DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.370e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.06987

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2119 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19997956	X_19997956_SNP [dm3] X_20103923_SNP [dm6]	G	A	1.211e^-6	0.629	INTERGENIC
2L	3766664	2L_3766664_SNP [dm3] 2L_3766664_SNP [dm6]	A	T	1.467e^-6	0.629	NON_SYNONYMOUS_CODING CG43707 UPSTREAM mir-1004 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
X	14541580	X_14541580_SNP [dm3] X_14647547_SNP [dm6]	T	C	1.845e^-6	0.629	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	22235824	X_22235824_DEL [dm3] X_22833988_DEL [dm6]	ATA	A	2.574e^-6	0.629	UPSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	3766716	2L_3766716_DEL [dm3] 2L_3766716_DEL [dm6]	AA	A	2.756e^-6	0.629	UPSTREAM mir-1004 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3R	8960769	3R_8960769_SNP [dm3] 3R_13135047_SNP [dm6]	G	A	2.809e^-6	0.629	INTRON timeout & 2 others
2L	3766861	2L_3766861_SNP [dm3] 2L_3766861_SNP [dm6]	C	A	2.916e^-6	0.629	UPSTREAM mir-1004 DOWNSTREAM CG43703 INTRON CG43707
2L	12558299	2L_12558299_SNP [dm3] 2L_12558299_SNP [dm6]	T	A	3.220e^-6	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8960679	3R_8960679_SNP [dm3] 3R_13134957_SNP [dm6]	A	T	3.332e^-6	0.629	INTRON timeout & 2 others
3R	8954375	3R_8954375_SNP [dm3] 3R_13128653_SNP [dm6]	C	A	4.001e^-6	0.629	INTRON timeout & 1 other
X	19997869	X_19997869_SNP [dm3] X_20103836_SNP [dm6]	G	A	4.020e^-6	0.629	INTERGENIC
X	18652688	X_18652688_SNP [dm3] X_18758655_SNP [dm6]	T	C	4.058e^-6	0.629	INTERGENIC
2L	8789505	2L_8789505_SNP [dm3] 2L_8789505_SNP [dm6]	A	G	5.814e^-6	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7126328	2R_7126328_SNP [dm3] 2R_11238823_SNP [dm6]	G	T	6.211e^-6	0.723	SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	8960634	3R_8960634_DEL [dm3] 3R_13134912_DEL [dm6]	TCACAATTT	T	6.304e^-6	0.723	INTRON timeout & 2 others
3R	17871549	3R_17871549_DEL [dm3] 3R_22045827_DEL [dm6]	ACTGCT	A	6.579e^-6	0.723	INTRON how	TF binding site BDTNP1_TFBS_twi
2R	18504922	2R_18504922_INS [dm3] 2R_22617417_INS [dm6]	T	TGGGAGCAT	7.167e^-6	0.723	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	8960669	3R_8960669_SNP [dm3] 3R_13134947_SNP [dm6]	A	G	7.304e^-6	0.723	INTRON timeout & 2 others
3L	8357024	3L_8357024_SNP [dm3] 3L_8363924_SNP [dm6]	C	A	7.380e^-6	0.723	INTERGENIC
3R	17333089	3R_17333089_SNP [dm3] 3R_21507367_SNP [dm6]	T	C	8.733e^-6	0.792	SPLICE_SITE_REGION C15 INTRON C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14206844	3L_14206844_SNP [dm3] 3L_14213744_SNP [dm6]	A	G	9.142e^-6	0.792	INTRON nuf
3R	8960670	3R_8960670_SNP [dm3] 3R_13134948_SNP [dm6]	A	G	9.873e^-6	0.792	INTRON timeout & 2 others
2L	12804498	2L_12804498_DEL [dm3] 2L_12804498_DEL [dm6]	TT	T	1.044e^-5	0.792	INTERGENIC
2L	20100126	2L_20100126_SNP [dm3] 2L_20100126_SNP [dm6]	T	G	1.246e^-5	0.792	INTRON Kua
2L	1861200	2L_1861200_SNP [dm3] 2L_1861200_SNP [dm6]	G	A	1.432e^-5	0.792	INTRON CG31663
X	22242287	X_22242287_SNP [dm3] X_22840451_SNP [dm6]	G	A	1.465e^-5	0.792	INTRON fog & 1 other
2L	3766924	2L_3766924_SNP [dm3] 2L_3766924_SNP [dm6]	A	T	1.477e^-5	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	5141534	2L_5141534_SNP [dm3] 2L_5141534_SNP [dm6]	T	A	1.567e^-5	0.792	INTRON Msp300	TF binding site mE1_TFBS_HSA
3R	17871557	3R_17871557_SNP [dm3] 3R_22045835_SNP [dm6]	A	T	1.569e^-5	0.792	INTRON how	TF binding site BDTNP1_TFBS_twi
3L	14206838	3L_14206838_SNP [dm3] 3L_14213738_SNP [dm6]	T	A	1.589e^-5	0.792	INTRON nuf
X	14538084	X_14538084_SNP [dm3] X_14644051_SNP [dm6]	A	T	1.690e^-5	0.792	INTRON NetA
3L	14206839	3L_14206839_SNP [dm3] 3L_14213739_SNP [dm6]	A	C	1.796e^-5	0.792	INTRON nuf
3R	27122929	3R_27122929_SNP [dm3] 3R_31297207_SNP [dm6]	C	G	1.805e^-5	0.792	INTERGENIC
3L	17551432	3L_17551432_SNP [dm3] 3L_17558332_SNP [dm6]	C	G	1.868e^-5	0.792	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12099275	2L_12099275_SNP [dm3] 2L_12099275_SNP [dm6]	A	T	1.915e^-5	0.792	SYNONYMOUS_CODING Ced-12	TF binding site mE1_TFBS_chinmo
3R	27164884	3R_27164884_SNP [dm3] 3R_31339162_SNP [dm6]	T	A	1.953e^-5	0.792	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21631228	3R_21631228_SNP [dm3] 3R_25805506_SNP [dm6]	A	C	2.024e^-5	0.792	UPSTREAM BG642167 INTERGENIC
3L	10830056	3L_10830056_SNP [dm3] 3L_10836956_SNP [dm6]	C	A	2.026e^-5	0.792	INTERGENIC
3R	17871235	3R_17871235_SNP [dm3] 3R_22045513_SNP [dm6]	C	G	2.063e^-5	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17871249	3R_17871249_SNP [dm3] 3R_22045527_SNP [dm6]	T	G	2.063e^-5	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16901982	X_16901982_SNP [dm3] X_17007949_SNP [dm6]	A	G	2.125e^-5	0.792	INTRON CG45002
X	22246215	X_22246215_SNP [dm3] X_22844379_SNP [dm6]	T	C	2.165e^-5	0.792	INTRON fog & 1 other	transposable element FlyBase
2L	2420815	2L_2420815_SNP [dm3] 2L_2420815_SNP [dm6]	G	C	2.273e^-5	0.792	UPSTREAM CG9886 & 1 other INTERGENIC
2L	2420681	2L_2420681_SNP [dm3] 2L_2420681_SNP [dm6]	C	A	2.572e^-5	0.792	UPSTREAM CG34447 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01
2L	3562491	2L_3562491_SNP [dm3] 2L_3562491_SNP [dm6]	A	T	2.640e^-5	0.792	DOWNSTREAM CR44747 EXON CR44309
2L	2420680	2L_2420680_SNP [dm3] 2L_2420680_SNP [dm6]	C	A	2.697e^-5	0.792	UPSTREAM CG34447 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01
2L	9152091	2L_9152091_INS [dm3] 2L_9152091_INS [dm6]	A	AAAGTAATATT...	2.708e^-5	0.792	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	2.738e^-5	0.792	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	2.738e^-5	0.792	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244378	2L_11244378_SNP [dm3] 2L_11244378_SNP [dm6]	A	T	2.738e^-5	0.792	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9152065	2L_9152065_SNP [dm3] 2L_9152065_SNP [dm6]	A	T	2.789e^-5	0.792	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
2R	20166720	2R_20166720_SNP [dm3] 2R_24279197_SNP [dm6]	C	G	2.798e^-5	0.792	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	2289650	2L_2289650_SNP [dm3] 2L_2289650_SNP [dm6]	C	A	2.876e^-5	0.792	UPSTREAM CG17237 DOWNSTREAM robl22E INTERGENIC
2R	13383563	2R_13383563_SNP [dm3] 2R_17496058_SNP [dm6]	A	T	2.907e^-5	0.792	DOWNSTREAM CG30103 INTERGENIC
3R	17871262	3R_17871262_SNP [dm3] 3R_22045540_SNP [dm6]	T	A	2.929e^-5	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17550217	3L_17550217_SNP [dm3] 3L_17557117_SNP [dm6]	G	A	2.950e^-5	0.792	UTR_5_PRIME CycT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	8985034	3R_8985034_SNP [dm3] 3R_13159312_SNP [dm6]	T	G	2.964e^-5	0.792	INTRON timeout
2L	12384172	2L_12384172_SNP [dm3] 2L_12384172_SNP [dm6]	C	A	3.234e^-5	0.792	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9914472	X_9914472_SNP [dm3] X_10020439_SNP [dm6]	T	C	3.253e^-5	0.792	INTRON Cht6
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	3.263e^-5	0.792	UPSTREAM CG32687 INTERGENIC
2L	12804007	2L_12804007_SNP [dm3] 2L_12804007_SNP [dm6]	G	T	3.318e^-5	0.792	INTERGENIC
2L	12384183	2L_12384183_SNP [dm3] 2L_12384183_SNP [dm6]	G	T	3.605e^-5	0.792	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5119239	3R_5119239_SNP [dm3] 3R_9293517_SNP [dm6]	G	A	3.893e^-5	0.792	DOWNSTREAM CG8861 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4309389	3L_4309389_SNP [dm3] 3L_4309389_SNP [dm6]	T	G	3.897e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18240674	3R_18240674_SNP [dm3] 3R_22414952_SNP [dm6]	T	A	3.960e^-5	0.792	SYNONYMOUS_CODING lqfR INTRON lqfR	TF binding site mE1_TFBS_cad
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	3.985e^-5	0.792	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	1364975	2R_1364975_SNP [dm3] 2R_5477470_SNP [dm6]	A	G	4.100e^-5	0.792	INTRON CG30440
3R	26432868	3R_26432868_SNP [dm3] 3R_30607146_SNP [dm6]	G	A	4.151e^-5	0.792	NON_SYNONYMOUS_CODING CG31016	TF binding site mE1_TFBS_HSA
2L	10800719	2L_10800719_SNP [dm3] 2L_10800719_SNP [dm6]	A	T	4.158e^-5	0.792	UTR_5_PRIME CG31869 DOWNSTREAM CR44581
2L	13123193	2L_13123193_SNP [dm3] 2L_13123193_SNP [dm6]	G	A	4.162e^-5	0.792	INTERGENIC
3L	3948230	3L_3948230_SNP [dm3] 3L_3948230_SNP [dm6]	A	T	4.209e^-5	0.792	NON_SYNONYMOUS_CODING CG10853 DOWNSTREAM CG14982 & 1 other
2L	14537178	2L_14537178_SNP [dm3] 2L_14537178_SNP [dm6]	A	G	4.251e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15833857	3R_15833857_SNP [dm3] 3R_20008135_SNP [dm6]	A	T	4.328e^-5	0.792	UPSTREAM MED25 INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20617	3R_20617_SNP [dm3] 3R_4194895_SNP [dm6]	T	G	4.428e^-5	0.792	INTRON CR33294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13248987	3L_13248987_SNP [dm3] 3L_13255887_SNP [dm6]	T	A	4.466e^-5	0.792	INTRON caps
3R	19007077	3R_19007077_SNP [dm3] 3R_23181355_SNP [dm6]	A	G	4.567e^-5	0.792	UPSTREAM Irk1 INTRON Irk1
2L	2789832	2L_2789832_SNP [dm3] 2L_2789832_SNP [dm6]	G	C	4.582e^-5	0.792	UTR_3_PRIME Syt1 INTRON Syt1
3R	27135758	3R_27135758_INS [dm3] 3R_31310036_INS [dm6]	A	ACTGCTGCG	4.746e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	22245290	X_22245290_SNP [dm3] X_22843454_SNP [dm6]	T	G	4.751e^-5	0.792	INTRON fog & 1 other	transposable element FlyBase
3R	18241721	3R_18241721_SNP [dm3] 3R_22415999_SNP [dm6]	T	G	4.788e^-5	0.792	SYNONYMOUS_CODING lqfR INTRON lqfR
3R	18241724	3R_18241724_SNP [dm3] 3R_22416002_SNP [dm6]	C	T	4.788e^-5	0.792	SYNONYMOUS_CODING lqfR INTRON lqfR
3R	18241757	3R_18241757_SNP [dm3] 3R_22416035_SNP [dm6]	T	A	4.788e^-5	0.792	NON_SYNONYMOUS_CODING lqfR INTRON lqfR
2L	20097212	2L_20097212_INS [dm3] 2L_20097212_INS [dm6]	C	CC	4.868e^-5	0.792	UTR_5_PRIME mRpS18B UPSTREAM Kua DOWNSTREAM nesd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	9914481	X_9914481_SNP [dm3] X_10020448_SNP [dm6]	A	T	4.885e^-5	0.792	INTRON Cht6
X	22203252	X_22203252_DEL [dm3] X_22801416_DEL [dm6]	AA	A	4.915e^-5	0.792	INTERGENIC
X	22203256	X_22203256_DEL [dm3] X_22801420_DEL [dm6]	ATA	A	4.915e^-5	0.792	INTERGENIC
3L	10039434	3L_10039434_SNP [dm3] 3L_10046334_SNP [dm6]	A	G	5.000e^-5	0.792	INTRON dpr6
2L	1091833	2L_1091833_SNP [dm3] 2L_1091833_SNP [dm6]	A	G	5.000e^-5	0.792	INTRON CG4629
3L	3790076	3L_3790076_SNP [dm3] 3L_3790076_SNP [dm6]	C	T	5.023e^-5	0.792	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7524871	2L_7524871_SNP [dm3] 2L_7524871_SNP [dm6]	T	C	5.073e^-5	0.792	INTRON RapGAP1
2L	12558335	2L_12558335_SNP [dm3] 2L_12558335_SNP [dm6]	G	C	5.075e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23434542	3R_23434542_SNP [dm3] 3R_27608820_SNP [dm6]	C	G	5.118e^-5	0.792	INTRON Tusp	TF binding site mE1_TFBS_HSA
X	22360316	X_22360316_SNP [dm3] X_22958480_SNP [dm6]	C	A	5.140e^-5	0.792	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10278999	3R_10278999_SNP [dm3] 3R_14453277_SNP [dm6]	A	G	5.201e^-5	0.792	INTRON cv-c	TF binding site mE1_TFBS_inv
X	6435691	X_6435691_SNP [dm3] X_6541658_SNP [dm6]	T	C	5.254e^-5	0.792	INTRON CG34417
3L	24300131	3L_24300131_SNP [dm3] 3L_24307031_SNP [dm6]	T	C	5.300e^-5	0.792	INTERGENIC
2R	14750486	2R_14750486_SNP [dm3] 2R_18862981_SNP [dm6]	T	A	5.312e^-5	0.792	SYNONYMOUS_CODING CG43069 UPSTREAM Jheh3 & 1 other
3L	5936907	3L_5936907_SNP [dm3] 3L_5943807_SNP [dm6]	C	A	5.346e^-5	0.792	INTRON CG33993
2L	21051991	2L_21051991_SNP [dm3] 2L_21051991_SNP [dm6]	A	G	5.358e^-5	0.792	UTR_5_PRIME CG42238 UPSTREAM CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13679051	3L_13679051_SNP [dm3] 3L_13685951_SNP [dm6]	C	T	5.477e^-5	0.792	INTRON bru-3
3R	18240842	3R_18240842_SNP [dm3] 3R_22415120_SNP [dm6]	G	A	5.512e^-5	0.792	SYNONYMOUS_CODING lqfR INTRON lqfR	TF binding site mE1_TFBS_cad
2L	5240670	2L_5240670_SNP [dm3] 2L_5240670_SNP [dm6]	G	A	5.517e^-5	0.792	UPSTREAM tRNA:CR31971 DOWNSTREAM tRNA:CR31914 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	3766864	2L_3766864_SNP [dm3] 2L_3766864_SNP [dm6]	C	T	5.525e^-5	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	3766902	2L_3766902_SNP [dm3] 2L_3766902_SNP [dm6]	A	T	5.529e^-5	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	20251764	2L_20251764_SNP [dm3] 2L_20251764_SNP [dm6]	G	A	5.575e^-5	0.792	INTERGENIC
2L	3766877	2L_3766877_SNP [dm3] 2L_3766877_SNP [dm6]	T	A	5.599e^-5	0.792	UPSTREAM mir-1004 INTRON CG43707
3R	22469164	3R_22469164_INS [dm3] 3R_26643442_INS [dm6]	A	ACA	5.670e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	19968993	3R_19968993_SNP [dm3] 3R_24143271_SNP [dm6]	A	G	5.766e^-5	0.792	INTRON Kal1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5894878	X_5894878_SNP [dm3] X_6000845_SNP [dm6]	A	T	5.829e^-5	0.792	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4803821	2R_4803821_SNP [dm3] 2R_8916316_SNP [dm6]	G	A	5.838e^-5	0.792	NON_SYNONYMOUS_CODING lin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19007082	3R_19007082_SNP [dm3] 3R_23181360_SNP [dm6]	A	T	5.857e^-5	0.792	UPSTREAM Irk1 INTRON Irk1
3R	17872385	3R_17872385_SNP [dm3] 3R_22046663_SNP [dm6]	T	C	5.879e^-5	0.792	INTRON how	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8660462	2L_8660462_SNP [dm3] 2L_8660462_SNP [dm6]	C	T	6.116e^-5	0.792	SYNONYMOUS_CODING Sema-1a
2R	9273581	2R_9273581_SNP [dm3] 2R_13386076_SNP [dm6]	G	A	6.187e^-5	0.792	INTERGENIC
2L	3407041	2L_3407041_SNP [dm3] 2L_3407041_SNP [dm6]	C	T	6.264e^-5	0.792	SYNONYMOUS_CODING pgant2
2L	3407186	2L_3407186_SNP [dm3] 2L_3407186_SNP [dm6]	T	A	6.264e^-5	0.792	INTRON pgant2
2L	3407424	2L_3407424_SNP [dm3] 2L_3407424_SNP [dm6]	T	A	6.264e^-5	0.792	INTRON pgant2
2L	3408617	2L_3408617_SNP [dm3] 2L_3408617_SNP [dm6]	A	C	6.264e^-5	0.792	INTRON pgant2
2L	3408619	2L_3408619_SNP [dm3] 2L_3408619_SNP [dm6]	A	G	6.264e^-5	0.792	INTRON pgant2
2L	3408634	2L_3408634_SNP [dm3] 2L_3408634_SNP [dm6]	T	G	6.264e^-5	0.792	INTRON pgant2
2L	2852346	2L_2852346_SNP [dm3] 2L_2852346_SNP [dm6]	G	A	6.292e^-5	0.792	INTRON CG3104
