DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.229e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3016 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13477474	3R_13477474_SNP [dm3] 3R_17651752_SNP [dm6]	G	C	1.905e^-7	0.221	DOWNSTREAM CR45223 INTRON CG14322
2L	6191575	2L_6191575_DEL [dm3] 2L_6191575_DEL [dm6]	CCCGAAATGAA...	TGTTCATTT	2.375e^-7	0.221	INTRON CG34380	TF binding site mE1_TFBS_inv
2L	5006057	2L_5006057_SNP [dm3] 2L_5006057_SNP [dm6]	T	A	5.331e^-7	0.331	INTRON Rtnl1
3R	13477448	3R_13477448_DEL [dm3] 3R_17651726_DEL [dm6]	TTTTAAGAACTGTGAACTTG...	T	1.265e^-6	0.381	DOWNSTREAM CR45223 INTRON CG14322
3R	13477517	3R_13477517_SNP [dm3] 3R_17651795_SNP [dm6]	T	A	1.539e^-6	0.381	DOWNSTREAM CR45223 INTRON CG14322
3R	13477561	3R_13477561_SNP [dm3] 3R_17651839_SNP [dm6]	A	T	1.539e^-6	0.381	DOWNSTREAM CR45223 INTRON CG14322
2R	8527807	2R_8527807_SNP [dm3] 2R_12640302_SNP [dm6]	G	A	1.640e^-6	0.381	NON_SYNONYMOUS_CODING Iswi DOWNSTREAM CG8785	TF binding site mE1_TFBS_cad
2R	8533998	2R_8533998_SNP [dm3] 2R_12646493_SNP [dm6]	C	G	1.640e^-6	0.381	INTRON CG8785
3R	13478903	3R_13478903_SNP [dm3] 3R_17653181_SNP [dm6]	C	T	1.954e^-6	0.404	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20370005	X_20370005_SNP [dm3] X_20498978_SNP [dm6]	G	A	2.792e^-6	0.455	INTRON RhoGAP19D
3L	9610560	3L_9610560_SNP [dm3] 3L_9617460_SNP [dm6]	G	A	3.447e^-6	0.455	INTRON LanB2	TF binding site mE1_TFBS_inv
3R	22071117	3R_22071117_SNP [dm3] 3R_26245395_SNP [dm6]	G	A	3.503e^-6	0.455	INTRON CR42745
3R	1806427	3R_1806427_SNP [dm3] 3R_5980705_SNP [dm6]	A	T	3.606e^-6	0.455	INTERGENIC
3L	6247404	3L_6247404_SNP [dm3] 3L_6254304_SNP [dm6]	A	C	3.766e^-6	0.455	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20488836	2L_20488836_SNP [dm3] 2L_20488836_SNP [dm6]	G	T	4.407e^-6	0.455	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9610803	3L_9610803_SNP [dm3] 3L_9617703_SNP [dm6]	G	A	4.484e^-6	0.455	INTRON LanB2
3R	13478789	3R_13478789_SNP [dm3] 3R_17653067_SNP [dm6]	T	C	4.760e^-6	0.455	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	4713655	3R_4713655_SNP [dm3] 3R_8887933_SNP [dm6]	A	C	5.022e^-6	0.455	INTRON pyd
3R	20714808	3R_20714808_SNP [dm3] 3R_24889086_SNP [dm6]	G	T	5.378e^-6	0.455	INTRON CG31121
3L	2603760	3L_2603760_SNP [dm3] 3L_2603760_SNP [dm6]	G	A	5.433e^-6	0.455	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20862947	2L_20862947_SNP [dm3] 2L_20862947_SNP [dm6]	A	C	5.467e^-6	0.455	INTRON CR9337
2R	11510317	2R_11510317_SNP [dm3] 2R_15622812_SNP [dm6]	T	A	5.982e^-6	0.455	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	20410696	3R_20410696_SNP [dm3] 3R_24584974_SNP [dm6]	T	C	7.086e^-6	0.455	NON_SYNONYMOUS_CODING CG13625 UPSTREAM mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16121101	2R_16121101_SNP [dm3] 2R_20233596_SNP [dm6]	G	A	7.347e^-6	0.455	SYNONYMOUS_CODING CG11044 DOWNSTREAM tRNA:G3:56EFb
3R	13488585	3R_13488585_SNP [dm3] 3R_17662863_SNP [dm6]	T	C	7.431e^-6	0.455	SYNONYMOUS_CODING CG14322
3R	13472285	3R_13472285_SNP [dm3] 3R_17646563_SNP [dm6]	A	G	7.669e^-6	0.455	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	3508450	2R_3508450_SNP [dm3] 2R_7620945_SNP [dm6]	A	T	7.925e^-6	0.455	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3508452	2R_3508452_SNP [dm3] 2R_7620947_SNP [dm6]	C	A	7.925e^-6	0.455	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11512353	2R_11512353_SNP [dm3] 2R_15624848_SNP [dm6]	A	C	8.220e^-6	0.455	INTRON CG42524
3R	22071127	3R_22071127_SNP [dm3] 3R_26245405_SNP [dm6]	A	G	8.261e^-6	0.455	INTRON CR42745
2R	6266409	2R_6266409_SNP [dm3] 2R_10378904_SNP [dm6]	T	C	8.276e^-6	0.455	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732	TF binding site mE1_TFBS_sens
2L	9592110	2L_9592110_SNP [dm3] 2L_9592110_SNP [dm6]	T	C	8.654e^-6	0.455	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	21929381	3R_21929381_SNP [dm3] 3R_26103659_SNP [dm6]	A	C	9.612e^-6	0.455	INTERGENIC
2L	13073026	2L_13073026_DEL [dm3] 2L_13073026_DEL [dm6]	TTATTATGATGT...	T	1.001e^-5	0.455	INTERGENIC
3R	21926232	3R_21926232_SNP [dm3] 3R_26100510_SNP [dm6]	T	C	1.082e^-5	0.455	INTERGENIC	regulatory region REDfly_CRMs
3R	13478989	3R_13478989_SNP [dm3] 3R_17653267_SNP [dm6]	T	C	1.089e^-5	0.455	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13476708	3R_13476708_SNP [dm3] 3R_17650986_SNP [dm6]	G	A	1.098e^-5	0.455	INTRON CG14322
3L	10198592	3L_10198592_SNP [dm3] 3L_10205492_SNP [dm6]	C	T	1.215e^-5	0.455	UPSTREAM CR44538 INTERGENIC
3R	13477879	3R_13477879_SNP [dm3] 3R_17652157_SNP [dm6]	T	A	1.246e^-5	0.455	DOWNSTREAM CR45223 INTRON CG14322
3R	13477913	3R_13477913_SNP [dm3] 3R_17652191_SNP [dm6]	G	A	1.246e^-5	0.455	INTRON CG14322 EXON CR45223
3R	13478025	3R_13478025_SNP [dm3] 3R_17652303_SNP [dm6]	T	C	1.246e^-5	0.455	INTRON CG14322 EXON CR45223
3R	13478072	3R_13478072_SNP [dm3] 3R_17652350_SNP [dm6]	T	C	1.246e^-5	0.455	INTRON CG14322 EXON CR45223
3R	13478776	3R_13478776_SNP [dm3] 3R_17653054_SNP [dm6]	T	C	1.246e^-5	0.455	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	13478845	3R_13478845_SNP [dm3] 3R_17653123_SNP [dm6]	C	A	1.246e^-5	0.455	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	13478913	3R_13478913_SNP [dm3] 3R_17653191_SNP [dm6]	T	A	1.246e^-5	0.455	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13481117	3R_13481117_SNP [dm3] 3R_17655395_SNP [dm6]	G	A	1.246e^-5	0.455	INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13481221	3R_13481221_SNP [dm3] 3R_17655499_SNP [dm6]	A	G	1.246e^-5	0.455	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
3R	13488252	3R_13488252_SNP [dm3] 3R_17662530_SNP [dm6]	T	G	1.246e^-5	0.455	SYNONYMOUS_CODING CG14322
3R	13488387	3R_13488387_SNP [dm3] 3R_17662665_SNP [dm6]	C	G	1.246e^-5	0.455	SYNONYMOUS_CODING CG14322
3R	13489628	3R_13489628_SNP [dm3] 3R_17663906_SNP [dm6]	C	A	1.246e^-5	0.455	NON_SYNONYMOUS_CODING CG14322
2L	1922748	2L_1922748_INS [dm3] 2L_1922748_INS [dm6]	C	CCGCACCAC	1.253e^-5	0.455	INTRON CG7337
3R	13478748	3R_13478748_SNP [dm3] 3R_17653026_SNP [dm6]	C	T	1.273e^-5	0.455	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14193013	2R_14193013_SNP [dm3] 2R_18305508_SNP [dm6]	T	G	1.316e^-5	0.462	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	7005610	2L_7005610_SNP [dm3] 2L_7005610_SNP [dm6]	C	A	1.408e^-5	0.462	INTRON uif
3R	13487388	3R_13487388_SNP [dm3] 3R_17661666_SNP [dm6]	G	A	1.421e^-5	0.462	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
2L	20866621	2L_20866621_SNP [dm3] 2L_20866621_SNP [dm6]	G	A	1.422e^-5	0.462	INTRON CG9338
3L	18755854	3L_18755854_SNP [dm3] 3L_18762754_SNP [dm6]	T	C	1.442e^-5	0.462	INTRON ftz-f1
3R	13479029	3R_13479029_SNP [dm3] 3R_17653307_SNP [dm6]	G	C	1.502e^-5	0.462	INTRON CG14322 EXON CR45223	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7005429	2L_7005429_SNP [dm3] 2L_7005429_SNP [dm6]	A	T	1.516e^-5	0.462	INTRON uif
3R	22071126	3R_22071126_SNP [dm3] 3R_26245404_SNP [dm6]	G	T	1.557e^-5	0.462	INTRON CR42745
2L	20486011	2L_20486011_SNP [dm3] 2L_20486011_SNP [dm6]	G	T	1.559e^-5	0.462	UPSTREAM CR45361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2022099	2L_2022099_SNP [dm3] 2L_2022099_SNP [dm6]	T	G	1.565e^-5	0.462	INTRON CG4238
2R	11511131	2R_11511131_SNP [dm3] 2R_15623626_SNP [dm6]	C	A	1.570e^-5	0.462	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	11510937	2R_11510937_SNP [dm3] 2R_15623432_SNP [dm6]	A	C	1.607e^-5	0.462	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	13469550	3R_13469550_INS [dm3] 3R_17643828_INS [dm6]	A	AAAACCTACTGA...	1.614e^-5	0.462	UPSTREAM CG43175 INTRON CG43175
2R	13906501	2R_13906501_SNP [dm3] 2R_18018996_SNP [dm6]	A	C	1.688e^-5	0.476	INTRON CG5084
3R	26572922	3R_26572922_SNP [dm3] 3R_30747200_SNP [dm6]	C	G	1.771e^-5	0.485	UPSTREAM Npc2h & 1 other INTERGENIC
X	12582410	X_12582410_SNP [dm3] X_12688377_SNP [dm6]	A	T	1.774e^-5	0.485	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9734030	2R_9734030_SNP [dm3] 2R_13846525_SNP [dm6]	A	C	1.908e^-5	0.486	UTR_5_PRIME CG30484 UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9169358	2L_9169358_SNP [dm3] 2L_9169358_SNP [dm6]	C	T	1.942e^-5	0.486	INTRON tai
3L	5864630	3L_5864630_SNP [dm3] 3L_5871530_SNP [dm6]	C	G	1.976e^-5	0.486	UTR_5_PRIME CG5568
2L	5238251	2L_5238251_SNP [dm3] 2L_5238251_SNP [dm6]	C	T	1.983e^-5	0.486	UPSTREAM tkv INTRON tkv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	13469488	3R_13469488_SNP [dm3] 3R_17643766_SNP [dm6]	A	G	2.083e^-5	0.486	UPSTREAM CG43175 INTRON CG43175
3L	2603766	3L_2603766_SNP [dm3] 3L_2603766_SNP [dm6]	G	A	2.122e^-5	0.486	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3947252	2L_3947252_SNP [dm3] 2L_3947252_SNP [dm6]	G	T	2.144e^-5	0.486	INTRON fred
3R	25149967	3R_25149967_SNP [dm3] 3R_29324245_SNP [dm6]	C	A	2.166e^-5	0.486	INTERGENIC
2L	20503598	2L_20503598_SNP [dm3] 2L_20503598_SNP [dm6]	G	A	2.188e^-5	0.486	INTERGENIC
3L	12399798	3L_12399798_SNP [dm3] 3L_12406698_SNP [dm6]	G	A	2.193e^-5	0.486	INTRON CG32103
2L	20492294	2L_20492294_DEL [dm3] 2L_20492294_DEL [dm6]	CAACCGAGC	C	2.199e^-5	0.486	INTERGENIC
3R	21535960	3R_21535960_DEL [dm3] 3R_25710238_DEL [dm6]	AG	A	2.228e^-5	0.486	INTRON LpR2
3R	21535964	3R_21535964_SNP [dm3] 3R_25710242_SNP [dm6]	G	A	2.228e^-5	0.486	INTRON LpR2
3R	21535999	3R_21535999_SNP [dm3] 3R_25710277_SNP [dm6]	T	A	2.228e^-5	0.486	INTRON LpR2
3R	13490831	3R_13490831_SNP [dm3] 3R_17665109_SNP [dm6]	C	T	2.243e^-5	0.486	INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	22071100	3R_22071100_SNP [dm3] 3R_26245378_SNP [dm6]	T	A	2.276e^-5	0.486	INTRON CR42745
2L	3156268	2L_3156268_SNP [dm3] 2L_3156268_SNP [dm6]	C	T	2.293e^-5	0.486	INTRON Mad	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	13493055	3R_13493055_SNP [dm3] 3R_17667333_SNP [dm6]	C	A	2.342e^-5	0.486	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	9614934	3L_9614934_SNP [dm3] 3L_9621834_SNP [dm6]	C	T	2.343e^-5	0.486	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22741700	3R_22741700_INS [dm3] 3R_26915978_INS [dm6]	G	GG	2.520e^-5	0.486	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	12839360	2L_12839360_SNP [dm3] 2L_12839360_SNP [dm6]	A	C	2.542e^-5	0.486	INTERGENIC
3R	26572912	3R_26572912_INS [dm3] 3R_30747190_INS [dm6]	G	GGC	2.589e^-5	0.486	UPSTREAM Npc2h & 1 other INTERGENIC
2R	18696685	2R_18696685_SNP [dm3] 2R_22809180_SNP [dm6]	C	T	2.604e^-5	0.486	INTRON stl
2R	3508473	2R_3508473_SNP [dm3] 2R_7620968_SNP [dm6]	C	G	2.611e^-5	0.486	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13471161	3R_13471161_SNP [dm3] 3R_17645439_SNP [dm6]	A	T	2.619e^-5	0.486	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21920766	3R_21920766_SNP [dm3] 3R_26095044_SNP [dm6]	C	T	2.678e^-5	0.486	INTRON dys	regulatory region REDfly_CRMs
3L	9054881	3L_9054881_DEL [dm3] 3L_9061781_DEL [dm6]	TAACAAAGTGC...	T	2.714e^-5	0.486	INTRON Argk
3L	7741424	3L_7741424_SNP [dm3] 3L_7748324_SNP [dm6]	C	T	2.732e^-5	0.486	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21926282	3R_21926282_SNP [dm3] 3R_26100560_SNP [dm6]	T	A	2.753e^-5	0.486	INTERGENIC	regulatory region REDfly_CRMs
3R	21926287	3R_21926287_SNP [dm3] 3R_26100565_SNP [dm6]	T	C	2.753e^-5	0.486	INTERGENIC	regulatory region REDfly_CRMs
3L	10433701	3L_10433701_SNP [dm3] 3L_10440601_SNP [dm6]	A	C	2.800e^-5	0.486	INTERGENIC
2L	16135635	2L_16135635_SNP [dm3] 2L_16135635_SNP [dm6]	G	T	2.855e^-5	0.486	UPSTREAM CG34168 EXON CR44871
3R	9927651	3R_9927651_SNP [dm3] 3R_14101929_SNP [dm6]	C	T	2.874e^-5	0.486	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad
3L	9756489	3L_9756489_DEL [dm3] 3L_9763389_DEL [dm6]	CG	A	2.946e^-5	0.486	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20497659	2L_20497659_SNP [dm3] 2L_20497659_SNP [dm6]	G	T	2.973e^-5	0.486	INTERGENIC
3R	13478024	3R_13478024_SNP [dm3] 3R_17652302_SNP [dm6]	A	T	2.993e^-5	0.486	INTRON CG14322 EXON CR45223
2L	12839428	2L_12839428_SNP [dm3] 2L_12839428_SNP [dm6]	C	T	3.013e^-5	0.486	INTERGENIC
2L	20505746	2L_20505746_SNP [dm3] 2L_20505746_SNP [dm6]	C	A	3.017e^-5	0.486	INTERGENIC
3R	14361245	3R_14361245_SNP [dm3] 3R_18535523_SNP [dm6]	A	T	3.026e^-5	0.486	INTRON fru
2L	12839203	2L_12839203_SNP [dm3] 2L_12839203_SNP [dm6]	C	A	3.053e^-5	0.486	INTERGENIC
2L	18103647	2L_18103647_DEL [dm3] 2L_18103647_DEL [dm6]	ATGCCGCCCAA...	A	3.058e^-5	0.486	INTERGENIC
2L	18724389	2L_18724389_SNP [dm3] 2L_18724389_SNP [dm6]	T	A	3.110e^-5	0.486	INTRON CG10348	TF binding site mE1_TFBS_sens
2L	20526245	2L_20526245_DEL [dm3] 2L_20526245_DEL [dm6]	TAAACAACATGTATCTAAAA...	T	3.122e^-5	0.486	INTERGENIC
3R	13480706	3R_13480706_SNP [dm3] 3R_17654984_SNP [dm6]	T	C	3.133e^-5	0.486	INTRON CG14322
3R	26180434	3R_26180434_SNP [dm3] 3R_30354712_SNP [dm6]	G	A	3.144e^-5	0.486	INTRON hdc
3R	13482089	3R_13482089_SNP [dm3] 3R_17656367_SNP [dm6]	C	T	3.158e^-5	0.486	UPSTREAM tRNA:CR31577 INTRON CG14322
3R	22071120	3R_22071120_SNP [dm3] 3R_26245398_SNP [dm6]	T	A	3.183e^-5	0.486	INTRON CR42745
2R	13589045	2R_13589045_SNP [dm3] 2R_17701540_SNP [dm6]	C	T	3.196e^-5	0.486	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
3R	22071093	3R_22071093_SNP [dm3] 3R_26245371_SNP [dm6]	T	A	3.219e^-5	0.486	INTRON CR42745
2L	9592536	2L_9592536_SNP [dm3] 2L_9592536_SNP [dm6]	T	C	3.234e^-5	0.486	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11510932	2R_11510932_INS [dm3] 2R_15623427_INS [dm6]	C	CCTC	3.235e^-5	0.486	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	13478820	3R_13478820_SNP [dm3] 3R_17653098_SNP [dm6]	C	A	3.249e^-5	0.486	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8765521	3R_8765521_SNP [dm3] 3R_12939799_SNP [dm6]	A	T	3.351e^-5	0.486	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18692140	2R_18692140_SNP [dm3] 2R_22804635_SNP [dm6]	A	C	3.367e^-5	0.486	INTRON CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9592066	2L_9592066_SNP [dm3] 2L_9592066_SNP [dm6]	T	C	3.395e^-5	0.486	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	18696642	2R_18696642_SNP [dm3] 2R_22809137_SNP [dm6]	T	C	3.406e^-5	0.486	INTRON stl
