DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.822e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05229

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.1564	0.0759

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1304 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10346507	2R_10346507_SNP [dm3] 2R_14459002_SNP [dm6]	C	T	4.294e^-6	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6024547	3L_6024547_SNP [dm3] 3L_6031447_SNP [dm6]	G	C	1.001e^-5	0.946	INTERGENIC
2L	4130306	2L_4130306_SNP [dm3] 2L_4130306_SNP [dm6]	T	A	1.274e^-5	0.946	INTERGENIC
3L	9177435	3L_9177435_SNP [dm3] 3L_9184335_SNP [dm6]	A	G	1.301e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10855498	3R_10855498_SNP [dm3] 3R_15029776_SNP [dm6]	T	G	1.410e^-5	0.946	INTERGENIC
3L	9177462	3L_9177462_SNP [dm3] 3L_9184362_SNP [dm6]	G	T	1.430e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3893262	3R_3893262_SNP [dm3] 3R_8067540_SNP [dm6]	T	C	1.518e^-5	0.946	INTRON mAChR-B
3L	7982920	3L_7982920_DEL [dm3] 3L_7989820_DEL [dm6]	TA	G	1.520e^-5	0.946	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	4049383	2L_4049383_SNP [dm3] 2L_4049383_SNP [dm6]	C	A	1.692e^-5	0.946	INTRON ed
2L	3384823	2L_3384823_SNP [dm3] 2L_3384823_SNP [dm6]	C	G	1.987e^-5	0.946	INTERGENIC
X	6129486	X_6129486_SNP [dm3] X_6235453_SNP [dm6]	T	A	2.534e^-5	0.946	UTR_3_PRIME CG14446
2R	10346503	2R_10346503_SNP [dm3] 2R_14458998_SNP [dm6]	C	T	2.571e^-5	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10346504	2R_10346504_SNP [dm3] 2R_14458999_SNP [dm6]	A	T	2.578e^-5	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10346508	2R_10346508_SNP [dm3] 2R_14459003_SNP [dm6]	A	T	2.578e^-5	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10346542	2R_10346542_SNP [dm3] 2R_14459037_SNP [dm6]	C	T	2.578e^-5	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6136486	X_6136486_SNP [dm3] X_6242453_SNP [dm6]	G	A	2.798e^-5	0.946	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	10855717	3R_10855717_SNP [dm3] 3R_15029995_SNP [dm6]	A	C	2.868e^-5	0.946	INTERGENIC
2R	6527136	2R_6527136_SNP [dm3] 2R_10639631_SNP [dm6]	C	T	2.961e^-5	0.946	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3L	9343849	3L_9343849_SNP [dm3] 3L_9350749_SNP [dm6]	A	T	3.223e^-5	0.946	NON_SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
2R	18669410	2R_18669410_SNP [dm3] 2R_22781905_SNP [dm6]	A	G	3.343e^-5	0.946	INTRON CG42260
2R	17118011	2R_17118011_SNP [dm3] 2R_21230506_SNP [dm6]	G	T	3.520e^-5	0.946	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	6572823	3R_6572823_SNP [dm3] 3R_10747101_SNP [dm6]	T	A	3.694e^-5	0.946	INTRON TkR86C
3R	12728815	3R_12728815_SNP [dm3] 3R_16903093_SNP [dm6]	T	C	3.805e^-5	0.946	INTRON iab-8
2R	10814468	2R_10814468_SNP [dm3] 2R_14926963_SNP [dm6]	G	T	4.010e^-5	0.946	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	4.061e^-5	0.946	INTERGENIC
2L	3703499	2L_3703499_SNP [dm3] 2L_3703499_SNP [dm6]	G	A	4.065e^-5	0.946	UPSTREAM CG2816 DOWNSTREAM CR44311 & 1 other INTERGENIC
X	3020302	X_3020302_SNP [dm3] X_3126269_SNP [dm6]	A	G	4.066e^-5	0.946	INTRON kirre
3L	17985935	3L_17985935_SNP [dm3] 3L_17992835_SNP [dm6]	C	A	4.155e^-5	0.946	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13943443	3R_13943443_SNP [dm3] 3R_18117721_SNP [dm6]	T	C	4.214e^-5	0.946	INTRON sr
2R	11364164	2R_11364164_SNP [dm3] 2R_15476659_SNP [dm6]	C	T	4.293e^-5	0.946	INTRON CG8180
3L	14643576	3L_14643576_SNP [dm3] 3L_14650476_SNP [dm6]	A	C	4.361e^-5	0.946	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4285635	X_4285635_SNP [dm3] X_4391602_SNP [dm6]	C	G	4.564e^-5	0.946	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21649465	3L_21649465_SNP [dm3] 3L_21656365_SNP [dm6]	G	C	4.585e^-5	0.946	INTRON CG43980
3L	11407095	3L_11407095_SNP [dm3] 3L_11413995_SNP [dm6]	A	C	4.588e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	5380170	X_5380170_SNP [dm3] X_5486137_SNP [dm6]	G	T	4.597e^-5	0.946	INTRON SPR	TF binding site BDTNP1_TFBS_da
3L	9339806	3L_9339806_SNP [dm3] 3L_9346706_SNP [dm6]	A	T	4.839e^-5	0.946	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	11343848	2R_11343848_SNP [dm3] 2R_15456343_SNP [dm6]	T	C	4.840e^-5	0.946	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10346553	2R_10346553_SNP [dm3] 2R_14459048_SNP [dm6]	C	T	5.101e^-5	0.946	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2962491	3L_2962491_SNP [dm3] 3L_2962491_SNP [dm6]	A	T	5.229e^-5	0.946	STOP_LOST Or63a SPLICE_SITE_REGION Or63a INTRON Or63a
3L	2962513	3L_2962513_SNP [dm3] 3L_2962513_SNP [dm6]	T	C	5.229e^-5	0.946	UTR_3_PRIME Or63a INTRON Or63a
X	15327511	X_15327511_SNP [dm3] X_15433478_SNP [dm6]	C	A	5.286e^-5	0.946	INTRON Cngl	transposable element FlyBase
2R	11342370	2R_11342370_SNP [dm3] 2R_15454865_SNP [dm6]	C	G	5.355e^-5	0.946	INTRON CG43729
3L	9343847	3L_9343847_SNP [dm3] 3L_9350747_SNP [dm6]	T	C	5.368e^-5	0.946	SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
X	20494068	X_20494068_SNP [dm3] X_20623041_SNP [dm6]	A	G	5.453e^-5	0.946	INTRON RunxA
X	18637172	X_18637172_SNP [dm3] X_18743139_SNP [dm6]	C	T	5.524e^-5	0.946	INTERGENIC
2R	11342386	2R_11342386_SNP [dm3] 2R_15454881_SNP [dm6]	G	T	5.615e^-5	0.946	INTRON CG43729
3L	2083118	3L_2083118_SNP [dm3] 3L_2083118_SNP [dm6]	C	T	5.817e^-5	0.946	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6342541	3L_6342541_INS [dm3] 3L_6349441_INS [dm6]	A	AA	6.115e^-5	0.946	UPSTREAM Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18674126	2R_18674126_SNP [dm3] 2R_22786621_SNP [dm6]	C	A	6.166e^-5	0.946	INTRON CG42260
2R	2673987	2R_2673987_SNP [dm3] 2R_6786482_SNP [dm6]	G	A	6.251e^-5	0.946	INTRON Epac
3L	11849972	3L_11849972_SNP [dm3] 3L_11856872_SNP [dm6]	A	T	6.282e^-5	0.946	INTRON CG44837
3L	9177444	3L_9177444_SNP [dm3] 3L_9184344_SNP [dm6]	A	C	6.458e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9352978	3L_9352978_SNP [dm3] 3L_9359878_SNP [dm6]	T	G	6.622e^-5	0.946	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2R	16652875	2R_16652875_SNP [dm3] 2R_20765370_SNP [dm6]	C	T	6.826e^-5	0.946	INTERGENIC
3R	4915662	3R_4915662_SNP [dm3] 3R_9089940_SNP [dm6]	C	T	6.996e^-5	0.946	INTRON pum
2L	3703331	2L_3703331_SNP [dm3] 2L_3703331_SNP [dm6]	T	C	7.154e^-5	0.946	UPSTREAM CG2816 DOWNSTREAM CR44311 & 1 other INTERGENIC
3R	22466299	3R_22466299_SNP [dm3] 3R_26640577_SNP [dm6]	A	G	7.275e^-5	0.946	SYNONYMOUS_CODING TwdlD
3L	2959849	3L_2959849_SNP [dm3] 3L_2959849_SNP [dm6]	A	G	7.374e^-5	0.946	UTR_3_PRIME CG34025 DOWNSTREAM Shab
2L	5809499	2L_5809499_SNP [dm3] 2L_5809499_SNP [dm6]	T	G	7.411e^-5	0.946	UPSTREAM CR44575 & 1 other DOWNSTREAM CG11034 INTERGENIC
3R	4326804	3R_4326804_SNP [dm3] 3R_8501082_SNP [dm6]	A	T	7.439e^-5	0.946	INTERGENIC
3R	12728942	3R_12728942_SNP [dm3] 3R_16903220_SNP [dm6]	A	T	7.504e^-5	0.946	INTRON iab-8
2R	16861967	2R_16861967_SNP [dm3] 2R_20974462_SNP [dm6]	G	A	7.711e^-5	0.946	UPSTREAM CG15649 INTERGENIC
2R	802575	2R_802575_SNP [dm3] 2R_4915070_SNP [dm6]	T	A	7.863e^-5	0.946	INTERGENIC
2R	802586	2R_802586_SNP [dm3] 2R_4915081_SNP [dm6]	T	A	7.863e^-5	0.946	INTERGENIC
3R	3884282	3R_3884282_SNP [dm3] 3R_8058560_SNP [dm6]	G	C	8.097e^-5	0.946	UPSTREAM mAChR-B INTERGENIC
3R	3893362	3R_3893362_SNP [dm3] 3R_8067640_SNP [dm6]	T	A	8.131e^-5	0.946	INTRON mAChR-B
2L	2832191	2L_2832191_SNP [dm3] 2L_2832191_SNP [dm6]	C	A	8.223e^-5	0.946	INTERGENIC
2R	17243378	2R_17243378_SNP [dm3] 2R_21355873_SNP [dm6]	G	A	8.263e^-5	0.946	UTR_3_PRIME cv-2	TF binding site mE1_TFBS_cad
2R	10001604	2R_10001604_SNP [dm3] 2R_14114099_SNP [dm6]	A	G	8.369e^-5	0.946	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	4285668	X_4285668_SNP [dm3] X_4391635_SNP [dm6]	A	G	8.432e^-5	0.946	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15684796	X_15684796_SNP [dm3] X_15790763_SNP [dm6]	C	T	8.692e^-5	0.946	SYNONYMOUS_CODING Rhp
2R	11393388	2R_11393388_SNP [dm3] 2R_15505883_SNP [dm6]	G	A	8.742e^-5	0.946	SYNONYMOUS_CODING Ir52c UPSTREAM Ir52d
X	8473181	X_8473181_SNP [dm3] X_8579148_SNP [dm6]	A	T	8.832e^-5	0.946	INTRON CG12065
X	15327555	X_15327555_SNP [dm3] X_15433522_SNP [dm6]	G	A	8.840e^-5	0.946	INTRON Cngl	transposable element FlyBase
3R	13943448	3R_13943448_SNP [dm3] 3R_18117726_SNP [dm6]	T	C	8.987e^-5	0.946	INTRON sr
3L	2376438	3L_2376438_INS [dm3] 3L_2376438_INS [dm6]	A	AATAATAATAATAATAATAA...	9.063e^-5	0.946	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
2R	18669470	2R_18669470_SNP [dm3] 2R_22781965_SNP [dm6]	A	T	9.419e^-5	0.946	INTRON CG42260
3L	9345653	3L_9345653_SNP [dm3] 3L_9352553_SNP [dm6]	A	G	9.488e^-5	0.946	INTRON UGP
3L	7982980	3L_7982980_SNP [dm3] 3L_7989880_SNP [dm6]	T	C	9.520e^-5	0.946	INTRON nmo
3R	22466323	3R_22466323_SNP [dm3] 3R_26640601_SNP [dm6]	T	C	9.550e^-5	0.946	SYNONYMOUS_CODING TwdlD
2R	15042218	2R_15042218_SNP [dm3] 2R_19154713_SNP [dm6]	T	A	9.866e^-5	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15042226	2R_15042226_SNP [dm3] 2R_19154721_SNP [dm6]	A	C	9.866e^-5	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	4699131	3R_4699131_SNP [dm3] 3R_8873409_SNP [dm6]	G	T	9.898e^-5	0.946	INTRON pyd
X	20494044	X_20494044_SNP [dm3] X_20623017_SNP [dm6]	A	G	1.042e^-4	0.946	INTRON RunxA
3L	2082777	3L_2082777_SNP [dm3] 3L_2082777_SNP [dm6]	T	G	1.047e^-4	0.946	NON_SYNONYMOUS_CODING sls INTRON sls
X	12434553	X_12434553_SNP [dm3] X_12540520_SNP [dm6]	T	C	1.074e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11384563	3R_11384563_SNP [dm3] 3R_15558841_SNP [dm6]	C	T	1.080e^-4	0.946	INTERGENIC
3L	7982902	3L_7982902_SNP [dm3] 3L_7989802_SNP [dm6]	G	A	1.086e^-4	0.946	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	4225535	2L_4225535_SNP [dm3] 2L_4225535_SNP [dm6]	C	A	1.114e^-4	0.946	SYNONYMOUS_CODING CG3702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20495660	3R_20495660_SNP [dm3] 3R_24669938_SNP [dm6]	A	T	1.164e^-4	0.946	INTRON slo
2R	17117951	2R_17117951_SNP [dm3] 2R_21230446_SNP [dm6]	G	A	1.165e^-4	0.946	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	10345388	2R_10345388_DEL [dm3] 2R_14457883_DEL [dm6]	TGTGCACAT	T	1.169e^-4	0.946	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10969232	2L_10969232_SNP [dm3] 2L_10969232_SNP [dm6]	T	G	1.180e^-4	0.946	SYNONYMOUS_CODING CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10969262	2L_10969262_SNP [dm3] 2L_10969262_SNP [dm6]	A	G	1.180e^-4	0.946	SYNONYMOUS_CODING CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10969274	2L_10969274_SNP [dm3] 2L_10969274_SNP [dm6]	G	A	1.180e^-4	0.946	SYNONYMOUS_CODING CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16366902	3L_16366902_SNP [dm3] 3L_16373802_SNP [dm6]	G	T	1.188e^-4	0.946	UTR_3_PRIME roq
3L	1469004	3L_1469004_SNP [dm3] 3L_1469004_SNP [dm6]	T	C	1.213e^-4	0.946	DOWNSTREAM rho INTRON Ptp61F
3L	14354197	3L_14354197_SNP [dm3] 3L_14361097_SNP [dm6]	G	C	1.220e^-4	0.946	INTRON fz