2L	10171328	2L_10171328_SNP [dm3] 2L_10171328_SNP [dm6]	T	C	6.292e^-5	0.792	INTRON CG44153
X	21329531	X_21329531_SNP [dm3] X_21458504_SNP [dm6]	A	G	6.315e^-5	0.792	UPSTREAM CG42343 INTERGENIC
3R	4291683	3R_4291683_SNP [dm3] 3R_8465961_SNP [dm6]	C	A	6.351e^-5	0.792	INTRON CG45263	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18504707	2R_18504707_DEL [dm3] 2R_22617202_DEL [dm6]	CC	C	6.356e^-5	0.792	INTRON CG33143	TF binding site mE1_TFBS_cad
2R	7835687	2R_7835687_SNP [dm3] 2R_11948182_SNP [dm6]	C	T	6.362e^-5	0.792	INTRON CG13188
3L	3393574	3L_3393574_SNP [dm3] 3L_3393574_SNP [dm6]	A	T	6.427e^-5	0.792	UPSTREAM CR45737 INTERGENIC
3L	3393579	3L_3393579_SNP [dm3] 3L_3393579_SNP [dm6]	A	G	6.427e^-5	0.792	UPSTREAM CR45737 INTERGENIC
3R	17871201	3R_17871201_SNP [dm3] 3R_22045479_SNP [dm6]	A	C	6.561e^-5	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21572565	3R_21572565_SNP [dm3] 3R_25746843_SNP [dm6]	A	T	6.595e^-5	0.792	INTRON LpR1
2L	8782676	2L_8782676_SNP [dm3] 2L_8782676_SNP [dm6]	C	A	6.602e^-5	0.792	UPSTREAM CG42710 INTERGENIC
X	22242733	X_22242733_DEL [dm3] X_22840897_DEL [dm6]	TAT	T	6.712e^-5	0.792	INTRON fog & 1 other
2L	1095170	2L_1095170_SNP [dm3] 2L_1095170_SNP [dm6]	C	G	6.729e^-5	0.792	INTRON CG4629
2L	6490496	2L_6490496_SNP [dm3] 2L_6490496_SNP [dm6]	T	G	6.730e^-5	0.792	SYNONYMOUS_CODING CG9548 UPSTREAM CG31638 DOWNSTREAM epsilonCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16843949	2R_16843949_SNP [dm3] 2R_20956444_SNP [dm6]	C	T	6.778e^-5	0.792	INTRON hbn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17693036	3L_17693036_SNP [dm3] 3L_17699936_SNP [dm6]	C	T	6.980e^-5	0.792	INTRON Ccn
2L	9234885	2L_9234885_SNP [dm3] 2L_9234885_SNP [dm6]	G	A	7.004e^-5	0.792	INTRON tai	TF binding site mE1_TFBS_inv
3L	4355952	3L_4355952_SNP [dm3] 3L_4355952_SNP [dm6]	C	T	7.009e^-5	0.792	INTRON Cip4
2R	4143859	2R_4143859_SNP [dm3] 2R_8256354_SNP [dm6]	G	T	7.015e^-5	0.792	NON_SYNONYMOUS_CODING CG14760	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18270580	3L_18270580_SNP [dm3] 3L_18277480_SNP [dm6]	T	C	7.219e^-5	0.792	INTERGENIC
3L	18270581	3L_18270581_SNP [dm3] 3L_18277481_SNP [dm6]	C	T	7.219e^-5	0.792	INTERGENIC
X	5828599	X_5828599_INS [dm3] X_5934566_INS [dm6]	A	AA	7.223e^-5	0.792	INTRON CG3726
3R	19968942	3R_19968942_SNP [dm3] 3R_24143220_SNP [dm6]	T	C	7.238e^-5	0.792	INTRON Kal1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8757072	2L_8757072_SNP [dm3] 2L_8757072_SNP [dm6]	C	T	7.275e^-5	0.792	INTERGENIC
2L	6490258	2L_6490258_SNP [dm3] 2L_6490258_SNP [dm6]	T	A	7.307e^-5	0.792	UPSTREAM CG31638 DOWNSTREAM epsilonCOP INTRON CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4652778	2L_4652778_SNP [dm3] 2L_4652778_SNP [dm6]	T	C	7.312e^-5	0.792	UTR_3_PRIME CG3355
2L	8149800	2L_8149800_SNP [dm3] 2L_8149800_SNP [dm6]	T	C	7.362e^-5	0.792	INTRON CG8552 & 1 other
2L	11370376	2L_11370376_SNP [dm3] 2L_11370376_SNP [dm6]	G	A	7.367e^-5	0.792	INTRON salr
2L	1095614	2L_1095614_DEL [dm3] 2L_1095614_DEL [dm6]	TCTGGCGT	T	7.377e^-5	0.792	INTRON CG4629
2L	9397372	2L_9397372_SNP [dm3] 2L_9397372_SNP [dm6]	C	T	7.380e^-5	0.792	SYNONYMOUS_CODING CG4438 INTRON Shawl
2R	10218707	2R_10218707_SNP [dm3] 2R_14331202_SNP [dm6]	G	A	7.401e^-5	0.792	INTRON Shroom
3L	18195754	3L_18195754_SNP [dm3] 3L_18202654_SNP [dm6]	A	T	7.442e^-5	0.792	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_sens
2L	12806213	2L_12806213_SNP [dm3] 2L_12806213_SNP [dm6]	A	G	7.446e^-5	0.792	INTERGENIC
2R	18433267	2R_18433267_DEL [dm3] 2R_22545762_DEL [dm6]	CATTTCTC	C	7.628e^-5	0.792	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15858133	2L_15858133_DEL [dm3] 2L_15858133_DEL [dm6]	ATCGCA	A	7.653e^-5	0.792	INTERGENIC
2R	11344869	2R_11344869_SNP [dm3] 2R_15457364_SNP [dm6]	C	T	7.654e^-5	0.792	INTRON CG43729
2L	10171408	2L_10171408_SNP [dm3] 2L_10171408_SNP [dm6]	G	T	7.738e^-5	0.792	INTRON CG44153
X	22242915	X_22242915_SNP [dm3] X_22841079_SNP [dm6]	C	G	7.758e^-5	0.792	INTRON fog & 1 other
2L	12195257	2L_12195257_DEL [dm3] 2L_12195257_DEL [dm6]	TGTT	T	7.820e^-5	0.792	INTRON aret
3R	16383345	3R_16383345_DEL [dm3] 3R_20557623_DEL [dm6]	GG	G	7.897e^-5	0.792	UTR_5_PRIME att-ORFA UPSTREAM CG5180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	6435687	X_6435687_SNP [dm3] X_6541654_SNP [dm6]	A	G	7.898e^-5	0.792	INTRON CG34417
2R	7122269	2R_7122269_SNP [dm3] 2R_11234764_SNP [dm6]	C	T	8.033e^-5	0.792	UPSTREAM CG13227 DOWNSTREAM CG13228 INTERGENIC
3L	13091611	3L_13091611_SNP [dm3] 3L_13098511_SNP [dm6]	C	G	8.087e^-5	0.792	INTERGENIC
2L	5897996	2L_5897996_SNP [dm3] 2L_5897996_SNP [dm6]	C	A	8.242e^-5	0.792	INTERGENIC
2L	5898006	2L_5898006_SNP [dm3] 2L_5898006_SNP [dm6]	G	T	8.242e^-5	0.792	INTERGENIC
3L	9234080	3L_9234080_SNP [dm3] 3L_9240980_SNP [dm6]	T	C	8.242e^-5	0.792	INTERGENIC
3L	9234167	3L_9234167_SNP [dm3] 3L_9241067_SNP [dm6]	T	A	8.242e^-5	0.792	INTERGENIC
3L	9234250	3L_9234250_SNP [dm3] 3L_9241150_SNP [dm6]	T	A	8.242e^-5	0.792	INTERGENIC
3L	9234403	3L_9234403_SNP [dm3] 3L_9241303_SNP [dm6]	A	G	8.242e^-5	0.792	INTERGENIC
3L	9237249	3L_9237249_SNP [dm3] 3L_9244149_SNP [dm6]	T	C	8.242e^-5	0.792	INTERGENIC
3L	9237571	3L_9237571_SNP [dm3] 3L_9244471_SNP [dm6]	T	A	8.242e^-5	0.792	INTERGENIC
3L	10907415	3L_10907415_SNP [dm3] 3L_10914315_SNP [dm6]	T	C	8.251e^-5	0.792	INTERGENIC
3R	8830398	3R_8830398_DEL [dm3] 3R_13004676_DEL [dm6]	CCACCGCCTG	C	8.278e^-5	0.792		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2906070	2L_2906070_SNP [dm3] 2L_2906070_SNP [dm6]	A	G	8.286e^-5	0.792	INTRON lilli
3R	59051	3R_59051_SNP [dm3] 3R_4233329_SNP [dm6]	G	A	8.393e^-5	0.792	SYNONYMOUS_CODING abs UPSTREAM CG14641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10045477	3L_10045477_SNP [dm3] 3L_10052377_SNP [dm6]	A	G	8.421e^-5	0.792	INTRON dpr6
3L	3393554	3L_3393554_SNP [dm3] 3L_3393554_SNP [dm6]	T	G	8.461e^-5	0.792	UPSTREAM CR45737 INTERGENIC
3L	19171017	3L_19171017_SNP [dm3] 3L_19177917_SNP [dm6]	G	A	8.503e^-5	0.792	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3766893	2L_3766893_SNP [dm3] 2L_3766893_SNP [dm6]	G	T	8.544e^-5	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	2520759	2L_2520759_SNP [dm3] 2L_2520759_SNP [dm6]	A	C	8.580e^-5	0.792	INTERGENIC
3L	2545598	3L_2545598_SNP [dm3] 3L_2545598_SNP [dm6]	A	G	8.651e^-5	0.792	INTRON Spn
X	22245510	X_22245510_SNP [dm3] X_22843674_SNP [dm6]	C	T	8.691e^-5	0.792	INTRON fog & 1 other
X	22277431	X_22277431_SNP [dm3] X_22875595_SNP [dm6]	T	C	8.714e^-5	0.792	DOWNSTREAM CG34334 INTRON CG42346
3R	13270724	3R_13270724_SNP [dm3] 3R_17445002_SNP [dm6]	C	T	8.726e^-5	0.792	SYNONYMOUS_CODING CG5873
X	16221061	X_16221061_SNP [dm3] X_16327028_SNP [dm6]	C	T	8.834e^-5	0.792	SYNONYMOUS_CODING CalpC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22246985	X_22246985_SNP [dm3] X_22845149_SNP [dm6]	T	G	8.861e^-5	0.792	INTRON fog & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14326578	3R_14326578_SNP [dm3] 3R_18500856_SNP [dm6]	T	C	8.911e^-5	0.792	INTRON fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3628977	2L_3628977_SNP [dm3] 2L_3628977_SNP [dm6]	A	G	8.991e^-5	0.792	INTRON for	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22469013	3R_22469013_SNP [dm3] 3R_26643291_SNP [dm6]	T	G	9.009e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	22469023	3R_22469023_SNP [dm3] 3R_26643301_SNP [dm6]	G	A	9.009e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	14750041	2R_14750041_SNP [dm3] 2R_18862536_SNP [dm6]	G	A	9.049e^-5	0.792	UPSTREAM CG43069 & 1 other INTERGENIC
2L	12167574	2L_12167574_SNP [dm3] 2L_12167574_SNP [dm6]	G	C	9.059e^-5	0.792	DOWNSTREAM ZnT33D INTRON CG31760
X	19997978	X_19997978_SNP [dm3] X_20103945_SNP [dm6]	C	T	9.063e^-5	0.792	INTERGENIC
2L	8758176	2L_8758176_SNP [dm3] 2L_8758176_SNP [dm6]	T	A	9.126e^-5	0.792	INTERGENIC
3R	22468962	3R_22468962_SNP [dm3] 3R_26643240_SNP [dm6]	A	C	9.180e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	15955065	2L_15955065_SNP [dm3] 2L_15955065_SNP [dm6]	C	G	9.190e^-5	0.792	INTRON beat-Ib
3R	14703169	3R_14703169_SNP [dm3] 3R_18877447_SNP [dm6]	A	T	9.205e^-5	0.792	DOWNSTREAM CG14298 INTERGENIC
2L	20425158	2L_20425158_SNP [dm3] 2L_20425158_SNP [dm6]	A	T	9.214e^-5	0.792	UPSTREAM CG15130 INTERGENIC
2L	20239018	2L_20239018_SNP [dm3] 2L_20239018_SNP [dm6]	G	C	9.224e^-5	0.792	INTERGENIC
X	9410139	X_9410139_SNP [dm3] X_9516106_SNP [dm6]	A	T	9.232e^-5	0.792	INTRON CG32700
3L	14224954	3L_14224954_SNP [dm3] 3L_14231854_SNP [dm6]	T	A	9.492e^-5	0.792	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14230846	3L_14230846_SNP [dm3] 3L_14237746_SNP [dm6]	C	T	9.492e^-5	0.792	NON_SYNONYMOUS_CODING CG7906 DOWNSTREAM CR45399
3L	14231052	3L_14231052_SNP [dm3] 3L_14237952_SNP [dm6]	C	T	9.492e^-5	0.792	SYNONYMOUS_CODING CG7906 DOWNSTREAM CR45399
3R	27171172	3R_27171172_SNP [dm3] 3R_31345450_SNP [dm6]	A	T	9.589e^-5	0.792	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8960745	3R_8960745_SNP [dm3] 3R_13135023_SNP [dm6]	T	C	9.744e^-5	0.792	INTRON timeout & 2 others
3L	9237413	3L_9237413_SNP [dm3] 3L_9244313_SNP [dm6]	C	T	9.817e^-5	0.792	INTERGENIC
2L	1641729	2L_1641729_SNP [dm3] 2L_1641729_SNP [dm6]	A	T	9.933e^-5	0.792	INTERGENIC
3R	27139171	3R_27139171_SNP [dm3] 3R_31313449_SNP [dm6]	C	T	9.978e^-5	0.792	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14391008	3R_14391008_SNP [dm3] 3R_18565286_SNP [dm6]	C	A	1.005e^-4	0.792	UPSTREAM CG43210 & 1 other INTERGENIC
3R	15119201	3R_15119201_INS [dm3] 3R_19293479_INS [dm6]	A	ACTGTTAAGT	1.005e^-4	0.792	INTERGENIC
2R	18504681	2R_18504681_SNP [dm3] 2R_22617176_SNP [dm6]	A	G	1.019e^-4	0.792	INTRON CG33143	TF binding site mE1_TFBS_cad
3L	5357160	3L_5357160_SNP [dm3] 3L_5364060_SNP [dm6]	C	A	1.026e^-4	0.792	INTRON Uev1A
3L	17263466	3L_17263466_SNP [dm3] 3L_17270366_SNP [dm6]	C	A	1.027e^-4	0.792	INTERGENIC
3R	21831115	3R_21831115_SNP [dm3] 3R_26005393_SNP [dm6]	C	A	1.031e^-4	0.792	SYNONYMOUS_CODING E_spl_mbeta-HLH DOWNSTREAM CR45038	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	4220898	2L_4220898_SNP [dm3] 2L_4220898_SNP [dm6]	T	C	1.032e^-4	0.792	INTRON ft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	9511690	3R_9511690_SNP [dm3] 3R_13685968_SNP [dm6]	T	A	1.032e^-4	0.792	INTRON omd & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	10310694	2R_10310694_SNP [dm3] 2R_14423189_SNP [dm6]	T	C	1.034e^-4	0.792	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8757006	2L_8757006_SNP [dm3] 2L_8757006_SNP [dm6]	A	G	1.036e^-4	0.792	INTERGENIC
2L	3766903	2L_3766903_SNP [dm3] 2L_3766903_SNP [dm6]	C	T	1.036e^-4	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	20239024	2L_20239024_SNP [dm3] 2L_20239024_SNP [dm6]	T	A	1.044e^-4	0.792	INTERGENIC
2L	1095199	2L_1095199_SNP [dm3] 2L_1095199_SNP [dm6]	C	T	1.054e^-4	0.792	INTRON CG4629
3L	5569719	3L_5569719_SNP [dm3] 3L_5576619_SNP [dm6]	A	C	1.069e^-4	0.792	INTRON Msr-110
2R	11049925	2R_11049925_INS [dm3] 2R_15162420_INS [dm6]	A	AA	1.070e^-4	0.792	INTRON igl	TF binding site mE1_TFBS_inv
3L	1725358	3L_1725358_SNP [dm3] 3L_1725358_SNP [dm6]	C	T	1.075e^-4	0.792	SYNONYMOUS_CODING CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	27281308	3R_27281308_SNP [dm3] 3R_31455586_SNP [dm6]	C	T	1.076e^-4	0.792	SYNONYMOUS_CODING Gprk2	TF binding site mE1_TFBS_cad
3L	3948209	3L_3948209_SNP [dm3] 3L_3948209_SNP [dm6]	C	T	1.082e^-4	0.792	SYNONYMOUS_CODING CG10853 DOWNSTREAM CG14982 & 1 other
X	14539381	X_14539381_SNP [dm3] X_14645348_SNP [dm6]	A	C	1.085e^-4	0.792	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	5828329	X_5828329_SNP [dm3] X_5934296_SNP [dm6]	C	T	1.085e^-4	0.792	INTRON CG3726
3R	8870643	3R_8870643_DEL [dm3] 3R_13044921_DEL [dm6]	ATATTCAGCATAAGGCGA...	A	1.087e^-4	0.792	UTR_5_PRIME Hsc70-2 DOWNSTREAM CG11670 & 1 other
3L	13271226	3L_13271226_SNP [dm3] 3L_13278126_SNP [dm6]	G	A	1.088e^-4	0.792	UTR_3_PRIME caps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15074964	3R_15074964_SNP [dm3] 3R_19249242_SNP [dm6]	T	C	1.093e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	17512421	2L_17512421_SNP [dm3] 2L_17512421_SNP [dm6]	T	G	1.095e^-4	0.792	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_chinmo
3L	13271228	3L_13271228_SNP [dm3] 3L_13278128_SNP [dm6]	G	A	1.098e^-4	0.792	UTR_3_PRIME caps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22469021	3R_22469021_SNP [dm3] 3R_26643299_SNP [dm6]	A	T	1.100e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	10288223	2R_10288223_SNP [dm3] 2R_14400718_SNP [dm6]	A	G	1.101e^-4	0.792	INTERGENIC
2R	10218704	2R_10218704_SNP [dm3] 2R_14331199_SNP [dm6]	C	T	1.103e^-4	0.792	INTRON Shroom
2L	2420545	2L_2420545_SNP [dm3] 2L_2420545_SNP [dm6]	A	C	1.112e^-4	0.792	UPSTREAM CG34447 & 1 other INTERGENIC
3R	14391012	3R_14391012_SNP [dm3] 3R_18565290_SNP [dm6]	G	A	1.129e^-4	0.792	UPSTREAM CG43210 & 1 other INTERGENIC
3L	14230186	3L_14230186_SNP [dm3] 3L_14237086_SNP [dm6]	A	G	1.138e^-4	0.792	NON_SYNONYMOUS_CODING CG7906	TF binding site mE1_TFBS_inv
2R	7779137	2R_7779137_SNP [dm3] 2R_11891632_SNP [dm6]	G	T	1.143e^-4	0.792	UPSTREAM ERp60 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	15373560	2L_15373560_SNP [dm3] 2L_15373560_SNP [dm6]	A	G	1.145e^-4	0.792	INTERGENIC
X	10012243	X_10012243_SNP [dm3] X_10118210_SNP [dm6]	G	A	1.157e^-4	0.792	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11423755	2L_11423755_SNP [dm3] 2L_11423755_SNP [dm6]	C	G	1.167e^-4	0.792	INTERGENIC
2L	1095557	2L_1095557_SNP [dm3] 2L_1095557_SNP [dm6]	G	A	1.175e^-4	0.792	INTRON CG4629
2L	8887995	2L_8887995_SNP [dm3] 2L_8887995_SNP [dm6]	C	A	1.180e^-4	0.792	EXON CR44415	TF binding site mE1_TFBS_cad
3R	8960456	3R_8960456_SNP [dm3] 3R_13134734_SNP [dm6]	C	T	1.186e^-4	0.792	INTRON timeout & 2 others