3L	13033322	3L_13033322_SNP [dm3] 3L_13040222_SNP [dm6]	G	A	3.459e^-5	0.486	SYNONYMOUS_CODING SRm160	TF binding site mE1_TFBS_cad
2R	11511098	2R_11511098_SNP [dm3] 2R_15623593_SNP [dm6]	A	G	3.479e^-5	0.486	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2L	20493377	2L_20493377_SNP [dm3] 2L_20493377_SNP [dm6]	C	G	3.510e^-5	0.486	INTERGENIC
3L	9610830	3L_9610830_SNP [dm3] 3L_9617730_SNP [dm6]	T	A	3.516e^-5	0.486	INTRON LanB2
X	13421393	X_13421393_SNP [dm3] X_13527360_SNP [dm6]	C	A	3.520e^-5	0.486	UPSTREAM CG15754 DOWNSTREAM Neto INTERGENIC
3R	22071037	3R_22071037_SNP [dm3] 3R_26245315_SNP [dm6]	T	C	3.551e^-5	0.486	INTRON CR42745
3L	2425593	3L_2425593_SNP [dm3] 3L_2425593_SNP [dm6]	G	A	3.558e^-5	0.486	INTRON CG45186	TF binding site mE1_TFBS_bab1
3L	2425630	3L_2425630_SNP [dm3] 3L_2425630_SNP [dm6]	T	A	3.599e^-5	0.486	INTRON CG45186	TF binding site mE1_TFBS_bab1
3L	9610953	3L_9610953_SNP [dm3] 3L_9617853_SNP [dm6]	T	C	3.614e^-5	0.486	SYNONYMOUS_CODING LanB2
2L	6501621	2L_6501621_SNP [dm3] 2L_6501621_SNP [dm6]	T	C	3.636e^-5	0.486	INTRON CG31637	TF binding site mE1_TFBS_sens
2L	1913022	2L_1913022_SNP [dm3] 2L_1913022_SNP [dm6]	A	T	3.639e^-5	0.486	INTRON CG7337
2R	13589040	2R_13589040_SNP [dm3] 2R_17701535_SNP [dm6]	C	T	3.663e^-5	0.486	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2L	10180808	2L_10180808_SNP [dm3] 2L_10180808_SNP [dm6]	G	A	3.678e^-5	0.486	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7005276	2L_7005276_DEL [dm3] 2L_7005276_DEL [dm6]	CCTGCAAGGAATGATGGCAC...	GTAAATA	3.692e^-5	0.486	INTRON uif
3R	25267551	3R_25267551_SNP [dm3] 3R_29441829_SNP [dm6]	T	C	3.714e^-5	0.486	INTRON Ptp99A
3L	9610454	3L_9610454_SNP [dm3] 3L_9617354_SNP [dm6]	C	G	3.733e^-5	0.486	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_inv
2L	1923142	2L_1923142_SNP [dm3] 2L_1923142_SNP [dm6]	T	A	3.754e^-5	0.486	INTRON CG7337
3L	12007085	3L_12007085_SNP [dm3] 3L_12013985_SNP [dm6]	C	T	3.794e^-5	0.486	INTRON rols
2L	19129843	2L_19129843_SNP [dm3] 2L_19129843_SNP [dm6]	A	G	3.826e^-5	0.486	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
2L	6012650	2L_6012650_SNP [dm3] 2L_6012650_SNP [dm6]	G	A	3.832e^-5	0.486	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
3L	2851412	3L_2851412_SNP [dm3] 3L_2851412_SNP [dm6]	T	G	3.832e^-5	0.486	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8764575	3R_8764575_SNP [dm3] 3R_12938853_SNP [dm6]	C	T	3.840e^-5	0.486	INTERGENIC
X	2598847	X_2598847_SNP [dm3] X_2704814_SNP [dm6]	T	C	3.855e^-5	0.486	UPSTREAM Csat INTRON eIF2B-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19179686	3R_19179686_SNP [dm3] 3R_23353964_SNP [dm6]	C	G	3.882e^-5	0.486	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	743385	2L_743385_SNP [dm3] 2L_743385_SNP [dm6]	A	G	3.911e^-5	0.486	UTR_5_PRIME Eaat2
2L	6190800	2L_6190800_SNP [dm3] 2L_6190800_SNP [dm6]	C	T	3.918e^-5	0.486	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	12839376	2L_12839376_SNP [dm3] 2L_12839376_SNP [dm6]	A	T	3.998e^-5	0.486	INTERGENIC
2L	10730805	2L_10730805_SNP [dm3] 2L_10730805_SNP [dm6]	G	C	4.030e^-5	0.486	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26018359	3R_26018359_SNP [dm3] 3R_30192637_SNP [dm6]	G	T	4.063e^-5	0.486	INTERGENIC
2R	14396424	2R_14396424_SNP [dm3] 2R_18508919_SNP [dm6]	C	T	4.065e^-5	0.486	INTERGENIC
3R	9642762	3R_9642762_SNP [dm3] 3R_13817040_SNP [dm6]	G	A	4.070e^-5	0.486	EXON CR43642
3L	9756596	3L_9756596_SNP [dm3] 3L_9763496_SNP [dm6]	C	T	4.126e^-5	0.486	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5923854	3L_5923854_SNP [dm3] 3L_5930754_SNP [dm6]	A	G	4.143e^-5	0.486	NON_SYNONYMOUS_CODING Rcc1 DOWNSTREAM Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20496750	2L_20496750_SNP [dm3] 2L_20496750_SNP [dm6]	A	G	4.152e^-5	0.486	DOWNSTREAM CG34007 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20528049	2L_20528049_SNP [dm3] 2L_20528049_SNP [dm6]	G	A	4.177e^-5	0.486	INTERGENIC
3L	10037561	3L_10037561_SNP [dm3] 3L_10044461_SNP [dm6]	A	G	4.183e^-5	0.486	INTRON dpr6
2R	9431189	2R_9431189_SNP [dm3] 2R_13543684_SNP [dm6]	T	A	4.274e^-5	0.494	INTRON CG6145
2R	11511812	2R_11511812_MNP [dm3] 2R_15624307_MNP [dm6]	ATCTTTTC	GAAAAGAT	4.335e^-5	0.498	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	9348002	2R_9348002_SNP [dm3] 2R_13460497_SNP [dm6]	G	C	4.367e^-5	0.498	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21989913	3R_21989913_SNP [dm3] 3R_26164191_SNP [dm6]	T	C	4.406e^-5	0.5	INTERGENIC
3L	5862771	3L_5862771_SNP [dm3] 3L_5869671_SNP [dm6]	A	G	4.460e^-5	0.5	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20488304	2L_20488304_SNP [dm3] 2L_20488304_SNP [dm6]	G	A	4.477e^-5	0.5	DOWNSTREAM mir-1 & 1 other EXON CR45360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11208331	2L_11208331_SNP [dm3] 2L_11208331_SNP [dm6]	T	C	4.492e^-5	0.5	INTERGENIC
3R	26577154	3R_26577154_SNP [dm3] 3R_30751432_SNP [dm6]	C	T	4.511e^-5	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16384097	2L_16384097_SNP [dm3] 2L_16384097_SNP [dm6]	G	C	4.579e^-5	0.504	INTERGENIC
3R	26981964	3R_26981964_SNP [dm3] 3R_31156242_SNP [dm6]	A	T	4.677e^-5	0.505	INTRON Gycbeta100B
3R	22071155	3R_22071155_SNP [dm3] 3R_26245433_SNP [dm6]	T	G	4.678e^-5	0.505	INTRON CR42745
2L	20496674	2L_20496674_SNP [dm3] 2L_20496674_SNP [dm6]	T	C	4.680e^-5	0.505	DOWNSTREAM CG34007 INTERGENIC	TF binding site mE1_TFBS_cad
2L	1922975	2L_1922975_SNP [dm3] 2L_1922975_SNP [dm6]	G	T	4.697e^-5	0.505	INTRON CG7337
3R	11847305	3R_11847305_SNP [dm3] 3R_16021583_SNP [dm6]	C	T	4.752e^-5	0.505	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	5936717	2L_5936717_SNP [dm3] 2L_5936717_SNP [dm6]	C	T	4.834e^-5	0.505	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15634946	X_15634946_SNP [dm3] X_15740913_SNP [dm6]	C	G	4.849e^-5	0.505	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5251052	X_5251052_SNP [dm3] X_5357019_SNP [dm6]	C	T	4.853e^-5	0.505	INTRON SK
3L	2021382	3L_2021382_SNP [dm3] 3L_2021382_SNP [dm6]	A	T	4.865e^-5	0.505	NON_SYNONYMOUS_CODING CG42357 DOWNSTREAM CG42356
2L	3549911	2L_3549911_SNP [dm3] 2L_3549911_SNP [dm6]	C	T	4.869e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17525170	3L_17525170_SNP [dm3] 3L_17532070_SNP [dm6]	A	G	4.902e^-5	0.505	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl
2L	20488735	2L_20488735_DEL [dm3] 2L_20488735_DEL [dm6]	CCATTCACCCCAGCTAGGCT...	A	4.931e^-5	0.505	UPSTREAM CR45359 EXON CR45360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20485603	2L_20485603_SNP [dm3] 2L_20485603_SNP [dm6]	A	T	4.959e^-5	0.505	UPSTREAM CR44980 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	132376	2L_132376_DEL [dm3] 2L_132376_DEL [dm6]	CA	C	4.998e^-5	0.505	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22071974	3R_22071974_SNP [dm3] 3R_26246252_SNP [dm6]	G	T	5.055e^-5	0.505	INTRON CR42745
3R	26981970	3R_26981970_SNP [dm3] 3R_31156248_SNP [dm6]	T	G	5.093e^-5	0.505	INTRON Gycbeta100B
2L	20488839	2L_20488839_SNP [dm3] 2L_20488839_SNP [dm6]	A	T	5.114e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20488844	2L_20488844_SNP [dm3] 2L_20488844_SNP [dm6]	T	A	5.114e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20488846	2L_20488846_DEL [dm3] 2L_20488846_DEL [dm6]	AGTGGGCAGCAT...	A	5.114e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13493479	3R_13493479_SNP [dm3] 3R_17667757_SNP [dm6]	A	G	5.127e^-5	0.505	UPSTREAM tRNA:CR31576 INTRON CG14322 EXON CR45045	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	3449530	2L_3449530_SNP [dm3] 2L_3449530_SNP [dm6]	T	A	5.183e^-5	0.505	UPSTREAM Snx1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	1922883	2L_1922883_SNP [dm3] 2L_1922883_SNP [dm6]	A	G	5.367e^-5	0.505	INTRON CG7337
2R	10013685	2R_10013685_SNP [dm3] 2R_14126180_SNP [dm6]	C	T	5.422e^-5	0.505	INTRON Prosap
2L	20488760	2L_20488760_DEL [dm3] 2L_20488760_DEL [dm6]	CCATAGCGATCGCATTTTGA...	C	5.423e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC EXON CR45360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20488807	2L_20488807_DEL [dm3] 2L_20488807_DEL [dm6]	AC	A	5.423e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20488812	2L_20488812_SNP [dm3] 2L_20488812_SNP [dm6]	A	C	5.423e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20488814	2L_20488814_DEL [dm3] 2L_20488814_DEL [dm6]	TAAAAAGGATATCCCAAACA...	T	5.423e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8379087	2R_8379087_SNP [dm3] 2R_12491582_SNP [dm6]	G	T	5.448e^-5	0.505	UPSTREAM fdl INTRON fdl
3R	7115539	3R_7115539_SNP [dm3] 3R_11289817_SNP [dm6]	A	G	5.499e^-5	0.505	INTRON CR31386
2L	20488841	2L_20488841_SNP [dm3] 2L_20488841_SNP [dm6]	C	G	5.512e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7572154	3L_7572154_SNP [dm3] 3L_7579054_SNP [dm6]	A	T	5.525e^-5	0.505	INTERGENIC
3L	7436662	3L_7436662_SNP [dm3] 3L_7443562_SNP [dm6]	T	A	5.671e^-5	0.505	INTRON CG42458
X	15278629	X_15278629_SNP [dm3] X_15384596_SNP [dm6]	C	G	5.696e^-5	0.505	UTR_5_PRIME CG9164 UPSTREAM CG9164 INTRON CG9164
3L	7572179	3L_7572179_SNP [dm3] 3L_7579079_SNP [dm6]	C	A	5.717e^-5	0.505	INTERGENIC
3L	7572180	3L_7572180_SNP [dm3] 3L_7579080_SNP [dm6]	G	A	5.717e^-5	0.505	INTERGENIC
3R	21841680	3R_21841680_SNP [dm3] 3R_26015958_SNP [dm6]	G	A	5.723e^-5	0.505	UTR_3_PRIME Kaz-m1 DOWNSTREAM Kaz-m1 & 1 other EXON CR45040	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	5403360	2L_5403360_SNP [dm3] 2L_5403360_SNP [dm6]	C	G	5.755e^-5	0.505	UPSTREAM H15 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	19180953	3R_19180953_SNP [dm3] 3R_23355231_SNP [dm6]	A	C	5.759e^-5	0.505	UTR_3_PRIME ATPsyn-Cf6 DOWNSTREAM ATPsyn-Cf6 & 1 other	TF binding site mE1_TFBS_HSA
2R	8613762	2R_8613762_SNP [dm3] 2R_12726257_SNP [dm6]	A	T	5.783e^-5	0.505	INTRON CG42663
X	4560503	X_4560503_SNP [dm3] X_4666470_SNP [dm6]	T	G	5.829e^-5	0.505	UTR_5_PRIME CG3009 DOWNSTREAM rap
3L	9616072	3L_9616072_SNP [dm3] 3L_9622972_SNP [dm6]	C	T	5.886e^-5	0.505	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10730802	2L_10730802_SNP [dm3] 2L_10730802_SNP [dm6]	G	A	5.907e^-5	0.505	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3445344	3R_3445344_SNP [dm3] 3R_7619622_SNP [dm6]	C	T	5.915e^-5	0.505	INTRON CG34127
2L	4151475	2L_4151475_SNP [dm3] 2L_4151475_SNP [dm6]	G	A	5.933e^-5	0.505	DOWNSTREAM CG2955 INTERGENIC
2L	20488837	2L_20488837_SNP [dm3] 2L_20488837_SNP [dm6]	G	T	6.047e^-5	0.505	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2742385	3R_2742385_SNP [dm3] 3R_6916663_SNP [dm6]	A	T	6.053e^-5	0.505	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4269841	2L_4269841_SNP [dm3] 2L_4269841_SNP [dm6]	G	A	6.059e^-5	0.505	INTERGENIC
3L	998591	3L_998591_SNP [dm3] 3L_998591_SNP [dm6]	G	C	6.088e^-5	0.505	SYNONYMOUS_CODING trio
2R	18696108	2R_18696108_SNP [dm3] 2R_22808603_SNP [dm6]	A	G	6.103e^-5	0.505	UTR_5_PRIME stl
2R	18696178	2R_18696178_SNP [dm3] 2R_22808673_SNP [dm6]	A	G	6.103e^-5	0.505	UTR_5_PRIME stl
2R	18696209	2R_18696209_SNP [dm3] 2R_22808704_SNP [dm6]	G	A	6.103e^-5	0.505	UTR_5_PRIME stl
3R	22466134	3R_22466134_SNP [dm3] 3R_26640412_SNP [dm6]	A	G	6.135e^-5	0.505	SYNONYMOUS_CODING TwdlD
2L	9425614	2L_9425614_SNP [dm3] 2L_9425614_SNP [dm6]	T	C	6.158e^-5	0.505	SYNONYMOUS_CODING Mco1
2L	3246844	2L_3246844_SNP [dm3] 2L_3246844_SNP [dm6]	G	A	6.257e^-5	0.505	INTERGENIC
3L	7572170	3L_7572170_SNP [dm3] 3L_7579070_SNP [dm6]	T	C	6.272e^-5	0.505	INTERGENIC
2R	4703065	2R_4703065_INS [dm3] 2R_8815560_INS [dm6]	A	ATTTGGGTGTA...	6.290e^-5	0.505	INTRON sns
3R	22071544	3R_22071544_SNP [dm3] 3R_26245822_SNP [dm6]	C	T	6.318e^-5	0.505	INTRON CR42745
3R	3332898	3R_3332898_SNP [dm3] 3R_7507176_SNP [dm6]	A	T	6.323e^-5	0.505	INTERGENIC
3R	21717893	3R_21717893_SNP [dm3] 3R_25892171_SNP [dm6]	G	A	6.324e^-5	0.505	INTRON Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26976942	3R_26976942_SNP [dm3] 3R_31151220_SNP [dm6]	A	G	6.339e^-5	0.505	INTRON Gycbeta100B
2R	8557972	2R_8557972_SNP [dm3] 2R_12670467_SNP [dm6]	G	C	6.386e^-5	0.505	UPSTREAM nemy DOWNSTREAM CG42708 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	2652542	3R_2652542_SNP [dm3] 3R_6826820_SNP [dm6]	C	T	6.438e^-5	0.505	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26576845	3R_26576845_SNP [dm3] 3R_30751123_SNP [dm6]	G	A	6.453e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14192809	2R_14192809_SNP [dm3] 2R_18305304_SNP [dm6]	C	T	6.494e^-5	0.505	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	3419448	2R_3419448_SNP [dm3] 2R_7531943_SNP [dm6]	T	G	6.500e^-5	0.505	INTRON Drat	TF binding site BDTNP1_TFBS_dl
2R	19361080	2R_19361080_SNP [dm3] 2R_23473557_SNP [dm6]	T	C	6.514e^-5	0.505	NON_SYNONYMOUS_CODING Or59c INTRON CG43795
3R	26559845	3R_26559845_SNP [dm3] 3R_30734123_SNP [dm6]	T	C	6.557e^-5	0.505	INTERGENIC
2L	12839308	2L_12839308_SNP [dm3] 2L_12839308_SNP [dm6]	A	C	6.657e^-5	0.505	INTERGENIC
3R	22071580	3R_22071580_SNP [dm3] 3R_26245858_SNP [dm6]	T	C	6.684e^-5	0.505	INTRON CR42745
3L	12399640	3L_12399640_SNP [dm3] 3L_12406540_SNP [dm6]	T	C	6.731e^-5	0.505	INTRON CG32103
2L	20476692	2L_20476692_SNP [dm3] 2L_20476692_SNP [dm6]	T	G	6.904e^-5	0.505	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19419457	3R_19419457_SNP [dm3] 3R_23593735_SNP [dm6]	G	T	6.930e^-5	0.505	NON_SYNONYMOUS_CODING CG16723 UPSTREAM CG33337
3L	9610623	3L_9610623_SNP [dm3] 3L_9617523_SNP [dm6]	C	G	7.026e^-5	0.505	INTRON LanB2	TF binding site mE1_TFBS_inv
3R	13490496	3R_13490496_SNP [dm3] 3R_17664774_SNP [dm6]	T	G	7.027e^-5	0.505	NON_SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_inv
