGENIC
3R	17463442	3R_17463442_SNP [dm3] 3R_21637720_SNP [dm6]	A	G	3.637e^-4	0.809	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15914847	2R_15914847_SNP [dm3] 2R_20027342_SNP [dm6]	T	C	3.638e^-4	0.809	INTERGENIC
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	3.643e^-4	0.809	DOWNSTREAM Cpr50Ca INTERGENIC
2R	14695262	2R_14695262_DEL [dm3] 2R_18807757_DEL [dm6]	GAG	T	3.647e^-4	0.809	DOWNSTREAM CR44468 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
3R	10206138	3R_10206138_SNP [dm3] 3R_14380416_SNP [dm6]	C	T	3.648e^-4	0.809	DOWNSTREAM soti INTERGENIC
2R	9133899	2R_9133899_SNP [dm3] 2R_13246394_SNP [dm6]	A	T	3.650e^-4	0.809	UPSTREAM Mp20 INTERGENIC
2R	9133916	2R_9133916_DEL [dm3] 2R_13246411_DEL [dm6]	TA	C	3.650e^-4	0.809	UPSTREAM Mp20 INTERGENIC
3L	2170792	3L_2170792_SNP [dm3] 3L_2170792_SNP [dm6]	A	C	3.661e^-4	0.809	DOWNSTREAM CR15821 INTRON CG5704
3R	11105996	3R_11105996_DEL [dm3] 3R_15280274_DEL [dm6]	TATGC	T	3.662e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9218880	2R_9218880_SNP [dm3] 2R_13331375_SNP [dm6]	C	T	3.673e^-4	0.809	INTRON CR44206	TF binding site mE1_TFBS_cad
2R	11792886	2R_11792886_SNP [dm3] 2R_15905381_SNP [dm6]	G	A	3.676e^-4	0.809	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4729902	X_4729902_SNP [dm3] X_4835869_SNP [dm6]	T	C	3.677e^-4	0.809	INTERGENIC
2L	2062928	2L_2062928_SNP [dm3] 2L_2062928_SNP [dm6]	C	G	3.679e^-4	0.809	INTRON dpr3	TF binding site mE1_TFBS_chinmo
X	12592418	X_12592418_SNP [dm3] X_12698385_SNP [dm6]	A	G	3.680e^-4	0.809	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3R	26634048	3R_26634048_SNP [dm3] 3R_30808326_SNP [dm6]	C	A	3.687e^-4	0.809	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	1376333	2R_1376333_SNP [dm3] 2R_5488828_SNP [dm6]	C	A	3.691e^-4	0.809	INTRON CG30440	transposable element FlyBase
2R	4037126	2R_4037126_SNP [dm3] 2R_8149621_SNP [dm6]	G	T	3.696e^-4	0.809	UPSTREAM kermit INTRON Lpin & 1 other
3R	16803595	3R_16803595_SNP [dm3] 3R_20977873_SNP [dm6]	G	A	3.713e^-4	0.809	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5745865	X_5745865_DEL [dm3] X_5851832_DEL [dm6]	CGAA	C	3.713e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3031683	3L_3031683_SNP [dm3] 3L_3031683_SNP [dm6]	T	A	3.715e^-4	0.809	INTERGENIC
2R	3817477	2R_3817477_SNP [dm3] 2R_7929972_SNP [dm6]	C	T	3.723e^-4	0.809	UTR_3_PRIME CG30381 DOWNSTREAM CG8791
3R	9354811	3R_9354811_SNP [dm3] 3R_13529089_SNP [dm6]	T	G	3.731e^-4	0.809	SPLICE_SITE_REGION CG42778 UTR_5_PRIME CG42778
2R	13119399	2R_13119399_SNP [dm3] 2R_17231894_SNP [dm6]	T	C	3.731e^-4	0.809	INTRON mbl
2L	7020602	2L_7020602_SNP [dm3] 2L_7020602_SNP [dm6]	C	T	3.741e^-4	0.809	INTRON ade3