3L	19889035	3L_19889035_SNP [dm3] 3L_19895935_SNP [dm6]	T	C	1.212e^-4	0.792	INTRON Mi-2 & 1 other EXON CR32218	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1363802	2R_1363802_SNP [dm3] 2R_5476297_SNP [dm6]	A	C	1.214e^-4	0.792	INTRON CG30440	transposable element FlyBase
X	8700341	X_8700341_SNP [dm3] X_8806308_SNP [dm6]	A	T	1.225e^-4	0.792	UPSTREAM Lim1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7169466	3R_7169466_SNP [dm3] 3R_11343744_SNP [dm6]	T	C	1.249e^-4	0.792	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	14229360	3L_14229360_SNP [dm3] 3L_14236260_SNP [dm6]	C	T	1.250e^-4	0.792	UPSTREAM CG7906 & 1 other INTERGENIC
2L	13235534	2L_13235534_INS [dm3] 2L_13235534_INS [dm6]	G	GCCAA	1.252e^-4	0.792	UPSTREAM CG15479 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3683804	2L_3683804_SNP [dm3] 2L_3683804_SNP [dm6]	C	T	1.259e^-4	0.792	INTRON CG34340
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	1.265e^-4	0.792	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
2L	5287695	2L_5287695_INS [dm3] 2L_5287695_INS [dm6]	A	AGAATGGAAA	1.265e^-4	0.792	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
2L	5287697	2L_5287697_SNP [dm3] 2L_5287697_SNP [dm6]	T	A	1.265e^-4	0.792	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
2L	5287698	2L_5287698_SNP [dm3] 2L_5287698_SNP [dm6]	C	T	1.265e^-4	0.792	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
3L	2650109	3L_2650109_SNP [dm3] 3L_2650109_SNP [dm6]	C	T	1.265e^-4	0.792	UTR_3_PRIME CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3L	2654335	3L_2654335_SNP [dm3] 3L_2654335_SNP [dm6]	G	A	1.265e^-4	0.792	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
3L	2656081	3L_2656081_SNP [dm3] 3L_2656081_SNP [dm6]	A	G	1.265e^-4	0.792	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2656894	3L_2656894_SNP [dm3] 3L_2656894_SNP [dm6]	A	G	1.265e^-4	0.792	UTR_3_PRIME Fife
3L	2657138	3L_2657138_SNP [dm3] 3L_2657138_SNP [dm6]	C	T	1.265e^-4	0.792	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
3L	2657275	3L_2657275_SNP [dm3] 3L_2657275_SNP [dm6]	A	G	1.265e^-4	0.792	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
3L	2657692	3L_2657692_SNP [dm3] 3L_2657692_SNP [dm6]	C	T	1.265e^-4	0.792	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	2658000	3L_2658000_SNP [dm3] 3L_2658000_SNP [dm6]	G	A	1.265e^-4	0.792	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2631618	3L_2631618_SNP [dm3] 3L_2631618_SNP [dm6]	A	T	1.269e^-4	0.792	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	2655458	3L_2655458_SNP [dm3] 3L_2655458_SNP [dm6]	T	C	1.276e^-4	0.792	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
2R	7126766	2R_7126766_SNP [dm3] 2R_11239261_SNP [dm6]	G	A	1.277e^-4	0.792	UPSTREAM CG13216 DOWNSTREAM CG13215 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2658002	3L_2658002_SNP [dm3] 3L_2658002_SNP [dm6]	T	A	1.282e^-4	0.792	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	22276333	X_22276333_SNP [dm3] X_22874497_SNP [dm6]	T	C	1.289e^-4	0.792	SYNONYMOUS_CODING CG34334 INTRON CG42346	TF binding site mE1_TFBS_chinmo
2R	10288224	2R_10288224_SNP [dm3] 2R_14400719_SNP [dm6]	C	T	1.295e^-4	0.792	INTERGENIC
X	16058632	X_16058632_SNP [dm3] X_16164599_SNP [dm6]	T	C	1.298e^-4	0.792	INTERGENIC
3R	19007196	3R_19007196_SNP [dm3] 3R_23181474_SNP [dm6]	C	T	1.301e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
X	22245284	X_22245284_SNP [dm3] X_22843448_SNP [dm6]	G	T	1.301e^-4	0.792	INTRON fog & 1 other	transposable element FlyBase
3L	4226942	3L_4226942_SNP [dm3] 3L_4226942_SNP [dm6]	G	A	1.302e^-4	0.792	UTR_5_PRIME ImpL2 UPSTREAM ImpL2 INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14117954	X_14117954_SNP [dm3] X_14223921_SNP [dm6]	C	T	1.307e^-4	0.792	SYNONYMOUS_CODING l_1_G0007 DOWNSTREAM CG11674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10315145	2R_10315145_SNP [dm3] 2R_14427640_SNP [dm6]	C	A	1.314e^-4	0.792	UTR_3_PRIME phyl
3L	12017812	3L_12017812_SNP [dm3] 3L_12024712_SNP [dm6]	G	A	1.320e^-4	0.792	INTRON rols
2L	6835156	2L_6835156_SNP [dm3] 2L_6835156_SNP [dm6]	T	C	1.326e^-4	0.792	INTRON sens-2
2L	20049032	2L_20049032_DEL [dm3] 2L_20049032_DEL [dm6]	CCC	C	1.330e^-4	0.792	INTRON sNPF
2R	19017080	2R_19017080_SNP [dm3] 2R_23129557_SNP [dm6]	C	T	1.348e^-4	0.792	INTRON CG3215
2L	12384190	2L_12384190_SNP [dm3] 2L_12384190_SNP [dm6]	T	A	1.351e^-4	0.792	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20659581	3R_20659581_SNP [dm3] 3R_24833859_SNP [dm6]	A	G	1.362e^-4	0.792	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17870027	3R_17870027_SNP [dm3] 3R_22044305_SNP [dm6]	C	A	1.369e^-4	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5936931	3L_5936931_SNP [dm3] 3L_5943831_SNP [dm6]	G	A	1.375e^-4	0.792	INTRON CG33993
3R	9787367	3R_9787367_SNP [dm3] 3R_13961645_SNP [dm6]	C	G	1.378e^-4	0.792	NON_SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_HSA
3R	5425016	3R_5425016_SNP [dm3] 3R_9599294_SNP [dm6]	C	T	1.382e^-4	0.792	INTRON CG8312	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	8700359	X_8700359_SNP [dm3] X_8806326_SNP [dm6]	G	A	1.386e^-4	0.792	UPSTREAM Lim1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14271976	2L_14271976_SNP [dm3] 2L_14271976_SNP [dm6]	T	C	1.393e^-4	0.792	INTRON wb
X	12440662	X_12440662_SNP [dm3] X_12546629_SNP [dm6]	G	A	1.398e^-4	0.792	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26298512	3R_26298512_SNP [dm3] 3R_30472790_SNP [dm6]	G	A	1.400e^-4	0.792	INTRON PH4alphaEFB
2R	15473277	2R_15473277_SNP [dm3] 2R_19585772_SNP [dm6]	G	A	1.406e^-4	0.792	INTRON sm
3L	8754302	3L_8754302_SNP [dm3] 3L_8761202_SNP [dm6]	A	T	1.408e^-4	0.792	NON_SYNONYMOUS_CODING Fhos UPSTREAM Fhos
X	4210921	X_4210921_SNP [dm3] X_4316888_SNP [dm6]	G	A	1.410e^-4	0.792	SYNONYMOUS_CODING mei-9
2L	7255404	2L_7255404_SNP [dm3] 2L_7255404_SNP [dm6]	G	T	1.413e^-4	0.792	DOWNSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	9787385	3R_9787385_SNP [dm3] 3R_13961663_SNP [dm6]	A	G	1.421e^-4	0.792	NON_SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_HSA
3L	15247968	3L_15247968_SNP [dm3] 3L_15254868_SNP [dm6]	C	A	1.428e^-4	0.792	INTERGENIC
3L	18075559	3L_18075559_SNP [dm3] 3L_18082459_SNP [dm6]	G	A	1.429e^-4	0.792	INTRON CR43253	TF binding site mE1_TFBS_inv
2L	11374027	2L_11374027_SNP [dm3] 2L_11374027_SNP [dm6]	C	G	1.430e^-4	0.792	DOWNSTREAM salr INTERGENIC
2R	933069	2R_933069_SNP [dm3] 2R_5045564_SNP [dm6]	G	A	1.431e^-4	0.792	INTERGENIC	transposable element FlyBase
X	6435656	X_6435656_SNP [dm3] X_6541623_SNP [dm6]	T	A	1.431e^-4	0.792	INTRON CG34417
3L	14729278	3L_14729278_SNP [dm3] 3L_14736178_SNP [dm6]	A	G	1.433e^-4	0.792	INTRON ome
3L	2655990	3L_2655990_SNP [dm3] 3L_2655990_SNP [dm6]	A	G	1.441e^-4	0.792	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2656035	3L_2656035_SNP [dm3] 3L_2656035_SNP [dm6]	A	G	1.441e^-4	0.792	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2656061	3L_2656061_SNP [dm3] 3L_2656061_SNP [dm6]	C	T	1.441e^-4	0.792	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
X	4049001	X_4049001_SNP [dm3] X_4154968_SNP [dm6]	C	T	1.443e^-4	0.792	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3683816	2L_3683816_SNP [dm3] 2L_3683816_SNP [dm6]	C	T	1.445e^-4	0.792	INTRON CG34340
3R	20048568	3R_20048568_SNP [dm3] 3R_24222846_SNP [dm6]	G	C	1.446e^-4	0.792	NON_SYNONYMOUS_CODING cav UPSTREAM twin DOWNSTREAM Spps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3844988	2L_3844988_SNP [dm3] 2L_3844988_SNP [dm6]	A	T	1.453e^-4	0.792	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19007036	3R_19007036_SNP [dm3] 3R_23181314_SNP [dm6]	C	A	1.456e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
2L	11414320	2L_11414320_SNP [dm3] 2L_11414320_SNP [dm6]	G	T	1.460e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12169814	2L_12169814_SNP [dm3] 2L_12169814_SNP [dm6]	T	C	1.463e^-4	0.792	UTR_3_PRIME CG31760 UPSTREAM CG17217
3R	27140729	3R_27140729_SNP [dm3] 3R_31315007_SNP [dm6]	A	G	1.465e^-4	0.792	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20774213	X_20774213_INS [dm3] X_20903186_INS [dm6]	G	GTGTGAGTG	1.466e^-4	0.792	INTRON shakB
3R	16814302	3R_16814302_SNP [dm3] 3R_20988580_SNP [dm6]	C	T	1.474e^-4	0.792	UPSTREAM CG43446 & 1 other INTRON Calx
2R	17099805	2R_17099805_SNP [dm3] 2R_21212300_SNP [dm6]	A	G	1.475e^-4	0.792	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
2R	8780700	2R_8780700_SNP [dm3] 2R_12893195_SNP [dm6]	T	A	1.477e^-4	0.792	INTRON vg
2R	8780704	2R_8780704_SNP [dm3] 2R_12893199_SNP [dm6]	C	T	1.477e^-4	0.792	INTRON vg
2R	8780710	2R_8780710_SNP [dm3] 2R_12893205_SNP [dm6]	C	T	1.477e^-4	0.792	INTRON vg
X	22242450	X_22242450_SNP [dm3] X_22840614_SNP [dm6]	A	T	1.481e^-4	0.792	INTRON fog & 1 other
3R	25267471	3R_25267471_SNP [dm3] 3R_29441749_SNP [dm6]	C	G	1.486e^-4	0.792	INTRON Ptp99A	TF binding site mE1_TFBS_HSA
2R	16679677	2R_16679677_SNP [dm3] 2R_20792172_SNP [dm6]	G	A	1.489e^-4	0.792	UTR_5_PRIME CG43668 UPSTREAM CG15225
X	22234476	X_22234476_SNP [dm3] X_22832640_SNP [dm6]	G	A	1.507e^-4	0.792	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14391001	3R_14391001_SNP [dm3] 3R_18565279_SNP [dm6]	T	C	1.507e^-4	0.792	UPSTREAM CG43210 & 1 other INTERGENIC
3L	2631317	3L_2631317_SNP [dm3] 3L_2631317_SNP [dm6]	A	G	1.522e^-4	0.792	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	6435528	X_6435528_SNP [dm3] X_6541495_SNP [dm6]	G	A	1.522e^-4	0.792	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
2R	17260323	2R_17260323_SNP [dm3] 2R_21372818_SNP [dm6]	A	T	1.531e^-4	0.792	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6224395	3L_6224395_SNP [dm3] 3L_6231295_SNP [dm6]	T	G	1.531e^-4	0.792	DOWNSTREAM CG13299 INTERGENIC
X	14539337	X_14539337_SNP [dm3] X_14645304_SNP [dm6]	A	G	1.536e^-4	0.792	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2L	10617952	2L_10617952_SNP [dm3] 2L_10617952_SNP [dm6]	G	A	1.539e^-4	0.792	INTRON Trim9
2R	9917141	2R_9917141_SNP [dm3] 2R_14029636_SNP [dm6]	G	T	1.541e^-4	0.792	DOWNSTREAM CG18371 INTRON mam
3R	25162319	3R_25162319_SNP [dm3] 3R_29336597_SNP [dm6]	T	C	1.545e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26430479	3R_26430479_SNP [dm3] 3R_30604757_SNP [dm6]	G	A	1.547e^-4	0.792	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
2R	7120336	2R_7120336_SNP [dm3] 2R_11232831_SNP [dm6]	A	T	1.552e^-4	0.792	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7120389	2R_7120389_SNP [dm3] 2R_11232884_SNP [dm6]	T	A	1.552e^-4	0.792	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7120402	2R_7120402_SNP [dm3] 2R_11232897_SNP [dm6]	G	C	1.552e^-4	0.792	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7120411	2R_7120411_DEL [dm3] 2R_11232906_DEL [dm6]	TGAGT	T	1.552e^-4	0.792	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7120460	2R_7120460_SNP [dm3] 2R_11232955_SNP [dm6]	G	A	1.552e^-4	0.792	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	26419253	3R_26419253_SNP [dm3] 3R_30593531_SNP [dm6]	G	A	1.566e^-4	0.792	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5155190	X_5155190_SNP [dm3] X_5261157_SNP [dm6]	C	T	1.568e^-4	0.792	INTERGENIC
X	14538450	X_14538450_SNP [dm3] X_14644417_SNP [dm6]	T	C	1.570e^-4	0.792	INTRON NetA
3L	18274073	3L_18274073_SNP [dm3] 3L_18280973_SNP [dm6]	G	A	1.577e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12430450	3L_12430450_SNP [dm3] 3L_12437350_SNP [dm6]	A	T	1.578e^-4	0.792	INTERGENIC
2R	10288244	2R_10288244_SNP [dm3] 2R_14400739_SNP [dm6]	G	A	1.582e^-4	0.792	INTERGENIC
X	22246062	X_22246062_SNP [dm3] X_22844226_SNP [dm6]	G	A	1.588e^-4	0.792	INTRON fog & 1 other
2R	7779120	2R_7779120_SNP [dm3] 2R_11891615_SNP [dm6]	T	A	1.617e^-4	0.792	UPSTREAM ERp60 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	18815765	X_18815765_SNP [dm3] X_18921732_SNP [dm6]	C	T	1.637e^-4	0.792	INTERGENIC
2R	17260316	2R_17260316_SNP [dm3] 2R_21372811_SNP [dm6]	C	T	1.641e^-4	0.792	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3766889	2L_3766889_SNP [dm3] 2L_3766889_SNP [dm6]	A	C	1.651e^-4	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	12912058	2L_12912058_SNP [dm3] 2L_12912058_SNP [dm6]	C	T	1.654e^-4	0.792	UPSTREAM ACXC INTERGENIC
3R	14564708	3R_14564708_SNP [dm3] 3R_18738986_SNP [dm6]	C	A	1.659e^-4	0.792	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1094360	2L_1094360_SNP [dm3] 2L_1094360_SNP [dm6]	C	A	1.661e^-4	0.792	INTRON CG4629
2L	20129809	2L_20129809_SNP [dm3] 2L_20129809_SNP [dm6]	T	C	1.662e^-4	0.792	INTERGENIC
2R	15473426	2R_15473426_DEL [dm3] 2R_19585921_DEL [dm6]	CTTAC	C	1.674e^-4	0.792	INTRON sm
2L	3085207	2L_3085207_SNP [dm3] 2L_3085207_SNP [dm6]	A	C	1.675e^-4	0.792	INTRON toc
X	22360507	X_22360507_INS [dm3] X_22958671_INS [dm6]	G	GTGTGTGTGCG...	1.677e^-4	0.792	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9787364	3R_9787364_SNP [dm3] 3R_13961642_SNP [dm6]	G	T	1.691e^-4	0.792	NON_SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_HSA
2R	16686023	2R_16686023_SNP [dm3] 2R_20798518_SNP [dm6]	T	A	1.697e^-4	0.792	INTERGENIC
3L	1993272	3L_1993272_SNP [dm3] 3L_1993272_SNP [dm6]	C	T	1.704e^-4	0.792	INTERGENIC
X	22304191	X_22304191_SNP [dm3] X_22902355_SNP [dm6]	A	T	1.712e^-4	0.792	INTERGENIC
3L	19939752	3L_19939752_SNP [dm3] 3L_19946652_SNP [dm6]	A	G	1.714e^-4	0.792	INTRON Ac76E
2L	12805510	2L_12805510_SNP [dm3] 2L_12805510_SNP [dm6]	A	T	1.716e^-4	0.792	INTERGENIC
3R	17870144	3R_17870144_SNP [dm3] 3R_22044422_SNP [dm6]	T	C	1.717e^-4	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16368772	3R_16368772_SNP [dm3] 3R_20543050_SNP [dm6]	T	A	1.722e^-4	0.792	INTRON Stat92E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	18429790	3R_18429790_SNP [dm3] 3R_22604068_SNP [dm6]	G	A	1.722e^-4	0.792	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_chinmo
X	14422879	X_14422879_SNP [dm3] X_14528846_SNP [dm6]	T	C	1.727e^-4	0.792	INTERGENIC