3R	13492920	3R_13492920_SNP [dm3] 3R_17667198_SNP [dm6]	C	T	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13492954	3R_13492954_SNP [dm3] 3R_17667232_SNP [dm6]	C	A	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13493032	3R_13493032_SNP [dm3] 3R_17667310_SNP [dm6]	C	T	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13493075	3R_13493075_INS [dm3] 3R_17667353_INS [dm6]	T	TGTATTCTT	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493080	3R_13493080_MNP [dm3] 3R_17667358_MNP [dm6]	GAA	TTC	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493084	3R_13493084_SNP [dm3] 3R_17667362_SNP [dm6]	A	C	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493086	3R_13493086_SNP [dm3] 3R_17667364_SNP [dm6]	A	T	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493087	3R_13493087_SNP [dm3] 3R_17667365_SNP [dm6]	T	A	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493127	3R_13493127_SNP [dm3] 3R_17667405_SNP [dm6]	T	C	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	13493182	3R_13493182_SNP [dm3] 3R_17667460_SNP [dm6]	G	C	7.027e^-5	0.505	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	13495658	3R_13495658_SNP [dm3] 3R_17669936_SNP [dm6]	T	A	7.027e^-5	0.505	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13495769	3R_13495769_SNP [dm3] 3R_17670047_SNP [dm6]	T	C	7.027e^-5	0.505	DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19798266	X_19798266_SNP [dm3] X_19904233_SNP [dm6]	G	A	7.068e^-5	0.505	INTRON Hers	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19798268	X_19798268_SNP [dm3] X_19904235_SNP [dm6]	C	T	7.068e^-5	0.505	INTRON Hers	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19798295	X_19798295_SNP [dm3] X_19904262_SNP [dm6]	T	C	7.068e^-5	0.505	INTRON Hers	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9611559	3L_9611559_SNP [dm3] 3L_9618459_SNP [dm6]	C	T	7.095e^-5	0.505	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3L	5864597	3L_5864597_SNP [dm3] 3L_5871497_SNP [dm6]	C	T	7.117e^-5	0.505	UPSTREAM CG5568 INTERGENIC
X	9184669	X_9184669_SNP [dm3] X_9290636_SNP [dm6]	C	T	7.194e^-5	0.505	INTRON lz	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	9724286	2L_9724286_SNP [dm3] 2L_9724286_SNP [dm6]	G	C	7.220e^-5	0.505	INTRON Nckx30C
2R	4115219	2R_4115219_SNP [dm3] 2R_8227714_SNP [dm6]	A	T	7.241e^-5	0.505	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9731153	2L_9731153_SNP [dm3] 2L_9731153_SNP [dm6]	T	G	7.249e^-5	0.505	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3246852	2L_3246852_SNP [dm3] 2L_3246852_SNP [dm6]	T	A	7.261e^-5	0.505	INTERGENIC
3R	6180619	3R_6180619_SNP [dm3] 3R_10354897_SNP [dm6]	T	A	7.262e^-5	0.505	INTRON jumu	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11510948	2R_11510948_SNP [dm3] 2R_15623443_SNP [dm6]	A	T	7.269e^-5	0.505	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	13589061	2R_13589061_SNP [dm3] 2R_17701556_SNP [dm6]	T	C	7.292e^-5	0.505	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
X	21981976	X_21981976_SNP [dm3] X_22580140_SNP [dm6]	G	T	7.395e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21982025	X_21982025_SNP [dm3] X_22580189_SNP [dm6]	G	A	7.395e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8823973	X_8823973_SNP [dm3] X_8929940_SNP [dm6]	A	T	7.401e^-5	0.505	INTRON rdgA
2L	1022432	2L_1022432_SNP [dm3] 2L_1022432_SNP [dm6]	A	G	7.576e^-5	0.505	INTRON IA-2
2L	1022454	2L_1022454_SNP [dm3] 2L_1022454_SNP [dm6]	A	T	7.576e^-5	0.505	INTRON IA-2
2L	1022539	2L_1022539_SNP [dm3] 2L_1022539_SNP [dm6]	C	T	7.576e^-5	0.505	INTRON IA-2
3L	7796280	3L_7796280_SNP [dm3] 3L_7803180_SNP [dm6]	C	A	7.578e^-5	0.505	INTRON CG32369	TF binding site mE1_TFBS_cad
2R	6266534	2R_6266534_SNP [dm3] 2R_10379029_SNP [dm6]	C	G	7.583e^-5	0.505	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732
2L	6227177	2L_6227177_SNP [dm3] 2L_6227177_SNP [dm6]	C	G	7.609e^-5	0.505	DOWNSTREAM Ugt37b1 INTERGENIC
2L	20493047	2L_20493047_SNP [dm3] 2L_20493047_SNP [dm6]	C	T	7.625e^-5	0.505	INTERGENIC
2R	14193012	2R_14193012_SNP [dm3] 2R_18305507_SNP [dm6]	C	T	7.664e^-5	0.505	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	25263685	3R_25263685_SNP [dm3] 3R_29437963_SNP [dm6]	A	C	7.784e^-5	0.505	INTRON Ptp99A
3R	25263888	3R_25263888_SNP [dm3] 3R_29438166_SNP [dm6]	A	G	7.784e^-5	0.505	INTRON Ptp99A
3R	21989909	3R_21989909_SNP [dm3] 3R_26164187_SNP [dm6]	A	T	7.801e^-5	0.505	INTERGENIC
2L	4008955	2L_4008955_SNP [dm3] 2L_4008955_SNP [dm6]	T	A	7.825e^-5	0.505	NON_SYNONYMOUS_CODING CG43774 DOWNSTREAM CG43773
3R	26580430	3R_26580430_SNP [dm3] 3R_30754708_SNP [dm6]	T	G	7.826e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9616563	3L_9616563_SNP [dm3] 3L_9623463_SNP [dm6]	C	A	7.844e^-5	0.505	UTR_3_PRIME LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8047984	2L_8047984_SNP [dm3] 2L_8047984_SNP [dm6]	G	A	7.846e^-5	0.505	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
X	4560573	X_4560573_SNP [dm3] X_4666540_SNP [dm6]	G	A	7.897e^-5	0.505	UTR_5_PRIME CG3009 DOWNSTREAM rap
2L	111618	2L_111618_DEL [dm3] 2L_111618_DEL [dm6]	AGACTTTGGTA...	A	7.899e^-5	0.505	DOWNSTREAM Sam-S INTRON Sam-S
2R	3508454	2R_3508454_SNP [dm3] 2R_7620949_SNP [dm6]	C	T	7.920e^-5	0.505	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26023570	3R_26023570_SNP [dm3] 3R_30197848_SNP [dm6]	C	A	7.920e^-5	0.505	INTRON CG9743
3L	9613851	3L_9613851_SNP [dm3] 3L_9620751_SNP [dm6]	T	C	7.931e^-5	0.505	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10495536	3R_10495536_SNP [dm3] 3R_14669814_SNP [dm6]	A	T	7.971e^-5	0.505	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3536286	X_3536286_SNP [dm3] X_3642253_SNP [dm6]	T	A	7.973e^-5	0.505	INTRON AstA-R1
2L	7088834	2L_7088834_SNP [dm3] 2L_7088834_SNP [dm6]	G	A	8.040e^-5	0.505	INTERGENIC
3R	26580432	3R_26580432_SNP [dm3] 3R_30754710_SNP [dm6]	T	C	8.055e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	26580440	3R_26580440_INS [dm3] 3R_30754718_INS [dm6]	C	ATAG	8.055e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22071157	3R_22071157_SNP [dm3] 3R_26245435_SNP [dm6]	T	C	8.062e^-5	0.505	INTRON CR42745
3R	21505042	3R_21505042_SNP [dm3] 3R_25679320_SNP [dm6]	C	T	8.118e^-5	0.507	UTR_3_PRIME CG5039 & 1 other UPSTREAM CG4730	TF binding site mE1_TFBS_sens
3L	9621505	3L_9621505_SNP [dm3] 3L_9628405_SNP [dm6]	A	G	8.141e^-5	0.507	UPSTREAM CG8336 INTRON Or67b
2R	17678315	2R_17678315_SNP [dm3] 2R_21790810_SNP [dm6]	T	A	8.225e^-5	0.509	SYNONYMOUS_CODING lox2
3R	26580429	3R_26580429_SNP [dm3] 3R_30754707_SNP [dm6]	T	G	8.249e^-5	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13906266	2R_13906266_DEL [dm3] 2R_18018761_DEL [dm6]	ATAGCGTATA	A	8.291e^-5	0.509	INTRON CG5084
3R	13471140	3R_13471140_SNP [dm3] 3R_17645418_SNP [dm6]	C	G	8.295e^-5	0.509	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site mE1_TFBS_cad
2L	20493105	2L_20493105_SNP [dm3] 2L_20493105_SNP [dm6]	G	A	8.471e^-5	0.512	INTERGENIC
3L	998804	3L_998804_DEL [dm3] 3L_998804_DEL [dm6]	ATTAGACAATTTTGA...	A	8.474e^-5	0.512	SPLICE_SITE_REGION trio INTRON trio
2R	13918740	2R_13918740_SNP [dm3] 2R_18031235_SNP [dm6]	A	C	8.507e^-5	0.512	INTERGENIC
2R	13918741	2R_13918741_SNP [dm3] 2R_18031236_SNP [dm6]	A	G	8.507e^-5	0.512	INTERGENIC
3L	9782599	3L_9782599_SNP [dm3] 3L_9789499_SNP [dm6]	C	T	8.581e^-5	0.512	INTRON Zasp67
2R	13589054	2R_13589054_SNP [dm3] 2R_17701549_SNP [dm6]	A	G	8.615e^-5	0.512	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2L	16822916	2L_16822916_SNP [dm3] 2L_16822916_SNP [dm6]	T	A	8.648e^-5	0.512	SYNONYMOUS_CODING Cas INTRON mdy
3R	26972822	3R_26972822_SNP [dm3] 3R_31147100_SNP [dm6]	T	C	8.662e^-5	0.512	INTRON Gycbeta100B
3L	9621499	3L_9621499_DEL [dm3] 3L_9628399_DEL [dm6]	AA	A	8.676e^-5	0.512	UPSTREAM CG8336 INTRON Or67b
3R	19190137	3R_19190137_SNP [dm3] 3R_23364415_SNP [dm6]	A	G	8.695e^-5	0.512	UPSTREAM CG4408 INTERGENIC
2R	13906509	2R_13906509_INS [dm3] 2R_18019004_INS [dm6]	A	AGCTATGCCAGAA...	8.726e^-5	0.512	INTRON CG5084
3R	160018	3R_160018_SNP [dm3] 3R_4334296_SNP [dm6]	T	A	8.757e^-5	0.512	UPSTREAM CG9776 & 1 other DOWNSTREAM Skp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	21460409	3R_21460409_SNP [dm3] 3R_25634687_SNP [dm6]	G	A	8.776e^-5	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9609172	3L_9609172_SNP [dm3] 3L_9616072_SNP [dm6]	G	A	8.829e^-5	0.512	UTR_5_PRIME LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7004746	2L_7004746_SNP [dm3] 2L_7004746_SNP [dm6]	G	C	8.895e^-5	0.512	INTRON uif
3R	21560804	3R_21560804_SNP [dm3] 3R_25735082_SNP [dm6]	T	A	8.919e^-5	0.512	INTRON LpR2
3L	7572110	3L_7572110_SNP [dm3] 3L_7579010_SNP [dm6]	T	A	8.935e^-5	0.512	INTERGENIC
2L	2610762	2L_2610762_SNP [dm3] 2L_2610762_SNP [dm6]	T	C	8.965e^-5	0.512	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	22071644	3R_22071644_SNP [dm3] 3R_26245922_SNP [dm6]	C	T	8.978e^-5	0.512	INTRON CR42745
3R	26576760	3R_26576760_SNP [dm3] 3R_30751038_SNP [dm6]	T	C	9.014e^-5	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20425628	X_20425628_SNP [dm3] X_20554601_SNP [dm6]	T	C	9.052e^-5	0.512	INTRON RunxB
2R	17865402	2R_17865402_SNP [dm3] 2R_21977897_SNP [dm6]	C	T	9.094e^-5	0.512	SYNONYMOUS_CODING Gr58c DOWNSTREAM Gr58b
2R	16059911	2R_16059911_SNP [dm3] 2R_20172406_SNP [dm6]	A	T	9.111e^-5	0.512	INTERGENIC
2L	1831551	2L_1831551_SNP [dm3] 2L_1831551_SNP [dm6]	G	C	9.156e^-5	0.512	DOWNSTREAM c-cup & 1 other INTERGENIC
2R	15135843	2R_15135843_SNP [dm3] 2R_19248338_SNP [dm6]	G	C	9.382e^-5	0.512	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2413202	3L_2413202_INS [dm3] 3L_2413202_INS [dm6]	A	AA	9.418e^-5	0.512	UPSTREAM CG45186 INTRON CG45186
3L	10029065	3L_10029065_SNP [dm3] 3L_10035965_SNP [dm6]	C	T	9.502e^-5	0.512	INTRON dpr6
3L	9621512	3L_9621512_SNP [dm3] 3L_9628412_SNP [dm6]	T	C	9.503e^-5	0.512	UPSTREAM CG8336 INTRON Or67b
3L	9621516	3L_9621516_SNP [dm3] 3L_9628416_SNP [dm6]	G	C	9.503e^-5	0.512	UPSTREAM CG8336 INTRON Or67b
3L	9621527	3L_9621527_INS [dm3] 3L_9628427_INS [dm6]	CT	TAAAGCAG	9.503e^-5	0.512	UPSTREAM CG8336 INTRON Or67b
3L	9621557	3L_9621557_SNP [dm3] 3L_9628457_SNP [dm6]	G	T	9.503e^-5	0.512	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
2R	18696700	2R_18696700_SNP [dm3] 2R_22809195_SNP [dm6]	G	A	9.554e^-5	0.512	INTRON stl
3L	17406122	3L_17406122_SNP [dm3] 3L_17413022_SNP [dm6]	C	G	9.593e^-5	0.512	INTRON blot	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7224755	3L_7224755_SNP [dm3] 3L_7231655_SNP [dm6]	G	A	9.609e^-5	0.512	INTERGENIC
3R	13472316	3R_13472316_DEL [dm3] 3R_17646594_DEL [dm6]	ATA	A	9.622e^-5	0.512	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	23140743	3R_23140743_SNP [dm3] 3R_27315021_SNP [dm6]	A	G	9.625e^-5	0.512	INTRON CG3339
3L	1084609	3L_1084609_SNP [dm3] 3L_1084609_SNP [dm6]	A	G	9.626e^-5	0.512	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5864747	3L_5864747_SNP [dm3] 3L_5871647_SNP [dm6]	T	A	9.634e^-5	0.512	NON_SYNONYMOUS_CODING CG5568
2R	17677990	2R_17677990_SNP [dm3] 2R_21790485_SNP [dm6]	T	A	9.652e^-5	0.512	NON_SYNONYMOUS_CODING lox2
3R	26980194	3R_26980194_SNP [dm3] 3R_31154472_SNP [dm6]	C	A	9.832e^-5	0.512	INTRON Gycbeta100B
3R	26980221	3R_26980221_SNP [dm3] 3R_31154499_SNP [dm6]	G	A	9.832e^-5	0.512	INTRON Gycbeta100B
3R	26980236	3R_26980236_SNP [dm3] 3R_31154514_SNP [dm6]	G	T	9.832e^-5	0.512	INTRON Gycbeta100B
2L	20862577	2L_20862577_SNP [dm3] 2L_20862577_SNP [dm6]	A	G	9.855e^-5	0.512	EXON CR9337
3R	19190139	3R_19190139_SNP [dm3] 3R_23364417_SNP [dm6]	A	G	9.943e^-5	0.512	UPSTREAM CG4408 INTERGENIC
3L	9613845	3L_9613845_SNP [dm3] 3L_9620745_SNP [dm6]	T	A	9.962e^-5	0.512	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10433878	3L_10433878_SNP [dm3] 3L_10440778_SNP [dm6]	A	G	9.988e^-5	0.512	INTERGENIC
2L	19071925	2L_19071925_SNP [dm3] 2L_19071925_SNP [dm6]	T	C	1.000e^-4	0.512	INTRON CG17572
2L	15044887	2L_15044887_INS [dm3] 2L_15044887_INS [dm6]	T	TAT	1.002e^-4	0.512	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs
3L	2413221	3L_2413221_DEL [dm3] 3L_2413221_DEL [dm6]	CAT	C	1.010e^-4	0.512	UPSTREAM CG45186 INTRON CG45186
3L	7741430	3L_7741430_SNP [dm3] 3L_7748330_SNP [dm6]	A	C	1.022e^-4	0.512	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13479696	3R_13479696_SNP [dm3] 3R_17653974_SNP [dm6]	A	G	1.024e^-4	0.512	UPSTREAM CR45223 INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20520362	2L_20520362_SNP [dm3] 2L_20520362_SNP [dm6]	C	T	1.025e^-4	0.512	INTERGENIC
3R	23246909	3R_23246909_SNP [dm3] 3R_27421187_SNP [dm6]	G	C	1.027e^-4	0.512	INTRON side
2L	5238250	2L_5238250_SNP [dm3] 2L_5238250_SNP [dm6]	C	T	1.027e^-4	0.512	UPSTREAM tkv INTRON tkv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	6501623	2L_6501623_SNP [dm3] 2L_6501623_SNP [dm6]	G	A	1.027e^-4	0.512	INTRON CG31637	TF binding site mE1_TFBS_sens
2L	8925812	2L_8925812_SNP [dm3] 2L_8925812_SNP [dm6]	T	C	1.028e^-4	0.512	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6560460	2R_6560460_SNP [dm3] 2R_10672955_SNP [dm6]	C	T	1.031e^-4	0.512	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9621525	3L_9621525_SNP [dm3] 3L_9628425_SNP [dm6]	C	A	1.034e^-4	0.512	UPSTREAM CG8336 INTRON Or67b
3R	21921291	3R_21921291_SNP [dm3] 3R_26095569_SNP [dm6]	C	G	1.036e^-4	0.512	INTRON dys	regulatory region REDfly_CRMs
2R	16121567	2R_16121567_SNP [dm3] 2R_20234062_SNP [dm6]	T	C	1.038e^-4	0.512	SYNONYMOUS_CODING CG11044 UPSTREAM CG44624
3R	21926207	3R_21926207_SNP [dm3] 3R_26100485_SNP [dm6]	A	G	1.041e^-4	0.512	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	26559004	3R_26559004_SNP [dm3] 3R_30733282_SNP [dm6]	C	A	1.043e^-4	0.512	INTERGENIC
3R	26559334	3R_26559334_SNP [dm3] 3R_30733612_SNP [dm6]	T	A	1.043e^-4	0.512	INTERGENIC
3R	26559335	3R_26559335_SNP [dm3] 3R_30733613_SNP [dm6]	T	G	1.043e^-4	0.512	INTERGENIC
3R	26559363	3R_26559363_SNP [dm3] 3R_30733641_SNP [dm6]	G	A	1.043e^-4	0.512	INTERGENIC
2L	20495079	2L_20495079_SNP [dm3] 2L_20495079_SNP [dm6]	G	A	1.046e^-4	0.512	UTR_5_PRIME CG34007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10042897	3L_10042897_SNP [dm3] 3L_10049797_SNP [dm6]	A	G	1.048e^-4	0.512	INTRON dpr6
3R	21728998	3R_21728998_SNP [dm3] 3R_25903276_SNP [dm6]	T	A	1.050e^-4	0.512	SYNONYMOUS_CODING CG31089 INTRON CR43259