3L	12263921	3L_12263921_SNP [dm3] 3L_12270821_SNP [dm6]	A	G	3.743e^-4	0.809	NON_SYNONYMOUS_CODING Pbgs DOWNSTREAM CG4300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25845667	3R_25845667_SNP [dm3] 3R_30019945_SNP [dm6]	G	A	3.748e^-4	0.809	INTRON Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11887341	3L_11887341_SNP [dm3] 3L_11894241_SNP [dm6]	T	C	3.750e^-4	0.809	INTRON CG44837
3R	9822529	3R_9822529_SNP [dm3] 3R_13996807_SNP [dm6]	C	T	3.750e^-4	0.809	INTRON rdx
2L	18317924	2L_18317924_SNP [dm3] 2L_18317924_SNP [dm6]	A	G	3.755e^-4	0.809	INTERGENIC
3R	25458798	3R_25458798_SNP [dm3] 3R_29633076_SNP [dm6]	A	G	3.755e^-4	0.809	INTRON Dop1R2	TF binding site mE1_TFBS_HSA
3R	23842275	3R_23842275_SNP [dm3] 3R_28016553_SNP [dm6]	G	A	3.762e^-4	0.809	INTERGENIC
X	6545850	X_6545850_SNP [dm3] X_6651817_SNP [dm6]	G	T	3.762e^-4	0.809	UTR_3_PRIME pigs
3R	8148240	3R_8148240_INS [dm3] 3R_12322518_INS [dm6]	T	TAT	3.765e^-4	0.809	DOWNSTREAM tRNA:CR31432 INTERGENIC
X	13126048	X_13126048_SNP [dm3] X_13232015_SNP [dm6]	A	G	3.770e^-4	0.809	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18748464	2R_18748464_SNP [dm3] 2R_22860941_SNP [dm6]	G	A	3.780e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18748468	2R_18748468_SNP [dm3] 2R_22860945_SNP [dm6]	A	T	3.780e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18748471	2R_18748471_SNP [dm3] 2R_22860948_SNP [dm6]	C	A	3.780e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9934197	X_9934197_SNP [dm3] X_10040164_SNP [dm6]	A	T	3.785e^-4	0.809	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
2L	16111788	2L_16111788_SNP [dm3] 2L_16111788_SNP [dm6]	C	T	3.787e^-4	0.809	INTERGENIC
3L	21266801	3L_21266801_SNP [dm3] 3L_21273701_SNP [dm6]	T	G	3.789e^-4	0.809	INTRON AcCoAS
2L	727321	2L_727321_SNP [dm3] 2L_727321_SNP [dm6]	G	A	3.795e^-4	0.809	INTERGENIC
3R	3039509	3R_3039509_SNP [dm3] 3R_7213787_SNP [dm6]	A	G	3.797e^-4	0.809	DOWNSTREAM CG14606 INTERGENIC
2L	4205468	2L_4205468_SNP [dm3] 2L_4205468_SNP [dm6]	A	G	3.801e^-4	0.809	INTRON ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	4294478	2L_4294478_DEL [dm3] 2L_4294478_DEL [dm6]	GAGG	G	3.803e^-4	0.809	INTRON tutl
3L	18572825	3L_18572825_SNP [dm3] 3L_18579725_SNP [dm6]	A	G	3.814e^-4	0.811	INTERGENIC
3L	12312966	3L_12312966_SNP [dm3] 3L_12319866_SNP [dm6]	C	G	3.817e^-4	0.811	INTERGENIC
X	2895552	X_2895552_SNP [dm3] X_3001519_SNP [dm6]	T	C	3.835e^-4	0.813	INTRON kirre
3R	24760699	3R_24760699_SNP [dm3] 3R_28934977_SNP [dm6]	T	C	3.836e^-4	0.813	INTRON CG14521
3L	11789752	3L_11789752_SNP [dm3] 3L_11796652_SNP [dm6]	T	G	3.853e^-4	0.815	INTRON Klp68D	TF binding site mE1_TFBS_sens
2L	16082045	2L_16082045_SNP [dm3] 2L_16082045_SNP [dm6]	A	G	3.864e^-4	0.815	DOWNSTREAM beat-Ia INTERGENIC