3R	14564704	3R_14564704_SNP [dm3] 3R_18738982_SNP [dm6]	C	A	1.731e^-4	0.792	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	23443807	3L_23443807_SNP [dm3] 3L_23450707_SNP [dm6]	T	C	1.739e^-4	0.792	INTERGENIC
2L	20100103	2L_20100103_SNP [dm3] 2L_20100103_SNP [dm6]	T	G	1.740e^-4	0.792	INTRON Kua
X	6807728	X_6807728_SNP [dm3] X_6913695_SNP [dm6]	A	T	1.750e^-4	0.792	INTRON CG14431
X	22245333	X_22245333_SNP [dm3] X_22843497_SNP [dm6]	T	G	1.760e^-4	0.792	INTRON fog & 1 other	transposable element FlyBase
2L	6839744	2L_6839744_SNP [dm3] 2L_6839744_SNP [dm6]	G	A	1.764e^-4	0.792	DOWNSTREAM sens-2 INTERGENIC
3R	1611831	3R_1611831_SNP [dm3] 3R_5786109_SNP [dm6]	A	T	1.765e^-4	0.792	INTRON kat-60L1	TF binding site mE1_TFBS_cad
3R	1619191	3R_1619191_SNP [dm3] 3R_5793469_SNP [dm6]	T	G	1.765e^-4	0.792	NON_SYNONYMOUS_CODING CG2046 DOWNSTREAM CG1218	TF binding site mE1_TFBS_sens
3R	1619335	3R_1619335_SNP [dm3] 3R_5793613_SNP [dm6]	A	G	1.765e^-4	0.792	DOWNSTREAM CG1218 INTRON CG2046	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	1623438	3R_1623438_SNP [dm3] 3R_5797716_SNP [dm6]	C	G	1.765e^-4	0.792	SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da
3R	1629316	3R_1629316_SNP [dm3] 3R_5803594_SNP [dm6]	G	T	1.765e^-4	0.792	INTRON CG11000
X	3923752	X_3923752_SNP [dm3] X_4029719_SNP [dm6]	A	T	1.772e^-4	0.792	INTERGENIC
2R	9212712	2R_9212712_SNP [dm3] 2R_13325207_SNP [dm6]	C	T	1.773e^-4	0.792	INTERGENIC
3L	10907435	3L_10907435_SNP [dm3] 3L_10914335_SNP [dm6]	G	A	1.789e^-4	0.792	INTERGENIC
X	22245395	X_22245395_SNP [dm3] X_22843559_SNP [dm6]	G	C	1.798e^-4	0.792	INTRON fog & 1 other
X	20433621	X_20433621_DEL [dm3] X_20562594_DEL [dm6]	GAG	A	1.799e^-4	0.792	INTRON RunxB
3R	26430500	3R_26430500_SNP [dm3] 3R_30604778_SNP [dm6]	A	G	1.801e^-4	0.792	DOWNSTREAM CG31021 INTRON PH4alphaNE3
X	22245452	X_22245452_SNP [dm3] X_22843616_SNP [dm6]	C	A	1.812e^-4	0.792	INTRON fog & 1 other
3R	1592862	3R_1592862_SNP [dm3] 3R_5767140_SNP [dm6]	G	A	1.818e^-4	0.792	INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1595322	3R_1595322_SNP [dm3] 3R_5769600_SNP [dm6]	A	C	1.818e^-4	0.792	INTRON CG2082	TF binding site mE1_TFBS_inv
3R	1604065	3R_1604065_SNP [dm3] 3R_5778343_SNP [dm6]	G	T	1.818e^-4	0.792	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 transposable element FlyBase
3L	3948188	3L_3948188_SNP [dm3] 3L_3948188_SNP [dm6]	T	C	1.822e^-4	0.792	SYNONYMOUS_CODING CG10853 DOWNSTREAM CG14982 & 1 other
3R	13789500	3R_13789500_SNP [dm3] 3R_17963778_SNP [dm6]	A	G	1.828e^-4	0.792	INTRON cpo
3R	24927479	3R_24927479_SNP [dm3] 3R_29101757_SNP [dm6]	C	T	1.830e^-4	0.792	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15167907	2L_15167907_SNP [dm3] 2L_15167907_SNP [dm6]	T	A	1.834e^-4	0.792	INTRON CG4168
3L	9237448	3L_9237448_SNP [dm3] 3L_9244348_SNP [dm6]	G	A	1.834e^-4	0.792	INTERGENIC
2L	8385201	2L_8385201_SNP [dm3] 2L_8385201_SNP [dm6]	A	C	1.839e^-4	0.792	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26431473	3R_26431473_SNP [dm3] 3R_30605751_SNP [dm6]	C	T	1.842e^-4	0.792	SYNONYMOUS_CODING PH4alphaNE3 UPSTREAM CG31016
3R	23774661	3R_23774661_SNP [dm3] 3R_27948939_SNP [dm6]	G	A	1.869e^-4	0.792	UPSTREAM mfrn INTRON Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	17870130	3R_17870130_SNP [dm3] 3R_22044408_SNP [dm6]	T	C	1.871e^-4	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4028146	3L_4028146_SNP [dm3] 3L_4028146_SNP [dm6]	A	G	1.873e^-4	0.792	SYNONYMOUS_CODING Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_inv
2L	4899161	2L_4899161_SNP [dm3] 2L_4899161_SNP [dm6]	G	C	1.889e^-4	0.792	INTRON CG3036
X	16941949	X_16941949_SNP [dm3] X_17047916_SNP [dm6]	C	G	1.896e^-4	0.792	INTRON CG45002
3L	20554672	3L_20554672_SNP [dm3] 3L_20561572_SNP [dm6]	A	T	1.909e^-4	0.792	INTERGENIC
3R	27123118	3R_27123118_SNP [dm3] 3R_31297396_SNP [dm6]	A	G	1.915e^-4	0.792	INTERGENIC
2L	5345639	2L_5345639_SNP [dm3] 2L_5345639_SNP [dm6]	G	A	1.929e^-4	0.792	UPSTREAM nompC INTERGENIC
2R	17851908	2R_17851908_SNP [dm3] 2R_21964403_SNP [dm6]	A	G	1.930e^-4	0.792	SYNONYMOUS_CODING ppk9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7778993	2R_7778993_SNP [dm3] 2R_11891488_SNP [dm6]	T	G	1.938e^-4	0.792	UPSTREAM ERp60 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8791340	2L_8791340_SNP [dm3] 2L_8791340_SNP [dm6]	T	A	1.943e^-4	0.792	INTERGENIC
2L	12194910	2L_12194910_INS [dm3] 2L_12194910_INS [dm6]	A	AG	1.951e^-4	0.792	INTRON aret
3R	1595954	3R_1595954_SNP [dm3] 3R_5770232_SNP [dm6]	A	G	1.951e^-4	0.792	INTRON CG2082
3R	16305501	3R_16305501_MNP [dm3] 3R_20479779_MNP [dm6]	CAC	GCT	1.953e^-4	0.792	INTRON Gfrl
3R	22469075	3R_22469075_SNP [dm3] 3R_26643353_SNP [dm6]	A	T	1.954e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	22468981	3R_22468981_SNP [dm3] 3R_26643259_SNP [dm6]	T	A	1.961e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	13235520	2L_13235520_DEL [dm3] 2L_13235520_DEL [dm6]	CTACT	G	1.962e^-4	0.792	UPSTREAM CG15479 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14532182	2L_14532182_SNP [dm3] 2L_14532182_SNP [dm6]	G	C	1.966e^-4	0.792	DOWNSTREAM CR44852 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10323999	2R_10323999_SNP [dm3] 2R_14436494_SNP [dm6]	T	C	1.972e^-4	0.792	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	8898207	3R_8898207_SNP [dm3] 3R_13072485_SNP [dm6]	A	C	1.973e^-4	0.792	UTR_5_PRIME sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9410132	X_9410132_SNP [dm3] X_9516099_SNP [dm6]	G	T	1.978e^-4	0.792	INTRON CG32700
3L	2631377	3L_2631377_SNP [dm3] 3L_2631377_SNP [dm6]	T	G	1.996e^-4	0.792	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	5828615	X_5828615_SNP [dm3] X_5934582_SNP [dm6]	T	C	2.000e^-4	0.792	INTRON CG3726
2L	13127391	2L_13127391_DEL [dm3] 2L_13127391_DEL [dm6]	GGCTAAAG	G	2.007e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3657871	2R_3657871_INS [dm3] 2R_7770366_INS [dm6]	C	CAC	2.007e^-4	0.792	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3657873	2R_3657873_MNP [dm3] 2R_7770368_MNP [dm6]	ATA	GGG	2.007e^-4	0.792	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2223064	3L_2223064_SNP [dm3] 3L_2223064_SNP [dm6]	G	A	2.007e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad
3R	1635739	3R_1635739_SNP [dm3] 3R_5810017_SNP [dm6]	A	G	2.013e^-4	0.792	UTR_3_PRIME CG11000
X	22247582	X_22247582_SNP [dm3] X_22845746_SNP [dm6]	G	A	2.020e^-4	0.792	INTRON fog & 1 other
2L	12194929	2L_12194929_SNP [dm3] 2L_12194929_SNP [dm6]	A	G	2.020e^-4	0.792	INTRON aret
2L	6602983	2L_6602983_SNP [dm3] 2L_6602983_SNP [dm6]	C	T	2.028e^-4	0.792	INTERGENIC
2L	20097678	2L_20097678_SNP [dm3] 2L_20097678_SNP [dm6]	G	C	2.030e^-4	0.792	UTR_5_PRIME Kua UPSTREAM Kua & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8757014	2L_8757014_INS [dm3] 2L_8757014_INS [dm6]	A	AA	2.031e^-4	0.792	INTERGENIC
X	14117698	X_14117698_SNP [dm3] X_14223665_SNP [dm6]	G	A	2.053e^-4	0.792	SYNONYMOUS_CODING l_1_G0007 DOWNSTREAM CG11674	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9366083	2R_9366083_SNP [dm3] 2R_13478578_SNP [dm6]	T	C	2.054e^-4	0.792	DOWNSTREAM CG43192 INTRON arr
3R	21683467	3R_21683467_SNP [dm3] 3R_25857745_SNP [dm6]	G	C	2.066e^-4	0.792	INTRON CG5890	TF binding site BDTNP1_TFBS_hb
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	2.069e^-4	0.792	INTERGENIC
2R	20716686	2R_20716686_SNP [dm3] 2R_24829163_SNP [dm6]	T	A	2.073e^-4	0.792	INTRON Dll	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	924922	2R_924922_SNP [dm3] 2R_5037417_SNP [dm6]	G	A	2.074e^-4	0.792	INTERGENIC
3R	26257330	3R_26257330_SNP [dm3] 3R_30431608_SNP [dm6]	C	T	2.075e^-4	0.792	UPSTREAM CG15534 DOWNSTREAM CG15533 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3R	17267544	3R_17267544_SNP [dm3] 3R_21441822_SNP [dm6]	C	G	2.076e^-4	0.792	UTR_3_PRIME lbe
2R	9366082	2R_9366082_SNP [dm3] 2R_13478577_SNP [dm6]	T	A	2.080e^-4	0.792	DOWNSTREAM CG43192 INTRON arr
3L	12822143	3L_12822143_SNP [dm3] 3L_12829043_SNP [dm6]	A	G	2.085e^-4	0.792	INTRON CG10960
2R	12255589	2R_12255589_SNP [dm3] 2R_16368084_SNP [dm6]	G	A	2.097e^-4	0.792	INTERGENIC
3R	17871560	3R_17871560_SNP [dm3] 3R_22045838_SNP [dm6]	C	A	2.100e^-4	0.792	INTRON how	TF binding site BDTNP1_TFBS_twi
2L	9442602	2L_9442602_SNP [dm3] 2L_9442602_SNP [dm6]	C	A	2.101e^-4	0.792	INTRON numb
2L	3406975	2L_3406975_SNP [dm3] 2L_3406975_SNP [dm6]	C	A	2.103e^-4	0.792	SYNONYMOUS_CODING pgant2
3R	22451224	3R_22451224_SNP [dm3] 3R_26625502_SNP [dm6]	C	T	2.106e^-4	0.792	NON_SYNONYMOUS_CODING TwdlL DOWNSTREAM TwdlO	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2404493	2L_2404493_SNP [dm3] 2L_2404493_SNP [dm6]	G	A	2.110e^-4	0.792	INTRON VGlut
2L	12163356	2L_12163356_SNP [dm3] 2L_12163356_SNP [dm6]	G	T	2.121e^-4	0.792	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
3R	23167061	3R_23167061_SNP [dm3] 3R_27341339_SNP [dm6]	G	A	2.138e^-4	0.792	INTRON CG42534
2L	14357986	2L_14357986_SNP [dm3] 2L_14357986_SNP [dm6]	T	G	2.142e^-4	0.792	INTRON Rab14	TF binding site mE1_TFBS_sens
2L	4024649	2L_4024649_SNP [dm3] 2L_4024649_SNP [dm6]	G	T	2.142e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	2.142e^-4	0.792	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	1586811	3L_1586811_SNP [dm3] 3L_1586811_SNP [dm6]	A	T	2.142e^-4	0.792	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16820318	3L_16820318_SNP [dm3] 3L_16827218_SNP [dm6]	T	C	2.142e^-4	0.792	INTRON CG13024
3L	5357128	3L_5357128_SNP [dm3] 3L_5364028_SNP [dm6]	C	T	2.142e^-4	0.792	INTRON Uev1A
3R	16637944	3R_16637944_SNP [dm3] 3R_20812222_SNP [dm6]	C	A	2.142e^-4	0.792	SYNONYMOUS_CODING Fancd2
3R	16637986	3R_16637986_SNP [dm3] 3R_20812264_SNP [dm6]	C	T	2.142e^-4	0.792	SYNONYMOUS_CODING Fancd2
3R	16639212	3R_16639212_SNP [dm3] 3R_20813490_SNP [dm6]	G	A	2.142e^-4	0.792	SYNONYMOUS_CODING Fancd2
3R	23032225	3R_23032225_SNP [dm3] 3R_27206503_SNP [dm6]	C	T	2.142e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14802748	X_14802748_SNP [dm3] X_14908715_SNP [dm6]	G	A	2.142e^-4	0.792	SYNONYMOUS_CODING CG9509 INTRON Flo2	TF binding site mE1_TFBS_cad
3L	7641762	3L_7641762_SNP [dm3] 3L_7648662_SNP [dm6]	C	T	2.145e^-4	0.792	INTERGENIC
3L	11384983	3L_11384983_SNP [dm3] 3L_11391883_SNP [dm6]	C	T	2.146e^-4	0.792	INTERGENIC
3R	17367803	3R_17367803_SNP [dm3] 3R_21542081_SNP [dm6]	G	A	2.146e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	18852422	2R_18852422_SNP [dm3] 2R_22964899_SNP [dm6]	C	T	2.157e^-4	0.792	INTERGENIC
3L	11730131	3L_11730131_SNP [dm3] 3L_11737031_SNP [dm6]	G	A	2.167e^-4	0.792	UTR_3_PRIME CG6024
2R	12822587	2R_12822587_SNP [dm3] 2R_16935082_SNP [dm6]	A	C	2.174e^-4	0.792	INTRON Pkc53E
2L	21057002	2L_21057002_SNP [dm3] 2L_21057002_SNP [dm6]	T	C	2.175e^-4	0.792	NON_SYNONYMOUS_CODING Itgbetanu DOWNSTREAM CG9265
2L	3406804	2L_3406804_SNP [dm3] 2L_3406804_SNP [dm6]	A	G	2.179e^-4	0.792	SYNONYMOUS_CODING pgant2
2L	3874589	2L_3874589_SNP [dm3] 2L_3874589_SNP [dm6]	T	C	2.180e^-4	0.792	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
X	14538009	X_14538009_SNP [dm3] X_14643976_SNP [dm6]	C	T	2.184e^-4	0.792	INTRON NetA
3R	1595700	3R_1595700_SNP [dm3] 3R_5769978_SNP [dm6]	G	A	2.184e^-4	0.792	INTRON CG2082	TF binding site mE1_TFBS_inv
3L	6224396	3L_6224396_SNP [dm3] 3L_6231296_SNP [dm6]	T	G	2.188e^-4	0.792	DOWNSTREAM CG13299 INTERGENIC
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	2.190e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27135746	3R_27135746_SNP [dm3] 3R_31310024_SNP [dm6]	G	C	2.190e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14775640	2L_14775640_SNP [dm3] 2L_14775640_SNP [dm6]	A	C	2.192e^-4	0.792	UPSTREAM CG4650 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	8635853	3R_8635853_SNP [dm3] 3R_12810131_SNP [dm6]	C	A	2.198e^-4	0.792	INTERGENIC
2L	4460613	2L_4460613_SNP [dm3] 2L_4460613_SNP [dm6]	G	C	2.198e^-4	0.792	NON_SYNONYMOUS_CODING CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	5465984	2R_5465984_SNP [dm3] 2R_9578479_SNP [dm6]	G	A	2.201e^-4	0.792	UTR_5_PRIME Not1 UPSTREAM Not1 & 1 other INTRON CG1814	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2420546	2L_2420546_SNP [dm3] 2L_2420546_SNP [dm6]	A	C	2.205e^-4	0.792	UPSTREAM CG34447 & 1 other INTERGENIC
2L	8784556	2L_8784556_SNP [dm3] 2L_8784556_SNP [dm6]	C	T	2.205e^-4	0.792	INTERGENIC
3L	14068535	3L_14068535_SNP [dm3] 3L_14075435_SNP [dm6]	G	T	2.207e^-4	0.792	NON_SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl
2R	9370172	2R_9370172_SNP [dm3] 2R_13482667_SNP [dm6]	C	A	2.212e^-4	0.792	DOWNSTREAM cbc INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	16639302	3R_16639302_SNP [dm3] 3R_20813580_SNP [dm6]	G	T	2.216e^-4	0.792	SYNONYMOUS_CODING Fancd2
3L	7868711	3L_7868711_SNP [dm3] 3L_7875611_SNP [dm6]	G	A	2.235e^-4	0.792	INTRON CG32365	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2R	6501807	2R_6501807_SNP [dm3] 2R_10614302_SNP [dm6]	C	T	2.235e^-4	0.792	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2482060	2L_2482060_SNP [dm3] 2L_2482060_SNP [dm6]	G	A	2.238e^-4	0.792	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	16296037	3R_16296037_SNP [dm3] 3R_20470315_SNP [dm6]	C	T	2.241e^-4	0.792	INTRON Gfrl
3R	3989031	3R_3989031_DEL [dm3] 3R_8163309_DEL [dm6]	AC	A	2.249e^-4	0.792	INTRON grn
X	8095634	X_8095634_SNP [dm3] X_8201601_SNP [dm6]	A	C	2.251e^-4	0.792	INTRON sdt
3R	25512815	3R_25512815_SNP [dm3] 3R_29687093_SNP [dm6]	G	A	2.263e^-4	0.792	UPSTREAM Obp99c INTRON Obp99c
X	13779879	X_13779879_SNP [dm3] X_13885846_SNP [dm6]	A	G	2.265e^-4	0.792	INTRON mamo
3R	27162904	3R_27162904_SNP [dm3] 3R_31337182_SNP [dm6]	A	C	2.272e^-4	0.792	INTRON CG34347
3R	16306532	3R_16306532_SNP [dm3] 3R_20480810_SNP [dm6]	G	C	2.273e^-4	0.792	START_GAINED Gfrl UTR_5_PRIME Gfrl INTRON Gfrl
3R	16306538	3R_16306538_SNP [dm3] 3R_20480816_SNP [dm6]	C	G	2.273e^-4	0.792	UTR_5_PRIME Gfrl INTRON Gfrl