3R	26591918	3R_26591918_DEL [dm3] 3R_30766196_DEL [dm6]	GCCCAG	G	1.055e^-4	0.512	UTR_5_PRIME zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	24406067	3R_24406067_SNP [dm3] 3R_28580345_SNP [dm6]	G	T	1.059e^-4	0.512	DOWNSTREAM fkh INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24406628	3R_24406628_SNP [dm3] 3R_28580906_SNP [dm6]	G	T	1.059e^-4	0.512	DOWNSTREAM fkh INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	3679890	2R_3679890_SNP [dm3] 2R_7792385_SNP [dm6]	A	G	1.064e^-4	0.512	SYNONYMOUS_CODING Gapdh1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9796288	3L_9796288_SNP [dm3] 3L_9803188_SNP [dm6]	C	T	1.066e^-4	0.512	DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20871137	2L_20871137_SNP [dm3] 2L_20871137_SNP [dm6]	G	T	1.075e^-4	0.512	UTR_3_PRIME CG14401 DOWNSTREAM sky & 1 other
2R	3418130	2R_3418130_SNP [dm3] 2R_7530625_SNP [dm6]	G	A	1.076e^-4	0.512	UTR_5_PRIME Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	11498080	2R_11498080_SNP [dm3] 2R_15610575_SNP [dm6]	A	C	1.078e^-4	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5467684	2L_5467684_SNP [dm3] 2L_5467684_SNP [dm6]	T	C	1.078e^-4	0.512	DOWNSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	19129882	3R_19129882_DEL [dm3] 3R_23304160_DEL [dm6]	CGCGCGCC	C	1.083e^-4	0.512	INTRON pnt	TF binding site BDTNP1_TFBS_dl
3R	25263572	3R_25263572_SNP [dm3] 3R_29437850_SNP [dm6]	T	C	1.092e^-4	0.512	INTRON Ptp99A
X	5845050	X_5845050_SNP [dm3] X_5951017_SNP [dm6]	G	A	1.096e^-4	0.512	DOWNSTREAM CG6041 INTRON CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5845257	X_5845257_SNP [dm3] X_5951224_SNP [dm6]	A	T	1.096e^-4	0.512	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12749295	X_12749295_SNP [dm3] X_12855262_SNP [dm6]	A	G	1.102e^-4	0.512	DOWNSTREAM CG4661 INTRON Pde9
3R	13495664	3R_13495664_SNP [dm3] 3R_17669942_SNP [dm6]	C	A	1.103e^-4	0.512	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17861004	2R_17861004_SNP [dm3] 2R_21973499_SNP [dm6]	T	C	1.107e^-4	0.512	SYNONYMOUS_CODING CG9304	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9609801	3L_9609801_SNP [dm3] 3L_9616701_SNP [dm6]	G	A	1.111e^-4	0.512	INTRON LanB2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20482302	2L_20482302_SNP [dm3] 2L_20482302_SNP [dm6]	A	G	1.113e^-4	0.512	INTRON CR44980	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25264136	3R_25264136_SNP [dm3] 3R_29438414_SNP [dm6]	C	G	1.113e^-4	0.512	INTRON Ptp99A
3R	26980219	3R_26980219_SNP [dm3] 3R_31154497_SNP [dm6]	T	C	1.115e^-4	0.512	INTRON Gycbeta100B
3R	20222914	3R_20222914_SNP [dm3] 3R_24397192_SNP [dm6]	A	G	1.121e^-4	0.512	UTR_3_PRIME nAChRalpha1
2L	2597018	2L_2597018_SNP [dm3] 2L_2597018_SNP [dm6]	T	C	1.127e^-4	0.512	INTERGENIC
3L	9985596	3L_9985596_SNP [dm3] 3L_9992496_SNP [dm6]	A	C	1.128e^-4	0.512	INTRON dpr6
3R	8775303	3R_8775303_SNP [dm3] 3R_12949581_SNP [dm6]	A	G	1.134e^-4	0.512	DOWNSTREAM grsm INTERGENIC
3L	10028293	3L_10028293_SNP [dm3] 3L_10035193_SNP [dm6]	T	A	1.135e^-4	0.512	INTRON dpr6
2R	6726486	2R_6726486_SNP [dm3] 2R_10838981_SNP [dm6]	A	G	1.138e^-4	0.512	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10042886	3L_10042886_SNP [dm3] 3L_10049786_SNP [dm6]	T	C	1.142e^-4	0.512	INTRON dpr6
2L	147254	2L_147254_SNP [dm3] 2L_147254_SNP [dm6]	C	T	1.143e^-4	0.512	INTRON CG11455 & 1 other
2L	224964	2L_224964_SNP [dm3] 2L_224964_SNP [dm6]	T	G	1.143e^-4	0.512	DOWNSTREAM CR44222 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	252466	2L_252466_SNP [dm3] 2L_252466_SNP [dm6]	G	T	1.143e^-4	0.512	UPSTREAM Rpp30 DOWNSTREAM CG3645 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	18631009	2L_18631009_DEL [dm3] 2L_18631009_DEL [dm6]	ATTAAGCTCAGACA...	A	1.146e^-4	0.512	INTRON MESR3
2L	5211004	2L_5211004_SNP [dm3] 2L_5211004_SNP [dm6]	T	G	1.150e^-4	0.512	SYNONYMOUS_CODING Cyp28d1
3R	19189928	3R_19189928_SNP [dm3] 3R_23364206_SNP [dm6]	G	C	1.153e^-4	0.512	UPSTREAM CG4408 INTERGENIC
3R	26974835	3R_26974835_SNP [dm3] 3R_31149113_SNP [dm6]	A	G	1.154e^-4	0.512	INTRON Gycbeta100B
3R	26975021	3R_26975021_SNP [dm3] 3R_31149299_SNP [dm6]	G	A	1.154e^-4	0.512	INTRON Gycbeta100B
3R	26976241	3R_26976241_SNP [dm3] 3R_31150519_SNP [dm6]	T	G	1.154e^-4	0.512	INTRON Gycbeta100B
2L	128199	2L_128199_SNP [dm3] 2L_128199_SNP [dm6]	C	A	1.162e^-4	0.512	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_Trl
3R	26577521	3R_26577521_SNP [dm3] 3R_30751799_SNP [dm6]	G	A	1.167e^-4	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4690368	X_4690368_SNP [dm3] X_4796335_SNP [dm6]	T	G	1.176e^-4	0.512	DOWNSTREAM CG2861 INTERGENIC
2L	7908781	2L_7908781_SNP [dm3] 2L_7908781_SNP [dm6]	A	C	1.179e^-4	0.512	INTRON Snoo
2L	7908782	2L_7908782_SNP [dm3] 2L_7908782_SNP [dm6]	C	A	1.179e^-4	0.512	INTRON Snoo
3R	25016689	3R_25016689_SNP [dm3] 3R_29190967_SNP [dm6]	T	C	1.181e^-4	0.512	INTRON CG14509
2R	10013673	2R_10013673_SNP [dm3] 2R_14126168_SNP [dm6]	C	T	1.181e^-4	0.512	INTRON Prosap
3L	7741361	3L_7741361_SNP [dm3] 3L_7748261_SNP [dm6]	C	A	1.187e^-4	0.512	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19599842	X_19599842_SNP [dm3] X_19705809_SNP [dm6]	C	T	1.191e^-4	0.512	SYNONYMOUS_CODING CG14230 DOWNSTREAM meso18E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21560851	3R_21560851_SNP [dm3] 3R_25735129_SNP [dm6]	T	A	1.192e^-4	0.512	INTRON LpR2
2R	16337769	2R_16337769_SNP [dm3] 2R_20450264_SNP [dm6]	G	A	1.196e^-4	0.512	INTRON CG12484
3L	8441217	3L_8441217_SNP [dm3] 3L_8448117_SNP [dm6]	A	T	1.198e^-4	0.512	INTRON CG6983	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	21926859	3R_21926859_SNP [dm3] 3R_26101137_SNP [dm6]	T	A	1.200e^-4	0.512	INTERGENIC
2R	10604023	2R_10604023_SNP [dm3] 2R_14716518_SNP [dm6]	G	A	1.201e^-4	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6255597	3R_6255597_SNP [dm3] 3R_10429875_SNP [dm6]	T	C	1.203e^-4	0.512	INTERGENIC
3L	10429531	3L_10429531_DEL [dm3] 3L_10436431_DEL [dm6]	TGTGTGT	T	1.205e^-4	0.512	INTERGENIC
2R	12329367	2R_12329367_SNP [dm3] 2R_16441862_SNP [dm6]	C	T	1.211e^-4	0.512	INTERGENIC
3R	26975218	3R_26975218_SNP [dm3] 3R_31149496_SNP [dm6]	G	A	1.211e^-4	0.512	INTRON Gycbeta100B
X	13223372	X_13223372_DEL [dm3] X_13329339_DEL [dm6]	AGAT	A	1.214e^-4	0.512	UPSTREAM Jafrac1 DOWNSTREAM IP3K2 INTERGENIC
X	13223380	X_13223380_DEL [dm3] X_13329347_DEL [dm6]	GG	G	1.214e^-4	0.512	UPSTREAM Jafrac1 DOWNSTREAM IP3K2 INTERGENIC
X	13223387	X_13223387_DEL [dm3] X_13329354_DEL [dm6]	AGAATA	A	1.214e^-4	0.512	UPSTREAM Jafrac1 DOWNSTREAM IP3K2 INTERGENIC
X	13223416	X_13223416_DEL [dm3] X_13329383_DEL [dm6]	TTGCGCCAAAGTGGAATAGA...	G	1.214e^-4	0.512	UPSTREAM Jafrac1 DOWNSTREAM IP3K2 INTERGENIC
3L	18064407	3L_18064407_INS [dm3] 3L_18071307_INS [dm6]	A	GTTTAAGTT	1.214e^-4	0.512	INTRON CG44005
2R	10568582	2R_10568582_SNP [dm3] 2R_14681077_SNP [dm6]	G	A	1.221e^-4	0.512	INTRON mspo
3L	9756272	3L_9756272_SNP [dm3] 3L_9763172_SNP [dm6]	G	A	1.228e^-4	0.512	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20496420	2L_20496420_DEL [dm3] 2L_20496420_DEL [dm6]	AGTCGCAGTCGCA...	A	1.229e^-4	0.512	DOWNSTREAM CG34007 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17581888	2R_17581888_SNP [dm3] 2R_21694383_SNP [dm6]	T	C	1.230e^-4	0.512	INTRON CngB	TF binding site mE1_TFBS_cad
2L	7725750	2L_7725750_SNP [dm3] 2L_7725750_SNP [dm6]	C	T	1.233e^-4	0.512	INTRON CG13795
2L	9425673	2L_9425673_DEL [dm3] 2L_9425673_DEL [dm6]	TTGTAACT	T	1.238e^-4	0.512	INTRON Mco1
3R	2039802	3R_2039802_SNP [dm3] 3R_6214080_SNP [dm6]	T	C	1.239e^-4	0.512	DOWNSTREAM Osi2 INTERGENIC
3R	23247044	3R_23247044_SNP [dm3] 3R_27421322_SNP [dm6]	T	C	1.241e^-4	0.512	INTRON side
3R	26976097	3R_26976097_SNP [dm3] 3R_31150375_SNP [dm6]	G	T	1.242e^-4	0.512	INTRON Gycbeta100B
X	13421630	X_13421630_SNP [dm3] X_13527597_SNP [dm6]	G	C	1.245e^-4	0.512	UPSTREAM CG15754 DOWNSTREAM Neto INTERGENIC
X	17158552	X_17158552_SNP [dm3] X_17264519_SNP [dm6]	A	C	1.247e^-4	0.512	UPSTREAM f INTRON f
3R	25263875	3R_25263875_SNP [dm3] 3R_29438153_SNP [dm6]	C	T	1.248e^-4	0.512	INTRON Ptp99A
3R	19179691	3R_19179691_SNP [dm3] 3R_23353969_SNP [dm6]	T	A	1.251e^-4	0.512	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17581896	2R_17581896_SNP [dm3] 2R_21694391_SNP [dm6]	T	C	1.252e^-4	0.512	INTRON CngB	TF binding site mE1_TFBS_cad
3R	6180669	3R_6180669_SNP [dm3] 3R_10354947_SNP [dm6]	C	A	1.252e^-4	0.512	INTRON jumu	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10429530	3L_10429530_SNP [dm3] 3L_10436430_SNP [dm6]	G	A	1.261e^-4	0.512	INTERGENIC
3L	10429542	3L_10429542_SNP [dm3] 3L_10436442_SNP [dm6]	C	T	1.261e^-4	0.512	INTERGENIC
X	21836533	X_21836533_SNP [dm3] X_22434698_SNP [dm6]	T	G	1.262e^-4	0.512	INTERGENIC	transposable element FlyBase
3L	9609890	3L_9609890_SNP [dm3] 3L_9616790_SNP [dm6]	A	G	1.263e^-4	0.512	INTRON LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18068875	3L_18068875_SNP [dm3] 3L_18075775_SNP [dm6]	G	A	1.266e^-4	0.512	UPSTREAM CR45391 INTERGENIC
2R	6938291	2R_6938291_SNP [dm3] 2R_11050786_SNP [dm6]	C	T	1.270e^-4	0.512	INTRON luna
3R	15632953	3R_15632953_SNP [dm3] 3R_19807231_SNP [dm6]	A	T	1.271e^-4	0.512	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	16613456	3R_16613456_SNP [dm3] 3R_20787734_SNP [dm6]	T	A	1.275e^-4	0.512	INTRON Syp
2R	10003134	2R_10003134_SNP [dm3] 2R_14115629_SNP [dm6]	C	T	1.277e^-4	0.512	INTRON Prosap
2R	6985880	2R_6985880_INS [dm3] 2R_11098375_INS [dm6]	G	GG	1.288e^-4	0.512	INTRON luna
X	6268155	X_6268155_INS [dm3] X_6374122_INS [dm6]	C	CATCCTGC	1.290e^-4	0.512	INTERGENIC
2L	11209070	2L_11209070_SNP [dm3] 2L_11209070_SNP [dm6]	T	C	1.291e^-4	0.512	INTERGENIC	silencer mE1_HDAC_PRE
3R	19340987	3R_19340987_SNP [dm3] 3R_23515265_SNP [dm6]	C	T	1.296e^-4	0.512	SYNONYMOUS_CODING Irk2
2L	20505698	2L_20505698_SNP [dm3] 2L_20505698_SNP [dm6]	G	T	1.310e^-4	0.512	INTERGENIC
2R	11801084	2R_11801084_SNP [dm3] 2R_15913579_SNP [dm6]	C	A	1.310e^-4	0.512	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11512331	2R_11512331_SNP [dm3] 2R_15624826_SNP [dm6]	T	G	1.312e^-4	0.512	INTRON CG42524
3R	21853278	3R_21853278_SNP [dm3] 3R_26027556_SNP [dm6]	A	T	1.320e^-4	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	7572088	3L_7572088_SNP [dm3] 3L_7578988_SNP [dm6]	T	A	1.328e^-4	0.512	INTERGENIC
2L	5627170	2L_5627170_SNP [dm3] 2L_5627170_SNP [dm6]	G	A	1.328e^-4	0.512	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2L	5627433	2L_5627433_SNP [dm3] 2L_5627433_SNP [dm6]	A	T	1.328e^-4	0.512	INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10691595	2R_10691595_SNP [dm3] 2R_14804090_SNP [dm6]	C	T	1.331e^-4	0.512	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26560328	3R_26560328_DEL [dm3] 3R_30734606_DEL [dm6]	GC	A	1.336e^-4	0.512	INTERGENIC
2R	16120451	2R_16120451_SNP [dm3] 2R_20232946_SNP [dm6]	G	T	1.339e^-4	0.512	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2L	12839221	2L_12839221_SNP [dm3] 2L_12839221_SNP [dm6]	G	A	1.342e^-4	0.512	INTERGENIC
2L	6120488	2L_6120488_SNP [dm3] 2L_6120488_SNP [dm6]	C	A	1.344e^-4	0.512	UTR_3_PRIME CG31642 UPSTREAM stai INTRON stai
3L	1119778	3L_1119778_INS [dm3] 3L_1119778_INS [dm6]	G	GC	1.347e^-4	0.512	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21925955	3R_21925955_SNP [dm3] 3R_26100233_SNP [dm6]	A	C	1.357e^-4	0.512	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21945111	3R_21945111_SNP [dm3] 3R_26119389_SNP [dm6]	G	A	1.357e^-4	0.512	INTRON CG31324
3R	13706744	3R_13706744_SNP [dm3] 3R_17881022_SNP [dm6]	C	T	1.357e^-4	0.512	INTRON Rim	TF binding site mE1_TFBS_chinmo
X	5679633	X_5679633_SNP [dm3] X_5785600_SNP [dm6]	G	A	1.358e^-4	0.512	NON_SYNONYMOUS_CODING CG42699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7572133	3L_7572133_SNP [dm3] 3L_7579033_SNP [dm6]	A	T	1.360e^-4	0.512	INTERGENIC
3R	6193262	3R_6193262_SNP [dm3] 3R_10367540_SNP [dm6]	A	G	1.361e^-4	0.512	UPSTREAM Rfx INTRON Rfx	TF binding site BDTNP1_TFBS_dl
3L	10021869	3L_10021869_SNP [dm3] 3L_10028769_SNP [dm6]	G	C	1.361e^-4	0.512	DOWNSTREAM CR45155 INTRON dpr6
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	1.362e^-4	0.512	INTRON CG15630
X	11825825	X_11825825_SNP [dm3] X_11931792_SNP [dm6]	G	A	1.362e^-4	0.512	UTR_3_PRIME cac UPSTREAM CG10362 DOWNSTREAM cac
2R	14085680	2R_14085680_SNP [dm3] 2R_18198175_SNP [dm6]	C	A	1.364e^-4	0.512	INTERGENIC
3R	25264082	3R_25264082_INS [dm3] 3R_29438360_INS [dm6]	T	TT	1.366e^-4	0.512	INTRON Ptp99A
2R	10100485	2R_10100485_SNP [dm3] 2R_14212980_SNP [dm6]	A	G	1.371e^-4	0.512	UPSTREAM Sox15 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25397435	3R_25397435_SNP [dm3] 3R_29571713_SNP [dm6]	T	G	1.373e^-4	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21944300	3R_21944300_INS [dm3] 3R_26118578_INS [dm6]	T	TTT	1.374e^-4	0.512	INTRON CG31324
2L	13197091	2L_13197091_DEL [dm3] 2L_13197091_DEL [dm6]	GTTG	G	1.378e^-4	0.512	UTR_3_PRIME Edem2 DOWNSTREAM CG16972
2L	11209110	2L_11209110_SNP [dm3] 2L_11209110_SNP [dm6]	T	G	1.378e^-4	0.512	INTERGENIC	silencer mE1_HDAC_PRE
3L	550921	3L_550921_SNP [dm3] 3L_550921_SNP [dm6]	A	G	1.379e^-4	0.512	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10234282	3L_10234282_SNP [dm3] 3L_10241182_SNP [dm6]	C	A	1.379e^-4	0.512	DOWNSTREAM CR45403 INTERGENIC
3L	12604523	3L_12604523_SNP [dm3] 3L_12611423_SNP [dm6]	G	A	1.382e^-4	0.512	INTRON caup
3R	23343319	3R_23343319_SNP [dm3] 3R_27517597_SNP [dm6]	C	T	1.384e^-4	0.512	UPSTREAM CG13972 INTERGENIC
3R	10191214	3R_10191214_SNP [dm3] 3R_14365492_SNP [dm6]	T	C	1.387e^-4	0.512	INTRON NK7.1	TF binding site mE1_TFBS_cnc
3R	26471041	3R_26471041_SNP [dm3] 3R_30645319_SNP [dm6]	A	T	1.388e^-4	0.512	NON_SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
2R	3445414	2R_3445414_SNP [dm3] 2R_7557909_SNP [dm6]	G	A	1.390e^-4	0.512	SYNONYMOUS_CODING Corin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6280794	2R_6280794_SNP [dm3] 2R_10393289_SNP [dm6]	G	C	1.392e^-4	0.512	INTRON CG42732
3L	3948664	3L_3948664_SNP [dm3] 3L_3948664_SNP [dm6]	A	C	1.394e^-4	0.512	UTR_3_PRIME CG10853 DOWNSTREAM CG14983
2L	20862619	2L_20862619_SNP [dm3] 2L_20862619_SNP [dm6]	A	T	1.400e^-4	0.512	EXON CR9337