3L	2376565	3L_2376565_SNP [dm3] 3L_2376565_SNP [dm6]	A	G	1.232e^-4	0.946	SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
3R	4107003	3R_4107003_SNP [dm3] 3R_8281281_SNP [dm6]	T	A	1.236e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	17127128	2R_17127128_SNP [dm3] 2R_21239623_SNP [dm6]	G	A	1.238e^-4	0.946	INTRON ASPP
2R	11364469	2R_11364469_SNP [dm3] 2R_15476964_SNP [dm6]	A	G	1.247e^-4	0.946	INTRON CG8180
X	16472479	X_16472479_SNP [dm3] X_16578446_SNP [dm6]	T	G	1.274e^-4	0.946	INTRON CanA-14F
2L	3957087	2L_3957087_INS [dm3] 2L_3957087_INS [dm6]	C	CACGGCAC	1.283e^-4	0.946	INTRON fred
3R	7052379	3R_7052379_SNP [dm3] 3R_11226657_SNP [dm6]	T	A	1.309e^-4	0.946	UTR_3_PRIME scpr-C UPSTREAM CG17726 DOWNSTREAM scpr-C
3L	8535994	3L_8535994_DEL [dm3] 3L_8542894_DEL [dm6]	GTTC	G	1.326e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	12434573	X_12434573_SNP [dm3] X_12540540_SNP [dm6]	A	T	1.328e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	17961254	2L_17961254_SNP [dm3] 2L_17961254_SNP [dm6]	G	C	1.333e^-4	0.946	INTERGENIC
X	6535042	X_6535042_SNP [dm3] X_6641009_SNP [dm6]	G	A	1.353e^-4	0.946	INTRON pigs
2R	9519957	2R_9519957_SNP [dm3] 2R_13632452_SNP [dm6]	C	G	1.361e^-4	0.946	INTRON fas
2R	19364319	2R_19364319_SNP [dm3] 2R_23476796_SNP [dm6]	T	G	1.373e^-4	0.946	UPSTREAM CG13557 DOWNSTREAM CR43793 INTRON CG43795 EXON CR43792
2R	17649120	2R_17649120_INS [dm3] 2R_21761615_INS [dm6]	T	TGG	1.391e^-4	0.946	INTERGENIC
X	694253	X_694253_SNP [dm3] X_800220_SNP [dm6]	G	A	1.416e^-4	0.946	SYNONYMOUS_CODING Rbf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16106681	2R_16106681_SNP [dm3] 2R_20219176_SNP [dm6]	G	A	1.442e^-4	0.946	INTERGENIC
2L	7456118	2L_7456118_SNP [dm3] 2L_7456118_SNP [dm6]	T	A	1.442e^-4	0.946	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
X	17615329	X_17615329_SNP [dm3] X_17721296_SNP [dm6]	A	G	1.448e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	19568432	2R_19568432_SNP [dm3] 2R_23680909_SNP [dm6]	T	C	1.448e^-4	0.946	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
2R	19568433	2R_19568433_SNP [dm3] 2R_23680910_SNP [dm6]	A	T	1.448e^-4	0.946	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
3R	6572752	3R_6572752_SNP [dm3] 3R_10747030_SNP [dm6]	G	T	1.452e^-4	0.946	INTRON TkR86C
2L	4126958	2L_4126958_SNP [dm3] 2L_4126958_SNP [dm6]	C	T	1.476e^-4	0.946	INTERGENIC
2L	4127065	2L_4127065_INS [dm3] 2L_4127065_INS [dm6]	A	AA	1.476e^-4	0.946	INTERGENIC
X	12434510	X_12434510_SNP [dm3] X_12540477_SNP [dm6]	T	G	1.487e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18005876	2L_18005876_SNP [dm3] 2L_18005876_SNP [dm6]	T	G	1.495e^-4	0.946	UPSTREAM CG5693 INTERGENIC
3L	2083049	3L_2083049_SNP [dm3] 3L_2083049_SNP [dm6]	T	C	1.501e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
3L	9177533	3L_9177533_SNP [dm3] 3L_9184433_SNP [dm6]	T	C	1.502e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12728887	3R_12728887_SNP [dm3] 3R_16903165_SNP [dm6]	C	T	1.521e^-4	0.946	INTRON iab-8
2L	7456139	2L_7456139_SNP [dm3] 2L_7456139_SNP [dm6]	T	C	1.527e^-4	0.946	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2L	7456217	2L_7456217_SNP [dm3] 2L_7456217_SNP [dm6]	T	C	1.527e^-4	0.946	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2R	19568425	2R_19568425_SNP [dm3] 2R_23680902_SNP [dm6]	C	G	1.542e^-4	0.946	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
3R	18990903	3R_18990903_SNP [dm3] 3R_23165181_SNP [dm6]	G	T	1.543e^-4	0.946	INTERGENIC
3R	17624423	3R_17624423_SNP [dm3] 3R_21798701_SNP [dm6]	T	C	1.546e^-4	0.946	UPSTREAM mir-999 & 1 other INTRON CASK
3R	14837783	3R_14837783_SNP [dm3] 3R_19012061_SNP [dm6]	C	T	1.550e^-4	0.946	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
X	20685571	X_20685571_SNP [dm3] X_20814544_SNP [dm6]	A	C	1.557e^-4	0.946	INTRON shakB
2R	4945521	2R_4945521_SNP [dm3] 2R_9058016_SNP [dm6]	C	G	1.558e^-4	0.946	INTRON CG13743
2L	11640605	2L_11640605_SNP [dm3] 2L_11640605_SNP [dm6]	A	G	1.559e^-4	0.946	INTERGENIC
2R	17437609	2R_17437609_INS [dm3] 2R_21550104_INS [dm6]	T	TAT	1.561e^-4	0.946	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19568424	2R_19568424_INS [dm3] 2R_23680901_INS [dm6]	G	GG	1.562e^-4	0.946	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
3L	15262535	3L_15262535_SNP [dm3] 3L_15269435_SNP [dm6]	A	T	1.570e^-4	0.946	INTERGENIC
3R	26178449	3R_26178449_SNP [dm3] 3R_30352727_SNP [dm6]	A	G	1.574e^-4	0.946	INTRON hdc
2R	17649078	2R_17649078_SNP [dm3] 2R_21761573_SNP [dm6]	T	C	1.582e^-4	0.946	INTERGENIC
3R	10147619	3R_10147619_SNP [dm3] 3R_14321897_SNP [dm6]	A	G	1.583e^-4	0.946	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7768778	3L_7768778_SNP [dm3] 3L_7775678_SNP [dm6]	T	C	1.591e^-4	0.946	UPSTREAM Clk INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15531961	2R_15531961_SNP [dm3] 2R_19644456_SNP [dm6]	A	G	1.591e^-4	0.946	DOWNSTREAM CG15124 INTERGENIC
2R	15532002	2R_15532002_SNP [dm3] 2R_19644497_SNP [dm6]	C	G	1.591e^-4	0.946	DOWNSTREAM CG15124 INTERGENIC
2L	1218925	2L_1218925_SNP [dm3] 2L_1218925_SNP [dm6]	T	G	1.599e^-4	0.946	UPSTREAM CG42329 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5550498	3L_5550498_SNP [dm3] 3L_5557398_SNP [dm6]	T	A	1.600e^-4	0.946	INTERGENIC
2R	11082005	2R_11082005_SNP [dm3] 2R_15194500_SNP [dm6]	A	T	1.609e^-4	0.946	NON_SYNONYMOUS_CODING CG43829
2R	4946218	2R_4946218_SNP [dm3] 2R_9058713_SNP [dm6]	A	T	1.620e^-4	0.946	INTRON CG13743
X	4420929	X_4420929_SNP [dm3] X_4526896_SNP [dm6]	A	C	1.633e^-4	0.946	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16996360	3R_16996360_SNP [dm3] 3R_21170638_SNP [dm6]	T	A	1.636e^-4	0.946	INTRON SNF4Agamma
2R	7865806	2R_7865806_SNP [dm3] 2R_11978301_SNP [dm6]	G	A	1.637e^-4	0.946	SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290 & 1 other	TF binding site mE1_TFBS_sens
2L	14362052	2L_14362052_SNP [dm3] 2L_14362052_SNP [dm6]	G	T	1.649e^-4	0.946	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2506235	2L_2506235_DEL [dm3] 2L_2506235_DEL [dm6]	TGGGG	CC	1.653e^-4	0.946	INTERGENIC
3L	9279507	3L_9279507_SNP [dm3] 3L_9286407_SNP [dm6]	T	C	1.665e^-4	0.946	UTR_3_PRIME GluRIB
3L	8535984	3L_8535984_SNP [dm3] 3L_8542884_SNP [dm6]	A	G	1.671e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	3897826	3R_3897826_SNP [dm3] 3R_8072104_SNP [dm6]	T	C	1.679e^-4	0.946	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8003508	2R_8003508_INS [dm3] 2R_12116003_INS [dm6]	A	AT	1.710e^-4	0.946	INTRON jeb
3L	8659620	3L_8659620_SNP [dm3] 3L_8666520_SNP [dm6]	G	A	1.710e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	3890981	3R_3890981_SNP [dm3] 3R_8065259_SNP [dm6]	C	A	1.715e^-4	0.946	INTRON mAChR-B
X	8473202	X_8473202_SNP [dm3] X_8579169_SNP [dm6]	G	A	1.715e^-4	0.946	INTRON CG12065
3R	12113328	3R_12113328_SNP [dm3] 3R_16287606_SNP [dm6]	G	C	1.718e^-4	0.946	INTRON gish
X	16878194	X_16878194_SNP [dm3] X_16984161_SNP [dm6]	G	T	1.740e^-4	0.946	INTRON CG45002
3R	23422569	3R_23422569_SNP [dm3] 3R_27596847_SNP [dm6]	C	T	1.742e^-4	0.946	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2R	15116536	2R_15116536_SNP [dm3] 2R_19229031_SNP [dm6]	C	A	1.742e^-4	0.946	UPSTREAM cora DOWNSTREAM CG7137 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	19054068	3L_19054068_SNP [dm3] 3L_19060968_SNP [dm6]	C	T	1.756e^-4	0.946	SYNONYMOUS_CODING CG3797	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8781406	X_8781406_SNP [dm3] X_8887373_SNP [dm6]	G	A	1.777e^-4	0.946	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10001054	2R_10001054_SNP [dm3] 2R_14113549_SNP [dm6]	A	C	1.779e^-4	0.946	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	4913483	2L_4913483_SNP [dm3] 2L_4913483_SNP [dm6]	G	A	1.785e^-4	0.946	INTRON hoe1
3L	9177495	3L_9177495_SNP [dm3] 3L_9184395_SNP [dm6]	C	G	1.813e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9177507	3L_9177507_SNP [dm3] 3L_9184407_SNP [dm6]	T	C	1.813e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9177516	3L_9177516_SNP [dm3] 3L_9184416_SNP [dm6]	C	A	1.813e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9177517	3L_9177517_SNP [dm3] 3L_9184417_SNP [dm6]	A	G	1.813e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12979562	2L_12979562_SNP [dm3] 2L_12979562_SNP [dm6]	C	T	1.828e^-4	0.946	SYNONYMOUS_CODING Vha68-3 DOWNSTREAM Vha68-2
3R	12617096	3R_12617096_SNP [dm3] 3R_16791374_SNP [dm6]	T	C	1.830e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
X	12434511	X_12434511_SNP [dm3] X_12540478_SNP [dm6]	T	G	1.833e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12728821	3R_12728821_SNP [dm3] 3R_16903099_SNP [dm6]	G	A	1.838e^-4	0.946	INTRON iab-8
3R	12728832	3R_12728832_SNP [dm3] 3R_16903110_SNP [dm6]	T	A	1.838e^-4	0.946	INTRON iab-8
3R	12728836	3R_12728836_SNP [dm3] 3R_16903114_SNP [dm6]	A	T	1.838e^-4	0.946	INTRON iab-8
3R	12728840	3R_12728840_DEL [dm3] 3R_16903118_DEL [dm6]	AAC	A	1.838e^-4	0.946	INTRON iab-8
3L	14373995	3L_14373995_SNP [dm3] 3L_14380895_SNP [dm6]	C	T	1.842e^-4	0.946	INTERGENIC
2R	15444093	2R_15444093_DEL [dm3] 2R_19556588_DEL [dm6]	AA	A	1.850e^-4	0.946	INTRON sm
X	21136923	X_21136923_SNP [dm3] X_21265896_SNP [dm6]	T	G	1.865e^-4	0.946	INTRON CG32521
2L	14368207	2L_14368207_SNP [dm3] 2L_14368207_SNP [dm6]	C	T	1.871e^-4	0.946	INTERGENIC
3R	3771807	3R_3771807_SNP [dm3] 3R_7946085_SNP [dm6]	T	A	1.872e^-4	0.946	INTRON dsx
2R	4945485	2R_4945485_SNP [dm3] 2R_9057980_SNP [dm6]	C	T	1.878e^-4	0.946	INTRON CG13743
3L	8653114	3L_8653114_SNP [dm3] 3L_8660014_SNP [dm6]	C	T	1.883e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12434558	X_12434558_SNP [dm3] X_12540525_SNP [dm6]	A	T	1.886e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5613212	X_5613212_SNP [dm3] X_5719179_SNP [dm6]	T	C	1.889e^-4	0.946	DOWNSTREAM CG32758 INTERGENIC
X	20418861	X_20418861_SNP [dm3] X_20547834_SNP [dm6]	C	A	1.893e^-4	0.946	INTRON RunxB
X	22041882	X_22041882_SNP [dm3] X_22640046_SNP [dm6]	A	C	1.903e^-4	0.946	INTERGENIC	transposable element FlyBase
2R	15042215	2R_15042215_SNP [dm3] 2R_19154710_SNP [dm6]	A	C	1.909e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15042217	2R_15042217_SNP [dm3] 2R_19154712_SNP [dm6]	C	A	1.909e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15042241	2R_15042241_SNP [dm3] 2R_19154736_SNP [dm6]	C	A	1.909e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17649028	2R_17649028_SNP [dm3] 2R_21761523_SNP [dm6]	A	C	1.920e^-4	0.946	INTERGENIC
X	8473238	X_8473238_SNP [dm3] X_8579205_SNP [dm6]	A	T	1.937e^-4	0.946	INTRON CG12065
3L	15060141	3L_15060141_INS [dm3] 3L_15067041_INS [dm6]	A	AA	1.946e^-4	0.946	INTRON cp309
2R	15042109	2R_15042109_SNP [dm3] 2R_19154604_SNP [dm6]	T	A	1.948e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_Trl
X	7611480	X_7611480_SNP [dm3] X_7717447_SNP [dm6]	T	A	1.960e^-4	0.946	INTRON CG15478