2R	12371861	2R_12371861_SNP [dm3] 2R_16484356_SNP [dm6]	C	T	3.872e^-4	0.815	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12372007	2R_12372007_SNP [dm3] 2R_16484502_SNP [dm6]	T	G	3.872e^-4	0.815	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9999204	3R_9999204_DEL [dm3] 3R_14173482_DEL [dm6]	AGGAAAA	A	3.885e^-4	0.815	UTR_3_PRIME Dop1R1
2L	8165789	2L_8165789_SNP [dm3] 2L_8165789_SNP [dm6]	A	G	3.890e^-4	0.815	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3249138	2L_3249138_SNP [dm3] 2L_3249138_SNP [dm6]	C	T	3.894e^-4	0.815	INTERGENIC
2L	2085322	2L_2085322_SNP [dm3] 2L_2085322_SNP [dm6]	G	A	3.906e^-4	0.815	DOWNSTREAM CR44055 INTRON dpr3
3L	14103855	3L_14103855_SNP [dm3] 3L_14110755_SNP [dm6]	C	A	3.909e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10230205	2R_10230205_INS [dm3] 2R_14342700_INS [dm6]	T	TCC	3.926e^-4	0.815	INTRON Shroom	TF binding site mE1_TFBS_HSA
3L	21081863	3L_21081863_SNP [dm3] 3L_21088763_SNP [dm6]	T	C	3.935e^-4	0.815	NON_SYNONYMOUS_CODING CG33285 INTRON ko	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	4268427	3L_4268427_SNP [dm3] 3L_4268427_SNP [dm6]	C	T	3.939e^-4	0.815	UPSTREAM CG33764 INTRON CG1273
3R	16916808	3R_16916808_SNP [dm3] 3R_21091086_SNP [dm6]	T	A	3.940e^-4	0.815	INTRON RhoGAP93B & 1 other
3L	17384649	3L_17384649_SNP [dm3] 3L_17391549_SNP [dm6]	A	T	3.940e^-4	0.815	INTERGENIC
3L	12723512	3L_12723512_SNP [dm3] 3L_12730412_SNP [dm6]	T	A	3.946e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19069559	2R_19069559_SNP [dm3] 2R_23182036_SNP [dm6]	G	T	3.949e^-4	0.815	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12778055	X_12778055_SNP [dm3] X_12884022_SNP [dm6]	T	C	3.950e^-4	0.815	INTRON Pde9
2R	7440260	2R_7440260_SNP [dm3] 2R_11552755_SNP [dm6]	A	G	3.955e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10859757	X_10859757_SNP [dm3] X_10965724_SNP [dm6]	G	A	3.958e^-4	0.815	SYNONYMOUS_CODING C901	TF binding site mE1_TFBS_chinmo
2L	20090979	2L_20090979_SNP [dm3] 2L_20090979_SNP [dm6]	A	G	3.959e^-4	0.815	UPSTREAM CG10721 INTRON CG10747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4375710	3L_4375710_SNP [dm3] 3L_4375710_SNP [dm6]	G	A	3.961e^-4	0.815	INTRON DopEcR
2R	20963394	2R_20963394_SNP [dm3] 2R_25075871_SNP [dm6]	C	T	3.961e^-4	0.815	UPSTREAM tRNA:CR30198 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	6965130	3R_6965130_SNP [dm3] 3R_11139408_SNP [dm6]	G	A	3.961e^-4	0.815	SYNONYMOUS_CODING CG4706
2R	18277494	2R_18277494_SNP [dm3] 2R_22389989_SNP [dm6]	C	T	3.962e^-4	0.815	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15281279	2R_15281279_SNP [dm3] 2R_19393774_SNP [dm6]	G	T	3.969e^-4	0.815	SYNONYMOUS_CODING SdhA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7703168	2R_7703168_INS [dm3] 2R_11815663_INS [dm6]	A	ATCACTTTA	3.969e^-4	0.815	INTERGENIC