2L	116793	2L_116793_SNP [dm3] 2L_116793_SNP [dm6]	T	C	1.400e^-4	0.512	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
X	9686909	X_9686909_INS [dm3] X_9792876_INS [dm6]	T	TT	1.406e^-4	0.512	INTRON CG32698
X	19051209	X_19051209_SNP [dm3] X_19157176_SNP [dm6]	A	T	1.408e^-4	0.512	INTRON RhoGAP18B
3R	26976286	3R_26976286_INS [dm3] 3R_31150564_INS [dm6]	T	TGTTCGTTTGTT...	1.409e^-4	0.512	INTRON Gycbeta100B
3L	5356412	3L_5356412_SNP [dm3] 3L_5363312_SNP [dm6]	T	A	1.422e^-4	0.512	UTR_3_PRIME Uev1A DOWNSTREAM CG4769
3R	23036235	3R_23036235_DEL [dm3] 3R_27210513_DEL [dm6]	GAGGATCCG	G	1.425e^-4	0.512	INTERGENIC
3R	23646766	3R_23646766_SNP [dm3] 3R_27821044_SNP [dm6]	T	A	1.431e^-4	0.512	INTRON CG34353
3R	21969186	3R_21969186_SNP [dm3] 3R_26143464_SNP [dm6]	A	T	1.432e^-4	0.512	INTERGENIC
3R	21926213	3R_21926213_DEL [dm3] 3R_26100491_DEL [dm6]	AT	A	1.433e^-4	0.512	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	3536365	X_3536365_SNP [dm3] X_3642332_SNP [dm6]	T	G	1.435e^-4	0.512	INTRON AstA-R1
3R	26595596	3R_26595596_SNP [dm3] 3R_30769874_SNP [dm6]	A	G	1.443e^-4	0.512	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	25604929	3R_25604929_SNP [dm3] 3R_29779207_SNP [dm6]	A	G	1.444e^-4	0.512	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
X	9248277	X_9248277_INS [dm3] X_9354244_INS [dm6]	A	ATGA	1.446e^-4	0.512	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20958681	2R_20958681_SNP [dm3] 2R_25071158_SNP [dm6]	A	T	1.447e^-4	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20959943	2R_20959943_SNP [dm3] 2R_25072420_SNP [dm6]	C	T	1.447e^-4	0.512	DOWNSTREAM gol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25317031	3R_25317031_SNP [dm3] 3R_29491309_SNP [dm6]	C	A	1.451e^-4	0.512	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13707805	3R_13707805_SNP [dm3] 3R_17882083_SNP [dm6]	G	A	1.452e^-4	0.512	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25263800	3R_25263800_SNP [dm3] 3R_29438078_SNP [dm6]	C	G	1.452e^-4	0.512	INTRON Ptp99A
3R	14437750	3R_14437750_SNP [dm3] 3R_18612028_SNP [dm6]	T	A	1.453e^-4	0.512	INTRON qin & 1 other
3R	24179750	3R_24179750_SNP [dm3] 3R_28354028_SNP [dm6]	G	T	1.454e^-4	0.512	DOWNSTREAM Or98b INTERGENIC
3R	24426096	3R_24426096_SNP [dm3] 3R_28600374_SNP [dm6]	T	C	1.461e^-4	0.512	UPSTREAM Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA
3R	13500792	3R_13500792_SNP [dm3] 3R_17675070_SNP [dm6]	A	C	1.462e^-4	0.512	SPLICE_SITE_REGION alt INTRON alt
2L	20654396	2L_20654396_SNP [dm3] 2L_20654396_SNP [dm6]	G	A	1.464e^-4	0.512	SYNONYMOUS_CODING bru	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	7173997	3L_7173997_SNP [dm3] 3L_7180897_SNP [dm6]	A	T	1.465e^-4	0.512	INTRON Dscam2
2R	11334653	2R_11334653_SNP [dm3] 2R_15447148_SNP [dm6]	A	G	1.469e^-4	0.512	INTRON CG43729
2L	3449480	2L_3449480_SNP [dm3] 2L_3449480_SNP [dm6]	G	C	1.470e^-4	0.512	UPSTREAM Snx1 INTERGENIC
3R	21747786	3R_21747786_SNP [dm3] 3R_25922064_SNP [dm6]	C	T	1.472e^-4	0.512	NON_SYNONYMOUS_CODING CG14546	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11112493	3L_11112493_SNP [dm3] 3L_11119393_SNP [dm6]	C	T	1.473e^-4	0.512	UTR_5_PRIME fd68A UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20877087	2L_20877087_SNP [dm3] 2L_20877087_SNP [dm6]	C	G	1.475e^-4	0.512	SPLICE_SITE_REGION sky & 1 other INTRON sky & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9627372	2L_9627372_SNP [dm3] 2L_9627372_SNP [dm6]	G	A	1.479e^-4	0.512	INTERGENIC
2R	2968388	2R_2968388_SNP [dm3] 2R_7080883_SNP [dm6]	C	G	1.481e^-4	0.512	INTERGENIC
3L	9781499	3L_9781499_SNP [dm3] 3L_9788399_SNP [dm6]	T	A	1.483e^-4	0.512	UTR_3_PRIME Zasp67
3L	17527028	3L_17527028_SNP [dm3] 3L_17533928_SNP [dm6]	C	A	1.483e^-4	0.512	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25016977	3R_25016977_SNP [dm3] 3R_29191255_SNP [dm6]	G	C	1.484e^-4	0.512	INTRON CG14509
2R	15910167	2R_15910167_SNP [dm3] 2R_20022662_SNP [dm6]	T	A	1.486e^-4	0.512	INTERGENIC
2L	11208764	2L_11208764_DEL [dm3] 2L_11208764_DEL [dm6]	TAGATGGGATGCGGTGGGGC...	T	1.486e^-4	0.512	INTERGENIC
2L	11208787	2L_11208787_INS [dm3] 2L_11208787_INS [dm6]	G	GTGT	1.486e^-4	0.512	INTERGENIC
2L	713184	2L_713184_SNP [dm3] 2L_713184_SNP [dm6]	G	A	1.492e^-4	0.512	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	21945686	3R_21945686_SNP [dm3] 3R_26119964_SNP [dm6]	T	A	1.497e^-4	0.512	INTRON CG31324
2L	21064263	2L_21064263_SNP [dm3] 2L_21064263_SNP [dm6]	T	C	1.499e^-4	0.512	INTRON CG9265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	9686901	X_9686901_DEL [dm3] X_9792868_DEL [dm6]	TTTCTT	T	1.500e^-4	0.512	INTRON CG32698
2R	3506004	2R_3506004_SNP [dm3] 2R_7618499_SNP [dm6]	T	A	1.510e^-4	0.512	INTRON CG1358	TF binding site mE1_TFBS_chinmo
2L	5626713	2L_5626713_SNP [dm3] 2L_5626713_SNP [dm6]	G	A	1.512e^-4	0.512	UTR_3_PRIME CG31646
3L	9606367	3L_9606367_SNP [dm3] 3L_9613267_SNP [dm6]	C	G	1.514e^-4	0.512	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
2L	20505641	2L_20505641_SNP [dm3] 2L_20505641_SNP [dm6]	A	T	1.524e^-4	0.512	INTERGENIC
3R	22613362	3R_22613362_DEL [dm3] 3R_26787640_DEL [dm6]	AA	G	1.526e^-4	0.512	INTERGENIC
3R	22613414	3R_22613414_SNP [dm3] 3R_26787692_SNP [dm6]	A	G	1.526e^-4	0.512	INTERGENIC
2R	16109071	2R_16109071_SNP [dm3] 2R_20221566_SNP [dm6]	A	T	1.527e^-4	0.512	EXON CR45423
X	16640909	X_16640909_SNP [dm3] X_16746876_SNP [dm6]	A	C	1.535e^-4	0.512	UPSTREAM CG9634 INTRON CG9634
2R	14870493	2R_14870493_SNP [dm3] 2R_18982988_SNP [dm6]	C	T	1.540e^-4	0.512	INTERGENIC
3L	7572079	3L_7572079_SNP [dm3] 3L_7578979_SNP [dm6]	T	G	1.541e^-4	0.512	INTERGENIC
3L	7572080	3L_7572080_SNP [dm3] 3L_7578980_SNP [dm6]	T	A	1.541e^-4	0.512	INTERGENIC
2L	11696047	2L_11696047_SNP [dm3] 2L_11696047_SNP [dm6]	C	G	1.543e^-4	0.512	NON_SYNONYMOUS_CODING CG4988
2L	4349775	2L_4349775_SNP [dm3] 2L_4349775_SNP [dm6]	C	T	1.545e^-4	0.512	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4351116	2L_4351116_SNP [dm3] 2L_4351116_SNP [dm6]	C	T	1.545e^-4	0.512	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4351573	2L_4351573_SNP [dm3] 2L_4351573_SNP [dm6]	G	A	1.545e^-4	0.512	DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4352078	2L_4352078_SNP [dm3] 2L_4352078_SNP [dm6]	T	G	1.545e^-4	0.512	UPSTREAM CG15429 DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6954059	2R_6954059_SNP [dm3] 2R_11066554_SNP [dm6]	C	A	1.545e^-4	0.512	INTRON luna
3L	16030080	3L_16030080_SNP [dm3] 3L_16036980_SNP [dm6]	G	A	1.545e^-4	0.512	NON_SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9251761	3L_9251761_SNP [dm3] 3L_9258661_SNP [dm6]	G	A	1.545e^-4	0.512	INTRON GluRIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16571018	3R_16571018_SNP [dm3] 3R_20745296_SNP [dm6]	G	T	1.545e^-4	0.512	NON_SYNONYMOUS_CODING CG31200 INTRON CG42322
3R	16571038	3R_16571038_SNP [dm3] 3R_20745316_SNP [dm6]	T	A	1.545e^-4	0.512	NON_SYNONYMOUS_CODING CG31200 INTRON CG42322
3R	16571115	3R_16571115_SNP [dm3] 3R_20745393_SNP [dm6]	C	A	1.545e^-4	0.512	UPSTREAM CG31200 INTRON CG42322
3R	4006223	3R_4006223_SNP [dm3] 3R_8180501_SNP [dm6]	A	T	1.545e^-4	0.512	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2L	20655064	2L_20655064_SNP [dm3] 2L_20655064_SNP [dm6]	C	A	1.545e^-4	0.512	NON_SYNONYMOUS_CODING bru	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	1686074	2R_1686074_SNP [dm3] 2R_5798569_SNP [dm6]	C	T	1.549e^-4	0.512	UPSTREAM Or42b INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13476015	3R_13476015_SNP [dm3] 3R_17650293_SNP [dm6]	T	C	1.565e^-4	0.515	INTRON CG14322
3R	26577517	3R_26577517_SNP [dm3] 3R_30751795_SNP [dm6]	G	A	1.567e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4151425	2L_4151425_SNP [dm3] 2L_4151425_SNP [dm6]	C	T	1.574e^-4	0.515	DOWNSTREAM CG2955 INTERGENIC
3R	26085299	3R_26085299_SNP [dm3] 3R_30259577_SNP [dm6]	T	C	1.574e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4538266	3L_4538266_SNP [dm3] 3L_4538266_SNP [dm6]	A	C	1.578e^-4	0.515	SYNONYMOUS_CODING CG11353	TF binding site BDTNP1_TFBS_twi
3R	26975709	3R_26975709_SNP [dm3] 3R_31149987_SNP [dm6]	C	T	1.579e^-4	0.515	INTRON Gycbeta100B
3R	24654262	3R_24654262_SNP [dm3] 3R_28828540_SNP [dm6]	G	T	1.584e^-4	0.515	INTRON WASp
3L	7572109	3L_7572109_SNP [dm3] 3L_7579009_SNP [dm6]	A	C	1.588e^-4	0.515	INTERGENIC
3R	26975748	3R_26975748_SNP [dm3] 3R_31150026_SNP [dm6]	C	T	1.601e^-4	0.515	INTRON Gycbeta100B
2L	10730925	2L_10730925_SNP [dm3] 2L_10730925_SNP [dm6]	A	C	1.603e^-4	0.515	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4771878	3R_4771878_SNP [dm3] 3R_8946156_SNP [dm6]	G	A	1.612e^-4	0.515	INTERGENIC
3R	19395056	3R_19395056_INS [dm3] 3R_23569334_INS [dm6]	T	TGT	1.617e^-4	0.515	INTRON beat-IV
3L	9609343	3L_9609343_SNP [dm3] 3L_9616243_SNP [dm6]	G	T	1.618e^-4	0.515	INTRON LanB2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7901973	3L_7901973_SNP [dm3] 3L_7908873_SNP [dm6]	T	G	1.620e^-4	0.515	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	11525941	2R_11525941_SNP [dm3] 2R_15638436_SNP [dm6]	A	T	1.623e^-4	0.515	INTRON CG42524
2L	1141066	2L_1141066_SNP [dm3] 2L_1141066_SNP [dm6]	T	C	1.623e^-4	0.515	UTR_3_PRIME CG4577 DOWNSTREAM CG4577
3L	9617260	3L_9617260_SNP [dm3] 3L_9624160_SNP [dm6]	A	G	1.625e^-4	0.515	UPSTREAM CG3335 DOWNSTREAM LanB2 INTERGENIC
X	4254521	X_4254521_SNP [dm3] X_4360488_SNP [dm6]	G	A	1.630e^-4	0.515	SYNONYMOUS_CODING norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4713865	3R_4713865_SNP [dm3] 3R_8888143_SNP [dm6]	A	T	1.633e^-4	0.515	INTRON pyd
3R	6780841	3R_6780841_DEL [dm3] 3R_10955119_DEL [dm6]	TT	T	1.634e^-4	0.515	INTERGENIC
2R	7521327	2R_7521327_SNP [dm3] 2R_11633822_SNP [dm6]	G	T	1.635e^-4	0.515	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6106232	X_6106232_SNP [dm3] X_6212199_SNP [dm6]	G	A	1.639e^-4	0.515	INTERGENIC
3L	9621519	3L_9621519_SNP [dm3] 3L_9628419_SNP [dm6]	G	A	1.641e^-4	0.515	UPSTREAM CG8336 INTRON Or67b
3R	26570746	3R_26570746_SNP [dm3] 3R_30745024_SNP [dm6]	G	A	1.644e^-4	0.515	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2L	6120493	2L_6120493_SNP [dm3] 2L_6120493_SNP [dm6]	G	T	1.645e^-4	0.515	UTR_3_PRIME CG31642 UPSTREAM stai INTRON stai
3R	20603443	3R_20603443_SNP [dm3] 3R_24777721_SNP [dm6]	G	C	1.648e^-4	0.515	INTRON CG42331
2L	9982170	2L_9982170_SNP [dm3] 2L_9982170_SNP [dm6]	A	T	1.649e^-4	0.515	INTERGENIC
3R	20711754	3R_20711754_SNP [dm3] 3R_24886032_SNP [dm6]	C	T	1.650e^-4	0.515	INTRON CG31121
2R	10245119	2R_10245119_SNP [dm3] 2R_14357614_SNP [dm6]	A	G	1.659e^-4	0.515	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	2031924	3L_2031924_SNP [dm3] 3L_2031924_SNP [dm6]	C	G	1.660e^-4	0.515	INTERGENIC
2R	6254608	2R_6254608_SNP [dm3] 2R_10367103_SNP [dm6]	A	T	1.660e^-4	0.515	INTRON CG42732
3R	6152256	3R_6152256_SNP [dm3] 3R_10326534_SNP [dm6]	T	C	1.663e^-4	0.515	INTRON Bruce	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4424729	2L_4424729_SNP [dm3] 2L_4424729_SNP [dm6]	A	C	1.673e^-4	0.515	INTRON CG15431
3L	4538219	3L_4538219_SNP [dm3] 3L_4538219_SNP [dm6]	A	C	1.674e^-4	0.515	INTRON CG11353	TF binding site BDTNP1_TFBS_twi
2L	9982184	2L_9982184_SNP [dm3] 2L_9982184_SNP [dm6]	G	T	1.675e^-4	0.515	INTERGENIC
3R	18263846	3R_18263846_SNP [dm3] 3R_22438124_SNP [dm6]	A	G	1.678e^-4	0.515	INTERGENIC
3R	21721967	3R_21721967_SNP [dm3] 3R_25896245_SNP [dm6]	A	G	1.679e^-4	0.515	INTRON CG5948
3L	20886075	3L_20886075_SNP [dm3] 3L_20892975_SNP [dm6]	T	C	1.679e^-4	0.515	INTERGENIC
3R	13486403	3R_13486403_SNP [dm3] 3R_17660681_SNP [dm6]	G	A	1.681e^-4	0.515	INTRON CG14322
3R	21969204	3R_21969204_SNP [dm3] 3R_26143482_SNP [dm6]	C	G	1.682e^-4	0.515	INTERGENIC
3L	9610391	3L_9610391_SNP [dm3] 3L_9617291_SNP [dm6]	A	T	1.682e^-4	0.515	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_inv
2R	15135496	2R_15135496_SNP [dm3] 2R_19247991_SNP [dm6]	C	G	1.682e^-4	0.515	INTERGENIC
3L	7515317	3L_7515317_DEL [dm3] 3L_7522217_DEL [dm6]	TA	C	1.686e^-4	0.515	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21945921	3R_21945921_SNP [dm3] 3R_26120199_SNP [dm6]	C	A	1.688e^-4	0.515	INTRON CG31324
2R	6056697	2R_6056697_SNP [dm3] 2R_10169192_SNP [dm6]	A	T	1.692e^-4	0.515	INTRON KCNQ
3R	22745249	3R_22745249_SNP [dm3] 3R_26919527_SNP [dm6]	C	T	1.694e^-4	0.515	INTRON sda	TF binding site mE1_TFBS_inv
2R	14870473	2R_14870473_SNP [dm3] 2R_18982968_SNP [dm6]	C	T	1.694e^-4	0.515	INTERGENIC
3R	19413540	3R_19413540_SNP [dm3] 3R_23587818_SNP [dm6]	A	G	1.701e^-4	0.515	SYNONYMOUS_CODING CG10182
3L	4986338	3L_4986338_SNP [dm3] 3L_4986338_SNP [dm6]	G	A	1.702e^-4	0.515	INTRON Con
X	14666983	X_14666983_SNP [dm3] X_14772950_SNP [dm6]	G	A	1.705e^-4	0.515	INTERGENIC
2L	146987	2L_146987_SNP [dm3] 2L_146987_SNP [dm6]	G	A	1.711e^-4	0.515	INTRON CG11455 & 1 other
2L	146997	2L_146997_SNP [dm3] 2L_146997_SNP [dm6]	A	T	1.711e^-4	0.515	INTRON CG11455 & 1 other
3L	17551519	3L_17551519_SNP [dm3] 3L_17558419_SNP [dm6]	C	T	1.716e^-4	0.515	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7572126	3L_7572126_SNP [dm3] 3L_7579026_SNP [dm6]	C	A	1.716e^-4	0.515	INTERGENIC
3R	25210162	3R_25210162_SNP [dm3] 3R_29384440_SNP [dm6]	G	A	1.718e^-4	0.515	INTRON Ptp99A
2L	1923029	2L_1923029_INS [dm3] 2L_1923029_INS [dm6]	T	TT	1.719e^-4	0.515	INTRON CG7337
2L	14208359	2L_14208359_SNP [dm3] 2L_14208359_SNP [dm6]	A	T	1.721e^-4	0.515	INTRON Dyrk2
2R	8308169	2R_8308169_SNP [dm3] 2R_12420664_SNP [dm6]	G	C	1.724e^-4	0.515	NON_SYNONYMOUS_CODING CG8834 INTRON CG8834	TF binding site mE1_TFBS_cad
3R	22071139	3R_22071139_SNP [dm3] 3R_26245417_SNP [dm6]	A	G	1.728e^-4	0.515	INTRON CR42745
2L	9990319	2L_9990319_SNP [dm3] 2L_9990319_SNP [dm6]	A	G	1.729e^-4	0.515	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	23395694	3R_23395694_DEL [dm3] 3R_27569972_DEL [dm6]	TT	C	1.731e^-4	0.515	INTRON wdb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23395701	3R_23395701_SNP [dm3] 3R_27569979_SNP [dm6]	C	T	1.731e^-4	0.515	INTRON wdb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6224806	2L_6224806_SNP [dm3] 2L_6224806_SNP [dm6]	C	A	1.732e^-4	0.515	UPSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21470605	3L_21470605_SNP [dm3] 3L_21477505_SNP [dm6]	T	A	1.740e^-4	0.515	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	123820	2L_123820_SNP [dm3] 2L_123820_SNP [dm6]	A	C	1.741e^-4	0.515	INTRON CG11455 & 1 other EXON CR44969	TF binding site BDTNP1_TFBS_da