3L	5572233	3L_5572233_SNP [dm3] 3L_5579133_SNP [dm6]	T	C	1.976e^-4	0.946	INTERGENIC
2R	20172293	2R_20172293_SNP [dm3] 2R_24284770_SNP [dm6]	C	T	1.993e^-4	0.946	INTRON nvy
X	3417084	X_3417084_SNP [dm3] X_3523051_SNP [dm6]	C	A	2.005e^-4	0.946	DOWNSTREAM CR44999 INTRON CG32791
3R	17725659	3R_17725659_SNP [dm3] 3R_21899937_SNP [dm6]	T	A	2.010e^-4	0.946	INTRON CG6678
3L	7982951	3L_7982951_SNP [dm3] 3L_7989851_SNP [dm6]	A	C	2.012e^-4	0.946	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	18432799	2L_18432799_SNP [dm3] 2L_18432799_SNP [dm6]	T	C	2.019e^-4	0.946	UPSTREAM CR44488 INTERGENIC
2R	10698357	2R_10698357_SNP [dm3] 2R_14810852_SNP [dm6]	C	T	2.022e^-4	0.946	DOWNSTREAM hui INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27684431	3R_27684431_SNP [dm3] 3R_31858709_SNP [dm6]	A	C	2.024e^-4	0.946	INTRON heph
2L	2832178	2L_2832178_SNP [dm3] 2L_2832178_SNP [dm6]	T	C	2.040e^-4	0.946	INTERGENIC
3L	9353001	3L_9353001_SNP [dm3] 3L_9359901_SNP [dm6]	T	C	2.052e^-4	0.946	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	17976741	3L_17976741_SNP [dm3] 3L_17983641_SNP [dm6]	T	A	2.054e^-4	0.946	INTRON Eip75B
2R	14477286	2R_14477286_SNP [dm3] 2R_18589781_SNP [dm6]	T	G	2.060e^-4	0.946	INTRON GEFmeso
2L	4324679	2L_4324679_SNP [dm3] 2L_4324679_SNP [dm6]	C	A	2.071e^-4	0.946	UTR_5_PRIME CG16857 DOWNSTREAM tutl
3R	16996279	3R_16996279_SNP [dm3] 3R_21170557_SNP [dm6]	G	A	2.090e^-4	0.946	INTRON SNF4Agamma
3L	18313663	3L_18313663_INS [dm3] 3L_18320563_INS [dm6]	A	AA	2.091e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	8161479	3R_8161479_SNP [dm3] 3R_12335757_SNP [dm6]	A	G	2.095e^-4	0.946	UPSTREAM CR44941 INTERGENIC
X	2995406	X_2995406_SNP [dm3] X_3101373_SNP [dm6]	T	G	2.095e^-4	0.946	INTRON kirre
3L	19066606	3L_19066606_SNP [dm3] 3L_19073506_SNP [dm6]	T	C	2.097e^-4	0.946	INTRON Mkp3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5440960	3L_5440960_SNP [dm3] 3L_5447860_SNP [dm6]	T	C	2.109e^-4	0.946	INTERGENIC
X	15327586	X_15327586_SNP [dm3] X_15433553_SNP [dm6]	C	G	2.118e^-4	0.946	INTRON Cngl	transposable element FlyBase
X	13216352	X_13216352_SNP [dm3] X_13322319_SNP [dm6]	C	T	2.122e^-4	0.946	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4228231	2L_4228231_SNP [dm3] 2L_4228231_SNP [dm6]	G	A	2.126e^-4	0.946	SYNONYMOUS_CODING RpL40 UPSTREAM CR44608	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3436690	2L_3436690_SNP [dm3] 2L_3436690_SNP [dm6]	G	C	2.131e^-4	0.946	INTERGENIC
3L	8659750	3L_8659750_SNP [dm3] 3L_8666650_SNP [dm6]	C	A	2.146e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	15576376	3L_15576376_SNP [dm3] 3L_15583276_SNP [dm6]	T	G	2.152e^-4	0.946	UTR_3_PRIME CG12301 UPSTREAM CG12304
2R	1671146	2R_1671146_SNP [dm3] 2R_5783641_SNP [dm6]	T	A	2.153e^-4	0.946	UPSTREAM ZnT41F INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	18338069	2R_18338069_SNP [dm3] 2R_22450564_SNP [dm6]	C	A	2.162e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20495785	3R_20495785_SNP [dm3] 3R_24670063_SNP [dm6]	C	T	2.181e^-4	0.946	INTRON slo
3L	12605161	3L_12605161_SNP [dm3] 3L_12612061_SNP [dm6]	G	A	2.195e^-4	0.946	INTRON caup
X	17614152	X_17614152_SNP [dm3] X_17720119_SNP [dm6]	C	A	2.203e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	15042113	2R_15042113_SNP [dm3] 2R_19154608_SNP [dm6]	C	A	2.206e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11551703	3L_11551703_SNP [dm3] 3L_11558603_SNP [dm6]	A	G	2.206e^-4	0.946	SYNONYMOUS_CODING Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3L	4384005	3L_4384005_SNP [dm3] 3L_4384005_SNP [dm6]	A	G	2.238e^-4	0.946	UPSTREAM slow INTERGENIC
3R	12728930	3R_12728930_SNP [dm3] 3R_16903208_SNP [dm6]	A	T	2.255e^-4	0.946	INTRON iab-8
2R	13031658	2R_13031658_SNP [dm3] 2R_17144153_SNP [dm6]	C	T	2.260e^-4	0.946	UPSTREAM snoRNA:U3:54Aa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	18012111	X_18012111_INS [dm3] X_18118078_INS [dm6]	G	GG	2.268e^-4	0.946	INTERGENIC
3L	10483344	3L_10483344_SNP [dm3] 3L_10490244_SNP [dm6]	A	T	2.271e^-4	0.946	UPSTREAM S-Lap4 INTRON A2bp1
3L	16028117	3L_16028117_DEL [dm3] 3L_16035017_DEL [dm6]	TCGAGGCAAT	T	2.280e^-4	0.946	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5462919	2L_5462919_SNP [dm3] 2L_5462919_SNP [dm6]	G	A	2.285e^-4	0.946	INTRON mid
2R	13722898	2R_13722898_SNP [dm3] 2R_17835393_SNP [dm6]	C	A	2.291e^-4	0.946	INTRON grh
2L	2865804	2L_2865804_SNP [dm3] 2L_2865804_SNP [dm6]	T	A	2.313e^-4	0.946	INTRON CG2991
3L	8739722	3L_8739722_SNP [dm3] 3L_8746622_SNP [dm6]	A	G	2.313e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
2L	14578601	2L_14578601_SNP [dm3] 2L_14578601_SNP [dm6]	A	T	2.319e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	17212330	3R_17212330_SNP [dm3] 3R_21386608_SNP [dm6]	T	C	2.320e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3897792	3R_3897792_SNP [dm3] 3R_8072070_SNP [dm6]	A	G	2.324e^-4	0.946	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14750190	2R_14750190_SNP [dm3] 2R_18862685_SNP [dm6]	C	G	2.330e^-4	0.946	UPSTREAM CG43069 & 1 other INTERGENIC
3R	12728957	3R_12728957_SNP [dm3] 3R_16903235_SNP [dm6]	G	T	2.330e^-4	0.946	INTRON iab-8
3L	9177490	3L_9177490_SNP [dm3] 3L_9184390_SNP [dm6]	A	G	2.332e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11389065	2R_11389065_INS [dm3] 2R_15501560_INS [dm6]	G	GT	2.357e^-4	0.946	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
X	19663786	X_19663786_SNP [dm3] X_19769753_SNP [dm6]	C	G	2.380e^-4	0.946	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	17907051	3R_17907051_SNP [dm3] 3R_22081329_SNP [dm6]	A	T	2.384e^-4	0.946	INTRON CG13408	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	12175848	2R_12175848_SNP [dm3] 2R_16288343_SNP [dm6]	A	G	2.395e^-4	0.946	SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CG9068 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11328325	3L_11328325_SNP [dm3] 3L_11335225_SNP [dm6]	C	A	2.404e^-4	0.946	INTERGENIC
3R	22198613	3R_22198613_SNP [dm3] 3R_26372891_SNP [dm6]	A	G	2.408e^-4	0.946	INTERGENIC
3R	22198804	3R_22198804_SNP [dm3] 3R_26373082_SNP [dm6]	C	T	2.408e^-4	0.946	INTERGENIC
3L	4426340	3L_4426340_SNP [dm3] 3L_4426340_SNP [dm6]	T	A	2.409e^-4	0.946	SYNONYMOUS_CODING CG15020
2R	8992631	2R_8992631_SNP [dm3] 2R_13105126_SNP [dm6]	G	A	2.417e^-4	0.946	DOWNSTREAM CG44341 INTERGENIC
2R	17649122	2R_17649122_SNP [dm3] 2R_21761617_SNP [dm6]	T	G	2.420e^-4	0.946	INTERGENIC
2L	4896803	2L_4896803_SNP [dm3] 2L_4896803_SNP [dm6]	C	T	2.422e^-4	0.946	INTRON CG3036
X	2995375	X_2995375_SNP [dm3] X_3101342_SNP [dm6]	T	A	2.443e^-4	0.946	INTRON kirre
3R	17857786	3R_17857786_SNP [dm3] 3R_22032064_SNP [dm6]	G	A	2.446e^-4	0.946	UPSTREAM CG13409 DOWNSTREAM CG6015 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13226861	3L_13226861_SNP [dm3] 3L_13233761_SNP [dm6]	T	A	2.456e^-4	0.946	INTRON caps
X	16878191	X_16878191_DEL [dm3] X_16984158_DEL [dm6]	AG	A	2.461e^-4	0.946	INTRON CG45002
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	2.481e^-4	0.946	INTERGENIC
2L	5068077	2L_5068077_SNP [dm3] 2L_5068077_SNP [dm6]	T	C	2.495e^-4	0.946	SYNONYMOUS_CODING qtc UPSTREAM mir-2495	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9177540	3L_9177540_INS [dm3] 3L_9184440_INS [dm6]	T	TGAACCAAT	2.500e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4908975	3R_4908975_SNP [dm3] 3R_9083253_SNP [dm6]	T	C	2.511e^-4	0.946	INTRON pum
3R	26200416	3R_26200416_SNP [dm3] 3R_30374694_SNP [dm6]	C	A	2.513e^-4	0.946	INTERGENIC
2R	15384981	2R_15384981_DEL [dm3] 2R_19497476_DEL [dm6]	CC	C	2.523e^-4	0.946	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1647793	X_1647793_SNP [dm3] X_1753760_SNP [dm6]	A	C	2.528e^-4	0.946	UTR_5_PRIME Scgdelta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6131054	3L_6131054_SNP [dm3] 3L_6137954_SNP [dm6]	C	A	2.536e^-4	0.946	INTRON Lcp65Ae
3R	22466284	3R_22466284_SNP [dm3] 3R_26640562_SNP [dm6]	C	T	2.543e^-4	0.946	SYNONYMOUS_CODING TwdlD
2L	3042737	2L_3042737_SNP [dm3] 2L_3042737_SNP [dm6]	C	T	2.546e^-4	0.946	SPLICE_SITE_REGION CG17261 START_GAINED CG17261 UTR_5_PRIME CG17261 UPSTREAM CG17261 DOWNSTREAM CG17221
X	4285683	X_4285683_SNP [dm3] X_4391650_SNP [dm6]	G	A	2.569e^-4	0.946	INTRON CR32773	TF binding site mE1_TFBS_sbb
3L	19049029	3L_19049029_SNP [dm3] 3L_19055929_SNP [dm6]	G	A	2.582e^-4	0.946	INTERGENIC
3R	1883320	3R_1883320_SNP [dm3] 3R_6057598_SNP [dm6]	C	T	2.583e^-4	0.946	UPSTREAM CG15580 INTERGENIC
X	20577068	X_20577068_SNP [dm3] X_20706041_SNP [dm6]	C	T	2.583e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	5550618	3L_5550618_SNP [dm3] 3L_5557518_SNP [dm6]	A	C	2.596e^-4	0.946	INTERGENIC
3L	5550622	3L_5550622_SNP [dm3] 3L_5557522_SNP [dm6]	C	T	2.596e^-4	0.946	INTERGENIC
3L	5550630	3L_5550630_DEL [dm3] 3L_5557530_DEL [dm6]	GA	G	2.596e^-4	0.946	INTERGENIC
3L	9661249	3L_9661249_SNP [dm3] 3L_9668149_SNP [dm6]	G	A	2.628e^-4	0.946	SYNONYMOUS_CODING fry
X	16162116	X_16162116_SNP [dm3] X_16268083_SNP [dm6]	C	T	2.629e^-4	0.946	SYNONYMOUS_CODING kat80
X	17606925	X_17606925_SNP [dm3] X_17712892_SNP [dm6]	C	T	2.634e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	2376452	3L_2376452_SNP [dm3] 3L_2376452_SNP [dm6]	T	A	2.648e^-4	0.946	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3R	7218799	3R_7218799_SNP [dm3] 3R_11393077_SNP [dm6]	G	T	2.648e^-4	0.946	UTR_3_PRIME pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7449800	2L_7449800_SNP [dm3] 2L_7449800_SNP [dm6]	A	T	2.663e^-4	0.946	UTR_5_PRIME santa-maria INTRON santa-maria
3R	26038246	3R_26038246_SNP [dm3] 3R_30212524_SNP [dm6]	T	G	2.669e^-4	0.946	UTR_3_PRIME CecA2 UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 1 other
2L	3466443	2L_3466443_SNP [dm3] 2L_3466443_SNP [dm6]	G	T	2.690e^-4	0.946	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5830292	X_5830292_SNP [dm3] X_5936259_SNP [dm6]	C	A	2.694e^-4	0.946	INTRON CG3726
2R	1660075	2R_1660075_DEL [dm3] 2R_5772570_DEL [dm6]	CACGAGAAGTGGTGCGTAAG...	C	2.695e^-4	0.946	UTR_3_PRIME Gp210 DOWNSTREAM Gp210
2L	18543152	2L_18543152_SNP [dm3] 2L_18543152_SNP [dm6]	C	T	2.698e^-4	0.946	INTRON Pde11
X	12434626	X_12434626_DEL [dm3] X_12540593_DEL [dm6]	TTGCGCTTTTCTT...	T	2.715e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	12728915	3R_12728915_SNP [dm3] 3R_16903193_SNP [dm6]	G	C	2.722e^-4	0.946	INTRON iab-8
3R	12728916	3R_12728916_SNP [dm3] 3R_16903194_SNP [dm6]	T	A	2.722e^-4	0.946	INTRON iab-8
3R	12728923	3R_12728923_SNP [dm3] 3R_16903201_SNP [dm6]	A	G	2.722e^-4	0.946	INTRON iab-8
3R	12728926	3R_12728926_SNP [dm3] 3R_16903204_SNP [dm6]	C	A	2.722e^-4	0.946	INTRON iab-8
3R	12728931	3R_12728931_INS [dm3] 3R_16903209_INS [dm6]	T	TGT	2.722e^-4	0.946	INTRON iab-8
3R	12728937	3R_12728937_SNP [dm3] 3R_16903215_SNP [dm6]	A	G	2.722e^-4	0.946	INTRON iab-8