X	11266065	X_11266065_SNP [dm3] X_11372032_SNP [dm6]	C	T	3.970e^-4	0.815	UPSTREAM dlg1 INTRON dlg1
3R	10043473	3R_10043473_SNP [dm3] 3R_14217751_SNP [dm6]	C	A	3.976e^-4	0.815	START_GAINED CG9649 UTR_5_PRIME CG9649 DOWNSTREAM CG31326
3R	20813013	3R_20813013_SNP [dm3] 3R_24987291_SNP [dm6]	T	A	3.976e^-4	0.815	INTRON tnc
3L	23399368	3L_23399368_SNP [dm3] 3L_23406268_SNP [dm6]	C	A	3.983e^-4	0.815	INTERGENIC	transposable element FlyBase
3L	5376455	3L_5376455_SNP [dm3] 3L_5383355_SNP [dm6]	T	A	3.985e^-4	0.815	UPSTREAM Ir64a INTERGENIC
3R	6930163	3R_6930163_SNP [dm3] 3R_11104441_SNP [dm6]	T	A	3.987e^-4	0.815	INTERGENIC
3R	23504176	3R_23504176_SNP [dm3] 3R_27678454_SNP [dm6]	T	C	4.021e^-4	0.818	SYNONYMOUS_CODING CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13524103	3R_13524103_SNP [dm3] 3R_17698381_SNP [dm6]	C	A	4.043e^-4	0.818	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
3L	7704698	3L_7704698_SNP [dm3] 3L_7711598_SNP [dm6]	T	C	4.044e^-4	0.818	INTRON CG32373 & 1 other
2L	18286874	2L_18286874_SNP [dm3] 2L_18286874_SNP [dm6]	C	T	4.050e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	11348722	X_11348722_SNP [dm3] X_11454689_SNP [dm6]	G	T	4.051e^-4	0.818	UPSTREAM HP5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	17097888	X_17097888_SNP [dm3] X_17203855_SNP [dm6]	A	T	4.056e^-4	0.818	UTR_3_PRIME CG5070
2R	12382223	2R_12382223_SNP [dm3] 2R_16494718_SNP [dm6]	T	G	4.057e^-4	0.818	INTERGENIC
3R	22143461	3R_22143461_SNP [dm3] 3R_26317739_SNP [dm6]	A	C	4.074e^-4	0.818	UPSTREAM CG33970 INTERGENIC
2R	16164818	2R_16164818_SNP [dm3] 2R_20277313_SNP [dm6]	T	C	4.080e^-4	0.818	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad
2L	8295528	2L_8295528_DEL [dm3] 2L_8295528_DEL [dm6]	TAATTAAGCAATG...	T	4.087e^-4	0.818	INTRON Btk29A EXON CR43752
2R	8206110	2R_8206110_SNP [dm3] 2R_12318605_SNP [dm6]	G	A	4.088e^-4	0.818	INTERGENIC	transposable element FlyBase
2L	18318003	2L_18318003_SNP [dm3] 2L_18318003_SNP [dm6]	A	G	4.090e^-4	0.818	INTERGENIC
3R	10041672	3R_10041672_SNP [dm3] 3R_14215950_SNP [dm6]	G	A	4.091e^-4	0.818	INTRON CG9649
2L	4205452	2L_4205452_SNP [dm3] 2L_4205452_SNP [dm6]	C	A	4.112e^-4	0.818	INTRON ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	13445629	3R_13445629_SNP [dm3] 3R_17619907_SNP [dm6]	T	A	4.112e^-4	0.818	UPSTREAM tRNA:P:90Cb DOWNSTREAM tRNA:A:90C & 2 others INTERGENIC
3R	13448881	3R_13448881_SNP [dm3] 3R_17623159_SNP [dm6]	T	G	4.112e^-4	0.818	DOWNSTREAM tRNA:CR33534 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2542765	3L_2542765_SNP [dm3] 3L_2542765_SNP [dm6]	T	A	4.133e^-4	0.818	INTRON Spn	TF binding site mE1_TFBS_cad