3R	21931808	3R_21931808_SNP [dm3] 3R_26106086_SNP [dm6]	C	T	1.745e^-4	0.515	UPSTREAM CG31324 INTERGENIC
2L	161983	2L_161983_SNP [dm3] 2L_161983_SNP [dm6]	G	C	1.747e^-4	0.515	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	1383719	2R_1383719_SNP [dm3] 2R_5496214_SNP [dm6]	C	A	1.747e^-4	0.515	UPSTREAM CG30438 & 1 other INTERGENIC
2L	3016386	2L_3016386_SNP [dm3] 2L_3016386_SNP [dm6]	C	T	1.748e^-4	0.515	DOWNSTREAM CG17224 & 1 other INTERGENIC
2L	4871783	2L_4871783_SNP [dm3] 2L_4871783_SNP [dm6]	C	T	1.751e^-4	0.515	INTRON pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	4115226	2R_4115226_DEL [dm3] 2R_8227721_DEL [dm6]	CACGGATGTTTTGTTAGCCA...	C	1.760e^-4	0.516	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21924549	3R_21924549_SNP [dm3] 3R_26098827_SNP [dm6]	A	T	1.765e^-4	0.516	UPSTREAM dys INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10825109	3R_10825109_DEL [dm3] 3R_14999387_DEL [dm6]	TCAATCA	T	1.771e^-4	0.516	INTERGENIC
3R	22854471	3R_22854471_SNP [dm3] 3R_27028749_SNP [dm6]	T	A	1.773e^-4	0.516	INTRON RYa-R
3R	19190171	3R_19190171_SNP [dm3] 3R_23364449_SNP [dm6]	A	G	1.780e^-4	0.516	UPSTREAM CG4408 INTERGENIC
X	14815897	X_14815897_SNP [dm3] X_14921864_SNP [dm6]	C	T	1.780e^-4	0.516	INTRON Flo2 & 1 other
X	14815898	X_14815898_SNP [dm3] X_14921865_SNP [dm6]	T	C	1.780e^-4	0.516	INTRON Flo2 & 1 other
X	5679634	X_5679634_SNP [dm3] X_5785601_SNP [dm6]	C	T	1.782e^-4	0.516	SYNONYMOUS_CODING CG42699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10825120	3R_10825120_SNP [dm3] 3R_14999398_SNP [dm6]	C	T	1.782e^-4	0.516	INTERGENIC
X	18621725	X_18621725_SNP [dm3] X_18727692_SNP [dm6]	C	G	1.783e^-4	0.516	INTERGENIC
2L	7088824	2L_7088824_SNP [dm3] 2L_7088824_SNP [dm6]	A	C	1.786e^-4	0.516	INTERGENIC
2R	5193365	2R_5193365_SNP [dm3] 2R_9305860_SNP [dm6]	A	G	1.800e^-4	0.519	INTRON Myd88	TF binding site mE1_TFBS_cad
3R	19211670	3R_19211670_SNP [dm3] 3R_23385948_SNP [dm6]	G	A	1.807e^-4	0.52	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1923130	2L_1923130_SNP [dm3] 2L_1923130_SNP [dm6]	G	C	1.810e^-4	0.52	INTRON CG7337
2R	11510514	2R_11510514_SNP [dm3] 2R_15623009_SNP [dm6]	T	C	1.826e^-4	0.52	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	13589085	2R_13589085_SNP [dm3] 2R_17701580_SNP [dm6]	G	A	1.827e^-4	0.52	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others INTRON Uhg1
2L	6820415	2L_6820415_SNP [dm3] 2L_6820415_SNP [dm6]	G	T	1.832e^-4	0.52	INTERGENIC
2L	6120622	2L_6120622_SNP [dm3] 2L_6120622_SNP [dm6]	C	A	1.834e^-4	0.52	UPSTREAM stai DOWNSTREAM CG31642 INTRON stai
2L	1922859	2L_1922859_INS [dm3] 2L_1922859_INS [dm6]	G	TT	1.836e^-4	0.52	INTRON CG7337
2L	1885857	2L_1885857_SNP [dm3] 2L_1885857_SNP [dm6]	T	G	1.837e^-4	0.52	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9825030	2R_9825030_SNP [dm3] 2R_13937525_SNP [dm6]	G	A	1.837e^-4	0.52	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	14870663	2R_14870663_SNP [dm3] 2R_18983158_SNP [dm6]	C	T	1.838e^-4	0.52	INTERGENIC
3L	12381224	3L_12381224_SNP [dm3] 3L_12388124_SNP [dm6]	G	C	1.846e^-4	0.52	UPSTREAM Ncc69 INTRON Ncc69
2L	9425935	2L_9425935_SNP [dm3] 2L_9425935_SNP [dm6]	C	A	1.851e^-4	0.52	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
X	20535778	X_20535778_SNP [dm3] X_20664751_SNP [dm6]	C	A	1.851e^-4	0.52	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5896687	2L_5896687_SNP [dm3] 2L_5896687_SNP [dm6]	G	T	1.852e^-4	0.52	INTERGENIC
3L	9617250	3L_9617250_SNP [dm3] 3L_9624150_SNP [dm6]	T	A	1.856e^-4	0.52	UPSTREAM CG3335 DOWNSTREAM LanB2 INTERGENIC
2R	11498077	2R_11498077_SNP [dm3] 2R_15610572_SNP [dm6]	G	A	1.862e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22071105	3R_22071105_SNP [dm3] 3R_26245383_SNP [dm6]	C	G	1.862e^-4	0.52	INTRON CR42745
3L	4538218	3L_4538218_SNP [dm3] 3L_4538218_SNP [dm6]	G	A	1.863e^-4	0.52	INTRON CG11353	TF binding site BDTNP1_TFBS_twi
X	17158563	X_17158563_SNP [dm3] X_17264530_SNP [dm6]	T	A	1.865e^-4	0.52	UPSTREAM f INTRON f
2R	6950408	2R_6950408_SNP [dm3] 2R_11062903_SNP [dm6]	A	T	1.868e^-4	0.52	INTRON luna
2R	16345707	2R_16345707_SNP [dm3] 2R_20458202_SNP [dm6]	T	A	1.872e^-4	0.52	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	4538332	3L_4538332_SNP [dm3] 3L_4538332_SNP [dm6]	C	T	1.878e^-4	0.52	SYNONYMOUS_CODING CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
2L	3779941	2L_3779941_SNP [dm3] 2L_3779941_SNP [dm6]	A	T	1.878e^-4	0.52	SYNONYMOUS_CODING bowl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17735093	X_17735093_SNP [dm3] X_17841060_SNP [dm6]	T	C	1.880e^-4	0.52	SYNONYMOUS_CODING CG6398
2L	1128486	2L_1128486_SNP [dm3] 2L_1128486_SNP [dm6]	G	T	1.881e^-4	0.52	UPSTREAM CG4552 INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10979972	3L_10979972_INS [dm3] 3L_10986872_INS [dm6]	T	TC	1.888e^-4	0.52	INTRON klu	TF binding site BDTNP1_TFBS_dl
2L	1922848	2L_1922848_SNP [dm3] 2L_1922848_SNP [dm6]	A	G	1.892e^-4	0.52	INTRON CG7337
3R	3319094	3R_3319094_SNP [dm3] 3R_7493372_SNP [dm6]	C	A	1.894e^-4	0.52	UPSTREAM CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10825101	3R_10825101_SNP [dm3] 3R_14999379_SNP [dm6]	T	C	1.894e^-4	0.52	INTERGENIC
3R	22827153	3R_22827153_SNP [dm3] 3R_27001431_SNP [dm6]	A	G	1.904e^-4	0.52	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3L	7449801	3L_7449801_SNP [dm3] 3L_7456701_SNP [dm6]	A	G	1.906e^-4	0.52	SYNONYMOUS_CODING ppk26
X	18621839	X_18621839_SNP [dm3] X_18727806_SNP [dm6]	G	A	1.908e^-4	0.52	INTERGENIC
X	19046956	X_19046956_SNP [dm3] X_19152923_SNP [dm6]	T	G	1.911e^-4	0.52	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
2L	15223820	2L_15223820_SNP [dm3] 2L_15223820_SNP [dm6]	C	G	1.915e^-4	0.52	INTERGENIC
3R	26570347	3R_26570347_SNP [dm3] 3R_30744625_SNP [dm6]	A	T	1.916e^-4	0.52	UTR_3_PRIME Npc2g DOWNSTREAM Npc2g & 2 others	TF binding site mE1_TFBS_cad
3R	26570792	3R_26570792_SNP [dm3] 3R_30745070_SNP [dm6]	G	A	1.916e^-4	0.52	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2L	883335	2L_883335_SNP [dm3] 2L_883335_SNP [dm6]	A	G	1.919e^-4	0.52	INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16640886	X_16640886_SNP [dm3] X_16746853_SNP [dm6]	T	C	1.922e^-4	0.52	UPSTREAM CG9634 INTRON CG9634
3L	7378829	3L_7378829_SNP [dm3] 3L_7385729_SNP [dm6]	T	C	1.923e^-4	0.52	SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad
3L	7378842	3L_7378842_SNP [dm3] 3L_7385742_SNP [dm6]	G	T	1.923e^-4	0.52	NON_SYNONYMOUS_CODING CG8564 DOWNSTREAM smid	TF binding site mE1_TFBS_cad
2R	15526662	2R_15526662_SNP [dm3] 2R_19639157_SNP [dm6]	A	T	1.933e^-4	0.52	INTERGENIC
2L	20932928	2L_20932928_SNP [dm3] 2L_20932928_SNP [dm6]	C	A	1.935e^-4	0.52	SYNONYMOUS_CODING CG9270
3L	9610081	3L_9610081_SNP [dm3] 3L_9616981_SNP [dm6]	G	A	1.937e^-4	0.52	INTRON LanB2	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	1923011	2L_1923011_SNP [dm3] 2L_1923011_SNP [dm6]	A	G	1.940e^-4	0.52	INTRON CG7337
3R	160016	3R_160016_SNP [dm3] 3R_4334294_SNP [dm6]	C	T	1.943e^-4	0.52	UPSTREAM CG9776 & 1 other DOWNSTREAM Skp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	14326464	3L_14326464_SNP [dm3] 3L_14333364_SNP [dm6]	C	G	1.945e^-4	0.52	INTRON fz
3R	13471016	3R_13471016_SNP [dm3] 3R_17645294_SNP [dm6]	C	T	1.946e^-4	0.52	UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	11072024	X_11072024_SNP [dm3] X_11177991_SNP [dm6]	T	A	1.948e^-4	0.52	INTERGENIC
2L	20546332	2L_20546332_SNP [dm3] 2L_20546332_SNP [dm6]	T	G	1.952e^-4	0.52	INTERGENIC
2L	4351768	2L_4351768_SNP [dm3] 2L_4351768_SNP [dm6]	G	T	1.952e^-4	0.52	DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7427677	2L_7427677_SNP [dm3] 2L_7427677_SNP [dm6]	C	G	1.953e^-4	0.52	UPSTREAM CG5261 INTRON CG5261	TF binding site BDTNP1_TFBS_dl
2L	6121812	2L_6121812_SNP [dm3] 2L_6121812_SNP [dm6]	T	C	1.958e^-4	0.52	SYNONYMOUS_CODING stai
3R	13489040	3R_13489040_SNP [dm3] 3R_17663318_SNP [dm6]	C	T	1.960e^-4	0.52	NON_SYNONYMOUS_CODING CG14322
3R	22441451	3R_22441451_SNP [dm3] 3R_26615729_SNP [dm6]	G	T	1.965e^-4	0.52	INTERGENIC
2R	13531317	2R_13531317_SNP [dm3] 2R_17643812_SNP [dm6]	T	A	1.966e^-4	0.52	INTERGENIC
2L	12839295	2L_12839295_INS [dm3] 2L_12839295_INS [dm6]	T	TG	1.968e^-4	0.52	INTERGENIC
2L	12839298	2L_12839298_SNP [dm3] 2L_12839298_SNP [dm6]	A	T	1.968e^-4	0.52	INTERGENIC
2L	12839299	2L_12839299_DEL [dm3] 2L_12839299_DEL [dm6]	AAT	A	1.968e^-4	0.52	INTERGENIC
2L	8448529	2L_8448529_SNP [dm3] 2L_8448529_SNP [dm6]	C	A	1.973e^-4	0.52	SYNONYMOUS_CODING U26
X	5003734	X_5003734_SNP [dm3] X_5109701_SNP [dm6]	A	G	1.981e^-4	0.52	INTRON rg & 1 other
2R	10503625	2R_10503625_SNP [dm3] 2R_14616120_SNP [dm6]	C	T	1.990e^-4	0.52	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA
2R	10503673	2R_10503673_SNP [dm3] 2R_14616168_SNP [dm6]	A	G	1.990e^-4	0.52	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11793825	2L_11793825_SNP [dm3] 2L_11793825_SNP [dm6]	C	G	1.992e^-4	0.52	SYNONYMOUS_CODING CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14667012	X_14667012_SNP [dm3] X_14772979_SNP [dm6]	A	T	1.998e^-4	0.52	INTERGENIC
2L	129720	2L_129720_SNP [dm3] 2L_129720_SNP [dm6]	A	C	2.006e^-4	0.52	UPSTREAM CG3164 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26570686	3R_26570686_SNP [dm3] 3R_30744964_SNP [dm6]	C	T	2.018e^-4	0.52	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
X	18909355	X_18909355_SNP [dm3] X_19015322_SNP [dm6]	G	A	2.023e^-4	0.52	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1917141	2L_1917141_SNP [dm3] 2L_1917141_SNP [dm6]	G	T	2.025e^-4	0.52	INTRON CG7337
X	18622456	X_18622456_SNP [dm3] X_18728423_SNP [dm6]	T	C	2.032e^-4	0.52	INTERGENIC
X	18622710	X_18622710_SNP [dm3] X_18728677_SNP [dm6]	C	T	2.032e^-4	0.52	INTERGENIC
X	18622917	X_18622917_SNP [dm3] X_18728884_SNP [dm6]	G	C	2.032e^-4	0.52	INTERGENIC	TF binding site mE1_TFBS_inv
X	18622938	X_18622938_SNP [dm3] X_18728905_SNP [dm6]	A	T	2.032e^-4	0.52	INTERGENIC	TF binding site mE1_TFBS_inv
X	18622979	X_18622979_SNP [dm3] X_18728946_SNP [dm6]	T	C	2.032e^-4	0.52	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21944082	3R_21944082_SNP [dm3] 3R_26118360_SNP [dm6]	G	C	2.037e^-4	0.52	INTRON CG31324
3L	5906249	3L_5906249_SNP [dm3] 3L_5913149_SNP [dm6]	A	T	2.037e^-4	0.52	INTRON CG13288
2L	6501646	2L_6501646_SNP [dm3] 2L_6501646_SNP [dm6]	T	C	2.038e^-4	0.52	INTRON CG31637	TF binding site mE1_TFBS_sens
2R	13257566	2R_13257566_SNP [dm3] 2R_17370061_SNP [dm6]	C	G	2.038e^-4	0.52	INTRON mbl
3L	14534920	3L_14534920_SNP [dm3] 3L_14541820_SNP [dm6]	A	C	2.040e^-4	0.52	UTR_3_PRIME CG9238
3R	27507642	3R_27507642_SNP [dm3] 3R_31681920_SNP [dm6]	C	G	2.050e^-4	0.52	UPSTREAM CR44091 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15349723	2R_15349723_SNP [dm3] 2R_19462218_SNP [dm6]	A	T	2.050e^-4	0.52	UPSTREAM par-1 INTRON par-1	TF binding site mE1_TFBS_Trl
2L	6774898	2L_6774898_SNP [dm3] 2L_6774898_SNP [dm6]	A	C	2.051e^-4	0.52	UPSTREAM CG17378 INTRON CG17378
2L	6774900	2L_6774900_SNP [dm3] 2L_6774900_SNP [dm6]	C	G	2.051e^-4	0.52	UPSTREAM CG17378 INTRON CG17378
2R	18695978	2R_18695978_SNP [dm3] 2R_22808473_SNP [dm6]	C	A	2.052e^-4	0.52	UTR_5_PRIME stl
3R	13486413	3R_13486413_SNP [dm3] 3R_17660691_SNP [dm6]	T	C	2.053e^-4	0.52	INTRON CG14322
3L	11529210	3L_11529210_DEL [dm3] 3L_11536110_DEL [dm6]	CC	C	2.055e^-4	0.52	INTRON Mob2	TF binding site mE1_TFBS_HSA
3R	26976498	3R_26976498_SNP [dm3] 3R_31150776_SNP [dm6]	C	T	2.056e^-4	0.52	INTRON Gycbeta100B
3R	13481367	3R_13481367_SNP [dm3] 3R_17655645_SNP [dm6]	A	G	2.057e^-4	0.52	INTRON CG14322
3L	124281	3L_124281_SNP [dm3] 3L_124281_SNP [dm6]	A	G	2.061e^-4	0.52	DOWNSTREAM CR45401 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18697169	2R_18697169_SNP [dm3] 2R_22809664_SNP [dm6]	A	G	2.065e^-4	0.52	INTRON stl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13589050	2R_13589050_SNP [dm3] 2R_17701545_SNP [dm6]	T	C	2.065e^-4	0.52	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	1428157	2R_1428157_SNP [dm3] 2R_5540652_SNP [dm6]	A	T	2.071e^-4	0.52	INTRON CG30438
2R	18486449	2R_18486449_SNP [dm3] 2R_22598944_SNP [dm6]	T	A	2.072e^-4	0.52	UPSTREAM CG4269 INTRON CG4269
3R	19339906	3R_19339906_SNP [dm3] 3R_23514184_SNP [dm6]	A	T	2.072e^-4	0.52	INTRON Irk2
2R	8527746	2R_8527746_SNP [dm3] 2R_12640241_SNP [dm6]	G	A	2.080e^-4	0.52	SYNONYMOUS_CODING Iswi DOWNSTREAM CG8785	TF binding site mE1_TFBS_cad
X	15634701	X_15634701_INS [dm3] X_15740668_INS [dm6]	A	TGG	2.080e^-4	0.52	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
3R	19346652	3R_19346652_SNP [dm3] 3R_23520930_SNP [dm6]	T	C	2.081e^-4	0.52	NON_SYNONYMOUS_CODING CG10177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23657547	3R_23657547_SNP [dm3] 3R_27831825_SNP [dm6]	G	A	2.081e^-4	0.52	INTRON CG34353
X	18341873	X_18341873_SNP [dm3] X_18447840_SNP [dm6]	G	A	2.083e^-4	0.52	INTRON CG32547
2R	18486447	2R_18486447_SNP [dm3] 2R_22598942_SNP [dm6]	G	A	2.087e^-4	0.52	UPSTREAM CG4269 INTRON CG4269
3R	21925505	3R_21925505_SNP [dm3] 3R_26099783_SNP [dm6]	C	T	2.089e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10245739	2R_10245739_SNP [dm3] 2R_14358234_SNP [dm6]	T	C	2.089e^-4	0.52	UTR_3_PRIME Arc1 UPSTREAM CG8617	TF binding site mE1_TFBS_chinmo
X	5523275	X_5523275_SNP [dm3] X_5629242_SNP [dm6]	G	A	2.089e^-4	0.52	UTR_3_PRIME CG42492 INTRON CG42492
2L	19755308	2L_19755308_SNP [dm3] 2L_19755308_SNP [dm6]	T	C	2.093e^-4	0.52	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9596957	2L_9596957_SNP [dm3] 2L_9596957_SNP [dm6]	T	A	2.093e^-4	0.52	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	9047457	2R_9047457_SNP [dm3] 2R_13159952_SNP [dm6]	T	C	2.100e^-4	0.521	UTR_3_PRIME CG34439 UPSTREAM Nrk & 1 other DOWNSTREAM CG34439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1922930	2L_1922930_SNP [dm3] 2L_1922930_SNP [dm6]	T	C	2.106e^-4	0.521	INTRON CG7337