3L	19057128	3L_19057128_INS [dm3] 3L_19064028_INS [dm6]	G	TTCATTCATTCA...	2.727e^-4	0.946	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	11363548	2R_11363548_SNP [dm3] 2R_15476043_SNP [dm6]	G	A	2.762e^-4	0.946	SYNONYMOUS_CODING CG8180
2L	10288350	2L_10288350_SNP [dm3] 2L_10288350_SNP [dm6]	T	C	2.763e^-4	0.946	SYNONYMOUS_CODING CG5604
2L	16332836	2L_16332836_SNP [dm3] 2L_16332836_SNP [dm6]	C	T	2.775e^-4	0.946	NON_SYNONYMOUS_CODING CG31817
X	12434533	X_12434533_SNP [dm3] X_12540500_SNP [dm6]	G	C	2.789e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12434539	X_12434539_SNP [dm3] X_12540506_SNP [dm6]	G	C	2.789e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13942698	3R_13942698_SNP [dm3] 3R_18116976_SNP [dm6]	G	C	2.789e^-4	0.946	INTRON sr
2R	14477213	2R_14477213_SNP [dm3] 2R_18589708_SNP [dm6]	C	A	2.792e^-4	0.946	INTRON GEFmeso
2R	4946084	2R_4946084_DEL [dm3] 2R_9058579_DEL [dm6]	TTCATAGTCAC...	G	2.827e^-4	0.946	INTRON CG13743
X	13690897	X_13690897_SNP [dm3] X_13796864_SNP [dm6]	T	G	2.833e^-4	0.946	NON_SYNONYMOUS_CODING CG10996 INTRON inaE
3L	8618336	3L_8618336_SNP [dm3] 3L_8625236_SNP [dm6]	A	T	2.840e^-4	0.946	UPSTREAM Zasp66 INTRON Zasp66
X	3546772	X_3546772_SNP [dm3] X_3652739_SNP [dm6]	T	C	2.845e^-4	0.946	INTRON AstA-R1
3R	12728934	3R_12728934_SNP [dm3] 3R_16903212_SNP [dm6]	T	G	2.850e^-4	0.946	INTRON iab-8
3R	8437469	3R_8437469_SNP [dm3] 3R_12611747_SNP [dm6]	C	T	2.883e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4669274	3L_4669274_SNP [dm3] 3L_4669274_SNP [dm6]	G	A	2.886e^-4	0.946	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10483334	3L_10483334_SNP [dm3] 3L_10490234_SNP [dm6]	A	C	2.894e^-4	0.946	UPSTREAM S-Lap4 INTRON A2bp1
3L	9661252	3L_9661252_SNP [dm3] 3L_9668152_SNP [dm6]	A	G	2.914e^-4	0.946	SYNONYMOUS_CODING fry
X	17615317	X_17615317_SNP [dm3] X_17721284_SNP [dm6]	T	G	2.920e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	21667826	3L_21667826_SNP [dm3] 3L_21674726_SNP [dm6]	G	A	2.924e^-4	0.946	UTR_3_PRIME CG7158 DOWNSTREAM CG11249	TF binding site mE1_TFBS_cad
3L	19057134	3L_19057134_INS [dm3] 3L_19064034_INS [dm6]	A	ATTT	2.951e^-4	0.946	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	19063026	3L_19063026_SNP [dm3] 3L_19069926_SNP [dm6]	T	C	2.951e^-4	0.946	INTRON Mkp3
3R	12728849	3R_12728849_SNP [dm3] 3R_16903127_SNP [dm6]	C	G	2.957e^-4	0.946	INTRON iab-8
2R	1671191	2R_1671191_SNP [dm3] 2R_5783686_SNP [dm6]	G	C	2.957e^-4	0.946	UPSTREAM ZnT41F INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	6274379	2L_6274379_SNP [dm3] 2L_6274379_SNP [dm6]	C	T	2.971e^-4	0.946	INTRON Ddr
2L	14045221	2L_14045221_SNP [dm3] 2L_14045221_SNP [dm6]	A	C	2.972e^-4	0.946	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12108759	3L_12108759_SNP [dm3] 3L_12115659_SNP [dm6]	A	G	2.973e^-4	0.946	UPSTREAM l_3_j2D3 INTERGENIC
2L	2887886	2L_2887886_SNP [dm3] 2L_2887886_SNP [dm6]	G	C	2.985e^-4	0.946	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
3L	17985940	3L_17985940_SNP [dm3] 3L_17992840_SNP [dm6]	C	T	2.999e^-4	0.946	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4324311	2L_4324311_SNP [dm3] 2L_4324311_SNP [dm6]	G	C	2.999e^-4	0.946	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17204195	2R_17204195_DEL [dm3] 2R_21316690_DEL [dm6]	TT	T	3.007e^-4	0.946	SPLICE_SITE_REGION CG9485 INTRON CG9485	TF binding site mE1_TFBS_cad
3L	9851876	3L_9851876_SNP [dm3] 3L_9858776_SNP [dm6]	A	G	3.034e^-4	0.946	SYNONYMOUS_CODING CG10809	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	10784175	3R_10784175_SNP [dm3] 3R_14958453_SNP [dm6]	G	A	3.035e^-4	0.946	INTERGENIC
2L	2507721	2L_2507721_SNP [dm3] 2L_2507721_SNP [dm6]	T	G	3.042e^-4	0.946	UPSTREAM CR44607 INTERGENIC
3L	19065728	3L_19065728_SNP [dm3] 3L_19072628_SNP [dm6]	C	T	3.059e^-4	0.946	UPSTREAM Mkp3 INTRON Mkp3
3L	13465017	3L_13465017_SNP [dm3] 3L_13471917_SNP [dm6]	T	C	3.066e^-4	0.946	INTRON CG10089
3L	4426380	3L_4426380_SNP [dm3] 3L_4426380_SNP [dm6]	C	A	3.068e^-4	0.946	UTR_3_PRIME CG15020
3L	4748748	3L_4748748_SNP [dm3] 3L_4748748_SNP [dm6]	T	C	3.079e^-4	0.946	INTRON RhoGEF64C
3L	2209187	3L_2209187_DEL [dm3] 3L_2209187_DEL [dm6]	AGGAAATATTA...	A	3.088e^-4	0.946	INTERGENIC
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	3.092e^-4	0.946	INTERGENIC
2L	4151352	2L_4151352_SNP [dm3] 2L_4151352_SNP [dm6]	G	A	3.094e^-4	0.946	DOWNSTREAM CG2955 INTERGENIC
X	17617091	X_17617091_SNP [dm3] X_17723058_SNP [dm6]	T	C	3.099e^-4	0.946	UPSTREAM CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4345905	3R_4345905_SNP [dm3] 3R_8520183_SNP [dm6]	T	C	3.101e^-4	0.946	SYNONYMOUS_CODING CG11737	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4278249	2L_4278249_SNP [dm3] 2L_4278249_SNP [dm6]	C	T	3.110e^-4	0.946	SYNONYMOUS_CODING Art2
X	5281868	X_5281868_SNP [dm3] X_5387835_SNP [dm6]	C	T	3.113e^-4	0.946	INTRON SK
3L	5510321	3L_5510321_INS [dm3] 3L_5517221_INS [dm6]	T	TT	3.124e^-4	0.946	INTRON Lkr
3L	14725124	3L_14725124_SNP [dm3] 3L_14732024_SNP [dm6]	T	A	3.126e^-4	0.946	DOWNSTREAM CG13471 INTRON ome
X	17615174	X_17615174_SNP [dm3] X_17721141_SNP [dm6]	T	C	3.131e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	2961625	3L_2961625_SNP [dm3] 3L_2961625_SNP [dm6]	T	G	3.149e^-4	0.946	START_GAINED Or63a UTR_5_PRIME Or63a UPSTREAM CG34025
3L	9177670	3L_9177670_SNP [dm3] 3L_9184570_SNP [dm6]	G	A	3.183e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4285703	X_4285703_SNP [dm3] X_4391670_SNP [dm6]	C	T	3.183e^-4	0.946	INTRON CR32773
X	5380161	X_5380161_SNP [dm3] X_5486128_SNP [dm6]	G	T	3.194e^-4	0.946	INTRON SPR	TF binding site BDTNP1_TFBS_da
2L	12238962	2L_12238962_SNP [dm3] 2L_12238962_SNP [dm6]	C	A	3.242e^-4	0.946	INTRON aret
2R	10001056	2R_10001056_INS [dm3] 2R_14113551_INS [dm6]	A	AC	3.243e^-4	0.946	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	20900925	2L_20900925_DEL [dm3] 2L_20900925_DEL [dm6]	TTA	T	3.252e^-4	0.946	UPSTREAM CR33317 INTRON sky & 1 other
2R	3857518	2R_3857518_SNP [dm3] 2R_7970013_SNP [dm6]	G	A	3.260e^-4	0.946	SYNONYMOUS_CODING CG8726 DOWNSTREAM nito
3R	20495808	3R_20495808_SNP [dm3] 3R_24670086_SNP [dm6]	G	A	3.265e^-4	0.946	INTRON slo
2R	17118841	2R_17118841_DEL [dm3] 2R_21231336_DEL [dm6]	TT	T	3.291e^-4	0.946	INTRON ASPP
3R	16751282	3R_16751282_DEL [dm3] 3R_20925560_DEL [dm6]	AACGGGCGGCAAAA...	A	3.293e^-4	0.946	INTRON CG31191 & 1 other
3R	16751319	3R_16751319_DEL [dm3] 3R_20925597_DEL [dm6]	TG	T	3.293e^-4	0.946	INTRON CG31191 & 1 other
2R	7998156	2R_7998156_SNP [dm3] 2R_12110651_SNP [dm6]	A	C	3.297e^-4	0.946	INTRON jeb
2R	10001014	2R_10001014_SNP [dm3] 2R_14113509_SNP [dm6]	G	A	3.310e^-4	0.946	INTRON Prosap	TF binding site mE1_TFBS_bab1
X	5579407	X_5579407_SNP [dm3] X_5685374_SNP [dm6]	A	T	3.312e^-4	0.946	UTR_3_PRIME CG3160 DOWNSTREAM CG42449
X	4706881	X_4706881_SNP [dm3] X_4812848_SNP [dm6]	G	A	3.314e^-4	0.946	INTERGENIC
X	2697963	X_2697963_SNP [dm3] X_2803930_SNP [dm6]	G	T	3.322e^-4	0.946	INTRON kirre
3R	26618046	3R_26618046_SNP [dm3] 3R_30792324_SNP [dm6]	T	G	3.345e^-4	0.946	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7563104	2R_7563104_SNP [dm3] 2R_11675599_SNP [dm6]	T	A	3.349e^-4	0.946	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
3R	11376223	3R_11376223_SNP [dm3] 3R_15550501_SNP [dm6]	T	C	3.351e^-4	0.946	NON_SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_sens
3L	2219309	3L_2219309_SNP [dm3] 3L_2219309_SNP [dm6]	A	G	3.362e^-4	0.946	INTERGENIC
X	10277860	X_10277860_SNP [dm3] X_10383827_SNP [dm6]	A	C	3.372e^-4	0.946	UTR_3_PRIME Psf3 DOWNSTREAM Psf3 & 1 other
2R	7994238	2R_7994238_SNP [dm3] 2R_12106733_SNP [dm6]	T	G	3.373e^-4	0.946	INTRON jeb
2L	4709708	2L_4709708_DEL [dm3] 2L_4709708_DEL [dm6]	TCAGGATTACTTT...	T	3.375e^-4	0.946	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3691623	2L_3691623_INS [dm3] 2L_3691623_INS [dm6]	A	AA	3.379e^-4	0.946	UTR_3_PRIME CG34340 DOWNSTREAM CG16704
2R	11082011	2R_11082011_SNP [dm3] 2R_15194506_SNP [dm6]	G	A	3.379e^-4	0.946	UPSTREAM CG43829 INTERGENIC
X	16878100	X_16878100_INS [dm3] X_16984067_INS [dm6]	T	AGTTATAAAAATAAAAAAGC...	3.395e^-4	0.946	INTRON CG45002
2L	4127009	2L_4127009_SNP [dm3] 2L_4127009_SNP [dm6]	T	A	3.399e^-4	0.946	INTERGENIC
3L	20912681	3L_20912681_SNP [dm3] 3L_20919581_SNP [dm6]	T	G	3.402e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16847872	X_16847872_SNP [dm3] X_16953839_SNP [dm6]	T	C	3.431e^-4	0.946	SYNONYMOUS_CODING RhoGAP15B
2L	3466343	2L_3466343_SNP [dm3] 2L_3466343_SNP [dm6]	A	G	3.432e^-4	0.946	SYNONYMOUS_CODING Pdsw UPSTREAM msl-2 DOWNSTREAM CG3238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16163767	X_16163767_SNP [dm3] X_16269734_SNP [dm6]	G	T	3.442e^-4	0.946	INTRON kat80
3R	17726737	3R_17726737_SNP [dm3] 3R_21901015_SNP [dm6]	G	T	3.448e^-4	0.946	INTRON CG6678
2R	8105341	2R_8105341_SNP [dm3] 2R_12217836_SNP [dm6]	G	C	3.460e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5556648	3L_5556648_SNP [dm3] 3L_5563548_SNP [dm6]	G	A	3.465e^-4	0.946	UTR_5_PRIME Sucb UPSTREAM Sras	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	11629844	2R_11629844_SNP [dm3] 2R_15742339_SNP [dm6]	G	T	3.479e^-4	0.946	INTRON CG30089
3L	411629	3L_411629_SNP [dm3] 3L_411629_SNP [dm6]	A	G	3.486e^-4	0.946	INTERGENIC
3L	16859202	3L_16859202_SNP [dm3] 3L_16866102_SNP [dm6]	A	C	3.500e^-4	0.946	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25199346	3R_25199346_SNP [dm3] 3R_29373624_SNP [dm6]	C	T	3.503e^-4	0.946	INTERGENIC
3R	17725537	3R_17725537_SNP [dm3] 3R_21899815_SNP [dm6]	T	G	3.505e^-4	0.946	INTRON CG6678
3L	13182325	3L_13182325_SNP [dm3] 3L_13189225_SNP [dm6]	T	C	3.515e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19015240	X_19015240_SNP [dm3] X_19121207_SNP [dm6]	T	C	3.530e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5128017	2L_5128017_SNP [dm3] 2L_5128017_SNP [dm6]	G	A	3.532e^-4	0.946	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
2R	8000631	2R_8000631_SNP [dm3] 2R_12113126_SNP [dm6]	T	C	3.532e^-4	0.946	INTRON jeb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13513273	2R_13513273_SNP [dm3] 2R_17625768_SNP [dm6]	T	A	3.538e^-4	0.946	INTRON CG10936
2L	1025785	2L_1025785_SNP [dm3] 2L_1025785_SNP [dm6]	G	T	3.551e^-4	0.946	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	17927851	2L_17927851_SNP [dm3] 2L_17927851_SNP [dm6]	A	C	3.561e^-4	0.946	INTERGENIC
2R	15042096	2R_15042096_SNP [dm3] 2R_19154591_SNP [dm6]	A	T	3.577e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_Trl
X	15327537	X_15327537_SNP [dm3] X_15433504_SNP [dm6]	G	T	3.591e^-4	0.946	INTRON Cngl	transposable element FlyBase
X	3216429	X_3216429_SNP [dm3] X_3322396_SNP [dm6]	T	G	3.603e^-4	0.946	INTRON CR44886 & 1 other
X	3216430	X_3216430_SNP [dm3] X_3322397_SNP [dm6]	T	G	3.603e^-4	0.946	INTRON CR44886 & 1 other
3L	19064692	3L_19064692_SNP [dm3] 3L_19071592_SNP [dm6]	A	T	3.609e^-4	0.946	INTRON Mkp3