3R	55637	3R_55637_SNP [dm3] 3R_4229915_SNP [dm6]	G	T	2.279e^-4	0.792	UPSTREAM DhpD DOWNSTREAM CG14641 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
X	22277424	X_22277424_INS [dm3] X_22875588_INS [dm6]	A	ATA	2.303e^-4	0.792	DOWNSTREAM CG34334 INTRON CG42346
3R	27181918	3R_27181918_SNP [dm3] 3R_31356196_SNP [dm6]	C	A	2.308e^-4	0.792	INTRON CG34347
3R	27190400	3R_27190400_SNP [dm3] 3R_31364678_SNP [dm6]	T	G	2.308e^-4	0.792	INTRON CG34347
2L	15011610	2L_15011610_SNP [dm3] 2L_15011610_SNP [dm6]	G	A	2.311e^-4	0.792	UTR_3_PRIME l_2_35Bd DOWNSTREAM CR43856
3L	4109831	3L_4109831_SNP [dm3] 3L_4109831_SNP [dm6]	T	G	2.313e^-4	0.792	INTRON Ack	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27277652	3R_27277652_SNP [dm3] 3R_31451930_SNP [dm6]	A	G	2.313e^-4	0.792	INTRON Gprk2	TF binding site mE1_TFBS_cad
2R	16426797	2R_16426797_SNP [dm3] 2R_20539292_SNP [dm6]	T	C	2.315e^-4	0.792	UTR_5_PRIME CG13427 DOWNSTREAM CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12999642	X_12999642_DEL [dm3] X_13105609_DEL [dm6]	TTG	AA	2.328e^-4	0.792	INTRON CG43313
X	5828165	X_5828165_SNP [dm3] X_5934132_SNP [dm6]	G	A	2.329e^-4	0.792	INTRON CG3726
2R	12094749	2R_12094749_SNP [dm3] 2R_16207244_SNP [dm6]	C	G	2.332e^-4	0.792	DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
X	22234773	X_22234773_INS [dm3] X_22832937_INS [dm6]	C	CT	2.334e^-4	0.792	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1093930	X_1093930_SNP [dm3] X_1199897_SNP [dm6]	A	T	2.335e^-4	0.792	INTRON CG14625
3R	26023437	3R_26023437_SNP [dm3] 3R_30197715_SNP [dm6]	C	T	2.367e^-4	0.792	INTRON CG9743
3R	27172299	3R_27172299_SNP [dm3] 3R_31346577_SNP [dm6]	C	T	2.368e^-4	0.792	INTRON CG34347
2L	3845015	2L_3845015_SNP [dm3] 2L_3845015_SNP [dm6]	G	A	2.372e^-4	0.792	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26029998	3R_26029998_SNP [dm3] 3R_30204276_SNP [dm6]	A	C	2.375e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9322393	3L_9322393_SNP [dm3] 3L_9329293_SNP [dm6]	A	G	2.375e^-4	0.792	INTERGENIC
3R	27276713	3R_27276713_SNP [dm3] 3R_31450991_SNP [dm6]	C	A	2.380e^-4	0.792	INTRON Gprk2
3R	27465461	3R_27465461_SNP [dm3] 3R_31639739_SNP [dm6]	C	T	2.383e^-4	0.792	INTRON kek6	TF binding site mE1_TFBS_inv
2R	898008	2R_898008_SNP [dm3] 2R_5010503_SNP [dm6]	G	C	2.386e^-4	0.792	INTRON Ir41a	transposable element FlyBase
3R	18676212	3R_18676212_SNP [dm3] 3R_22850490_SNP [dm6]	G	A	2.387e^-4	0.792	DOWNSTREAM CR43846 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14279159	2L_14279159_SNP [dm3] 2L_14279159_SNP [dm6]	A	T	2.387e^-4	0.792	INTRON wb
2L	14279166	2L_14279166_SNP [dm3] 2L_14279166_SNP [dm6]	A	G	2.387e^-4	0.792	INTRON wb
3R	26467350	3R_26467350_SNP [dm3] 3R_30641628_SNP [dm6]	T	C	2.390e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19208306	3R_19208306_DEL [dm3] 3R_23382584_DEL [dm6]	AT	A	2.392e^-4	0.792	INTRON CG4393
3R	7162973	3R_7162973_SNP [dm3] 3R_11337251_SNP [dm6]	C	T	2.397e^-4	0.792	INTRON pros
3L	19698679	3L_19698679_SNP [dm3] 3L_19705579_SNP [dm6]	G	A	2.397e^-4	0.792	INTRON serp
3L	18477575	3L_18477575_SNP [dm3] 3L_18484475_SNP [dm6]	A	C	2.398e^-4	0.792	DOWNSTREAM AstC-R2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7623904	3R_7623904_SNP [dm3] 3R_11798182_SNP [dm6]	T	G	2.414e^-4	0.792	INTRON ClC-a
2L	7459636	2L_7459636_SNP [dm3] 2L_7459636_SNP [dm6]	C	A	2.422e^-4	0.792	UPSTREAM Gr28b INTRON Gr28b
3R	20659440	3R_20659440_SNP [dm3] 3R_24833718_SNP [dm6]	A	C	2.422e^-4	0.792	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1036279	X_1036279_SNP [dm3] X_1142246_SNP [dm6]	G	C	2.426e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9787371	3R_9787371_SNP [dm3] 3R_13961649_SNP [dm6]	T	G	2.428e^-4	0.792	NON_SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_HSA
2L	13312434	2L_13312434_SNP [dm3] 2L_13312434_SNP [dm6]	A	G	2.434e^-4	0.792	INTRON CG43778
3R	14235003	3R_14235003_SNP [dm3] 3R_18409281_SNP [dm6]	A	G	2.435e^-4	0.792	DOWNSTREAM CG10864 INTRON CG31122
3L	4951222	3L_4951222_SNP [dm3] 3L_4951222_SNP [dm6]	T	A	2.439e^-4	0.792	INTRON Con	TF binding site mE1_TFBS_chinmo
3L	10988906	3L_10988906_SNP [dm3] 3L_10995806_SNP [dm6]	T	C	2.441e^-4	0.792	INTRON klu
3L	10989083	3L_10989083_DEL [dm3] 3L_10995983_DEL [dm6]	AA	A	2.441e^-4	0.792	INTRON klu
3L	6621212	3L_6621212_SNP [dm3] 3L_6628112_SNP [dm6]	T	A	2.441e^-4	0.792	INTRON GluRIA
3R	26021747	3R_26021747_SNP [dm3] 3R_30196025_SNP [dm6]	C	A	2.441e^-4	0.792	SYNONYMOUS_CODING CG15531 DOWNSTREAM CG9743
3R	5305845	3R_5305845_SNP [dm3] 3R_9480123_SNP [dm6]	G	A	2.441e^-4	0.792	INTRON CG16779
2R	9387986	2R_9387986_SNP [dm3] 2R_13500481_SNP [dm6]	G	A	2.445e^-4	0.792	UPSTREAM mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14538083	X_14538083_SNP [dm3] X_14644050_SNP [dm6]	T	A	2.445e^-4	0.792	INTRON NetA
2L	12520789	2L_12520789_INS [dm3] 2L_12520789_INS [dm6]	G	GGTTTA	2.447e^-4	0.792	INTRON bun	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
3R	21200493	3R_21200493_SNP [dm3] 3R_25374771_SNP [dm6]	G	A	2.447e^-4	0.792	INTRON Fur1
2L	13116309	2L_13116309_SNP [dm3] 2L_13116309_SNP [dm6]	A	G	2.450e^-4	0.792	INTERGENIC
2L	1095106	2L_1095106_SNP [dm3] 2L_1095106_SNP [dm6]	G	A	2.454e^-4	0.792	INTRON CG4629
3R	27164794	3R_27164794_SNP [dm3] 3R_31339072_SNP [dm6]	A	T	2.456e^-4	0.792	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15247854	3L_15247854_SNP [dm3] 3L_15254754_SNP [dm6]	G	A	2.459e^-4	0.792	INTERGENIC
X	9487741	X_9487741_SNP [dm3] X_9593708_SNP [dm6]	T	A	2.464e^-4	0.792	INTERGENIC
3L	681811	3L_681811_DEL [dm3] 3L_681811_DEL [dm6]	TA	G	2.474e^-4	0.792	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	681815	3L_681815_DEL [dm3] 3L_681815_DEL [dm6]	TTTAATTACCATATCC...	T	2.474e^-4	0.792	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2432782	3L_2432782_SNP [dm3] 3L_2432782_SNP [dm6]	C	T	2.477e^-4	0.792	INTRON CG45186
3L	2656658	3L_2656658_SNP [dm3] 3L_2656658_SNP [dm6]	C	T	2.480e^-4	0.792	UTR_3_PRIME Fife
3R	27137491	3R_27137491_SNP [dm3] 3R_31311769_SNP [dm6]	C	T	2.487e^-4	0.792	UTR_5_PRIME CG34347 INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27138940	3R_27138940_SNP [dm3] 3R_31313218_SNP [dm6]	G	T	2.487e^-4	0.792	INTRON CG34347	TF binding site mE1_TFBS_inv
3R	27138965	3R_27138965_SNP [dm3] 3R_31313243_SNP [dm6]	C	G	2.487e^-4	0.792	INTRON CG34347	TF binding site mE1_TFBS_inv
3R	27139090	3R_27139090_SNP [dm3] 3R_31313368_SNP [dm6]	A	G	2.487e^-4	0.792	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25512847	3R_25512847_SNP [dm3] 3R_29687125_SNP [dm6]	G	A	2.491e^-4	0.792	UPSTREAM Obp99c INTRON Obp99c
2R	7120627	2R_7120627_SNP [dm3] 2R_11233122_SNP [dm6]	T	C	2.494e^-4	0.792	UPSTREAM metro & 1 other DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	15473479	2R_15473479_SNP [dm3] 2R_19585974_SNP [dm6]	T	C	2.499e^-4	0.792	INTRON sm
3L	15324648	3L_15324648_SNP [dm3] 3L_15331548_SNP [dm6]	A	C	2.504e^-4	0.792	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6538732	X_6538732_SNP [dm3] X_6644699_SNP [dm6]	A	C	2.512e^-4	0.792	SYNONYMOUS_CODING pigs
2L	14272034	2L_14272034_SNP [dm3] 2L_14272034_SNP [dm6]	A	G	2.512e^-4	0.792	INTRON wb
3L	18270567	3L_18270567_SNP [dm3] 3L_18277467_SNP [dm6]	C	T	2.524e^-4	0.792	INTERGENIC
2R	14749477	2R_14749477_SNP [dm3] 2R_18861972_SNP [dm6]	T	G	2.525e^-4	0.792	UTR_5_PRIME Jheh3 UPSTREAM CG43069
2L	5141365	2L_5141365_SNP [dm3] 2L_5141365_SNP [dm6]	A	G	2.531e^-4	0.792	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12768927	2L_12768927_SNP [dm3] 2L_12768927_SNP [dm6]	G	A	2.532e^-4	0.792	INTERGENIC
2L	12768933	2L_12768933_SNP [dm3] 2L_12768933_SNP [dm6]	C	T	2.532e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18343140	3R_18343140_DEL [dm3] 3R_22517418_DEL [dm6]	TG	T	2.533e^-4	0.792	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	3402672	2R_3402672_SNP [dm3] 2R_7515167_SNP [dm6]	A	C	2.534e^-4	0.792	INTRON CG1603	TF binding site mE1_TFBS_sens
3L	17578853	3L_17578853_SNP [dm3] 3L_17585753_SNP [dm6]	C	A	2.534e^-4	0.792	INTRON Eip74EF	TF binding site mE1_TFBS_inv
X	10845703	X_10845703_SNP [dm3] X_10951670_SNP [dm6]	G	A	2.551e^-4	0.792	UTR_3_PRIME Rab9Fb UPSTREAM Rab9Fa INTRON Myo10A
3L	14221903	3L_14221903_SNP [dm3] 3L_14228803_SNP [dm6]	G	C	2.557e^-4	0.792	UPSTREAM nuf INTRON nuf
3R	14390995	3R_14390995_SNP [dm3] 3R_18565273_SNP [dm6]	A	C	2.563e^-4	0.792	UPSTREAM CG43210 & 1 other INTERGENIC
2L	2557027	2L_2557027_SNP [dm3] 2L_2557027_SNP [dm6]	A	T	2.564e^-4	0.792	DOWNSTREAM CR44113 INTERGENIC
2L	6775906	2L_6775906_SNP [dm3] 2L_6775906_SNP [dm6]	G	A	2.571e^-4	0.792	INTRON CG17378	TF binding site mE1_TFBS_cad
3R	38747	3R_38747_SNP [dm3] 3R_4213025_SNP [dm6]	G	T	2.573e^-4	0.792	INTRON CG14636 & 1 other
X	5894784	X_5894784_SNP [dm3] X_6000751_SNP [dm6]	A	G	2.578e^-4	0.792	UTR_5_PRIME CG4766 UPSTREAM CR44498	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9913516	2R_9913516_SNP [dm3] 2R_14026011_SNP [dm6]	T	C	2.586e^-4	0.792	INTRON mam	TF binding site mE1_TFBS_Trl
3R	15119308	3R_15119308_SNP [dm3] 3R_19293586_SNP [dm6]	G	T	2.593e^-4	0.792	INTERGENIC
2L	8756977	2L_8756977_SNP [dm3] 2L_8756977_SNP [dm6]	T	C	2.593e^-4	0.792	INTERGENIC
2R	7779198	2R_7779198_SNP [dm3] 2R_11891693_SNP [dm6]	T	C	2.600e^-4	0.792	UPSTREAM ERp60 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	20081240	2L_20081240_SNP [dm3] 2L_20081240_SNP [dm6]	T	C	2.608e^-4	0.792	DOWNSTREAM fok INTRON neb & 1 other
2L	3668424	2L_3668424_SNP [dm3] 2L_3668424_SNP [dm6]	A	G	2.612e^-4	0.792	DOWNSTREAM CG42463 & 1 other INTRON CG34340 & 1 other
3R	1625732	3R_1625732_SNP [dm3] 3R_5800010_SNP [dm6]	T	G	2.614e^-4	0.792	DOWNSTREAM CG10979 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20894399	X_20894399_SNP [dm3] X_21023372_SNP [dm6]	T	C	2.623e^-4	0.792	DOWNSTREAM r-cup INTERGENIC
2R	850066	2R_850066_SNP [dm3] 2R_4962561_SNP [dm6]	G	A	2.625e^-4	0.792	INTRON Ir41a	transposable element FlyBase
2R	850095	2R_850095_SNP [dm3] 2R_4962590_SNP [dm6]	A	G	2.625e^-4	0.792	INTRON Ir41a	transposable element FlyBase
X	12441211	X_12441211_SNP [dm3] X_12547178_SNP [dm6]	C	G	2.638e^-4	0.792	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8439836	2L_8439836_SNP [dm3] 2L_8439836_SNP [dm6]	C	T	2.640e^-4	0.792	SYNONYMOUS_CODING mus201
2L	4206129	2L_4206129_SNP [dm3] 2L_4206129_SNP [dm6]	T	G	2.650e^-4	0.792	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	3845094	2L_3845094_SNP [dm3] 2L_3845094_SNP [dm6]	T	A	2.650e^-4	0.792	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14750005	2R_14750005_SNP [dm3] 2R_18862500_SNP [dm6]	A	G	2.657e^-4	0.792	UPSTREAM CG43069 & 1 other INTERGENIC
2R	20425042	2R_20425042_SNP [dm3] 2R_24537519_SNP [dm6]	A	T	2.658e^-4	0.792	UTR_5_PRIME ITP DOWNSTREAM CG11413 INTRON CG4622
3L	4652421	3L_4652421_SNP [dm3] 3L_4652421_SNP [dm6]	C	A	2.664e^-4	0.792	INTRON axo
3L	3948227	3L_3948227_SNP [dm3] 3L_3948227_SNP [dm6]	A	G	2.667e^-4	0.792	SYNONYMOUS_CODING CG10853 DOWNSTREAM CG14982 & 1 other
2L	12203354	2L_12203354_SNP [dm3] 2L_12203354_SNP [dm6]	A	T	2.667e^-4	0.792	INTRON aret
2L	20101607	2L_20101607_SNP [dm3] 2L_20101607_SNP [dm6]	T	A	2.678e^-4	0.792	INTRON Kua
3R	14390996	3R_14390996_SNP [dm3] 3R_18565274_SNP [dm6]	C	A	2.680e^-4	0.792	UPSTREAM CG43210 & 1 other INTERGENIC
3R	27286456	3R_27286456_SNP [dm3] 3R_31460734_SNP [dm6]	C	A	2.681e^-4	0.792	NON_SYNONYMOUS_CODING CG11334 UPSTREAM lox	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8221714	3L_8221714_SNP [dm3] 3L_8228614_SNP [dm6]	G	A	2.696e^-4	0.792	UPSTREAM eIF4E-3 INTERGENIC
2L	2792709	2L_2792709_SNP [dm3] 2L_2792709_SNP [dm6]	A	G	2.696e^-4	0.792	UTR_3_PRIME Syt1 INTRON Syt1
3R	23166891	3R_23166891_SNP [dm3] 3R_27341169_SNP [dm6]	A	T	2.701e^-4	0.792	INTRON CG42534
3R	27141560	3R_27141560_SNP [dm3] 3R_31315838_SNP [dm6]	T	G	2.708e^-4	0.792	INTRON CG34347
X	22298874	X_22298874_SNP [dm3] X_22897038_SNP [dm6]	G	A	2.708e^-4	0.792	INTERGENIC	transposable element FlyBase
3L	12379468	3L_12379468_SNP [dm3] 3L_12386368_SNP [dm6]	C	T	2.712e^-4	0.792	INTRON Ncc69
3L	12379470	3L_12379470_SNP [dm3] 3L_12386370_SNP [dm6]	C	T	2.712e^-4	0.792	INTRON Ncc69
2L	3660691	2L_3660691_SNP [dm3] 2L_3660691_SNP [dm6]	T	G	2.714e^-4	0.792	INTERGENIC
2L	3766867	2L_3766867_SNP [dm3] 2L_3766867_SNP [dm6]	G	A	2.716e^-4	0.792	UPSTREAM mir-1004 INTRON CG43707
2L	6488870	2L_6488870_SNP [dm3] 2L_6488870_SNP [dm6]	T	A	2.719e^-4	0.792	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3401276	2R_3401276_SNP [dm3] 2R_7513771_SNP [dm6]	T	C	2.721e^-4	0.792	DOWNSTREAM CG1603 INTERGENIC	transposable element FlyBase
3R	19007102	3R_19007102_SNP [dm3] 3R_23181380_SNP [dm6]	A	C	2.739e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
2L	14872655	2L_14872655_SNP [dm3] 2L_14872655_SNP [dm6]	T	C	2.752e^-4	0.792	UPSTREAM CG4480 INTERGENIC
X	10469277	X_10469277_SNP [dm3] X_10575244_SNP [dm6]	G	C	2.757e^-4	0.792	INTRON spri
X	22268940	X_22268940_SNP [dm3] X_22867104_SNP [dm6]	A	T	2.758e^-4	0.792	INTRON CG42346	TF binding site mE1_TFBS_HSA
3L	5319772	3L_5319772_SNP [dm3] 3L_5326672_SNP [dm6]	C	A	2.784e^-4	0.792	INTERGENIC
3R	20672357	3R_20672357_SNP [dm3] 3R_24846635_SNP [dm6]	A	T	2.792e^-4	0.792	UPSTREAM Esp INTRON Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14348948	2L_14348948_SNP [dm3] 2L_14348948_SNP [dm6]	G	C	2.794e^-4	0.792	UPSTREAM CR44850 & 1 other DOWNSTREAM l_2_34Fc INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11780493	2L_11780493_SNP [dm3] 2L_11780493_SNP [dm6]	T	A	2.804e^-4	0.792	INTERGENIC
2L	12379193	2L_12379193_SNP [dm3] 2L_12379193_SNP [dm6]	G	A	2.805e^-4	0.792	INTRON bru-2
3R	7706855	3R_7706855_SNP [dm3] 3R_11881133_SNP [dm6]	A	G	2.809e^-4	0.792	INTRON CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8788124	2L_8788124_SNP [dm3] 2L_8788124_SNP [dm6]	A	T	2.812e^-4	0.792	INTERGENIC