X	14293425	X_14293425_SNP [dm3] X_14399392_SNP [dm6]	A	T	2.108e^-4	0.521	INTRON dpr8
2L	12776026	2L_12776026_SNP [dm3] 2L_12776026_SNP [dm6]	A	T	2.108e^-4	0.521	INTERGENIC
3R	21729406	3R_21729406_SNP [dm3] 3R_25903684_SNP [dm6]	A	T	2.114e^-4	0.521	INTRON CR43259 & 1 other
2L	1633631	2L_1633631_INS [dm3] 2L_1633631_INS [dm6]	A	AT	2.115e^-4	0.521	INTERGENIC
3L	7515028	3L_7515028_SNP [dm3] 3L_7521928_SNP [dm6]	T	C	2.120e^-4	0.522	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22159388	3R_22159388_SNP [dm3] 3R_26333666_SNP [dm6]	C	T	2.134e^-4	0.522	INTRON CG33970
3R	20842801	3R_20842801_SNP [dm3] 3R_25017079_SNP [dm6]	G	C	2.136e^-4	0.522	NON_SYNONYMOUS_CODING tnc
3R	23168264	3R_23168264_SNP [dm3] 3R_27342542_SNP [dm6]	A	T	2.140e^-4	0.522	INTRON CG42534
3R	21989879	3R_21989879_SNP [dm3] 3R_26164157_SNP [dm6]	A	C	2.140e^-4	0.522	INTERGENIC
3R	21745230	3R_21745230_SNP [dm3] 3R_25919508_SNP [dm6]	G	A	2.144e^-4	0.522	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3016396	2L_3016396_SNP [dm3] 2L_3016396_SNP [dm6]	C	A	2.149e^-4	0.522	DOWNSTREAM CG17224 & 1 other INTERGENIC
2L	5239391	2L_5239391_SNP [dm3] 2L_5239391_SNP [dm6]	A	T	2.150e^-4	0.522	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
X	18909459	X_18909459_SNP [dm3] X_19015426_SNP [dm6]	C	G	2.152e^-4	0.522	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20222932	3R_20222932_SNP [dm3] 3R_24397210_SNP [dm6]	T	C	2.155e^-4	0.522	UTR_3_PRIME nAChRalpha1
2L	20535276	2L_20535276_SNP [dm3] 2L_20535276_SNP [dm6]	T	A	2.155e^-4	0.522	INTERGENIC
2L	4622984	2L_4622984_SNP [dm3] 2L_4622984_SNP [dm6]	C	T	2.156e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7438418	2R_7438418_SNP [dm3] 2R_11550913_SNP [dm6]	A	G	2.158e^-4	0.522	INTERGENIC
3R	16509812	3R_16509812_SNP [dm3] 3R_20684090_SNP [dm6]	T	C	2.159e^-4	0.522	INTERGENIC
2R	6152709	2R_6152709_SNP [dm3] 2R_10265204_SNP [dm6]	T	C	2.165e^-4	0.523	SYNONYMOUS_CODING CG12910 UPSTREAM CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5304129	2R_5304129_SNP [dm3] 2R_9416624_SNP [dm6]	C	T	2.169e^-4	0.523	START_GAINED wun2 UTR_5_PRIME wun2 INTRON wun2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7940426	2L_7940426_SNP [dm3] 2L_7940426_SNP [dm6]	A	G	2.170e^-4	0.523	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
X	8284362	X_8284362_SNP [dm3] X_8390329_SNP [dm6]	A	G	2.175e^-4	0.523	DOWNSTREAM CG1387 INTERGENIC
3L	18069126	3L_18069126_SNP [dm3] 3L_18076026_SNP [dm6]	G	A	2.186e^-4	0.524	UPSTREAM CR45391 INTERGENIC
2L	115359	2L_115359_SNP [dm3] 2L_115359_SNP [dm6]	A	G	2.188e^-4	0.524	DOWNSTREAM CG13694 & 1 other INTRON CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18908195	X_18908195_INS [dm3] X_19014162_INS [dm6]	A	ACATATATACCACA...	2.194e^-4	0.524	INTRON CG43759
3R	21923086	3R_21923086_SNP [dm3] 3R_26097364_SNP [dm6]	C	T	2.198e^-4	0.524	INTRON dys	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	13906362	2R_13906362_SNP [dm3] 2R_18018857_SNP [dm6]	A	G	2.200e^-4	0.524	INTRON CG5084
2L	16301248	2L_16301248_SNP [dm3] 2L_16301248_SNP [dm6]	T	C	2.208e^-4	0.524	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869	TF binding site mE1_TFBS_sens
3R	26980228	3R_26980228_INS [dm3] 3R_31154506_INS [dm6]	A	ACAA	2.217e^-4	0.524	INTRON Gycbeta100B
3R	10840392	3R_10840392_SNP [dm3] 3R_15014670_SNP [dm6]	C	A	2.217e^-4	0.524	UPSTREAM CG14861 INTERGENIC
3L	15787865	3L_15787865_SNP [dm3] 3L_15794765_SNP [dm6]	G	T	2.219e^-4	0.524	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21926253	3R_21926253_SNP [dm3] 3R_26100531_SNP [dm6]	A	G	2.220e^-4	0.524	INTERGENIC	regulatory region REDfly_CRMs
2L	9990318	2L_9990318_SNP [dm3] 2L_9990318_SNP [dm6]	G	T	2.220e^-4	0.524	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	1247881	2R_1247881_DEL [dm3] 2R_5360376_DEL [dm6]	TTTACGAGA	G	2.221e^-4	0.524	UTR_3_PRIME CG10417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25797040	3R_25797040_SNP [dm3] 3R_29971318_SNP [dm6]	T	C	2.221e^-4	0.524	INTERGENIC
X	14610861	X_14610861_SNP [dm3] X_14716828_SNP [dm6]	G	C	2.227e^-4	0.524	INTRON NetB
3R	22733949	3R_22733949_DEL [dm3] 3R_26908227_DEL [dm6]	AGA	A	2.227e^-4	0.524	INTRON T48
3L	15835088	3L_15835088_SNP [dm3] 3L_15841988_SNP [dm6]	C	A	2.239e^-4	0.524	INTRON CG32150
3R	21944081	3R_21944081_SNP [dm3] 3R_26118359_SNP [dm6]	A	G	2.241e^-4	0.524	INTRON CG31324
3R	21945165	3R_21945165_SNP [dm3] 3R_26119443_SNP [dm6]	A	G	2.246e^-4	0.524	INTRON CG31324
2R	17678309	2R_17678309_SNP [dm3] 2R_21790804_SNP [dm6]	G	A	2.247e^-4	0.524	SYNONYMOUS_CODING lox2
X	19047241	X_19047241_INS [dm3] X_19153208_INS [dm6]	G	GTTG	2.250e^-4	0.524	CODON_INSERTION RhoGAP18B INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D
3R	19240199	3R_19240199_SNP [dm3] 3R_23414477_SNP [dm6]	G	A	2.251e^-4	0.524	INTRON CG4374
3R	26177869	3R_26177869_SNP [dm3] 3R_30352147_SNP [dm6]	A	C	2.256e^-4	0.524	INTRON hdc
3R	26177870	3R_26177870_SNP [dm3] 3R_30352148_SNP [dm6]	C	T	2.256e^-4	0.524	INTRON hdc
3L	14335462	3L_14335462_SNP [dm3] 3L_14342362_SNP [dm6]	T	G	2.256e^-4	0.524	INTRON fz
3L	9781461	3L_9781461_SNP [dm3] 3L_9788361_SNP [dm6]	A	C	2.258e^-4	0.524	UTR_3_PRIME Zasp67
3R	5122670	3R_5122670_SNP [dm3] 3R_9296948_SNP [dm6]	G	A	2.259e^-4	0.524	INTRON CG8861
2R	3422950	2R_3422950_SNP [dm3] 2R_7535445_SNP [dm6]	C	T	2.260e^-4	0.524	SYNONYMOUS_CODING Cyt-b5 UPSTREAM CG2137
3R	23646774	3R_23646774_SNP [dm3] 3R_27821052_SNP [dm6]	A	C	2.260e^-4	0.524	INTRON CG34353
X	11730026	X_11730026_SNP [dm3] X_11835993_SNP [dm6]	G	C	2.262e^-4	0.524	UTR_3_PRIME rudhira DOWNSTREAM rudhira
3L	5864655	3L_5864655_SNP [dm3] 3L_5871555_SNP [dm6]	T	G	2.265e^-4	0.524	UTR_5_PRIME CG5568
3R	5712550	3R_5712550_SNP [dm3] 3R_9886828_SNP [dm6]	A	G	2.270e^-4	0.524	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23182231	3R_23182231_SNP [dm3] 3R_27356509_SNP [dm6]	C	T	2.271e^-4	0.524	INTRON CG42534
2L	11295413	2L_11295413_SNP [dm3] 2L_11295413_SNP [dm6]	C	A	2.271e^-4	0.524	INTERGENIC
3R	23646763	3R_23646763_SNP [dm3] 3R_27821041_SNP [dm6]	G	T	2.276e^-4	0.524	INTRON CG34353
3R	23646779	3R_23646779_SNP [dm3] 3R_27821057_SNP [dm6]	A	G	2.276e^-4	0.524	INTRON CG34353
2L	12839310	2L_12839310_SNP [dm3] 2L_12839310_SNP [dm6]	G	T	2.278e^-4	0.524	INTERGENIC
2R	10244971	2R_10244971_SNP [dm3] 2R_14357466_SNP [dm6]	C	G	2.282e^-4	0.524	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	6097381	3L_6097381_SNP [dm3] 3L_6104281_SNP [dm6]	A	G	2.290e^-4	0.525	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4041050	2L_4041050_SNP [dm3] 2L_4041050_SNP [dm6]	T	G	2.293e^-4	0.525	INTRON ed
3R	26576989	3R_26576989_SNP [dm3] 3R_30751267_SNP [dm6]	G	A	2.295e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3216819	2L_3216819_SNP [dm3] 2L_3216819_SNP [dm6]	A	G	2.298e^-4	0.525	INTERGENIC
2L	13520830	2L_13520830_SNP [dm3] 2L_13520830_SNP [dm6]	T	A	2.300e^-4	0.525	INTRON B4
X	13223378	X_13223378_SNP [dm3] X_13329345_SNP [dm6]	G	C	2.311e^-4	0.525	UPSTREAM Jafrac1 DOWNSTREAM IP3K2 INTERGENIC
3L	15835074	3L_15835074_SNP [dm3] 3L_15841974_SNP [dm6]	A	T	2.314e^-4	0.525	INTRON CG32150
2L	768079	2L_768079_SNP [dm3] 2L_768079_SNP [dm6]	T	C	2.315e^-4	0.525	INTERGENIC
X	8647407	X_8647407_SNP [dm3] X_8753374_SNP [dm6]	G	A	2.323e^-4	0.525	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8902220	3L_8902220_SNP [dm3] 3L_8909120_SNP [dm6]	C	T	2.323e^-4	0.525	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr	TF binding site mE1_TFBS_sens
3R	24451708	3R_24451708_SNP [dm3] 3R_28625986_SNP [dm6]	T	C	2.328e^-4	0.525	INTRON CG10011
3R	20842851	3R_20842851_SNP [dm3] 3R_25017129_SNP [dm6]	T	C	2.333e^-4	0.525	NON_SYNONYMOUS_CODING tnc
3L	2490389	3L_2490389_SNP [dm3] 3L_2490389_SNP [dm6]	G	C	2.345e^-4	0.525	UTR_5_PRIME CG1146 UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13497514	3R_13497514_INS [dm3] 3R_17671792_INS [dm6]	T	TT	2.345e^-4	0.525	UPSTREAM CG7523 INTRON ald	TF binding site mE1_TFBS_sens
X	6789532	X_6789532_SNP [dm3] X_6895499_SNP [dm6]	A	G	2.346e^-4	0.525	INTERGENIC
2R	17367919	2R_17367919_DEL [dm3] 2R_21480414_DEL [dm6]	CAC	C	2.362e^-4	0.525	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	10013808	2R_10013808_SNP [dm3] 2R_14126303_SNP [dm6]	A	T	2.367e^-4	0.525	INTRON Prosap
X	5899362	X_5899362_SNP [dm3] X_6005329_SNP [dm6]	G	A	2.367e^-4	0.525	EXON CR44498	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6268152	X_6268152_SNP [dm3] X_6374119_SNP [dm6]	T	A	2.370e^-4	0.525	INTERGENIC
2L	7916068	2L_7916068_DEL [dm3] 2L_7916068_DEL [dm6]	GCATGGCG	G	2.370e^-4	0.525	INTRON Snoo
2L	19129671	2L_19129671_SNP [dm3] 2L_19129671_SNP [dm6]	G	T	2.371e^-4	0.525	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
2R	6918562	2R_6918562_INS [dm3] 2R_11031057_INS [dm6]	T	TT	2.378e^-4	0.525	INTRON luna
3L	10028729	3L_10028729_SNP [dm3] 3L_10035629_SNP [dm6]	C	A	2.380e^-4	0.525	INTRON dpr6
2L	7940420	2L_7940420_SNP [dm3] 2L_7940420_SNP [dm6]	G	A	2.395e^-4	0.525	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2L	11399616	2L_11399616_SNP [dm3] 2L_11399616_SNP [dm6]	C	G	2.395e^-4	0.525	INTERGENIC	regulatory region REDfly_CRMs
2L	20503522	2L_20503522_SNP [dm3] 2L_20503522_SNP [dm6]	C	T	2.403e^-4	0.525	INTERGENIC
2L	20862647	2L_20862647_MNP [dm3] 2L_20862647_MNP [dm6]	ATT	GGG	2.406e^-4	0.525	EXON CR9337
2L	20862652	2L_20862652_SNP [dm3] 2L_20862652_SNP [dm6]	A	T	2.406e^-4	0.525	EXON CR9337
3R	19272589	3R_19272589_SNP [dm3] 3R_23446867_SNP [dm6]	A	G	2.407e^-4	0.525	INTRON CG4374
X	13737216	X_13737216_SNP [dm3] X_13843183_SNP [dm6]	T	A	2.410e^-4	0.525	INTRON AMPdeam	TF binding site mE1_TFBS_HSA
3L	9985602	3L_9985602_SNP [dm3] 3L_9992502_SNP [dm6]	G	T	2.413e^-4	0.525	INTRON dpr6
2L	879928	2L_879928_SNP [dm3] 2L_879928_SNP [dm6]	A	T	2.414e^-4	0.525	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2L	109167	2L_109167_DEL [dm3] 2L_109167_DEL [dm6]	CCCGGTGACCAAG...	C	2.419e^-4	0.525	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7246186	2L_7246186_SNP [dm3] 2L_7246186_SNP [dm6]	A	G	2.420e^-4	0.525	UPSTREAM Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1922480	2L_1922480_SNP [dm3] 2L_1922480_SNP [dm6]	A	T	2.421e^-4	0.525	INTRON CG7337
X	9686951	X_9686951_SNP [dm3] X_9792918_SNP [dm6]	A	T	2.426e^-4	0.525	INTRON CG32698
3R	9926107	3R_9926107_SNP [dm3] 3R_14100385_SNP [dm6]	G	A	2.429e^-4	0.525	UTR_3_PRIME PK1-R DOWNSTREAM PK1-R	TF binding site mE1_TFBS_Trl
3R	26185553	3R_26185553_INS [dm3] 3R_30359831_INS [dm6]	T	TT	2.429e^-4	0.525	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	14335302	3L_14335302_SNP [dm3] 3L_14342202_SNP [dm6]	G	A	2.434e^-4	0.525	INTRON fz
2R	6152723	2R_6152723_SNP [dm3] 2R_10265218_SNP [dm6]	T	A	2.438e^-4	0.525	NON_SYNONYMOUS_CODING CG12910 UPSTREAM CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15835003	2R_15835003_SNP [dm3] 2R_19947498_SNP [dm6]	A	G	2.444e^-4	0.525	NON_SYNONYMOUS_CODING CG30447 UPSTREAM CG42691
2R	18241905	2R_18241905_SNP [dm3] 2R_22354400_SNP [dm6]	C	G	2.445e^-4	0.525	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
2L	9425970	2L_9425970_SNP [dm3] 2L_9425970_SNP [dm6]	C	T	2.460e^-4	0.525	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2L	127805	2L_127805_SNP [dm3] 2L_127805_SNP [dm6]	A	T	2.460e^-4	0.525	INTRON CG11455 & 1 other
2R	10013792	2R_10013792_SNP [dm3] 2R_14126287_SNP [dm6]	C	T	2.462e^-4	0.525	INTRON Prosap
X	15502490	X_15502490_SNP [dm3] X_15608457_SNP [dm6]	T	A	2.471e^-4	0.525	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4022951	X_4022951_SNP [dm3] X_4128918_SNP [dm6]	T	A	2.472e^-4	0.525	UTR_3_PRIME tyf
2L	117109	2L_117109_SNP [dm3] 2L_117109_SNP [dm6]	T	A	2.473e^-4	0.525	UTR_3_PRIME CG4822 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455
X	21804791	X_21804791_SNP [dm3] X_22402956_SNP [dm6]	T	C	2.475e^-4	0.525	INTERGENIC	transposable element FlyBase
2L	13336163	2L_13336163_SNP [dm3] 2L_13336163_SNP [dm6]	C	A	2.477e^-4	0.525	INTERGENIC
3R	13470566	3R_13470566_SNP [dm3] 3R_17644844_SNP [dm6]	T	C	2.484e^-4	0.525	SYNONYMOUS_CODING CG43175 UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568	TF binding site mE1_TFBS_cad
2L	2610816	2L_2610816_SNP [dm3] 2L_2610816_SNP [dm6]	A	T	2.494e^-4	0.525	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	25149160	3R_25149160_SNP [dm3] 3R_29323438_SNP [dm6]	G	A	2.495e^-4	0.525	INTERGENIC
2L	108968	2L_108968_SNP [dm3] 2L_108968_SNP [dm6]	C	A	2.497e^-4	0.525	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	109015	2L_109015_SNP [dm3] 2L_109015_SNP [dm6]	A	T	2.497e^-4	0.525	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	109048	2L_109048_SNP [dm3] 2L_109048_SNP [dm6]	C	T	2.497e^-4	0.525	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	112636	2L_112636_SNP [dm3] 2L_112636_SNP [dm6]	G	T	2.497e^-4	0.525	INTRON Sam-S
2L	113831	2L_113831_SNP [dm3] 2L_113831_SNP [dm6]	A	T	2.497e^-4	0.525	UTR_3_PRIME Sam-S UPSTREAM CG11455
2L	114738	2L_114738_SNP [dm3] 2L_114738_SNP [dm6]	G	T	2.497e^-4	0.525	START_GAINED CG11455 UTR_5_PRIME CG11455 DOWNSTREAM Sam-S & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	118851	2L_118851_SNP [dm3] 2L_118851_SNP [dm6]	G	A	2.497e^-4	0.525	NON_SYNONYMOUS_CODING CG4822 UTR_3_PRIME CG4822 INTRON CG11455	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	121830	2L_121830_SNP [dm3] 2L_121830_SNP [dm6]	G	A	2.497e^-4	0.525	UPSTREAM CG4822 DOWNSTREAM CG3164 INTRON CG11455
2L	127299	2L_127299_SNP [dm3] 2L_127299_SNP [dm6]	C	A	2.497e^-4	0.525	INTRON CG11455 & 1 other
2L	130303	2L_130303_SNP [dm3] 2L_130303_SNP [dm6]	G	T	2.497e^-4	0.525	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_Trl
2L	132420	2L_132420_SNP [dm3] 2L_132420_SNP [dm6]	C	G	2.497e^-4	0.525	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	135084	2L_135084_SNP [dm3] 2L_135084_SNP [dm6]	T	A	2.497e^-4	0.525	UPSTREAM CR44185 DOWNSTREAM Gs1 INTRON CG11455