3L	2542873	3L_2542873_SNP [dm3] 3L_2542873_SNP [dm6]	A	G	4.133e^-4	0.818	INTRON Spn	TF binding site mE1_TFBS_cad
3L	2543298	3L_2543298_SNP [dm3] 3L_2543298_SNP [dm6]	T	G	4.133e^-4	0.818	INTRON Spn	TF binding site mE1_TFBS_cad
3L	2543442	3L_2543442_SNP [dm3] 3L_2543442_SNP [dm6]	C	G	4.133e^-4	0.818	INTRON Spn	TF binding site mE1_TFBS_cad
2R	8876027	2R_8876027_SNP [dm3] 2R_12988522_SNP [dm6]	C	G	4.134e^-4	0.818	INTERGENIC
2R	4971703	2R_4971703_SNP [dm3] 2R_9084198_SNP [dm6]	A	G	4.139e^-4	0.818	SYNONYMOUS_CODING CNT1 DOWNSTREAM CG13742
2R	15329667	2R_15329667_SNP [dm3] 2R_19442162_SNP [dm6]	T	A	4.142e^-4	0.818	UPSTREAM RpL11 & 1 other DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	6828006	3L_6828006_SNP [dm3] 3L_6834906_SNP [dm6]	T	C	4.153e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5326859	X_5326859_SNP [dm3] X_5432826_SNP [dm6]	C	A	4.154e^-4	0.818	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	21081888	3L_21081888_SNP [dm3] 3L_21088788_SNP [dm6]	G	A	4.165e^-4	0.818	SYNONYMOUS_CODING CG33285 INTRON ko	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	17388355	3R_17388355_SNP [dm3] 3R_21562633_SNP [dm6]	A	C	4.167e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12858117	2R_12858117_SNP [dm3] 2R_16970612_SNP [dm6]	A	T	4.168e^-4	0.818	EXON CR44377
2L	4792467	2L_4792467_SNP [dm3] 2L_4792467_SNP [dm6]	A	G	4.173e^-4	0.818	INTRON CG15630
3R	2689095	3R_2689095_SNP [dm3] 3R_6863373_SNP [dm6]	G	T	4.178e^-4	0.818	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14809266	3R_14809266_SNP [dm3] 3R_18983544_SNP [dm6]	A	G	4.187e^-4	0.818	UTR_5_PRIME snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12493767	2L_12493767_SNP [dm3] 2L_12493767_SNP [dm6]	T	G	4.193e^-4	0.818	UPSTREAM bun INTRON bun
2L	16867826	2L_16867826_SNP [dm3] 2L_16867826_SNP [dm6]	A	T	4.195e^-4	0.818	INTERGENIC
3R	25457606	3R_25457606_SNP [dm3] 3R_29631884_SNP [dm6]	C	T	4.221e^-4	0.818	UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2008174	3L_2008174_SNP [dm3] 3L_2008174_SNP [dm6]	C	A	4.230e^-4	0.818	DOWNSTREAM CR44535 INTERGENIC
3L	2008175	3L_2008175_SNP [dm3] 3L_2008175_SNP [dm6]	A	G	4.230e^-4	0.818	DOWNSTREAM CR44535 INTERGENIC
3R	26538537	3R_26538537_SNP [dm3] 3R_30712815_SNP [dm6]	G	T	4.231e^-4	0.818	INTERGENIC
3L	4743440	3L_4743440_SNP [dm3] 3L_4743440_SNP [dm6]	C	T	4.244e^-4	0.818	INTRON RhoGEF64C
X	12778069	X_12778069_SNP [dm3] X_12884036_SNP [dm6]	C	T	4.248e^-4	0.818	INTRON Pde9
3R	18555558	3R_18555558_SNP [dm3] 3R_22729836_SNP [dm6]	C	T	4.252e^-4	0.818	SYNONYMOUS_CODING CG45049
3L	6475597	3L_6475597_INS [dm3] 3L_6482497_INS [dm6]	G	GTA	4.269e^-4	0.818	INTRON CG42747	TF binding site mE1_TFBS_inv