2L	4226977	2L_4226977_SNP [dm3] 2L_4226977_SNP [dm6]	A	C	3.633e^-4	0.946	UTR_5_PRIME CG3702 UPSTREAM RpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	3466619	2L_3466619_SNP [dm3] 2L_3466619_SNP [dm6]	A	T	3.653e^-4	0.946	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4940164	2R_4940164_SNP [dm3] 2R_9052659_SNP [dm6]	C	T	3.662e^-4	0.946	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	4941013	2R_4941013_SNP [dm3] 2R_9053508_SNP [dm6]	T	C	3.662e^-4	0.946	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15042194	2R_15042194_SNP [dm3] 2R_19154689_SNP [dm6]	C	T	3.663e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	21611537	3L_21611537_SNP [dm3] 3L_21618437_SNP [dm6]	G	T	3.674e^-4	0.946	NON_SYNONYMOUS_CODING CG11307
3L	21618178	3L_21618178_SNP [dm3] 3L_21625078_SNP [dm6]	G	C	3.674e^-4	0.946	UPSTREAM CG11306 INTRON CG7166
2L	17360036	2L_17360036_SNP [dm3] 2L_17360036_SNP [dm6]	T	C	3.678e^-4	0.946	INTERGENIC
3R	22466754	3R_22466754_SNP [dm3] 3R_26641032_SNP [dm6]	G	C	3.681e^-4	0.946	UTR_3_PRIME TwdlD
2R	17591612	2R_17591612_INS [dm3] 2R_21704107_INS [dm6]	C	CC	3.700e^-4	0.946	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17613995	X_17613995_INS [dm3] X_17719962_INS [dm6]	T	TT	3.706e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	16878197	X_16878197_SNP [dm3] X_16984164_SNP [dm6]	A	T	3.709e^-4	0.946	INTRON CG45002
3L	2082383	3L_2082383_SNP [dm3] 3L_2082383_SNP [dm6]	C	T	3.726e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls
X	17614151	X_17614151_SNP [dm3] X_17720118_SNP [dm6]	G	A	3.728e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	4149603	2L_4149603_SNP [dm3] 2L_4149603_SNP [dm6]	T	C	3.729e^-4	0.946	SYNONYMOUS_CODING CG2955
2R	10569992	2R_10569992_SNP [dm3] 2R_14682487_SNP [dm6]	T	A	3.736e^-4	0.946	INTRON mspo
3L	19065415	3L_19065415_DEL [dm3] 3L_19072315_DEL [dm6]	GC	G	3.737e^-4	0.946	INTRON Mkp3
3L	19065722	3L_19065722_DEL [dm3] 3L_19072622_DEL [dm6]	GG	G	3.737e^-4	0.946	UPSTREAM Mkp3 INTRON Mkp3
2R	12175652	2R_12175652_SNP [dm3] 2R_16288147_SNP [dm6]	A	G	3.738e^-4	0.946	UTR_5_PRIME CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2765973	2R_2765973_SNP [dm3] 2R_6878468_SNP [dm6]	C	G	3.740e^-4	0.946	UTR_5_PRIME Spn42Da DOWNSTREAM Spn42Db INTRON CR44169 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12812543	2L_12812543_SNP [dm3] 2L_12812543_SNP [dm6]	C	G	3.745e^-4	0.946	INTERGENIC
2R	10003254	2R_10003254_SNP [dm3] 2R_14115749_SNP [dm6]	T	C	3.753e^-4	0.946	INTRON Prosap
3L	10725720	3L_10725720_INS [dm3] 3L_10732620_INS [dm6]	A	ACTGATTTGTA...	3.783e^-4	0.946	INTERGENIC
X	20494221	X_20494221_SNP [dm3] X_20623194_SNP [dm6]	C	T	3.785e^-4	0.946	UTR_5_PRIME RunxA	TF binding site BDTNP1_TFBS_twi
3L	17933779	3L_17933779_SNP [dm3] 3L_17940679_SNP [dm6]	G	T	3.786e^-4	0.946	INTRON CG43174
2R	8000671	2R_8000671_SNP [dm3] 2R_12113166_SNP [dm6]	C	A	3.793e^-4	0.946	INTRON jeb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3676605	3L_3676605_SNP [dm3] 3L_3676605_SNP [dm6]	A	T	3.794e^-4	0.946	INTERGENIC
2L	3735069	2L_3735069_SNP [dm3] 2L_3735069_SNP [dm6]	T	C	3.799e^-4	0.946	INTRON CG10019
3R	6572495	3R_6572495_SNP [dm3] 3R_10746773_SNP [dm6]	C	A	3.800e^-4	0.946	INTRON TkR86C
2L	17950701	2L_17950701_DEL [dm3] 2L_17950701_DEL [dm6]	ACCACGA	A	3.806e^-4	0.946	INTRON CR44398 EXON CR44397
3L	9525019	3L_9525019_SNP [dm3] 3L_9531919_SNP [dm6]	T	G	3.816e^-4	0.946	DOWNSTREAM Or67a INTERGENIC
3L	4643255	3L_4643255_SNP [dm3] 3L_4643255_SNP [dm6]	C	T	3.838e^-4	0.946	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12257316	3R_12257316_SNP [dm3] 3R_16431594_SNP [dm6]	A	G	3.849e^-4	0.946	NON_SYNONYMOUS_CODING CG31279 UPSTREAM tRNA:CR31282 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	18114802	2L_18114802_SNP [dm3] 2L_18114802_SNP [dm6]	T	C	3.869e^-4	0.946	SYNONYMOUS_CODING CG15152
X	16878187	X_16878187_SNP [dm3] X_16984154_SNP [dm6]	A	G	3.876e^-4	0.946	INTRON CG45002
X	16878189	X_16878189_SNP [dm3] X_16984156_SNP [dm6]	A	T	3.876e^-4	0.946	INTRON CG45002
3L	5510561	3L_5510561_SNP [dm3] 3L_5517461_SNP [dm6]	G	A	3.878e^-4	0.946	INTRON Lkr
2R	6330487	2R_6330487_SNP [dm3] 2R_10442982_SNP [dm6]	T	C	3.880e^-4	0.946	INTRON Galphao
2L	14078075	2L_14078075_SNP [dm3] 2L_14078075_SNP [dm6]	A	T	3.890e^-4	0.946	INTRON nAChRalpha5
X	17433254	X_17433254_SNP [dm3] X_17539221_SNP [dm6]	G	T	3.903e^-4	0.946	INTRON CG43658
X	4979569	X_4979569_DEL [dm3] X_5085536_DEL [dm6]	ATAAAAAGT	A	3.903e^-4	0.946	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15042244	2R_15042244_SNP [dm3] 2R_19154739_SNP [dm6]	T	A	3.909e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8287755	3L_8287755_SNP [dm3] 3L_8294655_SNP [dm6]	A	C	3.915e^-4	0.946	INTRON CG7201
3L	19062494	3L_19062494_SNP [dm3] 3L_19069394_SNP [dm6]	A	C	3.931e^-4	0.946	INTRON Mkp3	TF binding site mE1_TFBS_cad
X	16163144	X_16163144_SNP [dm3] X_16269111_SNP [dm6]	G	A	3.931e^-4	0.946	SYNONYMOUS_CODING kat80
2R	19207318	2R_19207318_SNP [dm3] 2R_23319795_SNP [dm6]	C	T	3.933e^-4	0.946	UPSTREAM CG30412 INTERGENIC
3L	11328304	3L_11328304_SNP [dm3] 3L_11335204_SNP [dm6]	A	G	3.937e^-4	0.946	INTERGENIC
X	12415217	X_12415217_DEL [dm3] X_12521184_DEL [dm6]	ATTCTGA	A	3.939e^-4	0.946	CODON_DELETION CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12081718	3L_12081718_SNP [dm3] 3L_12088618_SNP [dm6]	T	A	3.944e^-4	0.946	UPSTREAM CG17154 INTERGENIC	TF binding site mE1_TFBS_inv
2R	17977835	2R_17977835_SNP [dm3] 2R_22090330_SNP [dm6]	T	A	3.959e^-4	0.946	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163
2R	19459669	2R_19459669_SNP [dm3] 2R_23572146_SNP [dm6]	T	C	3.969e^-4	0.946	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8000645	2R_8000645_SNP [dm3] 2R_12113140_SNP [dm6]	G	A	3.984e^-4	0.946	INTRON jeb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14829975	3R_14829975_SNP [dm3] 3R_19004253_SNP [dm6]	T	C	3.998e^-4	0.946	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9340927	3L_9340927_SNP [dm3] 3L_9347827_SNP [dm6]	C	T	4.012e^-4	0.946	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
2L	9678992	2L_9678992_SNP [dm3] 2L_9678992_SNP [dm6]	G	A	4.022e^-4	0.946	INTERGENIC
3R	22198747	3R_22198747_INS [dm3] 3R_26373025_INS [dm6]	T	TTCGC	4.031e^-4	0.946	INTERGENIC
2L	18113951	2L_18113951_SNP [dm3] 2L_18113951_SNP [dm6]	G	A	4.052e^-4	0.946	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	11081503	2R_11081503_SNP [dm3] 2R_15193998_SNP [dm6]	G	A	4.078e^-4	0.946	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
3L	19063066	3L_19063066_SNP [dm3] 3L_19069966_SNP [dm6]	A	G	4.087e^-4	0.946	INTRON Mkp3
3R	12728851	3R_12728851_DEL [dm3] 3R_16903129_DEL [dm6]	ACACAT	A	4.092e^-4	0.946	INTRON iab-8
3R	12728861	3R_12728861_DEL [dm3] 3R_16903139_DEL [dm6]	TGGAACAT	T	4.092e^-4	0.946	INTRON iab-8
3R	12728879	3R_12728879_DEL [dm3] 3R_16903157_DEL [dm6]	ATTGA	T	4.092e^-4	0.946	INTRON iab-8
2R	8103588	2R_8103588_SNP [dm3] 2R_12216083_SNP [dm6]	T	A	4.099e^-4	0.946	INTERGENIC
3R	9423775	3R_9423775_SNP [dm3] 3R_13598053_SNP [dm6]	T	C	4.115e^-4	0.946	INTERGENIC
2L	18004716	2L_18004716_SNP [dm3] 2L_18004716_SNP [dm6]	C	G	4.140e^-4	0.946	INTERGENIC
3R	25091052	3R_25091052_SNP [dm3] 3R_29265330_SNP [dm6]	C	T	4.141e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25091095	3R_25091095_SNP [dm3] 3R_29265373_SNP [dm6]	G	C	4.141e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7068267	2R_7068267_INS [dm3] 2R_11180762_INS [dm6]	T	TTTCAT	4.152e^-4	0.946	INTRON shn
2L	12534190	2L_12534190_SNP [dm3] 2L_12534190_SNP [dm6]	T	G	4.169e^-4	0.946	INTRON bun
3L	11131542	3L_11131542_SNP [dm3] 3L_11138442_SNP [dm6]	T	G	4.187e^-4	0.946	INTRON CG32082
2L	17975903	2L_17975903_SNP [dm3] 2L_17975903_SNP [dm6]	A	C	4.193e^-4	0.946	INTRON btv
2R	6807466	2R_6807466_SNP [dm3] 2R_10919961_SNP [dm6]	A	C	4.214e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_inv
X	8639103	X_8639103_SNP [dm3] X_8745070_SNP [dm6]	A	G	4.271e^-4	0.946	INTERGENIC
2R	11353938	2R_11353938_SNP [dm3] 2R_15466433_SNP [dm6]	T	A	4.287e^-4	0.946	INTRON CG43729
X	10979565	X_10979565_SNP [dm3] X_11085532_SNP [dm6]	C	T	4.288e^-4	0.946	INTRON sev
X	10979566	X_10979566_SNP [dm3] X_11085533_SNP [dm6]	A	T	4.288e^-4	0.946	INTRON sev
X	10979568	X_10979568_SNP [dm3] X_11085535_SNP [dm6]	A	T	4.288e^-4	0.946	INTRON sev
2R	18670052	2R_18670052_SNP [dm3] 2R_22782547_SNP [dm6]	T	C	4.304e^-4	0.946	INTRON CG42260
2L	3466557	2L_3466557_SNP [dm3] 2L_3466557_SNP [dm6]	T	G	4.332e^-4	0.946	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27678872	3R_27678872_SNP [dm3] 3R_31853150_SNP [dm6]	C	T	4.336e^-4	0.946	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8708609	X_8708609_SNP [dm3] X_8814576_SNP [dm6]	A	C	4.339e^-4	0.946	INTERGENIC
3L	17995953	3L_17995953_SNP [dm3] 3L_18002853_SNP [dm6]	T	C	4.349e^-4	0.946	DOWNSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	22866780	3R_22866780_SNP [dm3] 3R_27041058_SNP [dm6]	A	T	4.349e^-4	0.946	INTRON RYa-R
3L	5565895	3L_5565895_SNP [dm3] 3L_5572795_SNP [dm6]	G	A	4.365e^-4	0.946	INTRON Msr-110
2L	14840259	2L_14840259_DEL [dm3] 2L_14840259_DEL [dm6]	ATAGTTG	C	4.373e^-4	0.946	DOWNSTREAM CR43805 INTERGENIC
3R	10149030	3R_10149030_SNP [dm3] 3R_14323308_SNP [dm6]	A	G	4.384e^-4	0.946	INTRON Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4111732	X_4111732_SNP [dm3] X_4217699_SNP [dm6]	A	C	4.400e^-4	0.946	UPSTREAM CG15570 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12331969	3R_12331969_SNP [dm3] 3R_16506247_SNP [dm6]	A	G	4.407e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15443294	3L_15443294_SNP [dm3] 3L_15450194_SNP [dm6]	G	A	4.414e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
X	531223	X_531223_SNP [dm3] X_637190_SNP [dm6]	C	T	4.450e^-4	0.946	INTRON su_s_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	552118	X_552118_SNP [dm3] X_658085_SNP [dm6]	C	T	4.450e^-4	0.946	DOWNSTREAM skpA INTERGENIC
3L	1236163	3L_1236163_SNP [dm3] 3L_1236163_SNP [dm6]	G	T	4.468e^-4	0.946	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_Trl
2R	17653133	2R_17653133_SNP [dm3] 2R_21765628_SNP [dm6]	A	G	4.475e^-4	0.946	SYNONYMOUS_CODING CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
X	6535072	X_6535072_SNP [dm3] X_6641039_SNP [dm6]	G	T	4.482e^-4	0.946	INTRON pigs
2R	11284944	2R_11284944_SNP [dm3] 2R_15397439_SNP [dm6]	G	A	4.488e^-4	0.946	INTERGENIC
2L	3907478	2L_3907478_SNP [dm3] 2L_3907478_SNP [dm6]	T	A	4.490e^-4	0.946	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15835409	2R_15835409_SNP [dm3] 2R_19947904_SNP [dm6]	G	A	4.504e^-4	0.946	UTR_3_PRIME CG30447
3L	18542266	3L_18542266_SNP [dm3] 3L_18549166_SNP [dm6]	C	T	4.516e^-4	0.946	INTERGENIC
3L	9339782	3L_9339782_SNP [dm3] 3L_9346682_SNP [dm6]	A	C	4.529e^-4	0.946	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	9339783	3L_9339783_SNP [dm3] 3L_9346683_SNP [dm6]	T	C	4.529e^-4	0.946	NON_SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	17933746	3L_17933746_DEL [dm3] 3L_17940646_DEL [dm6]	GTATC	A	4.539e^-4	0.946	INTRON CG43174