2L	144125	2L_144125_SNP [dm3] 2L_144125_SNP [dm6]	C	G	2.497e^-4	0.525	UTR_3_PRIME CG11454 DOWNSTREAM CG42399 INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	157017	2L_157017_SNP [dm3] 2L_157017_SNP [dm6]	C	G	2.497e^-4	0.525	NON_SYNONYMOUS_CODING CG3436 DOWNSTREAM CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	158488	2L_158488_SNP [dm3] 2L_158488_SNP [dm6]	T	C	2.497e^-4	0.525	NON_SYNONYMOUS_CODING CG33635 UPSTREAM spen DOWNSTREAM CG3436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	158812	2L_158812_SNP [dm3] 2L_158812_SNP [dm6]	T	A	2.497e^-4	0.525	UPSTREAM spen & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	164734	2L_164734_SNP [dm3] 2L_164734_SNP [dm6]	G	A	2.497e^-4	0.525	INTRON spen
2L	203925	2L_203925_SNP [dm3] 2L_203925_SNP [dm6]	G	A	2.497e^-4	0.525	DOWNSTREAM spen & 1 other INTRON mRpL10	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13585127	2L_13585127_INS [dm3] 2L_13585127_INS [dm6]	A	AA	2.499e^-4	0.525	INTRON kuz
3R	1815111	3R_1815111_DEL [dm3] 3R_5989389_DEL [dm6]	CCCAGACCCTCTGCAAAATG...	C	2.501e^-4	0.525	EXON CR44927	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19420136	3R_19420136_SNP [dm3] 3R_23594414_SNP [dm6]	G	A	2.502e^-4	0.525	INTRON CG16723
3R	19424305	3R_19424305_SNP [dm3] 3R_23598583_SNP [dm6]	C	T	2.502e^-4	0.525	NON_SYNONYMOUS_CODING CG10183
3R	19426190	3R_19426190_SNP [dm3] 3R_23600468_SNP [dm6]	C	G	2.502e^-4	0.525	DOWNSTREAM tRNA:CR31143 INTERGENIC
3R	19430628	3R_19430628_SNP [dm3] 3R_23604906_SNP [dm6]	G	C	2.502e^-4	0.525	NON_SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13489095	3R_13489095_SNP [dm3] 3R_17663373_SNP [dm6]	A	G	2.508e^-4	0.526	SYNONYMOUS_CODING CG14322
3R	24655197	3R_24655197_SNP [dm3] 3R_28829475_SNP [dm6]	A	G	2.516e^-4	0.526	INTRON WASp
2R	18696660	2R_18696660_SNP [dm3] 2R_22809155_SNP [dm6]	G	T	2.524e^-4	0.526	INTRON stl
3R	21968829	3R_21968829_SNP [dm3] 3R_26143107_SNP [dm6]	A	T	2.525e^-4	0.526	INTERGENIC
3L	17333256	3L_17333256_SNP [dm3] 3L_17340156_SNP [dm6]	T	A	2.529e^-4	0.526	UPSTREAM CG6479 & 1 other DOWNSTREAM CG13727 INTERGENIC
3R	12360690	3R_12360690_SNP [dm3] 3R_16534968_SNP [dm6]	A	G	2.529e^-4	0.526	INTRON CG42342
2R	9047509	2R_9047509_SNP [dm3] 2R_13160004_SNP [dm6]	G	A	2.530e^-4	0.526	UTR_3_PRIME CG34439 UPSTREAM Nrk & 1 other DOWNSTREAM CG34439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15409331	2R_15409331_SNP [dm3] 2R_19521826_SNP [dm6]	C	T	2.548e^-4	0.526	UTR_3_PRIME sm
2R	8558110	2R_8558110_SNP [dm3] 2R_12670605_SNP [dm6]	T	G	2.549e^-4	0.526	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	8047993	2L_8047993_SNP [dm3] 2L_8047993_SNP [dm6]	G	A	2.560e^-4	0.526	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	8047996	2L_8047996_SNP [dm3] 2L_8047996_SNP [dm6]	A	G	2.560e^-4	0.526	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2R	8712545	2R_8712545_SNP [dm3] 2R_12825040_SNP [dm6]	A	T	2.563e^-4	0.526	INTERGENIC
2R	8945126	2R_8945126_SNP [dm3] 2R_13057621_SNP [dm6]	T	C	2.564e^-4	0.526	UTR_3_PRIME Drl-2
2R	4525126	2R_4525126_SNP [dm3] 2R_8637621_SNP [dm6]	G	A	2.566e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7122941	2L_7122941_DEL [dm3] 2L_7122941_DEL [dm6]	CCC	C	2.567e^-4	0.526	INTRON Pvf3
2L	20862642	2L_20862642_DEL [dm3] 2L_20862642_DEL [dm6]	AAT	A	2.568e^-4	0.526	EXON CR9337
X	13421682	X_13421682_SNP [dm3] X_13527649_SNP [dm6]	G	T	2.573e^-4	0.526	UPSTREAM CG15754 DOWNSTREAM Neto INTERGENIC
X	4254418	X_4254418_SNP [dm3] X_4360385_SNP [dm6]	T	C	2.574e^-4	0.526	INTRON norpA	TF binding site BDTNP1_TFBS_dl
2L	20862653	2L_20862653_SNP [dm3] 2L_20862653_SNP [dm6]	T	A	2.575e^-4	0.526	EXON CR9337
2L	20862626	2L_20862626_DEL [dm3] 2L_20862626_DEL [dm6]	TGC	T	2.580e^-4	0.526	EXON CR9337
2L	20862630	2L_20862630_DEL [dm3] 2L_20862630_DEL [dm6]	GA	G	2.580e^-4	0.526	EXON CR9337
2L	20862634	2L_20862634_DEL [dm3] 2L_20862634_DEL [dm6]	ATT	A	2.580e^-4	0.526	EXON CR9337
2L	14208223	2L_14208223_SNP [dm3] 2L_14208223_SNP [dm6]	T	C	2.590e^-4	0.526	INTRON Dyrk2
2R	14955028	2R_14955028_SNP [dm3] 2R_19067523_SNP [dm6]	A	C	2.593e^-4	0.526	UTR_5_PRIME 5-HT1A
3L	9791318	3L_9791318_SNP [dm3] 3L_9798218_SNP [dm6]	G	A	2.610e^-4	0.526	UPSTREAM Ilp1 & 2 others INTERGENIC
2L	14589406	2L_14589406_SNP [dm3] 2L_14589406_SNP [dm6]	C	T	2.612e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14589414	2L_14589414_INS [dm3] 2L_14589414_INS [dm6]	T	TCTAAT	2.612e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6901699	X_6901699_DEL [dm3] X_7007666_DEL [dm6]	AA	A	2.615e^-4	0.526	INTRON Inx7
2L	3021449	2L_3021449_DEL [dm3] 2L_3021449_DEL [dm6]	TT	T	2.616e^-4	0.526	UTR_3_PRIME CG17264 & 1 other
2L	11204210	2L_11204210_SNP [dm3] 2L_11204210_SNP [dm6]	A	G	2.617e^-4	0.526	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23340472	3R_23340472_SNP [dm3] 3R_27514750_SNP [dm6]	T	C	2.619e^-4	0.526	INTERGENIC
2L	14616790	2L_14616790_SNP [dm3] 2L_14616790_SNP [dm6]	C	T	2.620e^-4	0.526	SYNONYMOUS_CODING Adh UTR_5_PRIME Adhr UPSTREAM Adhr INTRON osp	TF binding site mE1_TFBS_cad
X	20369135	X_20369135_SNP [dm3] X_20498108_SNP [dm6]	A	G	2.626e^-4	0.526	INTRON RhoGAP19D
2R	10013858	2R_10013858_SNP [dm3] 2R_14126353_SNP [dm6]	G	A	2.628e^-4	0.526	INTRON Prosap
2R	10013881	2R_10013881_SNP [dm3] 2R_14126376_SNP [dm6]	C	T	2.628e^-4	0.526	INTRON Prosap
2R	15268749	2R_15268749_INS [dm3] 2R_19381244_INS [dm6]	T	ATTAA	2.629e^-4	0.526	UPSTREAM CG10073 INTRON CG10073
3L	5864609	3L_5864609_SNP [dm3] 3L_5871509_SNP [dm6]	A	T	2.631e^-4	0.526	UTR_5_PRIME CG5568
2R	11509861	2R_11509861_SNP [dm3] 2R_15622356_SNP [dm6]	T	C	2.638e^-4	0.526	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7940413	2L_7940413_SNP [dm3] 2L_7940413_SNP [dm6]	G	A	2.643e^-4	0.526	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
X	17735054	X_17735054_SNP [dm3] X_17841021_SNP [dm6]	T	C	2.644e^-4	0.526	SYNONYMOUS_CODING CG6398
X	13421676	X_13421676_INS [dm3] X_13527643_INS [dm6]	A	ACTCAAAAGAATTGATTCAT...	2.645e^-4	0.526	UPSTREAM CG15754 DOWNSTREAM Neto INTERGENIC
2R	13906462	2R_13906462_SNP [dm3] 2R_18018957_SNP [dm6]	T	C	2.646e^-4	0.526	INTRON CG5084
3R	7103399	3R_7103399_SNP [dm3] 3R_11277677_SNP [dm6]	C	G	2.652e^-4	0.526	EXON CR31386
3R	12360767	3R_12360767_SNP [dm3] 3R_16535045_SNP [dm6]	G	C	2.656e^-4	0.526	INTRON CG42342
3L	9251371	3L_9251371_SNP [dm3] 3L_9258271_SNP [dm6]	G	A	2.656e^-4	0.526	INTRON GluRIB
2R	2981609	2R_2981609_SNP [dm3] 2R_7094104_SNP [dm6]	G	A	2.658e^-4	0.526	INTRON esn
2L	18081484	2L_18081484_SNP [dm3] 2L_18081484_SNP [dm6]	T	C	2.665e^-4	0.526	UPSTREAM ninaD DOWNSTREAM Arr1 INTERGENIC
3R	18837487	3R_18837487_SNP [dm3] 3R_23011765_SNP [dm6]	T	A	2.668e^-4	0.526	UPSTREAM CG6688 DOWNSTREAM CR44225 INTERGENIC
2L	7122930	2L_7122930_SNP [dm3] 2L_7122930_SNP [dm6]	G	A	2.669e^-4	0.526	INTRON Pvf3
2L	21068162	2L_21068162_SNP [dm3] 2L_21068162_SNP [dm6]	G	A	2.671e^-4	0.526	INTRON CG9265
3R	18652973	3R_18652973_SNP [dm3] 3R_22827251_SNP [dm6]	C	G	2.672e^-4	0.526	EXON CR44350
3R	23247019	3R_23247019_SNP [dm3] 3R_27421297_SNP [dm6]	T	A	2.678e^-4	0.526	INTRON side
3L	7572134	3L_7572134_SNP [dm3] 3L_7579034_SNP [dm6]	G	A	2.679e^-4	0.526	INTERGENIC
3R	21728902	3R_21728902_SNP [dm3] 3R_25903180_SNP [dm6]	T	C	2.681e^-4	0.526	SYNONYMOUS_CODING CG31089 EXON CR43259
3R	4054974	3R_4054974_SNP [dm3] 3R_8229252_SNP [dm6]	C	T	2.685e^-4	0.526	EXON CR45551 & 1 other	TF binding site mE1_TFBS_sbb
2L	20862569	2L_20862569_SNP [dm3] 2L_20862569_SNP [dm6]	C	T	2.692e^-4	0.526	EXON CR9337
3L	12210384	3L_12210384_SNP [dm3] 3L_12217284_SNP [dm6]	G	A	2.694e^-4	0.526	INTRON app
3R	22072386	3R_22072386_SNP [dm3] 3R_26246664_SNP [dm6]	A	T	2.701e^-4	0.526	INTRON CR42745
3R	26568995	3R_26568995_SNP [dm3] 3R_30743273_SNP [dm6]	C	T	2.703e^-4	0.526	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26569037	3R_26569037_SNP [dm3] 3R_30743315_SNP [dm6]	T	C	2.703e^-4	0.526	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8556551	2R_8556551_SNP [dm3] 2R_12669046_SNP [dm6]	G	A	2.712e^-4	0.526	INTRON nemy
3R	10074007	3R_10074007_SNP [dm3] 3R_14248285_SNP [dm6]	A	C	2.712e^-4	0.526	INTERGENIC
3R	22792249	3R_22792249_SNP [dm3] 3R_26966527_SNP [dm6]	T	C	2.712e^-4	0.526	UPSTREAM CG5521 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20862622	2L_20862622_SNP [dm3] 2L_20862622_SNP [dm6]	T	A	2.716e^-4	0.526	EXON CR9337
3R	18808937	3R_18808937_DEL [dm3] 3R_22983215_DEL [dm6]	TATGTTTTCTAAA...	CC	2.717e^-4	0.526	INTRON Nha2
2R	6555821	2R_6555821_SNP [dm3] 2R_10668316_SNP [dm6]	G	A	2.720e^-4	0.526	INTERGENIC
2L	9895983	2L_9895983_SNP [dm3] 2L_9895983_SNP [dm6]	G	A	2.729e^-4	0.526	SYNONYMOUS_CODING Bka UPSTREAM Uhg2 DOWNSTREAM RpS2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13863420	2R_13863420_SNP [dm3] 2R_17975915_SNP [dm6]	T	G	2.737e^-4	0.526	UTR_3_PRIME dpr13
2R	8616379	2R_8616379_SNP [dm3] 2R_12728874_SNP [dm6]	A	T	2.743e^-4	0.526	INTRON CG42663
3L	545669	3L_545669_SNP [dm3] 3L_545669_SNP [dm6]	C	T	2.746e^-4	0.526	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	22320799	X_22320799_SNP [dm3] X_22918963_SNP [dm6]	C	A	2.756e^-4	0.526	INTERGENIC
3R	22854458	3R_22854458_SNP [dm3] 3R_27028736_SNP [dm6]	C	A	2.757e^-4	0.526	INTRON RYa-R	TF binding site mE1_TFBS_cad
2L	11907061	2L_11907061_SNP [dm3] 2L_11907061_SNP [dm6]	T	G	2.759e^-4	0.526	INTRON Pde1c
X	8665955	X_8665955_INS [dm3] X_8771922_INS [dm6]	T	TT	2.762e^-4	0.526	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16508409	3R_16508409_SNP [dm3] 3R_20682687_SNP [dm6]	C	T	2.765e^-4	0.526	INTERGENIC
3L	10515572	3L_10515572_SNP [dm3] 3L_10522472_SNP [dm6]	C	T	2.770e^-4	0.526	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9726976	2L_9726976_SNP [dm3] 2L_9726976_SNP [dm6]	G	T	2.773e^-4	0.526	INTRON Nckx30C
2L	7945893	2L_7945893_SNP [dm3] 2L_7945893_SNP [dm6]	A	T	2.774e^-4	0.526	INTRON Snoo
2L	13987685	2L_13987685_SNP [dm3] 2L_13987685_SNP [dm6]	C	T	2.774e^-4	0.526	INTRON rk
3L	5862502	3L_5862502_SNP [dm3] 3L_5869402_SNP [dm6]	T	A	2.775e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5862738	3L_5862738_SNP [dm3] 3L_5869638_SNP [dm6]	C	T	2.775e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5862759	3L_5862759_SNP [dm3] 3L_5869659_SNP [dm6]	A	T	2.775e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5862796	3L_5862796_SNP [dm3] 3L_5869696_SNP [dm6]	G	C	2.775e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5862904	3L_5862904_SNP [dm3] 3L_5869804_SNP [dm6]	T	C	2.775e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21919652	3R_21919652_SNP [dm3] 3R_26093930_SNP [dm6]	T	A	2.780e^-4	0.526	UPSTREAM CR44319 INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6555807	2R_6555807_SNP [dm3] 2R_10668302_SNP [dm6]	T	C	2.790e^-4	0.526	INTERGENIC
3R	13472664	3R_13472664_SNP [dm3] 3R_17646942_SNP [dm6]	C	T	2.792e^-4	0.526	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13421368	X_13421368_SNP [dm3] X_13527335_SNP [dm6]	A	T	2.793e^-4	0.526	UPSTREAM CG15754 DOWNSTREAM Neto INTERGENIC
3R	13469257	3R_13469257_SNP [dm3] 3R_17643535_SNP [dm6]	G	A	2.800e^-4	0.526	INTRON CG43175
3R	19180188	3R_19180188_SNP [dm3] 3R_23354466_SNP [dm6]	C	G	2.801e^-4	0.526	SYNONYMOUS_CODING DNApol-epsilon DOWNSTREAM ATPsyn-Cf6
3L	9795696	3L_9795696_SNP [dm3] 3L_9802596_SNP [dm6]	C	T	2.803e^-4	0.526	UPSTREAM Ilp3 DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9795701	3L_9795701_SNP [dm3] 3L_9802601_SNP [dm6]	T	G	2.803e^-4	0.526	UPSTREAM Ilp3 DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9795709	3L_9795709_INS [dm3] 3L_9802609_INS [dm6]	T	TT	2.803e^-4	0.526	UPSTREAM Ilp3 DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10244863	2R_10244863_SNP [dm3] 2R_14357358_SNP [dm6]	A	T	2.805e^-4	0.526	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	17672102	3L_17672102_INS [dm3] 3L_17679002_INS [dm6]	AG	TTACATT	2.806e^-4	0.526	INTRON CG34251
2R	17367505	2R_17367505_SNP [dm3] 2R_21480000_SNP [dm6]	A	T	2.809e^-4	0.526	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18488341	3L_18488341_SNP [dm3] 3L_18495241_SNP [dm6]	C	T	2.809e^-4	0.526	INTRON AstC-R2
X	12811067	X_12811067_SNP [dm3] X_12917034_SNP [dm6]	T	A	2.812e^-4	0.526	UPSTREAM fne INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18597398	3R_18597398_SNP [dm3] 3R_22771676_SNP [dm6]	C	T	2.816e^-4	0.526	NON_SYNONYMOUS_CODING CG43095 UPSTREAM CG43094 INTRON Usp12-46 & 1 other
3L	14335284	3L_14335284_DEL [dm3] 3L_14342184_DEL [dm6]	TCAAAGGAGTCCCC...	T	2.819e^-4	0.526	INTRON fz
3R	21993952	3R_21993952_SNP [dm3] 3R_26168230_SNP [dm6]	T	C	2.822e^-4	0.526	INTERGENIC
3R	2717416	3R_2717416_SNP [dm3] 3R_6891694_SNP [dm6]	A	T	2.830e^-4	0.526	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	21549588	3R_21549588_SNP [dm3] 3R_25723866_SNP [dm6]	G	T	2.832e^-4	0.526	INTRON LpR2
2R	14390254	2R_14390254_SNP [dm3] 2R_18502749_SNP [dm6]	C	T	2.834e^-4	0.526	UPSTREAM GstE11 INTERGENIC
2L	3450325	2L_3450325_SNP [dm3] 2L_3450325_SNP [dm6]	G	A	2.836e^-4	0.526	INTRON Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9047476	2R_9047476_SNP [dm3] 2R_13159971_SNP [dm6]	T	C	2.836e^-4	0.526	UTR_3_PRIME CG34439 UPSTREAM Nrk & 1 other DOWNSTREAM CG34439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14593104	2L_14593104_SNP [dm3] 2L_14593104_SNP [dm6]	A	T	2.842e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3016480	2L_3016480_SNP [dm3] 2L_3016480_SNP [dm6]	T	C	2.843e^-4	0.526	UTR_3_PRIME CG17224 DOWNSTREAM CG17224 & 1 other
2R	6938282	2R_6938282_DEL [dm3] 2R_11050777_DEL [dm6]	CTC	C	2.846e^-4	0.526	INTRON luna
2L	5186065	2L_5186065_SNP [dm3] 2L_5186065_SNP [dm6]	C	T	2.848e^-4	0.526	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5845383	X_5845383_SNP [dm3] X_5951350_SNP [dm6]	G	A	2.852e^-4	0.526	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9611033	3L_9611033_SNP [dm3] 3L_9617933_SNP [dm6]	A	G	2.856e^-4	0.526	INTRON LanB2
2R	15053496	2R_15053496_SNP [dm3] 2R_19165991_SNP [dm6]	T	G	2.858e^-4	0.526	START_GAINED CG10737 UTR_5_PRIME CG10737 INTRON CG10737

By genomic position
Variant impact
Gene name

Microbiota_OTU001 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results