2R	14024205	2R_14024205_SNP [dm3] 2R_18136700_SNP [dm6]	G	A	4.281e^-4	0.818	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2210210	2L_2210210_DEL [dm3] 2L_2210210_DEL [dm6]	TT	T	4.287e^-4	0.818	UTR_3_PRIME CG15385
3R	24132412	3R_24132412_SNP [dm3] 3R_28306690_SNP [dm6]	C	T	4.296e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5423014	X_5423014_SNP [dm3] X_5528981_SNP [dm6]	C	G	4.300e^-4	0.818	UTR_3_PRIME Vsx2
3R	13604739	3R_13604739_SNP [dm3] 3R_17779017_SNP [dm6]	G	A	4.301e^-4	0.818	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
2R	7403779	2R_7403779_SNP [dm3] 2R_11516274_SNP [dm6]	G	T	4.303e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7403776	2R_7403776_SNP [dm3] 2R_11516271_SNP [dm6]	G	C	4.307e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	7941678	2L_7941678_SNP [dm3] 2L_7941678_SNP [dm6]	C	T	4.309e^-4	0.818	INTRON Snoo
X	19140855	X_19140855_SNP [dm3] X_19246822_SNP [dm6]	G	A	4.312e^-4	0.818	SYNONYMOUS_CODING CG7992	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1756913	3R_1756913_SNP [dm3] 3R_5931191_SNP [dm6]	T	A	4.313e^-4	0.818	INTRON CG34113
3R	21573660	3R_21573660_SNP [dm3] 3R_25747938_SNP [dm6]	G	A	4.313e^-4	0.818	INTRON LpR1
2R	1082915	2R_1082915_SNP [dm3] 2R_5195410_SNP [dm6]	A	G	4.325e^-4	0.818	SYNONYMOUS_CODING Nipped-A	TF binding site mE1_TFBS_inv
X	8680638	X_8680638_SNP [dm3] X_8786605_SNP [dm6]	G	A	4.326e^-4	0.818	INTRON Lim1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18169268	3R_18169268_DEL [dm3] 3R_22343546_DEL [dm6]	AGAGGCAACA	A	4.327e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10210919	3R_10210919_SNP [dm3] 3R_14385197_SNP [dm6]	G	C	4.331e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12633567	2R_12633567_SNP [dm3] 2R_16746062_SNP [dm6]	A	G	4.344e^-4	0.818	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7952367	2R_7952367_SNP [dm3] 2R_12064862_SNP [dm6]	G	A	4.345e^-4	0.818	UTR_3_PRIME CG8888
3L	11477852	3L_11477852_SNP [dm3] 3L_11484752_SNP [dm6]	G	A	4.345e^-4	0.818	INTERGENIC
2L	1141724	2L_1141724_SNP [dm3] 2L_1141724_SNP [dm6]	G	A	4.349e^-4	0.818	DOWNSTREAM CG4577 INTERGENIC
3R	6931991	3R_6931991_SNP [dm3] 3R_11106269_SNP [dm6]	A	C	4.351e^-4	0.818	INTERGENIC
2R	14131525	2R_14131525_SNP [dm3] 2R_18244020_SNP [dm6]	T	A	4.352e^-4	0.818	INTERGENIC
2R	14131532	2R_14131532_SNP [dm3] 2R_18244027_SNP [dm6]	T	A	4.352e^-4	0.818	INTERGENIC
3L	4695085	3L_4695085_SNP [dm3] 3L_4695085_SNP [dm6]	A	T	4.354e^-4	0.818	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14255884	3L_14255884_SNP [dm3] 3L_14262784_SNP [dm6]	T	A	4.354e^-4	0.818	INTERGENIC
2L	18251468	2L_18251468_SNP [dm3] 2L_18251468_SNP [dm6]	A	G	4.354e^-4	0.818	NON_SYNONYMOUS_CODING CG43406 INTRON CG42750