X	1036137	X_1036137_SNP [dm3] X_1142104_SNP [dm6]	C	T	2.825e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20724865	2R_20724865_SNP [dm3] 2R_24837342_SNP [dm6]	C	T	2.827e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10012117	X_10012117_SNP [dm3] X_10118084_SNP [dm6]	A	G	2.831e^-4	0.792	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6919297	2R_6919297_SNP [dm3] 2R_11031792_SNP [dm6]	A	G	2.842e^-4	0.792	INTRON luna
3R	23166904	3R_23166904_SNP [dm3] 3R_27341182_SNP [dm6]	C	T	2.845e^-4	0.792	INTRON CG42534
3R	23166950	3R_23166950_SNP [dm3] 3R_27341228_SNP [dm6]	G	A	2.845e^-4	0.792	INTRON CG42534
3L	12250219	3L_12250219_SNP [dm3] 3L_12257119_SNP [dm6]	C	T	2.847e^-4	0.792	INTRON app
X	9410115	X_9410115_DEL [dm3] X_9516082_DEL [dm6]	GT	G	2.860e^-4	0.792	INTRON CG32700
X	5826632	X_5826632_SNP [dm3] X_5932599_SNP [dm6]	T	C	2.866e^-4	0.792	INTRON CG3726
3L	4268182	3L_4268182_SNP [dm3] 3L_4268182_SNP [dm6]	A	G	2.867e^-4	0.792	UPSTREAM CG33764 INTRON CG1273
3R	26114522	3R_26114522_SNP [dm3] 3R_30288800_SNP [dm6]	T	A	2.870e^-4	0.792	INTRON hdc
3L	8354356	3L_8354356_SNP [dm3] 3L_8361256_SNP [dm6]	C	T	2.872e^-4	0.792	UPSTREAM Idh INTERGENIC	TF binding site mE1_TFBS_Trl
3R	18460944	3R_18460944_SNP [dm3] 3R_22635222_SNP [dm6]	A	T	2.875e^-4	0.792	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	17624424	3R_17624424_SNP [dm3] 3R_21798702_SNP [dm6]	A	T	2.875e^-4	0.792	UPSTREAM mir-999 & 1 other INTRON CASK
X	12440685	X_12440685_SNP [dm3] X_12546652_SNP [dm6]	A	T	2.875e^-4	0.792	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14446581	3R_14446581_SNP [dm3] 3R_18620859_SNP [dm6]	A	T	2.887e^-4	0.792	UPSTREAM CG14304 INTRON qin & 1 other
3L	18697274	3L_18697274_SNP [dm3] 3L_18704174_SNP [dm6]	A	C	2.888e^-4	0.792	INTERGENIC
3L	20372353	3L_20372353_SNP [dm3] 3L_20379253_SNP [dm6]	G	T	2.891e^-4	0.792	INTRON RhoBTB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14684925	2L_14684925_DEL [dm3] 2L_14684925_DEL [dm6]	CAGGT	GTCC	2.896e^-4	0.792	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8789926	2L_8789926_SNP [dm3] 2L_8789926_SNP [dm6]	T	A	2.913e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3790075	3L_3790075_SNP [dm3] 3L_3790075_SNP [dm6]	G	A	2.919e^-4	0.792	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	5979705	2R_5979705_SNP [dm3] 2R_10092200_SNP [dm6]	A	T	2.919e^-4	0.792	INTRON CG2269
3R	19007108	3R_19007108_SNP [dm3] 3R_23181386_SNP [dm6]	A	T	2.924e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
2R	13555097	2R_13555097_SNP [dm3] 2R_17667592_SNP [dm6]	C	T	2.929e^-4	0.792	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27136928	3R_27136928_SNP [dm3] 3R_31311206_SNP [dm6]	G	A	2.949e^-4	0.792	UTR_5_PRIME CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	27162891	3R_27162891_SNP [dm3] 3R_31337169_SNP [dm6]	G	T	2.949e^-4	0.792	INTRON CG34347
2R	950942	2R_950942_SNP [dm3] 2R_5063437_SNP [dm6]	T	A	2.949e^-4	0.792	INTERGENIC	transposable element FlyBase
3R	16338713	3R_16338713_SNP [dm3] 3R_20512991_SNP [dm6]	T	G	2.950e^-4	0.792	UPSTREAM CG4288 INTERGENIC
2L	11887034	2L_11887034_SNP [dm3] 2L_11887034_SNP [dm6]	T	C	2.954e^-4	0.792	INTRON Pde1c
X	10393769	X_10393769_SNP [dm3] X_10499736_SNP [dm6]	A	G	2.956e^-4	0.792	INTRON spri
3R	17871657	3R_17871657_SNP [dm3] 3R_22045935_SNP [dm6]	A	C	2.958e^-4	0.792	INTRON how	TF binding site BDTNP1_TFBS_twi
3L	9786226	3L_9786226_SNP [dm3] 3L_9793126_SNP [dm6]	T	C	2.964e^-4	0.792	INTRON Zasp67
X	22247817	X_22247817_DEL [dm3] X_22845981_DEL [dm6]	GAAAG	G	2.967e^-4	0.792	INTRON fog & 1 other
2L	3845086	2L_3845086_SNP [dm3] 2L_3845086_SNP [dm6]	A	G	2.968e^-4	0.792	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6872446	X_6872446_SNP [dm3] X_6978413_SNP [dm6]	C	A	2.969e^-4	0.792	UPSTREAM ogre INTRON ogre
X	22307317	X_22307317_MNP [dm3] X_22905481_MNP [dm6]	TCA	CTC	2.980e^-4	0.792	INTERGENIC	transposable element FlyBase
3L	3499983	3L_3499983_SNP [dm3] 3L_3499983_SNP [dm6]	C	G	2.980e^-4	0.792	INTRON CG42324
X	6871482	X_6871482_SNP [dm3] X_6977449_SNP [dm6]	T	C	2.985e^-4	0.792	UTR_5_PRIME ogre
3R	27283337	3R_27283337_SNP [dm3] 3R_31457615_SNP [dm6]	T	A	2.986e^-4	0.792	UTR_3_PRIME Gprk2 DOWNSTREAM Gprk2 & 1 other	TF binding site mE1_TFBS_kn mE1_TFBS_ttk
3R	3421426	3R_3421426_SNP [dm3] 3R_7595704_SNP [dm6]	G	C	2.987e^-4	0.792	INTRON CG34127
X	22243805	X_22243805_SNP [dm3] X_22841969_SNP [dm6]	G	A	2.991e^-4	0.792	INTRON fog & 1 other	transposable element FlyBase
2R	17872008	2R_17872008_SNP [dm3] 2R_21984503_SNP [dm6]	C	T	3.001e^-4	0.792	INTERGENIC
2R	8853398	2R_8853398_SNP [dm3] 2R_12965893_SNP [dm6]	C	A	3.004e^-4	0.792	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10384644	X_10384644_DEL [dm3] X_10490611_DEL [dm6]	AA	A	3.010e^-4	0.792	UTR_3_PRIME spri
3R	19646367	3R_19646367_SNP [dm3] 3R_23820645_SNP [dm6]	A	C	3.010e^-4	0.792	UTR_5_PRIME CG34355	TF binding site mE1_TFBS_HSA
3L	13235489	3L_13235489_SNP [dm3] 3L_13242389_SNP [dm6]	A	G	3.011e^-4	0.792	INTRON caps
2R	9273565	2R_9273565_SNP [dm3] 2R_13386060_SNP [dm6]	T	A	3.012e^-4	0.792	INTERGENIC
3L	14218282	3L_14218282_SNP [dm3] 3L_14225182_SNP [dm6]	A	G	3.015e^-4	0.792	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	26128095	3R_26128095_SNP [dm3] 3R_30302373_SNP [dm6]	A	T	3.017e^-4	0.792	INTRON hdc
2L	7193994	2L_7193994_SNP [dm3] 2L_7193994_SNP [dm6]	A	G	3.019e^-4	0.792	DOWNSTREAM CG4502 INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	14207970	3L_14207970_SNP [dm3] 3L_14214870_SNP [dm6]	A	C	3.034e^-4	0.792	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6629304	2L_6629304_SNP [dm3] 2L_6629304_SNP [dm6]	A	T	3.069e^-4	0.792	INTRON Oatp26F
2L	2517939	2L_2517939_SNP [dm3] 2L_2517939_SNP [dm6]	A	G	3.084e^-4	0.792	SYNONYMOUS_CODING CG3528
3L	19102771	3L_19102771_SNP [dm3] 3L_19109671_SNP [dm6]	T	G	3.089e^-4	0.792	INTRON CG14082
3L	3985050	3L_3985050_SNP [dm3] 3L_3985050_SNP [dm6]	A	C	3.099e^-4	0.792	UTR_5_PRIME scrt
2L	5680463	2L_5680463_SNP [dm3] 2L_5680463_SNP [dm6]	G	A	3.099e^-4	0.792	DOWNSTREAM CG12511 INTERGENIC
2L	2444656	2L_2444656_SNP [dm3] 2L_2444656_SNP [dm6]	C	A	3.102e^-4	0.792	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
3L	5815104	3L_5815104_SNP [dm3] 3L_5822004_SNP [dm6]	C	A	3.111e^-4	0.792	INTRON vn
3L	5815112	3L_5815112_SNP [dm3] 3L_5822012_SNP [dm6]	A	C	3.111e^-4	0.792	INTRON vn
3R	13536551	3R_13536551_SNP [dm3] 3R_17710829_SNP [dm6]	C	T	3.112e^-4	0.792	INTRON osa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4354866	3L_4354866_SNP [dm3] 3L_4354866_SNP [dm6]	C	T	3.119e^-4	0.792	INTRON Cip4
3R	27292012	3R_27292012_DEL [dm3] 3R_31466290_DEL [dm6]	TGGGTATTCTT...	T	3.119e^-4	0.792	INTERGENIC
3L	12477620	3L_12477620_SNP [dm3] 3L_12484520_SNP [dm6]	G	T	3.122e^-4	0.792	INTRON CG10663 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6751361	2L_6751361_SNP [dm3] 2L_6751361_SNP [dm6]	C	A	3.123e^-4	0.792	INTRON CG11221
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	3.136e^-4	0.792	INTRON cpo
3L	13134811	3L_13134811_SNP [dm3] 3L_13141711_SNP [dm6]	C	G	3.137e^-4	0.792	INTERGENIC
3L	13833398	3L_13833398_SNP [dm3] 3L_13840298_SNP [dm6]	T	C	3.139e^-4	0.792	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13147977	3L_13147977_SNP [dm3] 3L_13154877_SNP [dm6]	C	G	3.140e^-4	0.792	INTERGENIC
X	6473070	X_6473070_SNP [dm3] X_6579037_SNP [dm6]	C	T	3.143e^-4	0.792	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6582003	2L_6582003_SNP [dm3] 2L_6582003_SNP [dm6]	A	G	3.148e^-4	0.792	INTRON CG11319
3R	14570333	3R_14570333_SNP [dm3] 3R_18744611_SNP [dm6]	C	T	3.149e^-4	0.792	SYNONYMOUS_CODING CG7718	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7127871	2R_7127871_SNP [dm3] 2R_11240366_SNP [dm6]	C	T	3.152e^-4	0.792	UPSTREAM CG13215 INTERGENIC
3L	18479193	3L_18479193_SNP [dm3] 3L_18486093_SNP [dm6]	A	T	3.154e^-4	0.792	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
X	22245570	X_22245570_SNP [dm3] X_22843734_SNP [dm6]	A	T	3.165e^-4	0.792	INTRON fog & 1 other
2L	8757026	2L_8757026_SNP [dm3] 2L_8757026_SNP [dm6]	A	T	3.181e^-4	0.792	INTERGENIC
X	8779822	X_8779822_SNP [dm3] X_8885789_SNP [dm6]	G	T	3.189e^-4	0.792	INTRON Moe
3R	15669067	3R_15669067_SNP [dm3] 3R_19843345_SNP [dm6]	G	T	3.198e^-4	0.792	INTERGENIC
X	22247405	X_22247405_SNP [dm3] X_22845569_SNP [dm6]	C	T	3.199e^-4	0.792	INTRON fog & 1 other
X	22247800	X_22247800_SNP [dm3] X_22845964_SNP [dm6]	A	T	3.199e^-4	0.792	INTRON fog & 1 other
3R	27145064	3R_27145064_SNP [dm3] 3R_31319342_SNP [dm6]	T	G	3.205e^-4	0.792	INTRON CG34347
2L	5680443	2L_5680443_SNP [dm3] 2L_5680443_SNP [dm6]	G	C	3.211e^-4	0.792	DOWNSTREAM CG12511 INTERGENIC
3R	9013233	3R_9013233_SNP [dm3] 3R_13187511_SNP [dm6]	G	C	3.212e^-4	0.792	INTERGENIC
X	9310444	X_9310444_SNP [dm3] X_9416411_SNP [dm6]	A	C	3.222e^-4	0.792	INTRON mgl
3L	7995699	3L_7995699_SNP [dm3] 3L_8002599_SNP [dm6]	G	A	3.226e^-4	0.792	INTRON nmo
2L	14271893	2L_14271893_SNP [dm3] 2L_14271893_SNP [dm6]	A	C	3.231e^-4	0.792	INTRON wb
3L	14204526	3L_14204526_SNP [dm3] 3L_14211426_SNP [dm6]	T	C	3.231e^-4	0.792	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18854086	2R_18854086_SNP [dm3] 2R_22966563_SNP [dm6]	C	T	3.236e^-4	0.792	INTERGENIC
2L	13116188	2L_13116188_DEL [dm3] 2L_13116188_DEL [dm6]	ATCCTCTGCTA...	A	3.238e^-4	0.792	INTERGENIC
X	15254521	X_15254521_SNP [dm3] X_15360488_SNP [dm6]	G	T	3.238e^-4	0.792	UTR_5_PRIME Pp1-13C INTRON acj6
2L	11374024	2L_11374024_SNP [dm3] 2L_11374024_SNP [dm6]	G	A	3.241e^-4	0.792	DOWNSTREAM salr INTERGENIC
3R	25284628	3R_25284628_SNP [dm3] 3R_29458906_SNP [dm6]	T	A	3.250e^-4	0.792	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	13063895	2R_13063895_DEL [dm3] 2R_17176390_DEL [dm6]	ATCTTG	A	3.257e^-4	0.792	INTERGENIC
X	2996814	X_2996814_SNP [dm3] X_3102781_SNP [dm6]	T	C	3.268e^-4	0.792	INTRON kirre
2R	7763901	2R_7763901_SNP [dm3] 2R_11876396_SNP [dm6]	A	G	3.271e^-4	0.792	SPLICE_SITE_REGION CG13185 SYNONYMOUS_CODING CG13185
3L	15025658	3L_15025658_SNP [dm3] 3L_15032558_SNP [dm6]	A	C	3.272e^-4	0.792	INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
X	22276142	X_22276142_SNP [dm3] X_22874306_SNP [dm6]	A	G	3.273e^-4	0.792	NON_SYNONYMOUS_CODING CG34334 INTRON CG42346	TF binding site mE1_TFBS_chinmo
X	22228777	X_22228777_SNP [dm3] X_22826941_SNP [dm6]	C	T	3.274e^-4	0.792	UTR_3_PRIME fog
3L	14204478	3L_14204478_SNP [dm3] 3L_14211378_SNP [dm6]	G	A	3.282e^-4	0.792	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12562334	3L_12562334_SNP [dm3] 3L_12569234_SNP [dm6]	T	C	3.288e^-4	0.792	INTRON sowah	TF binding site mE1_TFBS_cnc
3L	6535316	3L_6535316_SNP [dm3] 3L_6542216_SNP [dm6]	T	C	3.292e^-4	0.792	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	11767900	2L_11767900_SNP [dm3] 2L_11767900_SNP [dm6]	C	T	3.305e^-4	0.792	INTERGENIC
2R	18909378	2R_18909378_INS [dm3] 2R_23021855_INS [dm6]	T	TGGTCTT	3.315e^-4	0.792	INTRON twi & 1 other
3L	7198763	3L_7198763_SNP [dm3] 3L_7205663_SNP [dm6]	G	T	3.328e^-4	0.792	INTERGENIC
3R	14184735	3R_14184735_SNP [dm3] 3R_18359013_SNP [dm6]	G	A	3.333e^-4	0.792	INTRON CG15803
3R	14184752	3R_14184752_SNP [dm3] 3R_18359030_SNP [dm6]	G	A	3.333e^-4	0.792	INTRON CG15803
3R	14184754	3R_14184754_SNP [dm3] 3R_18359032_SNP [dm6]	C	T	3.333e^-4	0.792	INTRON CG15803
3R	14184761	3R_14184761_SNP [dm3] 3R_18359039_SNP [dm6]	C	T	3.333e^-4	0.792	INTRON CG15803
3R	14184842	3R_14184842_SNP [dm3] 3R_18359120_SNP [dm6]	C	T	3.333e^-4	0.792	INTRON CG15803
3R	14184848	3R_14184848_SNP [dm3] 3R_18359126_SNP [dm6]	A	T	3.333e^-4	0.792	INTRON CG15803
3R	14184925	3R_14184925_DEL [dm3] 3R_18359203_DEL [dm6]	AA	A	3.333e^-4	0.792	INTRON CG15803
X	8934187	X_8934187_SNP [dm3] X_9040154_SNP [dm6]	G	A	3.334e^-4	0.792	SYNONYMOUS_CODING CG42388 UTR_5_PRIME CG42388 INTRON CR43836 & 1 other
2L	3562489	2L_3562489_SNP [dm3] 2L_3562489_SNP [dm6]	A	T	3.345e^-4	0.792	DOWNSTREAM CR44747 EXON CR44309
3L	10907434	3L_10907434_SNP [dm3] 3L_10914334_SNP [dm6]	T	A	3.346e^-4	0.792	INTERGENIC
3L	2650100	3L_2650100_SNP [dm3] 3L_2650100_SNP [dm6]	T	A	3.348e^-4	0.792	UTR_3_PRIME CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3L	15592048	3L_15592048_SNP [dm3] 3L_15598948_SNP [dm6]	G	A	3.354e^-4	0.792	INTRON RhoGAP71E
3L	15592059	3L_15592059_SNP [dm3] 3L_15598959_SNP [dm6]	C	G	3.354e^-4	0.792	INTRON RhoGAP71E
3R	21454024	3R_21454024_SNP [dm3] 3R_25628302_SNP [dm6]	G	C	3.359e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13270348	3R_13270348_SNP [dm3] 3R_17444626_SNP [dm6]	G	C	3.371e^-4	0.792	SYNONYMOUS_CODING CG5873
3R	25090071	3R_25090071_SNP [dm3] 3R_29264349_SNP [dm6]	A	T	3.374e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15461936	X_15461936_SNP [dm3] X_15567903_SNP [dm6]	T	C	3.375e^-4	0.792	INTERGENIC
2L	9157195	2L_9157195_SNP [dm3] 2L_9157195_SNP [dm6]	T	G	3.380e^-4	0.792	INTRON CG32982
X	22235724	X_22235724_SNP [dm3] X_22833888_SNP [dm6]	G	T	3.381e^-4	0.792	UPSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	6435974	X_6435974_SNP [dm3] X_6541941_SNP [dm6]	A	C	3.383e^-4	0.792	INTRON CG34417
3L	1725382	3L_1725382_SNP [dm3] 3L_1725382_SNP [dm6]	C	A	3.384e^-4	0.792	SYNONYMOUS_CODING CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	4654207	2L_4654207_SNP [dm3] 2L_4654207_SNP [dm6]	T	C	3.405e^-4	0.792	INTERGENIC
3R	12557689	3R_12557689_DEL [dm3] 3R_16731967_DEL [dm6]	CACTCGAT	C	3.407e^-4	0.792	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2545659	3L_2545659_SNP [dm3] 3L_2545659_SNP [dm6]	A	G	3.409e^-4	0.792	INTRON Spn
3R	14287658	3R_14287658_SNP [dm3] 3R_18461936_SNP [dm6]	A	T	3.418e^-4	0.792	INTRON fru
3L	18479195	3L_18479195_SNP [dm3] 3L_18486095_SNP [dm6]	C	A	3.424e^-4	0.792	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
2L	10616034	2L_10616034_SNP [dm3] 2L_10616034_SNP [dm6]	A	C	3.427e^-4	0.792	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
3R	27284094	3R_27284094_SNP [dm3] 3R_31458372_SNP [dm6]	C	T	3.436e^-4	0.792	DOWNSTREAM lox & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	9767958	3L_9767958_SNP [dm3] 3L_9774858_SNP [dm6]	T	C	3.442e^-4	0.792	INTRON CG8177