3L	17933762	3L_17933762_SNP [dm3] 3L_17940662_SNP [dm6]	G	A	4.539e^-4	0.946	INTRON CG43174
3L	17933786	3L_17933786_SNP [dm3] 3L_17940686_SNP [dm6]	C	T	4.539e^-4	0.946	INTRON CG43174
2L	6128608	2L_6128608_SNP [dm3] 2L_6128608_SNP [dm6]	A	G	4.542e^-4	0.946	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22054653	X_22054653_SNP [dm3] X_22652817_SNP [dm6]	G	A	4.548e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5994500	3R_5994500_SNP [dm3] 3R_10168778_SNP [dm6]	A	G	4.551e^-4	0.946	INTRON Best1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
2L	13015173	2L_13015173_SNP [dm3] 2L_13015173_SNP [dm6]	A	G	4.553e^-4	0.946	SYNONYMOUS_CODING CG9934
3L	3114562	3L_3114562_SNP [dm3] 3L_3114562_SNP [dm6]	C	G	4.561e^-4	0.946	UTR_3_PRIME prominin-like UPSTREAM CG45067 DOWNSTREAM prominin-like
3L	10725700	3L_10725700_SNP [dm3] 3L_10732600_SNP [dm6]	T	A	4.583e^-4	0.946	INTERGENIC
3L	10725710	3L_10725710_SNP [dm3] 3L_10732610_SNP [dm6]	T	C	4.583e^-4	0.946	INTERGENIC
3R	22466645	3R_22466645_SNP [dm3] 3R_26640923_SNP [dm6]	G	A	4.603e^-4	0.946	UTR_3_PRIME TwdlD
2L	17991644	2L_17991644_SNP [dm3] 2L_17991644_SNP [dm6]	G	A	4.608e^-4	0.946	UTR_3_PRIME Prosbeta5R2 DOWNSTREAM Prosbeta5R2
2R	12175729	2R_12175729_SNP [dm3] 2R_16288224_SNP [dm6]	T	G	4.619e^-4	0.946	UTR_5_PRIME CG30324 UTR_3_PRIME CG30099 DOWNSTREAM CG9068 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12331007	3R_12331007_SNP [dm3] 3R_16505285_SNP [dm6]	A	G	4.627e^-4	0.946	INTRON CG42342
2L	1962577	2L_1962577_SNP [dm3] 2L_1962577_SNP [dm6]	T	A	4.630e^-4	0.946	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17134709	3L_17134709_SNP [dm3] 3L_17141609_SNP [dm6]	A	G	4.636e^-4	0.946	INTRON Rbp6
2L	14448187	2L_14448187_SNP [dm3] 2L_14448187_SNP [dm6]	C	T	4.642e^-4	0.946	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14477068	2R_14477068_DEL [dm3] 2R_18589563_DEL [dm6]	TT	T	4.651e^-4	0.946	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
2L	13888715	2L_13888715_SNP [dm3] 2L_13888715_SNP [dm6]	G	A	4.657e^-4	0.946	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20219875	3L_20219875_SNP [dm3] 3L_20226775_SNP [dm6]	C	A	4.662e^-4	0.946	SPLICE_SITE_REGION Su_var_3-3 UTR_5_PRIME Su_var_3-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22198697	3R_22198697_SNP [dm3] 3R_26372975_SNP [dm6]	A	T	4.681e^-4	0.946	INTERGENIC
3R	22198708	3R_22198708_SNP [dm3] 3R_26372986_SNP [dm6]	C	T	4.681e^-4	0.946	INTERGENIC
3L	21632107	3L_21632107_SNP [dm3] 3L_21639007_SNP [dm6]	A	T	4.685e^-4	0.946	UTR_3_PRIME CG32444 UPSTREAM CG32445
3R	9990842	3R_9990842_SNP [dm3] 3R_14165120_SNP [dm6]	T	C	4.706e^-4	0.946	DOWNSTREAM Dop1R1 INTERGENIC
3L	13059536	3L_13059536_SNP [dm3] 3L_13066436_SNP [dm6]	T	G	4.710e^-4	0.946	INTERGENIC
3L	5558415	3L_5558415_SNP [dm3] 3L_5565315_SNP [dm6]	G	A	4.711e^-4	0.946	UTR_5_PRIME bc10 DOWNSTREAM Sras	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2219180	3L_2219180_SNP [dm3] 3L_2219180_SNP [dm6]	C	A	4.726e^-4	0.946	INTERGENIC
3R	25091020	3R_25091020_SNP [dm3] 3R_29265298_SNP [dm6]	T	C	4.729e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18158652	2R_18158652_SNP [dm3] 2R_22271147_SNP [dm6]	T	C	4.737e^-4	0.946	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6390741	3L_6390741_SNP [dm3] 3L_6397641_SNP [dm6]	C	T	4.750e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17614578	X_17614578_SNP [dm3] X_17720545_SNP [dm6]	A	C	4.756e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4939121	2R_4939121_SNP [dm3] 2R_9051616_SNP [dm6]	T	A	4.756e^-4	0.946	INTRON CG13743
3R	3887843	3R_3887843_SNP [dm3] 3R_8062121_SNP [dm6]	G	T	4.759e^-4	0.946	INTRON mAChR-B	TF binding site mE1_TFBS_inv
3L	18310267	3L_18310267_SNP [dm3] 3L_18317167_SNP [dm6]	C	A	4.768e^-4	0.946	INTERGENIC
3R	8642417	3R_8642417_SNP [dm3] 3R_12816695_SNP [dm6]	T	G	4.792e^-4	0.946	INTRON CG31345
2R	18857662	2R_18857662_SNP [dm3] 2R_22970139_SNP [dm6]	G	C	4.797e^-4	0.946	INTERGENIC
2L	10310020	2L_10310020_SNP [dm3] 2L_10310020_SNP [dm6]	T	C	4.809e^-4	0.946	SYNONYMOUS_CODING Cdk5alpha
3L	12866170	3L_12866170_SNP [dm3] 3L_12873070_SNP [dm6]	G	A	4.810e^-4	0.946	INTERGENIC
2R	11635692	2R_11635692_SNP [dm3] 2R_15748187_SNP [dm6]	T	C	4.814e^-4	0.946	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6778663	3L_6778663_SNP [dm3] 3L_6785563_SNP [dm6]	A	G	4.818e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	6128609	2L_6128609_SNP [dm3] 2L_6128609_SNP [dm6]	G	A	4.830e^-4	0.946	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2375516	3L_2375516_SNP [dm3] 3L_2375516_SNP [dm6]	G	A	4.835e^-4	0.946	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
2R	11393477	2R_11393477_SNP [dm3] 2R_15505972_SNP [dm6]	A	T	4.836e^-4	0.946	NON_SYNONYMOUS_CODING Ir52c UPSTREAM Ir52d
2R	11393577	2R_11393577_SNP [dm3] 2R_15506072_SNP [dm6]	C	T	4.836e^-4	0.946	UPSTREAM Ir52d DOWNSTREAM Ir52c INTERGENIC
2R	11393695	2R_11393695_SNP [dm3] 2R_15506190_SNP [dm6]	C	T	4.836e^-4	0.946	UPSTREAM Ir52d DOWNSTREAM Ir52c INTERGENIC
2R	11393753	2R_11393753_SNP [dm3] 2R_15506248_SNP [dm6]	G	A	4.836e^-4	0.946	UPSTREAM Ir52d DOWNSTREAM Ir52c INTERGENIC
3L	11237566	3L_11237566_SNP [dm3] 3L_11244466_SNP [dm6]	T	C	4.842e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	3703094	2L_3703094_SNP [dm3] 2L_3703094_SNP [dm6]	A	C	4.847e^-4	0.946	UPSTREAM CG2816 DOWNSTREAM CG43145 & 1 other INTERGENIC
3R	14199914	3R_14199914_SNP [dm3] 3R_18374192_SNP [dm6]	C	T	4.854e^-4	0.946	UPSTREAM CR44946 DOWNSTREAM CG14310 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18737959	3R_18737959_SNP [dm3] 3R_22912237_SNP [dm6]	T	C	4.858e^-4	0.946	INTRON klg
3R	26464996	3R_26464996_SNP [dm3] 3R_30639274_SNP [dm6]	T	A	4.864e^-4	0.946	INTERGENIC
3R	4355005	3R_4355005_SNP [dm3] 3R_8529283_SNP [dm6]	A	T	4.876e^-4	0.946	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	11859865	2L_11859865_SNP [dm3] 2L_11859865_SNP [dm6]	T	A	4.878e^-4	0.946	INTRON Pde1c
3L	967586	3L_967586_SNP [dm3] 3L_967586_SNP [dm6]	C	T	4.901e^-4	0.946	INTRON Glut1
3L	5550053	3L_5550053_SNP [dm3] 3L_5556953_SNP [dm6]	T	C	4.910e^-4	0.946	INTERGENIC
3R	17725686	3R_17725686_SNP [dm3] 3R_21899964_SNP [dm6]	T	C	4.912e^-4	0.946	INTRON CG6678
3L	4224908	3L_4224908_SNP [dm3] 3L_4224908_SNP [dm6]	C	T	4.921e^-4	0.946	DOWNSTREAM CG43367 INTRON ImpL2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	13029623	3L_13029623_SNP [dm3] 3L_13036523_SNP [dm6]	C	A	4.922e^-4	0.946	UPSTREAM SRm160 DOWNSTREAM CG17672 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	7068260	2R_7068260_SNP [dm3] 2R_11180755_SNP [dm6]	C	T	4.926e^-4	0.946	INTRON shn
2L	17142669	2L_17142669_SNP [dm3] 2L_17142669_SNP [dm6]	G	A	4.927e^-4	0.946	INTRON beat-IIIa & 1 other
2L	11007571	2L_11007571_SNP [dm3] 2L_11007571_SNP [dm6]	G	A	4.943e^-4	0.946	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA
3L	6940893	3L_6940893_SNP [dm3] 3L_6947793_SNP [dm6]	T	C	4.949e^-4	0.946	SYNONYMOUS_CODING tow
3L	12470408	3L_12470408_SNP [dm3] 3L_12477308_SNP [dm6]	G	A	4.957e^-4	0.946	INTRON CG10663
3L	10483365	3L_10483365_DEL [dm3] 3L_10490265_DEL [dm6]	ACA	GT	4.979e^-4	0.946	UPSTREAM S-Lap4 INTRON A2bp1
3R	12728894	3R_12728894_SNP [dm3] 3R_16903172_SNP [dm6]	G	A	4.982e^-4	0.946	INTRON iab-8
3L	5888766	3L_5888766_SNP [dm3] 3L_5895666_SNP [dm6]	T	A	4.983e^-4	0.946	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14401207	3R_14401207_SNP [dm3] 3R_18575485_SNP [dm6]	A	T	4.983e^-4	0.946	INTRON CG7694 & 1 other
X	14524715	X_14524715_SNP [dm3] X_14630682_SNP [dm6]	G	A	4.990e^-4	0.946	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16740002	2R_16740002_SNP [dm3] 2R_20852497_SNP [dm6]	C	T	4.999e^-4	0.946	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11082022	2R_11082022_SNP [dm3] 2R_15194517_SNP [dm6]	C	T	5.000e^-4	0.946	UPSTREAM CG43829 INTERGENIC
2R	18901880	2R_18901880_SNP [dm3] 2R_23014357_SNP [dm6]	A	C	5.006e^-4	0.946	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
3R	24202072	3R_24202072_SNP [dm3] 3R_28376350_SNP [dm6]	C	A	5.006e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	15064341	2L_15064341_DEL [dm3] 2L_15064341_DEL [dm6]	AGTTTTCA	A	5.014e^-4	0.946	UTR_3_PRIME vig INTRON vas
X	5950566	X_5950566_SNP [dm3] X_6056533_SNP [dm6]	T	C	5.024e^-4	0.946	INTRON CG5921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20129534	3R_20129534_SNP [dm3] 3R_24303812_SNP [dm6]	G	T	5.030e^-4	0.946	INTRON crb
X	4111153	X_4111153_SNP [dm3] X_4217120_SNP [dm6]	T	C	5.037e^-4	0.946	SYNONYMOUS_CODING CG15571
2L	9941063	2L_9941063_SNP [dm3] 2L_9941063_SNP [dm6]	A	G	5.040e^-4	0.946	UTR_3_PRIME CG4619 DOWNSTREAM CG4619 INTRON CG5853
2R	9570573	2R_9570573_SNP [dm3] 2R_13683068_SNP [dm6]	A	C	5.054e^-4	0.946	INTRON fas
2R	10346150	2R_10346150_SNP [dm3] 2R_14458645_SNP [dm6]	G	A	5.059e^-4	0.946	START_GAINED Oaz UTR_5_PRIME Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18005112	2L_18005112_SNP [dm3] 2L_18005112_SNP [dm6]	G	T	5.062e^-4	0.946	INTERGENIC
3L	9525021	3L_9525021_SNP [dm3] 3L_9531921_SNP [dm6]	G	A	5.069e^-4	0.946	DOWNSTREAM Or67a INTERGENIC
3R	7126629	3R_7126629_SNP [dm3] 3R_11300907_SNP [dm6]	C	G	5.079e^-4	0.946	INTRON CR31386	TF binding site mE1_TFBS_chinmo
2R	12728719	2R_12728719_SNP [dm3] 2R_16841214_SNP [dm6]	C	T	5.082e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12096016	3L_12096016_SNP [dm3] 3L_12102916_SNP [dm6]	A	C	5.088e^-4	0.946	INTERGENIC
3L	12096017	3L_12096017_SNP [dm3] 3L_12102917_SNP [dm6]	A	C	5.088e^-4	0.946	INTERGENIC
2R	15533526	2R_15533526_SNP [dm3] 2R_19646021_SNP [dm6]	G	T	5.105e^-4	0.946	DOWNSTREAM CG15905 INTERGENIC
2R	19493101	2R_19493101_SNP [dm3] 2R_23605578_SNP [dm6]	C	G	5.122e^-4	0.946	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
2R	7995313	2R_7995313_SNP [dm3] 2R_12107808_SNP [dm6]	G	T	5.148e^-4	0.946	INTRON jeb
3R	19225794	3R_19225794_SNP [dm3] 3R_23400072_SNP [dm6]	G	A	5.150e^-4	0.946	UPSTREAM CR44323 INTERGENIC
X	17243971	X_17243971_SNP [dm3] X_17349938_SNP [dm6]	C	T	5.153e^-4	0.946	INTERGENIC
3L	3097468	3L_3097468_SNP [dm3] 3L_3097468_SNP [dm6]	C	G	5.161e^-4	0.946	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32285 INTRON Cht7
X	20575441	X_20575441_SNP [dm3] X_20704414_SNP [dm6]	G	A	5.172e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
2R	12175773	2R_12175773_SNP [dm3] 2R_16288268_SNP [dm6]	A	G	5.181e^-4	0.946	UTR_3_PRIME CG30099 UPSTREAM CG30324 DOWNSTREAM CG9068 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20021191	2R_20021191_SNP [dm3] 2R_24133668_SNP [dm6]	G	A	5.185e^-4	0.946	UPSTREAM Zfrp8 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	12434570	X_12434570_SNP [dm3] X_12540537_SNP [dm6]	T	A	5.193e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8002606	2R_8002606_SNP [dm3] 2R_12115101_SNP [dm6]	C	G	5.194e^-4	0.946	INTRON jeb