X	17678663	X_17678663_SNP [dm3] X_17784630_SNP [dm6]	T	C	4.356e^-4	0.818	INTERGENIC
3R	6931682	3R_6931682_SNP [dm3] 3R_11105960_SNP [dm6]	G	A	4.356e^-4	0.818	INTERGENIC
X	17680464	X_17680464_SNP [dm3] X_17786431_SNP [dm6]	G	A	4.359e^-4	0.818	INTERGENIC
2R	12868992	2R_12868992_SNP [dm3] 2R_16981487_SNP [dm6]	C	T	4.363e^-4	0.818	INTRON Cbp53E
2L	8534532	2L_8534532_SNP [dm3] 2L_8534532_SNP [dm6]	A	G	4.363e^-4	0.818	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	22220601	3R_22220601_SNP [dm3] 3R_26394879_SNP [dm6]	G	C	4.365e^-4	0.818	INTERGENIC
3L	4791964	3L_4791964_SNP [dm3] 3L_4791964_SNP [dm6]	C	T	4.366e^-4	0.818	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
X	1609628	X_1609628_SNP [dm3] X_1715595_SNP [dm6]	T	A	4.382e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17388065	3R_17388065_SNP [dm3] 3R_21562343_SNP [dm6]	G	A	4.383e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17388102	3R_17388102_SNP [dm3] 3R_21562380_SNP [dm6]	A	G	4.383e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17388387	3R_17388387_SNP [dm3] 3R_21562665_SNP [dm6]	G	A	4.383e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	17388443	3R_17388443_SNP [dm3] 3R_21562721_SNP [dm6]	C	A	4.383e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_inv
2L	19596618	2L_19596618_SNP [dm3] 2L_19596618_SNP [dm6]	C	T	4.385e^-4	0.818	INTRON Lar
2R	1371151	2R_1371151_SNP [dm3] 2R_5483646_SNP [dm6]	G	A	4.392e^-4	0.818	INTRON CG30440
2L	12154665	2L_12154665_SNP [dm3] 2L_12154665_SNP [dm6]	C	G	4.392e^-4	0.818	INTRON CG31760
2R	9011664	2R_9011664_SNP [dm3] 2R_13124159_SNP [dm6]	T	C	4.397e^-4	0.818	NON_SYNONYMOUS_CODING CG13325
2R	9015280	2R_9015280_SNP [dm3] 2R_13127775_SNP [dm6]	G	A	4.397e^-4	0.818	DOWNSTREAM CG3955 INTERGENIC
2R	9017025	2R_9017025_SNP [dm3] 2R_13129520_SNP [dm6]	A	T	4.397e^-4	0.818	UTR_3_PRIME CG13326 UPSTREAM CG3955	TF binding site mE1_TFBS_cad
2R	9023863	2R_9023863_SNP [dm3] 2R_13136358_SNP [dm6]	G	A	4.397e^-4	0.818	NON_SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2L	18276059	2L_18276059_SNP [dm3] 2L_18276059_SNP [dm6]	T	A	4.404e^-4	0.818	UPSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23600560	3R_23600560_DEL [dm3] 3R_27774838_DEL [dm6]	TT	T	4.408e^-4	0.818	INTRON CG34353
3R	23600564	3R_23600564_INS [dm3] 3R_27774842_INS [dm6]	T	TATTCCG	4.408e^-4	0.818	INTRON CG34353
2R	4035063	2R_4035063_SNP [dm3] 2R_8147558_SNP [dm6]	C	G	4.410e^-4	0.818	SYNONYMOUS_CODING kermit INTRON Lpin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20851275	3L_20851275_DEL [dm3] 3L_20858175_DEL [dm6]	GTT	G	4.415e^-4	0.818	INTRON CG32432

By genomic position
Variant impact
Gene name

Microbiota_OTU003 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results