2L	15122995	2L_15122995_SNP [dm3] 2L_15122995_SNP [dm6]	A	G	3.450e^-4	0.792	INTERGENIC
2L	11618697	2L_11618697_SNP [dm3] 2L_11618697_SNP [dm6]	A	C	3.451e^-4	0.792	INTRON kek2
3R	26114643	3R_26114643_INS [dm3] 3R_30288921_INS [dm6]	A	AATAA	3.453e^-4	0.792	INTRON hdc
2L	2617660	2L_2617660_INS [dm3] 2L_2617660_INS [dm6]	T	TT	3.457e^-4	0.792	INTERGENIC
3R	14184909	3R_14184909_SNP [dm3] 3R_18359187_SNP [dm6]	T	C	3.457e^-4	0.792	INTRON CG15803
2L	4221866	2L_4221866_SNP [dm3] 2L_4221866_SNP [dm6]	A	G	3.460e^-4	0.792	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	14542409	2L_14542409_DEL [dm3] 2L_14542409_DEL [dm6]	AG	A	3.462e^-4	0.792	INTERGENIC
3L	9732908	3L_9732908_SNP [dm3] 3L_9739808_SNP [dm6]	G	A	3.463e^-4	0.792	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	11153163	3L_11153163_SNP [dm3] 3L_11160063_SNP [dm6]	C	T	3.463e^-4	0.792	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo
3R	3463127	3R_3463127_SNP [dm3] 3R_7637405_SNP [dm6]	T	A	3.467e^-4	0.792	INTRON CG34127
3R	14184807	3R_14184807_SNP [dm3] 3R_18359085_SNP [dm6]	T	A	3.469e^-4	0.792	INTRON CG15803
3R	14184823	3R_14184823_SNP [dm3] 3R_18359101_SNP [dm6]	C	T	3.469e^-4	0.792	INTRON CG15803
2R	14749569	2R_14749569_SNP [dm3] 2R_18862064_SNP [dm6]	T	A	3.474e^-4	0.792	UTR_5_PRIME Jheh3 UPSTREAM CG43069
2L	5141351	2L_5141351_SNP [dm3] 2L_5141351_SNP [dm6]	G	A	3.476e^-4	0.792	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9215219	2R_9215219_SNP [dm3] 2R_13327714_SNP [dm6]	T	C	3.481e^-4	0.792	INTERGENIC
3L	6331913	3L_6331913_SNP [dm3] 3L_6338813_SNP [dm6]	G	A	3.501e^-4	0.792	INTRON CG13300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5961766	3L_5961766_SNP [dm3] 3L_5968666_SNP [dm6]	T	C	3.503e^-4	0.792	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1094108	2L_1094108_SNP [dm3] 2L_1094108_SNP [dm6]	G	A	3.504e^-4	0.792	INTRON CG4629
3L	13145614	3L_13145614_SNP [dm3] 3L_13152514_SNP [dm6]	C	T	3.505e^-4	0.792	INTERGENIC
3R	14358971	3R_14358971_SNP [dm3] 3R_18533249_SNP [dm6]	A	C	3.510e^-4	0.792	INTRON fru
3R	4083482	3R_4083482_SNP [dm3] 3R_8257760_SNP [dm6]	T	C	3.512e^-4	0.792	INTRON mtg	TF binding site mE1_TFBS_inv
2L	13129460	2L_13129460_SNP [dm3] 2L_13129460_SNP [dm6]	T	C	3.514e^-4	0.792	INTERGENIC
2R	7127632	2R_7127632_SNP [dm3] 2R_11240127_SNP [dm6]	G	C	3.526e^-4	0.792	UPSTREAM CG13215 INTERGENIC	TF binding site mE1_TFBS_sens
2R	14814234	2R_14814234_SNP [dm3] 2R_18926729_SNP [dm6]	G	A	3.528e^-4	0.792	INTRON sano
2R	14814247	2R_14814247_SNP [dm3] 2R_18926742_SNP [dm6]	C	A	3.528e^-4	0.792	INTRON sano
2R	16924745	2R_16924745_SNP [dm3] 2R_21037240_SNP [dm6]	G	A	3.534e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17214774	2R_17214774_DEL [dm3] 2R_21327269_DEL [dm6]	CTC	C	3.539e^-4	0.792	UPSTREAM snoRNA:Me28S-A2589b DOWNSTREAM snoRNA:Psi28S-3316a & 2 others INTRON dom	TF binding site mE1_TFBS_cad
2L	3542680	2L_3542680_SNP [dm3] 2L_3542680_SNP [dm6]	G	A	3.548e^-4	0.792	INTRON drm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5979693	2R_5979693_INS [dm3] 2R_10092188_INS [dm6]	A	ATGCTTTGTTGAA...	3.556e^-4	0.792	INTRON CG2269
2L	8989284	2L_8989284_SNP [dm3] 2L_8989284_SNP [dm6]	G	A	3.571e^-4	0.792	UTR_5_PRIME rost UPSTREAM rost INTRON rost
2R	7128103	2R_7128103_SNP [dm3] 2R_11240598_SNP [dm6]	C	A	3.579e^-4	0.792	UPSTREAM CG13215 INTERGENIC
2L	11621354	2L_11621354_SNP [dm3] 2L_11621354_SNP [dm6]	G	T	3.586e^-4	0.792	START_GAINED kek2 UTR_5_PRIME kek2
3R	8985230	3R_8985230_SNP [dm3] 3R_13159508_SNP [dm6]	T	C	3.591e^-4	0.792	INTRON timeout
3L	7826528	3L_7826528_SNP [dm3] 3L_7833428_SNP [dm6]	A	G	3.591e^-4	0.792	UPSTREAM Pdp1 INTRON Pdp1
2L	20034372	2L_20034372_SNP [dm3] 2L_20034372_SNP [dm6]	G	C	3.603e^-4	0.792	INTRON sNPF
2L	20049042	2L_20049042_SNP [dm3] 2L_20049042_SNP [dm6]	G	T	3.603e^-4	0.792	INTRON sNPF
2L	20096150	2L_20096150_SNP [dm3] 2L_20096150_SNP [dm6]	T	C	3.605e^-4	0.792	SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B
3L	1726685	3L_1726685_SNP [dm3] 3L_1726685_SNP [dm6]	T	C	3.606e^-4	0.792	INTRON drpr
3L	6535299	3L_6535299_SNP [dm3] 3L_6542199_SNP [dm6]	T	G	3.607e^-4	0.792	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	16386702	3R_16386702_DEL [dm3] 3R_20560980_DEL [dm6]	GG	G	3.615e^-4	0.792	UTR_5_PRIME CG5191 UPSTREAM CG15922 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7128209	2R_7128209_SNP [dm3] 2R_11240704_SNP [dm6]	C	T	3.616e^-4	0.792	UPSTREAM CG13215 INTERGENIC
2L	6532376	2L_6532376_SNP [dm3] 2L_6532376_SNP [dm6]	A	G	3.625e^-4	0.792	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4608221	3L_4608221_SNP [dm3] 3L_4608221_SNP [dm6]	A	G	3.633e^-4	0.792	INTRON Src64B
3L	2865516	3L_2865516_SNP [dm3] 3L_2865516_SNP [dm6]	A	C	3.638e^-4	0.792	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22277877	X_22277877_SNP [dm3] X_22876041_SNP [dm6]	G	C	3.641e^-4	0.792	DOWNSTREAM CG34334 INTRON CG42346
3L	6931649	3L_6931649_SNP [dm3] 3L_6938549_SNP [dm6]	A	C	3.643e^-4	0.792	DOWNSTREAM CR45412 INTERGENIC
3R	17253651	3R_17253651_SNP [dm3] 3R_21427929_SNP [dm6]	T	C	3.645e^-4	0.792	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	17940680	2R_17940680_SNP [dm3] 2R_22053175_SNP [dm6]	G	A	3.646e^-4	0.792	INTERGENIC
2L	12520749	2L_12520749_SNP [dm3] 2L_12520749_SNP [dm6]	A	G	3.655e^-4	0.792	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
3L	14213771	3L_14213771_SNP [dm3] 3L_14220671_SNP [dm6]	T	C	3.665e^-4	0.792	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21650398	3R_21650398_SNP [dm3] 3R_25824676_SNP [dm6]	A	G	3.667e^-4	0.792	EXON CR44949
2R	13184076	2R_13184076_SNP [dm3] 2R_17296571_SNP [dm6]	C	G	3.671e^-4	0.792	INTRON mbl
2R	949720	2R_949720_SNP [dm3] 2R_5062215_SNP [dm6]	A	G	3.681e^-4	0.792	INTERGENIC	transposable element FlyBase
2R	12930819	2R_12930819_SNP [dm3] 2R_17043314_SNP [dm6]	C	T	3.683e^-4	0.792	NON_SYNONYMOUS_CODING RhoGEF2 UPSTREAM CR45145
3R	13559087	3R_13559087_SNP [dm3] 3R_17733365_SNP [dm6]	C	A	3.690e^-4	0.792	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	22279219	X_22279219_SNP [dm3] X_22877383_SNP [dm6]	C	A	3.690e^-4	0.792	SYNONYMOUS_CODING CG42346
3L	16735945	3L_16735945_SNP [dm3] 3L_16742845_SNP [dm6]	G	T	3.693e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13271239	3L_13271239_DEL [dm3] 3L_13278139_DEL [dm6]	AA	A	3.697e^-4	0.792	UTR_3_PRIME caps	TF binding site mE1_TFBS_cad
3L	19171531	3L_19171531_SNP [dm3] 3L_19178431_SNP [dm6]	A	G	3.706e^-4	0.792	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11465313	3L_11465313_SNP [dm3] 3L_11472213_SNP [dm6]	T	C	3.709e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	5439662	2R_5439662_SNP [dm3] 2R_9552157_SNP [dm6]	C	T	3.720e^-4	0.792	UPSTREAM CR43651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7623931	3R_7623931_SNP [dm3] 3R_11798209_SNP [dm6]	T	C	3.723e^-4	0.792	INTRON ClC-a
2L	8757141	2L_8757141_SNP [dm3] 2L_8757141_SNP [dm6]	T	C	3.728e^-4	0.792	INTERGENIC
3L	18617986	3L_18617986_SNP [dm3] 3L_18624886_SNP [dm6]	A	T	3.732e^-4	0.792	DOWNSTREAM bora INTERGENIC	TF binding site mE1_TFBS_sens
3R	26422244	3R_26422244_SNP [dm3] 3R_30596522_SNP [dm6]	A	G	3.739e^-4	0.792	UPSTREAM CG2246 & 1 other INTRON CG2246	TF binding site mE1_TFBS_HSA
3R	26422298	3R_26422298_SNP [dm3] 3R_30596576_SNP [dm6]	A	G	3.739e^-4	0.792	UPSTREAM CG2246 & 1 other INTRON CG2246	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12167433	2L_12167433_SNP [dm3] 2L_12167433_SNP [dm6]	C	T	3.741e^-4	0.792	DOWNSTREAM ZnT33D INTRON CG31760
3L	21158015	3L_21158015_SNP [dm3] 3L_21164915_SNP [dm6]	G	A	3.758e^-4	0.792	INTRON Ac78C
2R	3399301	2R_3399301_SNP [dm3] 2R_7511796_SNP [dm6]	A	T	3.766e^-4	0.792	INTRON az2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14223923	3L_14223923_SNP [dm3] 3L_14230823_SNP [dm6]	T	C	3.772e^-4	0.792	SYNONYMOUS_CODING nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6740137	2R_6740137_SNP [dm3] 2R_10852632_SNP [dm6]	G	A	3.793e^-4	0.792	UPSTREAM CR45136 INTRON CG30015
3R	8621942	3R_8621942_SNP [dm3] 3R_12796220_SNP [dm6]	C	T	3.793e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8623886	3R_8623886_SNP [dm3] 3R_12798164_SNP [dm6]	G	A	3.793e^-4	0.792	INTERGENIC
3R	8623939	3R_8623939_SNP [dm3] 3R_12798217_SNP [dm6]	A	G	3.793e^-4	0.792	INTERGENIC
3R	8624076	3R_8624076_SNP [dm3] 3R_12798354_SNP [dm6]	T	A	3.793e^-4	0.792	INTERGENIC
3R	8625277	3R_8625277_SNP [dm3] 3R_12799555_SNP [dm6]	T	C	3.793e^-4	0.792	INTERGENIC
3R	8625968	3R_8625968_DEL [dm3] 3R_12800246_DEL [dm6]	TG	C	3.793e^-4	0.792	INTERGENIC
3R	8626061	3R_8626061_SNP [dm3] 3R_12800339_SNP [dm6]	T	A	3.793e^-4	0.792	INTERGENIC
3R	8626472	3R_8626472_DEL [dm3] 3R_12800750_DEL [dm6]	CCATC	T	3.793e^-4	0.792	INTERGENIC
3R	8626478	3R_8626478_INS [dm3] 3R_12800756_INS [dm6]	C	CGATGG	3.793e^-4	0.792	INTERGENIC
3R	8627906	3R_8627906_SNP [dm3] 3R_12802184_SNP [dm6]	C	T	3.793e^-4	0.792	INTERGENIC
3R	8632757	3R_8632757_SNP [dm3] 3R_12807035_SNP [dm6]	C	T	3.793e^-4	0.792	INTERGENIC
3R	8633796	3R_8633796_SNP [dm3] 3R_12808074_SNP [dm6]	T	A	3.793e^-4	0.792	INTERGENIC
3R	8635234	3R_8635234_SNP [dm3] 3R_12809512_SNP [dm6]	C	G	3.793e^-4	0.792	INTERGENIC
2R	19017083	2R_19017083_SNP [dm3] 2R_23129560_SNP [dm6]	G	A	3.800e^-4	0.792	INTRON CG3215
2R	20139148	2R_20139148_SNP [dm3] 2R_24251625_SNP [dm6]	G	A	3.816e^-4	0.792	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	14184907	3R_14184907_SNP [dm3] 3R_18359185_SNP [dm6]	C	A	3.821e^-4	0.792	INTRON CG15803
3L	16764486	3L_16764486_SNP [dm3] 3L_16771386_SNP [dm6]	C	T	3.842e^-4	0.792	INTRON Nrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16995233	2L_16995233_SNP [dm3] 2L_16995233_SNP [dm6]	T	A	3.857e^-4	0.792	INTERGENIC
2L	13313637	2L_13313637_SNP [dm3] 2L_13313637_SNP [dm6]	C	A	3.858e^-4	0.792	INTRON CG43778	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14271945	2L_14271945_SNP [dm3] 2L_14271945_SNP [dm6]	C	T	3.863e^-4	0.792	INTRON wb
2L	14272007	2L_14272007_SNP [dm3] 2L_14272007_SNP [dm6]	G	A	3.867e^-4	0.792	INTRON wb
2L	14272032	2L_14272032_SNP [dm3] 2L_14272032_SNP [dm6]	G	A	3.867e^-4	0.792	INTRON wb
2L	14272035	2L_14272035_SNP [dm3] 2L_14272035_SNP [dm6]	C	A	3.867e^-4	0.792	INTRON wb
2L	7727330	2L_7727330_DEL [dm3] 2L_7727330_DEL [dm6]	TCCGCT	T	3.867e^-4	0.792	UTR_3_PRIME CG13796
2R	1081318	2R_1081318_SNP [dm3] 2R_5193813_SNP [dm6]	A	T	3.871e^-4	0.792	INTRON Nipped-A
3R	16368777	3R_16368777_SNP [dm3] 3R_20543055_SNP [dm6]	A	G	3.888e^-4	0.792	INTRON Stat92E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	18483615	3L_18483615_SNP [dm3] 3L_18490515_SNP [dm6]	G	C	3.888e^-4	0.792	INTRON AstC-R2
X	22221052	X_22221052_SNP [dm3] X_22819216_SNP [dm6]	G	A	3.891e^-4	0.792	INTERGENIC	transposable element FlyBase
X	22221054	X_22221054_SNP [dm3] X_22819218_SNP [dm6]	C	G	3.891e^-4	0.792	INTERGENIC	transposable element FlyBase
3L	14213660	3L_14213660_DEL [dm3] 3L_14220560_DEL [dm6]	GCCTCTTTAAAAATCAAG...	G	3.891e^-4	0.792	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27139293	3R_27139293_SNP [dm3] 3R_31313571_SNP [dm6]	G	T	3.893e^-4	0.792	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18196697	3L_18196697_SNP [dm3] 3L_18203597_SNP [dm6]	T	C	3.901e^-4	0.792	UTR_3_PRIME CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	3.904e^-4	0.792	INTRON Pde9
2R	13545835	2R_13545835_SNP [dm3] 2R_17658330_SNP [dm6]	T	C	3.913e^-4	0.792	INTRON CCHa1-R
2R	10326892	2R_10326892_SNP [dm3] 2R_14439387_SNP [dm6]	A	C	3.913e^-4	0.792	INTRON Oaz
3L	5224216	3L_5224216_SNP [dm3] 3L_5231116_SNP [dm6]	G	A	3.914e^-4	0.792	INTRON shep
X	11419787	X_11419787_SNP [dm3] X_11525754_SNP [dm6]	C	T	3.920e^-4	0.792	INTRON Drak
2L	8439947	2L_8439947_SNP [dm3] 2L_8439947_SNP [dm6]	G	T	3.921e^-4	0.792	NON_SYNONYMOUS_CODING mus201
2L	8439962	2L_8439962_SNP [dm3] 2L_8439962_SNP [dm6]	C	T	3.921e^-4	0.792	SYNONYMOUS_CODING mus201
3L	1984524	3L_1984524_DEL [dm3] 3L_1984524_DEL [dm6]	GGG	G	3.929e^-4	0.792	INTERGENIC
3L	1984528	3L_1984528_SNP [dm3] 3L_1984528_SNP [dm6]	T	A	3.929e^-4	0.792	INTERGENIC
X	12440742	X_12440742_INS [dm3] X_12546709_INS [dm6]	T	TGTGTTT	3.931e^-4	0.792	UTR_5_PRIME CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26442472	3R_26442472_SNP [dm3] 3R_30616750_SNP [dm6]	G	A	3.931e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22361917	X_22361917_SNP [dm3] X_22960081_SNP [dm6]	A	G	3.937e^-4	0.792	UTR_5_PRIME CG40486 DOWNSTREAM CG40485	TF binding site mE1_TFBS_cad
X	22361941	X_22361941_SNP [dm3] X_22960105_SNP [dm6]	C	T	3.937e^-4	0.792	UPSTREAM CG40486 DOWNSTREAM CG40485 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13129461	2L_13129461_SNP [dm3] 2L_13129461_SNP [dm6]	G	A	3.941e^-4	0.792	INTERGENIC
2L	13129615	2L_13129615_DEL [dm3] 2L_13129615_DEL [dm6]	TGAAAAATAAAT...	T	3.941e^-4	0.792	UPSTREAM CG5122 INTERGENIC
2L	7820473	2L_7820473_SNP [dm3] 2L_7820473_SNP [dm6]	T	C	3.941e^-4	0.792	UTR_3_PRIME LanB1 UPSTREAM CG7115 DOWNSTREAM CR45008
3L	14203907	3L_14203907_SNP [dm3] 3L_14210807_SNP [dm6]	A	G	3.941e^-4	0.792	INTRON nuf
3L	14213418	3L_14213418_SNP [dm3] 3L_14220318_SNP [dm6]	A	C	3.941e^-4	0.792	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16381807	3R_16381807_DEL [dm3] 3R_20556085_DEL [dm6]	GCCCGAATG	G	3.941e^-4	0.792	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16387752	3R_16387752_SNP [dm3] 3R_20562030_SNP [dm6]	G	A	3.941e^-4	0.792	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21638596	3R_21638596_SNP [dm3] 3R_25812874_SNP [dm6]	G	A	3.941e^-4	0.792	SYNONYMOUS_CODING Acam UTR_3_PRIME CG17770
3R	8625600	3R_8625600_SNP [dm3] 3R_12799878_SNP [dm6]	A	G	3.941e^-4	0.792	INTERGENIC
3R	8636236	3R_8636236_SNP [dm3] 3R_12810514_SNP [dm6]	A	T	3.941e^-4	0.792	DOWNSTREAM CG31345 INTERGENIC
X	14420466	X_14420466_SNP [dm3] X_14526433_SNP [dm6]	G	T	3.941e^-4	0.792	INTERGENIC