X	19932354	X_19932354_SNP [dm3] X_20038321_SNP [dm6]	C	G	5.195e^-4	0.946	INTRON Dop2R
3L	1036105	3L_1036105_SNP [dm3] 3L_1036105_SNP [dm6]	T	C	5.204e^-4	0.946	SYNONYMOUS_CODING CG9205 DOWNSTREAM bab1	TF binding site mE1_TFBS_sens
X	2180190	X_2180190_SNP [dm3] X_2286157_SNP [dm6]	C	T	5.214e^-4	0.946	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18542157	3L_18542157_SNP [dm3] 3L_18549057_SNP [dm6]	C	G	5.216e^-4	0.946	INTERGENIC
3L	18542164	3L_18542164_SNP [dm3] 3L_18549064_SNP [dm6]	A	T	5.216e^-4	0.946	INTERGENIC
3L	19056521	3L_19056521_SNP [dm3] 3L_19063421_SNP [dm6]	A	C	5.217e^-4	0.946	UTR_5_PRIME CG6812 UPSTREAM CG3797	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	12145734	2L_12145734_SNP [dm3] 2L_12145734_SNP [dm6]	G	C	5.239e^-4	0.946	INTRON CG31760	insulator Insulator_Class_II.mE01
X	11588139	X_11588139_SNP [dm3] X_11694106_SNP [dm6]	C	G	5.258e^-4	0.946	UTR_3_PRIME bif	TF binding site BDTNP1_TFBS_dl
X	11588152	X_11588152_SNP [dm3] X_11694119_SNP [dm6]	A	T	5.258e^-4	0.946	UTR_3_PRIME bif	TF binding site BDTNP1_TFBS_dl
3L	2958778	3L_2958778_SNP [dm3] 3L_2958778_SNP [dm6]	C	T	5.267e^-4	0.946	UTR_3_PRIME Shab DOWNSTREAM CG34025
X	719397	X_719397_SNP [dm3] X_825364_SNP [dm6]	G	A	5.287e^-4	0.946	INTRON CG43867	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	3930327	2R_3930327_INS [dm3] 2R_8042822_INS [dm6]	T	TG	5.291e^-4	0.946	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
2L	5098641	2L_5098641_SNP [dm3] 2L_5098641_SNP [dm6]	T	G	5.305e^-4	0.946	UTR_3_PRIME CG4230 DOWNSTREAM CG8680 & 1 other
X	4862284	X_4862284_SNP [dm3] X_4968251_SNP [dm6]	A	T	5.306e^-4	0.946	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16713507	2R_16713507_DEL [dm3] 2R_20826002_DEL [dm6]	GG	G	5.312e^-4	0.946	INTRON insc
2R	11405203	2R_11405203_SNP [dm3] 2R_15517698_SNP [dm6]	G	A	5.332e^-4	0.946	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
2R	11405239	2R_11405239_SNP [dm3] 2R_15517734_SNP [dm6]	T	A	5.332e^-4	0.946	UTR_3_PRIME Khc-73
3L	10483594	3L_10483594_SNP [dm3] 3L_10490494_SNP [dm6]	C	T	5.339e^-4	0.946	UPSTREAM S-Lap4 INTRON A2bp1
3L	10319290	3L_10319290_SNP [dm3] 3L_10326190_SNP [dm6]	C	T	5.349e^-4	0.946	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	9688204	3R_9688204_SNP [dm3] 3R_13862482_SNP [dm6]	G	C	5.360e^-4	0.946	INTERGENIC
2R	8551997	2R_8551997_SNP [dm3] 2R_12664492_SNP [dm6]	C	T	5.362e^-4	0.946	INTRON nemy
3L	8368558	3L_8368558_SNP [dm3] 3L_8375458_SNP [dm6]	G	T	5.367e^-4	0.946	INTRON ImpE1
3R	12728924	3R_12728924_SNP [dm3] 3R_16903202_SNP [dm6]	A	G	5.368e^-4	0.946	INTRON iab-8
3R	12728939	3R_12728939_SNP [dm3] 3R_16903217_SNP [dm6]	G	A	5.368e^-4	0.946	INTRON iab-8
3R	4774869	3R_4774869_SNP [dm3] 3R_8949147_SNP [dm6]	T	C	5.369e^-4	0.946	INTERGENIC
2R	17118851	2R_17118851_SNP [dm3] 2R_21231346_SNP [dm6]	A	G	5.370e^-4	0.946	INTRON ASPP
2R	15124938	2R_15124938_SNP [dm3] 2R_19237433_SNP [dm6]	C	A	5.382e^-4	0.946	NON_SYNONYMOUS_CODING cora INTRON cora
3L	11131359	3L_11131359_SNP [dm3] 3L_11138259_SNP [dm6]	G	T	5.395e^-4	0.946	INTRON CG32082
X	16163445	X_16163445_DEL [dm3] X_16269412_DEL [dm6]	TTGGTTTTTCA...	T	5.422e^-4	0.946	INTRON kat80
3L	11551722	3L_11551722_SNP [dm3] 3L_11558622_SNP [dm6]	A	T	5.431e^-4	0.946	SYNONYMOUS_CODING Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
X	5613179	X_5613179_SNP [dm3] X_5719146_SNP [dm6]	C	G	5.432e^-4	0.946	DOWNSTREAM CG32758 INTERGENIC
2L	4372897	2L_4372897_SNP [dm3] 2L_4372897_SNP [dm6]	C	T	5.432e^-4	0.946	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16820708	3L_16820708_SNP [dm3] 3L_16827608_SNP [dm6]	G	A	5.433e^-4	0.946	INTRON CG13024
3R	22866779	3R_22866779_SNP [dm3] 3R_27041057_SNP [dm6]	G	T	5.438e^-4	0.946	INTRON RYa-R
3R	14779627	3R_14779627_DEL [dm3] 3R_18953905_DEL [dm6]	AA	A	5.447e^-4	0.946	INTRON CG42613 & 1 other
X	13180364	X_13180364_DEL [dm3] X_13286331_DEL [dm6]	TAT	T	5.449e^-4	0.946	UTR_5_PRIME CG15743 UPSTREAM HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	8008434	2R_8008434_SNP [dm3] 2R_12120929_SNP [dm6]	A	C	5.458e^-4	0.946	INTERGENIC
2R	10031454	2R_10031454_SNP [dm3] 2R_14143949_SNP [dm6]	A	T	5.458e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
2R	16713365	2R_16713365_SNP [dm3] 2R_20825860_SNP [dm6]	A	T	5.465e^-4	0.946	INTRON insc	TF binding site mE1_TFBS_cad
2L	4134724	2L_4134724_SNP [dm3] 2L_4134724_SNP [dm6]	A	T	5.477e^-4	0.946	INTERGENIC
2R	1935048	2R_1935048_SNP [dm3] 2R_6047543_SNP [dm6]	G	T	5.480e^-4	0.946	DOWNSTREAM CG34211 EXON CR44130
3R	17209156	3R_17209156_SNP [dm3] 3R_21383434_SNP [dm6]	G	A	5.488e^-4	0.946	INTERGENIC
2L	4708111	2L_4708111_SNP [dm3] 2L_4708111_SNP [dm6]	T	A	5.495e^-4	0.946	INTRON CG34351
2L	4708137	2L_4708137_SNP [dm3] 2L_4708137_SNP [dm6]	A	T	5.495e^-4	0.946	INTRON CG34351
2L	15064485	2L_15064485_SNP [dm3] 2L_15064485_SNP [dm6]	C	T	5.521e^-4	0.946	SYNONYMOUS_CODING vig INTRON vas
2L	4856273	2L_4856273_SNP [dm3] 2L_4856273_SNP [dm6]	G	C	5.527e^-4	0.946	INTRON pog
2R	17489733	2R_17489733_INS [dm3] 2R_21602228_INS [dm6]	G	GACTGACTG	5.529e^-4	0.946	INTERGENIC
3R	17212382	3R_17212382_SNP [dm3] 3R_21386660_SNP [dm6]	A	C	5.540e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3598953	2R_3598953_SNP [dm3] 2R_7711448_SNP [dm6]	T	G	5.553e^-4	0.946	UPSTREAM mir-4909 INTRON CG1941 EXON mir-4909
X	16878179	X_16878179_SNP [dm3] X_16984146_SNP [dm6]	T	A	5.566e^-4	0.946	INTRON CG45002
X	16878207	X_16878207_SNP [dm3] X_16984174_SNP [dm6]	A	T	5.566e^-4	0.946	INTRON CG45002
3L	6309529	3L_6309529_SNP [dm3] 3L_6316429_SNP [dm6]	T	C	5.575e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
2L	3196839	2L_3196839_SNP [dm3] 2L_3196839_SNP [dm6]	G	A	5.578e^-4	0.946	INTRON CG34393
2R	8132007	2R_8132007_SNP [dm3] 2R_12244502_SNP [dm6]	C	T	5.587e^-4	0.946	NON_SYNONYMOUS_CODING CG43244
2L	13990346	2L_13990346_SNP [dm3] 2L_13990346_SNP [dm6]	T	G	5.594e^-4	0.946	INTRON rk
2R	18668970	2R_18668970_SNP [dm3] 2R_22781465_SNP [dm6]	T	A	5.609e^-4	0.946	INTRON CG42260
2L	13888720	2L_13888720_SNP [dm3] 2L_13888720_SNP [dm6]	C	T	5.613e^-4	0.946	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15593986	3L_15593986_SNP [dm3] 3L_15600886_SNP [dm6]	C	T	5.622e^-4	0.946	INTRON RhoGAP71E
3L	16368224	3L_16368224_SNP [dm3] 3L_16375124_SNP [dm6]	A	G	5.624e^-4	0.946	SYNONYMOUS_CODING roq	TF binding site mE1_TFBS_cad
2L	1452342	2L_1452342_SNP [dm3] 2L_1452342_SNP [dm6]	G	C	5.628e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10894785	X_10894785_DEL [dm3] X_11000752_DEL [dm6]	CGTC	C	5.631e^-4	0.946	INTRON CG42339
3L	3517756	3L_3517756_SNP [dm3] 3L_3517756_SNP [dm6]	G	A	5.640e^-4	0.946	INTRON Eip63E
X	20685620	X_20685620_SNP [dm3] X_20814593_SNP [dm6]	T	A	5.651e^-4	0.946	INTRON shakB
3R	13937389	3R_13937389_SNP [dm3] 3R_18111667_SNP [dm6]	T	C	5.656e^-4	0.946	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25806332	3R_25806332_SNP [dm3] 3R_29980610_SNP [dm6]	C	A	5.678e^-4	0.946	INTERGENIC
3R	4322019	3R_4322019_SNP [dm3] 3R_8496297_SNP [dm6]	T	C	5.678e^-4	0.946	INTERGENIC
3L	15793827	3L_15793827_SNP [dm3] 3L_15800727_SNP [dm6]	T	A	5.679e^-4	0.946	INTERGENIC
3L	5733018	3L_5733018_SNP [dm3] 3L_5739918_SNP [dm6]	T	G	5.724e^-4	0.946	INTRON sif
3R	20507763	3R_20507763_SNP [dm3] 3R_24682041_SNP [dm6]	T	G	5.732e^-4	0.946	INTRON slo
X	4106134	X_4106134_SNP [dm3] X_4212101_SNP [dm6]	A	T	5.742e^-4	0.946	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14832909	3R_14832909_SNP [dm3] 3R_19007187_SNP [dm6]	G	A	5.748e^-4	0.946	INTRON gukh
3L	13864454	3L_13864454_SNP [dm3] 3L_13871354_SNP [dm6]	C	T	5.748e^-4	0.946	UTR_3_PRIME dysc
3L	19056390	3L_19056390_SNP [dm3] 3L_19063290_SNP [dm6]	T	C	5.767e^-4	0.946	UTR_5_PRIME CG6812 UPSTREAM CG3797	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22759933	3L_22759933_SNP [dm3] 3L_22766833_SNP [dm6]	G	A	5.767e^-4	0.946	INTRON SPoCk
3L	18541514	3L_18541514_SNP [dm3] 3L_18548414_SNP [dm6]	G	A	5.778e^-4	0.946	INTERGENIC
2R	12438763	2R_12438763_SNP [dm3] 2R_16551258_SNP [dm6]	G	A	5.780e^-4	0.946	UPSTREAM Syn2 INTERGENIC
3L	21639920	3L_21639920_SNP [dm3] 3L_21646820_SNP [dm6]	G	C	5.783e^-4	0.946	INTRON CG43980
3L	4427259	3L_4427259_SNP [dm3] 3L_4427259_SNP [dm6]	G	T	5.804e^-4	0.946	DOWNSTREAM CG15020 INTERGENIC
3L	11851753	3L_11851753_SNP [dm3] 3L_11858653_SNP [dm6]	A	C	5.806e^-4	0.946	INTRON CG44837
2R	2792539	2R_2792539_SNP [dm3] 2R_6905034_SNP [dm6]	G	C	5.817e^-4	0.946	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3R	3892394	3R_3892394_SNP [dm3] 3R_8066672_SNP [dm6]	T	G	5.826e^-4	0.946	INTRON mAChR-B
X	8473257	X_8473257_SNP [dm3] X_8579224_SNP [dm6]	A	G	5.827e^-4	0.946	INTRON CG12065
X	17617331	X_17617331_SNP [dm3] X_17723298_SNP [dm6]	A	T	5.828e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	17617362	X_17617362_INS [dm3] X_17723329_INS [dm6]	T	TT	5.828e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13329787	3R_13329787_SNP [dm3] 3R_17504065_SNP [dm6]	C	G	5.835e^-4	0.946	UTR_5_PRIME Dscam3
X	2569210	X_2569210_INS [dm3] X_2675177_INS [dm6]	A	AGA	5.840e^-4	0.946	UTR_3_PRIME sgg UPSTREAM CR45197 DOWNSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12297972	2R_12297972_INS [dm3] 2R_16410467_INS [dm6]	A	ACTC	5.841e^-4	0.946	INTRON Sema-2b
3L	21679486	3L_21679486_SNP [dm3] 3L_21686386_SNP [dm6]	C	T	5.846e^-4	0.946	INTERGENIC
3L	15586509	3L_15586509_SNP [dm3] 3L_15593409_SNP [dm6]	A	T	5.852e^-4	0.946	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14188524	2R_14188524_SNP [dm3] 2R_18301019_SNP [dm6]	T	C	5.867e^-4	0.946	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18542150	3L_18542150_SNP [dm3] 3L_18549050_SNP [dm6]	G	C	5.873e^-4	0.946	INTERGENIC
X	17614564	X_17614564_SNP [dm3] X_17720531_SNP [dm6]	T	C	5.877e^-4	0.946	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	5927928	3L_5927928_SNP [dm3] 3L_5934828_SNP [dm6]	A	C	5.885e^-4	0.946	INTRON CG33993
X	21136955	X_21136955_SNP [dm3] X_21265928_SNP [dm6]	C	A	5.890e^-4	0.946	INTRON CG32521
X	21136963	X_21136963_SNP [dm3] X_21265936_SNP [dm6]	T	C	5.890e^-4	0.946	INTRON CG32521
3R	17641895	3R_17641895_SNP [dm3] 3R_21816173_SNP [dm6]	T	G	5.895e^-4	0.946	INTRON CASK
2L	5065075	2L_5065075_SNP [dm3] 2L_5065075_SNP [dm6]	G	A	5.910e^-4	0.946	UPSTREAM qtc INTRON qtc
3R	8525243	3R_8525243_SNP [dm3] 3R_12699521_SNP [dm6]	T	G	5.916e^-4	0.946	INTRON Past1	TF binding site mE1_TFBS_chinmo
3L	17941432	3L_17941432_SNP [dm3] 3L_17948332_SNP [dm6]	T	C	5.926e^-4	0.946	UPSTREAM CR45393 INTERGENIC
3L	8867666	3L_8867666_SNP [dm3] 3L_8874566_SNP [dm6]	A	C	5.927e^-4	0.946	INTRON dally
2R	16106893	2R_16106893_SNP [dm3] 2R_20219388_SNP [dm6]	G	T	5.931e^-4	0.946	INTERGENIC
3L	21704419	3L_21704419_INS [dm3] 3L_21711319_INS [dm6]	T	TGTGTGGCCT	5.951e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	11328715	3L_11328715_SNP [dm3] 3L_11335615_SNP [dm6]	C	A	5.954e^-4	0.946	INTERGENIC