X	7899022	X_7899022_SNP [dm3] X_8004989_SNP [dm6]	C	T	3.941e^-4	0.792	INTRON Tbh
3R	27438948	3R_27438948_INS [dm3] 3R_31613226_INS [dm6]	T	TGAAT	3.946e^-4	0.792	UPSTREAM CycG INTRON Med	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4028110	3L_4028110_SNP [dm3] 3L_4028110_SNP [dm6]	C	T	3.947e^-4	0.792	SYNONYMOUS_CODING Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_inv
3L	4353739	3L_4353739_SNP [dm3] 3L_4353739_SNP [dm6]	T	G	3.952e^-4	0.792	INTRON Cip4
3R	6745205	3R_6745205_SNP [dm3] 3R_10919483_SNP [dm6]	T	C	3.964e^-4	0.792	INTERGENIC
3L	15762094	3L_15762094_SNP [dm3] 3L_15768994_SNP [dm6]	C	T	3.969e^-4	0.792	INTERGENIC
2R	795184	2R_795184_SNP [dm3] 2R_4907679_SNP [dm6]	G	A	3.976e^-4	0.792	UTR_5_PRIME CG44102
2L	1655929	2L_1655929_SNP [dm3] 2L_1655929_SNP [dm6]	A	G	3.977e^-4	0.792	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	1657259	2L_1657259_INS [dm3] 2L_1657259_INS [dm6]	T	TT	3.980e^-4	0.792	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21143634	3L_21143634_SNP [dm3] 3L_21150534_SNP [dm6]	T	C	3.983e^-4	0.792	UTR_5_PRIME Ac78C INTRON Ac78C
3L	5898066	3L_5898066_SNP [dm3] 3L_5904966_SNP [dm6]	C	T	3.990e^-4	0.792	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
2L	11939175	2L_11939175_SNP [dm3] 2L_11939175_SNP [dm6]	A	C	4.000e^-4	0.792	SYNONYMOUS_CODING Or33c	TF binding site mE1_TFBS_cad
X	22277912	X_22277912_SNP [dm3] X_22876076_SNP [dm6]	C	T	4.010e^-4	0.792	DOWNSTREAM CG34334 INTRON CG42346
3R	27162848	3R_27162848_SNP [dm3] 3R_31337126_SNP [dm6]	A	T	4.014e^-4	0.792	INTRON CG34347
2L	20095946	2L_20095946_SNP [dm3] 2L_20095946_SNP [dm6]	G	A	4.017e^-4	0.792	SPLICE_SITE_REGION nesd DOWNSTREAM mRpS18B INTRON nesd
3R	25009934	3R_25009934_SNP [dm3] 3R_29184212_SNP [dm6]	C	A	4.020e^-4	0.792	INTRON CG14509
3L	6224240	3L_6224240_SNP [dm3] 3L_6231140_SNP [dm6]	G	A	4.023e^-4	0.792	DOWNSTREAM CG13299 INTERGENIC
2L	9631362	2L_9631362_SNP [dm3] 2L_9631362_SNP [dm6]	G	T	4.023e^-4	0.792	INTERGENIC
3R	9584050	3R_9584050_SNP [dm3] 3R_13758328_SNP [dm6]	T	G	4.023e^-4	0.792	INTRON CG34383	TF binding site mE1_TFBS_cad
3L	7993209	3L_7993209_DEL [dm3] 3L_8000109_DEL [dm6]	AA	A	4.045e^-4	0.792	INTRON nmo
2L	3783360	2L_3783360_SNP [dm3] 2L_3783360_SNP [dm6]	A	G	4.048e^-4	0.792	UTR_3_PRIME bowl
2L	14271864	2L_14271864_SNP [dm3] 2L_14271864_SNP [dm6]	T	C	4.059e^-4	0.792	INTRON wb
2L	14271992	2L_14271992_SNP [dm3] 2L_14271992_SNP [dm6]	C	T	4.059e^-4	0.792	INTRON wb
3R	15976887	3R_15976887_SNP [dm3] 3R_20151165_SNP [dm6]	G	A	4.061e^-4	0.792	INTERGENIC
2L	13129552	2L_13129552_SNP [dm3] 2L_13129552_SNP [dm6]	T	A	4.062e^-4	0.792	INTERGENIC
3R	17518817	3R_17518817_SNP [dm3] 3R_21693095_SNP [dm6]	T	C	4.077e^-4	0.792	INTRON CG31176
3R	1604903	3R_1604903_SNP [dm3] 3R_5779181_SNP [dm6]	T	A	4.085e^-4	0.792	UPSTREAM jagn INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	1604946	3R_1604946_SNP [dm3] 3R_5779224_SNP [dm6]	C	T	4.085e^-4	0.792	UPSTREAM jagn INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	7586354	3R_7586354_SNP [dm3] 3R_11760632_SNP [dm6]	G	A	4.088e^-4	0.792	UPSTREAM Lk6 INTRON Lk6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22278392	X_22278392_SNP [dm3] X_22876556_SNP [dm6]	C	T	4.089e^-4	0.792	INTRON CG42346
3R	17327967	3R_17327967_DEL [dm3] 3R_21502245_DEL [dm6]	TA	T	4.089e^-4	0.792	SPLICE_SITE_REGION C15 INTRON C15	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	13558709	3R_13558709_SNP [dm3] 3R_17732987_SNP [dm6]	A	G	4.090e^-4	0.792	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	13424543	2L_13424543_SNP [dm3] 2L_13424543_SNP [dm6]	C	T	4.091e^-4	0.792	INTRON CG42784
3L	4693692	3L_4693692_SNP [dm3] 3L_4693692_SNP [dm6]	A	G	4.107e^-4	0.792	DOWNSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11395216	2L_11395216_SNP [dm3] 2L_11395216_SNP [dm6]	T	A	4.107e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs
2L	5141569	2L_5141569_INS [dm3] 2L_5141569_INS [dm6]	G	GCATG	4.107e^-4	0.792	INTRON Msp300	TF binding site mE1_TFBS_HSA
3R	17870613	3R_17870613_SNP [dm3] 3R_22044891_SNP [dm6]	A	G	4.109e^-4	0.792	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17034827	2R_17034827_SNP [dm3] 2R_21147322_SNP [dm6]	C	T	4.114e^-4	0.792	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17834296	3L_17834296_SNP [dm3] 3L_17841196_SNP [dm6]	G	A	4.121e^-4	0.792	UPSTREAM CR45175 DOWNSTREAM CG5567 INTRON CG5577
3R	18666465	3R_18666465_SNP [dm3] 3R_22840743_SNP [dm6]	C	G	4.123e^-4	0.792	INTERGENIC
3R	21595285	3R_21595285_SNP [dm3] 3R_25769563_SNP [dm6]	T	C	4.128e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10893239	2R_10893239_DEL [dm3] 2R_15005734_DEL [dm6]	TA	T	4.132e^-4	0.792	INTERGENIC
2L	9234870	2L_9234870_SNP [dm3] 2L_9234870_SNP [dm6]	G	A	4.133e^-4	0.792	INTRON tai	TF binding site mE1_TFBS_inv
2R	8876804	2R_8876804_SNP [dm3] 2R_12989299_SNP [dm6]	G	A	4.138e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19007088	3R_19007088_SNP [dm3] 3R_23181366_SNP [dm6]	A	T	4.150e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
2L	5555818	2L_5555818_SNP [dm3] 2L_5555818_SNP [dm6]	C	A	4.155e^-4	0.792	DOWNSTREAM CG14017 INTRON GluRIIA
X	10905730	X_10905730_SNP [dm3] X_11011697_SNP [dm6]	G	T	4.158e^-4	0.792	INTRON CG42339	TF binding site mE1_TFBS_HSA
3L	22835296	3L_22835296_SNP [dm3] 3L_22842196_SNP [dm6]	A	G	4.159e^-4	0.792	DOWNSTREAM CR45659 INTERGENIC
2L	20043709	2L_20043709_SNP [dm3] 2L_20043709_SNP [dm6]	A	G	4.164e^-4	0.792	INTRON sNPF
2L	20095976	2L_20095976_SNP [dm3] 2L_20095976_SNP [dm6]	A	C	4.175e^-4	0.792	DOWNSTREAM mRpS18B INTRON nesd
2L	20096147	2L_20096147_SNP [dm3] 2L_20096147_SNP [dm6]	A	G	4.175e^-4	0.792	SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B
2L	20096185	2L_20096185_SNP [dm3] 2L_20096185_SNP [dm6]	A	T	4.175e^-4	0.792	UTR_3_PRIME nesd DOWNSTREAM mRpS18B
2L	16636468	2L_16636468_SNP [dm3] 2L_16636468_SNP [dm6]	T	A	4.191e^-4	0.792	INTRON CG42389
3L	10436971	3L_10436971_SNP [dm3] 3L_10443871_SNP [dm6]	A	G	4.191e^-4	0.792	INTERGENIC
3L	10436972	3L_10436972_SNP [dm3] 3L_10443872_SNP [dm6]	C	A	4.191e^-4	0.792	INTERGENIC
3R	25186281	3R_25186281_SNP [dm3] 3R_29360559_SNP [dm6]	A	G	4.199e^-4	0.792	INTERGENIC
2L	7193986	2L_7193986_SNP [dm3] 2L_7193986_SNP [dm6]	C	T	4.206e^-4	0.792	DOWNSTREAM CG4502 INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	949657	2R_949657_SNP [dm3] 2R_5062152_SNP [dm6]	A	C	4.209e^-4	0.792	INTERGENIC
2L	3226406	2L_3226406_SNP [dm3] 2L_3226406_SNP [dm6]	G	C	4.222e^-4	0.792	INTERGENIC
2L	13111221	2L_13111221_SNP [dm3] 2L_13111221_SNP [dm6]	T	C	4.223e^-4	0.792	INTERGENIC
2L	2902343	2L_2902343_SNP [dm3] 2L_2902343_SNP [dm6]	A	C	4.248e^-4	0.792	INTRON lilli
3R	14564464	3R_14564464_DEL [dm3] 3R_18738742_DEL [dm6]	ATA	A	4.255e^-4	0.792	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9768110	3L_9768110_SNP [dm3] 3L_9775010_SNP [dm6]	T	G	4.255e^-4	0.792	INTRON CG8177
2L	12520841	2L_12520841_SNP [dm3] 2L_12520841_SNP [dm6]	T	C	4.259e^-4	0.792	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
X	22234965	X_22234965_DEL [dm3] X_22833129_DEL [dm6]	AA	A	4.262e^-4	0.792	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	950036	2R_950036_SNP [dm3] 2R_5062531_SNP [dm6]	G	T	4.269e^-4	0.792	INTERGENIC
2L	20136866	2L_20136866_SNP [dm3] 2L_20136866_SNP [dm6]	T	C	4.269e^-4	0.792	INTERGENIC
3L	1962956	3L_1962956_SNP [dm3] 3L_1962956_SNP [dm6]	A	G	4.272e^-4	0.792	UTR_5_PRIME mv UPSTREAM SCOT
2R	17851548	2R_17851548_SNP [dm3] 2R_21964043_SNP [dm6]	T	A	4.273e^-4	0.792	UPSTREAM ppk9 INTERGENIC
3L	13248909	3L_13248909_DEL [dm3] 3L_13255809_DEL [dm6]	TTGCCAGC	G	4.276e^-4	0.792	INTRON caps
3R	4909346	3R_4909346_SNP [dm3] 3R_9083624_SNP [dm6]	C	A	4.277e^-4	0.792	INTRON pum
3R	23154025	3R_23154025_SNP [dm3] 3R_27328303_SNP [dm6]	G	T	4.280e^-4	0.792	INTERGENIC
3L	1984529	3L_1984529_SNP [dm3] 3L_1984529_SNP [dm6]	A	T	4.282e^-4	0.792	INTERGENIC
X	22234775	X_22234775_SNP [dm3] X_22832939_SNP [dm6]	A	C	4.301e^-4	0.792	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19006806	3R_19006806_DEL [dm3] 3R_23181084_DEL [dm6]	GTG	G	4.306e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
3R	19006812	3R_19006812_SNP [dm3] 3R_23181090_SNP [dm6]	A	T	4.306e^-4	0.792	UPSTREAM Irk1 INTRON Irk1
3L	5808770	3L_5808770_SNP [dm3] 3L_5815670_SNP [dm6]	G	C	4.307e^-4	0.792	INTRON vn
3R	8612998	3R_8612998_SNP [dm3] 3R_12787276_SNP [dm6]	C	T	4.308e^-4	0.792	INTERGENIC
X	14423678	X_14423678_SNP [dm3] X_14529645_SNP [dm6]	A	G	4.315e^-4	0.792	INTERGENIC
2R	17035236	2R_17035236_SNP [dm3] 2R_21147731_SNP [dm6]	C	T	4.322e^-4	0.792	NON_SYNONYMOUS_CODING CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
3L	20564312	3L_20564312_SNP [dm3] 3L_20571212_SNP [dm6]	G	C	4.332e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11956342	2R_11956342_SNP [dm3] 2R_16068837_SNP [dm6]	C	T	4.332e^-4	0.792	INTERGENIC
2L	3899187	2L_3899187_SNP [dm3] 2L_3899187_SNP [dm6]	A	C	4.332e^-4	0.792	INTRON capu
2R	896929	2R_896929_SNP [dm3] 2R_5009424_SNP [dm6]	C	T	4.337e^-4	0.792	INTRON Ir41a
2L	14271860	2L_14271860_DEL [dm3] 2L_14271860_DEL [dm6]	TT	T	4.344e^-4	0.792	INTRON wb
2L	12167523	2L_12167523_SNP [dm3] 2L_12167523_SNP [dm6]	G	A	4.346e^-4	0.792	DOWNSTREAM ZnT33D INTRON CG31760
2L	20096069	2L_20096069_SNP [dm3] 2L_20096069_SNP [dm6]	T	C	4.350e^-4	0.792	SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B
2L	8621795	2L_8621795_SNP [dm3] 2L_8621795_SNP [dm6]	G	A	4.353e^-4	0.792	INTRON Sema-1a
2R	7406628	2R_7406628_SNP [dm3] 2R_11519123_SNP [dm6]	G	A	4.360e^-4	0.792	INTERGENIC
2R	6991601	2R_6991601_SNP [dm3] 2R_11104096_SNP [dm6]	T	A	4.361e^-4	0.792	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19337470	2R_19337470_SNP [dm3] 2R_23449947_SNP [dm6]	T	C	4.362e^-4	0.792	INTRON CG43795
3L	18746363	3L_18746363_SNP [dm3] 3L_18753263_SNP [dm6]	G	A	4.364e^-4	0.792	SYNONYMOUS_CODING ftz-f1
2L	15955001	2L_15955001_SNP [dm3] 2L_15955001_SNP [dm6]	A	G	4.369e^-4	0.792	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
3L	14229151	3L_14229151_SNP [dm3] 3L_14236051_SNP [dm6]	A	C	4.372e^-4	0.792	UPSTREAM CG7906 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	5237954	3R_5237954_SNP [dm3] 3R_9412232_SNP [dm6]	G	T	4.377e^-4	0.792	UTR_5_PRIME Task7 UPSTREAM alpha-Man-II	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr
X	16032658	X_16032658_SNP [dm3] X_16138625_SNP [dm6]	A	G	4.388e^-4	0.792	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10079341	3L_10079341_SNP [dm3] 3L_10086241_SNP [dm6]	G	A	4.395e^-4	0.792	DOWNSTREAM CG14160 INTRON dpr6
3R	25090139	3R_25090139_SNP [dm3] 3R_29264417_SNP [dm6]	G	A	4.400e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26114414	3R_26114414_SNP [dm3] 3R_30288692_SNP [dm6]	C	T	4.400e^-4	0.792	INTRON hdc
2R	13259893	2R_13259893_SNP [dm3] 2R_17372388_SNP [dm6]	C	T	4.402e^-4	0.792	INTRON mbl
X	6436010	X_6436010_SNP [dm3] X_6541977_SNP [dm6]	A	G	4.405e^-4	0.792	INTRON CG34417
3L	6165168	3L_6165168_SNP [dm3] 3L_6172068_SNP [dm6]	T	C	4.409e^-4	0.792	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8957972	3R_8957972_SNP [dm3] 3R_13132250_SNP [dm6]	G	A	4.413e^-4	0.792	NON_SYNONYMOUS_CODING 2mit DOWNSTREAM CR45109 INTRON timeout
3R	17558711	3R_17558711_SNP [dm3] 3R_21732989_SNP [dm6]	A	T	4.415e^-4	0.792	INTERGENIC
2L	5598642	2L_5598642_SNP [dm3] 2L_5598642_SNP [dm6]	G	A	4.418e^-4	0.792	DOWNSTREAM CG18266 INTERGENIC
2R	17041937	2R_17041937_SNP [dm3] 2R_21154432_SNP [dm6]	G	A	4.422e^-4	0.792	INTRON CG30389	TF binding site mE1_TFBS_cad
3R	8616984	3R_8616984_SNP [dm3] 3R_12791262_SNP [dm6]	T	C	4.442e^-4	0.792	INTERGENIC
2L	3408777	2L_3408777_SNP [dm3] 2L_3408777_SNP [dm6]	T	A	4.448e^-4	0.792	INTRON pgant2
3R	14447590	3R_14447590_SNP [dm3] 3R_18621868_SNP [dm6]	A	T	4.450e^-4	0.792	UPSTREAM CG14304 INTRON qin
2L	5735740	2L_5735740_SNP [dm3] 2L_5735740_SNP [dm6]	T	A	4.450e^-4	0.792	INTRON CG11030 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	12630969	3L_12630969_SNP [dm3] 3L_12637869_SNP [dm6]	G	A	4.457e^-4	0.792	INTRON CR32111
3R	26248862	3R_26248862_SNP [dm3] 3R_30423140_SNP [dm6]	C	G	4.457e^-4	0.792	UTR_3_PRIME CG15535 UPSTREAM CG2217 & 2 others DOWNSTREAM CG15535	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7163333	3R_7163333_SNP [dm3] 3R_11337611_SNP [dm6]	C	T	4.458e^-4	0.792	INTRON pros
X	14923676	X_14923676_SNP [dm3] X_15029643_SNP [dm6]	C	G	4.461e^-4	0.792	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi
2R	13410688	2R_13410688_DEL [dm3] 2R_17523183_DEL [dm6]	ATTAT	A	4.472e^-4	0.792	INTRON Patronin
2R	949025	2R_949025_SNP [dm3] 2R_5061520_SNP [dm6]	T	C	4.481e^-4	0.792	INTERGENIC	transposable element FlyBase
X	8684317	X_8684317_SNP [dm3] X_8790284_SNP [dm6]	A	T	4.489e^-4	0.792	INTRON Lim1
2L	13120396	2L_13120396_SNP [dm3] 2L_13120396_SNP [dm6]	A	T	4.509e^-4	0.792	UTR_3_PRIME CG43050
X	11419702	X_11419702_SNP [dm3] X_11525669_SNP [dm6]	C	T	4.510e^-4	0.792	INTRON Drak
2L	3470578	2L_3470578_SNP [dm3] 2L_3470578_SNP [dm6]	T	C	4.519e^-4	0.792	NON_SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19988033	2R_19988033_SNP [dm3] 2R_24100510_SNP [dm6]	A	T	4.523e^-4	0.792	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19988054	2R_19988054_SNP [dm3] 2R_24100531_SNP [dm6]	C	T	4.523e^-4	0.792	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15461151	2L_15461151_SNP [dm3] 2L_15461151_SNP [dm6]	G	A	4.535e^-4	0.792	INTERGENIC
X	3625122	X_3625122_SNP [dm3] X_3731089_SNP [dm6]	A	G	4.536e^-4	0.792	INTRON tlk
X	15414235	X_15414235_SNP [dm3] X_15520202_SNP [dm6]	A	G	4.540e^-4	0.792	INTRON Ac13E
X	14456447	X_14456447_SNP [dm3] X_14562414_SNP [dm6]	G	A	4.549e^-4	0.792	INTERGENIC
3L	18256516	3L_18256516_SNP [dm3] 3L_18263416_SNP [dm6]	A	G	4.549e^-4	0.792	INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU002 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results