2R	10830682	2R_10830682_SNP [dm3] 2R_14943177_SNP [dm6]	A	G	5.966e^-4	0.946	INTRON CG10257
3R	5994851	3R_5994851_SNP [dm3] 3R_10169129_SNP [dm6]	T	C	5.967e^-4	0.946	INTRON Best1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
2L	5496889	2L_5496889_SNP [dm3] 2L_5496889_SNP [dm6]	G	C	5.972e^-4	0.946	INTERGENIC
2R	13212307	2R_13212307_SNP [dm3] 2R_17324802_SNP [dm6]	T	A	5.973e^-4	0.946	INTRON mbl
2R	13212313	2R_13212313_SNP [dm3] 2R_17324808_SNP [dm6]	T	C	5.973e^-4	0.946	INTRON mbl
2R	13212331	2R_13212331_DEL [dm3] 2R_17324826_DEL [dm6]	CG	A	5.973e^-4	0.946	INTRON mbl
2R	13212335	2R_13212335_SNP [dm3] 2R_17324830_SNP [dm6]	G	C	5.973e^-4	0.946	INTRON mbl
2R	13212336	2R_13212336_DEL [dm3] 2R_17324831_DEL [dm6]	AG	A	5.973e^-4	0.946	INTRON mbl
3R	13858400	3R_13858400_SNP [dm3] 3R_18032678_SNP [dm6]	C	G	5.979e^-4	0.946	INTERGENIC
3L	6967803	3L_6967803_SNP [dm3] 3L_6974703_SNP [dm6]	A	G	6.029e^-4	0.946	INTRON Galphai
2R	4939123	2R_4939123_SNP [dm3] 2R_9051618_SNP [dm6]	T	A	6.034e^-4	0.946	INTRON CG13743
3L	3445173	3L_3445173_SNP [dm3] 3L_3445173_SNP [dm6]	A	T	6.037e^-4	0.946	INTRON eIF5B
X	1624827	X_1624827_SNP [dm3] X_1730794_SNP [dm6]	C	A	6.040e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16966165	3L_16966165_SNP [dm3] 3L_16973065_SNP [dm6]	C	T	6.060e^-4	0.946	INTRON Exn
3R	18990770	3R_18990770_SNP [dm3] 3R_23165048_SNP [dm6]	G	A	6.064e^-4	0.946	INTERGENIC
3L	6079258	3L_6079258_SNP [dm3] 3L_6086158_SNP [dm6]	C	A	6.069e^-4	0.946	INTRON CG13293
3L	9340957	3L_9340957_SNP [dm3] 3L_9347857_SNP [dm6]	T	C	6.078e^-4	0.946	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3L	16821757	3L_16821757_SNP [dm3] 3L_16828657_SNP [dm6]	G	A	6.084e^-4	0.946	START_GAINED CG13024 UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18433204	2L_18433204_SNP [dm3] 2L_18433204_SNP [dm6]	G	A	6.086e^-4	0.946	UPSTREAM CR44488 INTERGENIC
3L	16816355	3L_16816355_SNP [dm3] 3L_16823255_SNP [dm6]	G	A	6.088e^-4	0.946	INTRON CG13024	TF binding site mE1_TFBS_inv
X	5307178	X_5307178_DEL [dm3] X_5413145_DEL [dm6]	AA	A	6.102e^-4	0.946	UTR_3_PRIME spoon DOWNSTREAM spoon
3R	3887162	3R_3887162_SNP [dm3] 3R_8061440_SNP [dm6]	G	T	6.111e^-4	0.946	INTRON mAChR-B	TF binding site mE1_TFBS_inv
2L	16842877	2L_16842877_SNP [dm3] 2L_16842877_SNP [dm6]	G	A	6.118e^-4	0.946	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
3L	14725136	3L_14725136_SNP [dm3] 3L_14732036_SNP [dm6]	G	T	6.122e^-4	0.946	DOWNSTREAM CG13471 INTRON ome
2R	17163370	2R_17163370_SNP [dm3] 2R_21275865_SNP [dm6]	T	G	6.130e^-4	0.946	INTRON Rgk3
2R	8552005	2R_8552005_SNP [dm3] 2R_12664500_SNP [dm6]	C	A	6.144e^-4	0.946	INTRON nemy
3R	24374787	3R_24374787_INS [dm3] 3R_28549065_INS [dm6]	T	TAAGA	6.150e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4787302	2R_4787302_SNP [dm3] 2R_8899797_SNP [dm6]	G	A	6.155e^-4	0.946	SYNONYMOUS_CODING ana2 UPSTREAM CG13751 DOWNSTREAM Sec31 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4788651	2R_4788651_SNP [dm3] 2R_8901146_SNP [dm6]	A	T	6.155e^-4	0.946	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4794245	2R_4794245_SNP [dm3] 2R_8906740_SNP [dm6]	G	C	6.155e^-4	0.946	UPSTREAM CG30349 INTRON CG8258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15042114	2R_15042114_SNP [dm3] 2R_19154609_SNP [dm6]	C	A	6.156e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_Trl
X	4686313	X_4686313_SNP [dm3] X_4792280_SNP [dm6]	A	G	6.158e^-4	0.946	INTERGENIC
3L	10924015	3L_10924015_SNP [dm3] 3L_10930915_SNP [dm6]	G	T	6.163e^-4	0.946	INTERGENIC
3L	2215063	3L_2215063_SNP [dm3] 3L_2215063_SNP [dm6]	T	A	6.163e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2215848	3L_2215848_SNP [dm3] 3L_2215848_SNP [dm6]	C	T	6.163e^-4	0.946	INTERGENIC
3L	2219467	3L_2219467_SNP [dm3] 3L_2219467_SNP [dm6]	G	C	6.163e^-4	0.946	INTERGENIC
3L	2219483	3L_2219483_SNP [dm3] 3L_2219483_SNP [dm6]	T	C	6.163e^-4	0.946	INTERGENIC
3L	2221086	3L_2221086_SNP [dm3] 3L_2221086_SNP [dm6]	G	T	6.163e^-4	0.946	INTERGENIC
3L	2221206	3L_2221206_SNP [dm3] 3L_2221206_SNP [dm6]	A	G	6.163e^-4	0.946	INTERGENIC
3L	7266757	3L_7266757_SNP [dm3] 3L_7273657_SNP [dm6]	T	G	6.163e^-4	0.946	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3L	8326780	3L_8326780_SNP [dm3] 3L_8333680_SNP [dm6]	G	C	6.163e^-4	0.946	INTERGENIC
3R	13002249	3R_13002249_SNP [dm3] 3R_17176527_SNP [dm6]	C	T	6.163e^-4	0.946	INTRON Mur89F
3R	13343804	3R_13343804_SNP [dm3] 3R_17518082_SNP [dm6]	A	G	6.163e^-4	0.946	DOWNSTREAM CR44349 INTERGENIC
3R	13343942	3R_13343942_SNP [dm3] 3R_17518220_SNP [dm6]	A	C	6.163e^-4	0.946	EXON CR44349
3R	13343965	3R_13343965_SNP [dm3] 3R_17518243_SNP [dm6]	G	A	6.163e^-4	0.946	EXON CR44349
3R	13344005	3R_13344005_SNP [dm3] 3R_17518283_SNP [dm6]	C	A	6.163e^-4	0.946	EXON CR44349
X	12434581	X_12434581_SNP [dm3] X_12540548_SNP [dm6]	A	G	6.165e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
X	12434740	X_12434740_SNP [dm3] X_12540707_SNP [dm6]	A	G	6.180e^-4	0.946	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2R	17014837	2R_17014837_SNP [dm3] 2R_21127332_SNP [dm6]	A	G	6.191e^-4	0.946	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	1369286	3L_1369286_SNP [dm3] 3L_1369286_SNP [dm6]	G	A	6.194e^-4	0.946	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	18975581	X_18975581_SNP [dm3] X_19081548_SNP [dm6]	A	G	6.204e^-4	0.946	UPSTREAM CG14191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13727111	2R_13727111_SNP [dm3] 2R_17839606_SNP [dm6]	T	C	6.218e^-4	0.946	SYNONYMOUS_CODING grh	TF binding site mE1_TFBS_inv
3R	4316170	3R_4316170_SNP [dm3] 3R_8490448_SNP [dm6]	C	T	6.230e^-4	0.946	INTERGENIC
X	21457546	X_21457546_SNP [dm3] X_21586519_SNP [dm6]	C	G	6.237e^-4	0.946	INTERGENIC
3L	3519947	3L_3519947_SNP [dm3] 3L_3519947_SNP [dm6]	C	A	6.260e^-4	0.946	INTRON Eip63E
2R	4814526	2R_4814526_SNP [dm3] 2R_8927021_SNP [dm6]	A	T	6.267e^-4	0.946	UTR_3_PRIME CG8235 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19689344	3R_19689344_SNP [dm3] 3R_23863622_SNP [dm6]	A	C	6.269e^-4	0.946	INTRON Pli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15042242	2R_15042242_SNP [dm3] 2R_19154737_SNP [dm6]	C	G	6.284e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15042246	2R_15042246_SNP [dm3] 2R_19154741_SNP [dm6]	C	T	6.284e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22485736	3R_22485736_SNP [dm3] 3R_26660014_SNP [dm6]	A	C	6.285e^-4	0.946	INTRON beat-VII
3R	21516050	3R_21516050_SNP [dm3] 3R_25690328_SNP [dm6]	G	C	6.288e^-4	0.946	INTERGENIC
3L	2375948	3L_2375948_SNP [dm3] 3L_2375948_SNP [dm6]	T	C	6.293e^-4	0.946	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3L	5428033	3L_5428033_SNP [dm3] 3L_5434933_SNP [dm6]	T	C	6.295e^-4	0.946	INTRON CG34391
2R	17426600	2R_17426600_SNP [dm3] 2R_21539095_SNP [dm6]	G	C	6.304e^-4	0.946	NON_SYNONYMOUS_CODING CG33226 DOWNSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16888441	3L_16888441_SNP [dm3] 3L_16895341_SNP [dm6]	A	T	6.310e^-4	0.946	INTRON Lmpt
3L	4353647	3L_4353647_SNP [dm3] 3L_4353647_SNP [dm6]	A	T	6.314e^-4	0.946	INTRON Cip4
2R	11393744	2R_11393744_SNP [dm3] 2R_15506239_SNP [dm6]	G	T	6.322e^-4	0.946	UPSTREAM Ir52d DOWNSTREAM Ir52c INTERGENIC
2L	14852137	2L_14852137_SNP [dm3] 2L_14852137_SNP [dm6]	A	C	6.325e^-4	0.946	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	21491476	3R_21491476_SNP [dm3] 3R_25665754_SNP [dm6]	C	A	6.328e^-4	0.946	UPSTREAM Lgr3 DOWNSTREAM RASSF8 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16878206	X_16878206_SNP [dm3] X_16984173_SNP [dm6]	T	C	6.330e^-4	0.946	INTRON CG45002
2L	18132554	2L_18132554_SNP [dm3] 2L_18132554_SNP [dm6]	G	A	6.338e^-4	0.946	SYNONYMOUS_CODING kel UTR_3_PRIME kel
3L	2219181	3L_2219181_SNP [dm3] 3L_2219181_SNP [dm6]	T	C	6.339e^-4	0.946	INTERGENIC
2R	19578120	2R_19578120_SNP [dm3] 2R_23690597_SNP [dm6]	G	C	6.352e^-4	0.946	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
2R	19578141	2R_19578141_SNP [dm3] 2R_23690618_SNP [dm6]	G	T	6.352e^-4	0.946	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
2R	19578145	2R_19578145_SNP [dm3] 2R_23690622_SNP [dm6]	C	G	6.352e^-4	0.946	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
3R	24930588	3R_24930588_SNP [dm3] 3R_29104866_SNP [dm6]	A	G	6.381e^-4	0.946	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1646906	X_1646906_SNP [dm3] X_1752873_SNP [dm6]	T	G	6.389e^-4	0.946	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo
2R	15049082	2R_15049082_SNP [dm3] 2R_19161577_SNP [dm6]	G	A	6.396e^-4	0.946	SYNONYMOUS_CODING ena
2R	18717940	2R_18717940_SNP [dm3] 2R_22830417_SNP [dm6]	C	T	6.405e^-4	0.946	SYNONYMOUS_CODING CG30272
2L	4262821	2L_4262821_SNP [dm3] 2L_4262821_SNP [dm6]	C	A	6.412e^-4	0.946	INTERGENIC
X	15327496	X_15327496_INS [dm3] X_15433463_INS [dm6]	G	GCGCTGCGTCTATG...	6.416e^-4	0.946	INTRON Cngl	transposable element FlyBase
2R	13029381	2R_13029381_SNP [dm3] 2R_17141876_SNP [dm6]	T	A	6.444e^-4	0.946	DOWNSTREAM CR44386 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10871236	3R_10871236_SNP [dm3] 3R_15045514_SNP [dm6]	G	A	6.460e^-4	0.946	INTERGENIC
2R	18587934	2R_18587934_DEL [dm3] 2R_22700429_DEL [dm6]	TT	T	6.470e^-4	0.946	UTR_5_PRIME robo DOWNSTREAM CG30259 INTRON robo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	17118877	2R_17118877_INS [dm3] 2R_21231372_INS [dm6]	A	AGGATAAA	6.474e^-4	0.946	INTRON ASPP
3L	3097603	3L_3097603_SNP [dm3] 3L_3097603_SNP [dm6]	T	G	6.476e^-4	0.946	UPSTREAM tRNA:CR32272 DOWNSTREAM tRNA:CR32285 & 1 other INTRON Cht7
2R	15045557	2R_15045557_SNP [dm3] 2R_19158052_SNP [dm6]	G	C	6.480e^-4	0.946	INTRON ena	TF binding site mE1_TFBS_inv
2R	13180875	2R_13180875_SNP [dm3] 2R_17293370_SNP [dm6]	G	C	6.488e^-4	0.946	INTRON mbl
3R	15787351	3R_15787351_SNP [dm3] 3R_19961629_SNP [dm6]	T	G	6.489e^-4	0.946	INTRON Hs6st
2R	13033736	2R_13033736_SNP [dm3] 2R_17146231_SNP [dm6]	C	G	6.489e^-4	0.946	DOWNSTREAM tRNA:CR30235 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5226771	X_5226771_SNP [dm3] X_5332738_SNP [dm6]	C	T	6.491e^-4	0.946	UPSTREAM CanB DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17616724	X_17616724_SNP [dm3] X_17722691_SNP [dm6]	C	T	6.494e^-4	0.946	UPSTREAM CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3L	4669301	3L_4669301_SNP [dm3] 3L_4669301_SNP [dm6]	A	T	6.515e^-4	0.946	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1235816	3L_1235816_SNP [dm3] 3L_1235816_SNP [dm6]	G	C	6.517e^-4	0.946	UTR_5_PRIME CG9194 DOWNSTREAM CG33966 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6495958	3R_6495958_SNP [dm3] 3R_10670236_SNP [dm6]	C	T	6.519e^-4	0.946	INTERGENIC
3L	8556083	3L_8556083_SNP [dm3] 3L_8562983_SNP [dm6]	A	C	6.529e^-4	0.946	SYNONYMOUS_CODING rhea
3R	4273516	3R_4273516_SNP [dm3] 3R_8447794_SNP [dm6]	T	A	6.529e^-4	0.946	INTRON CG45263
3R	18689105	3R_18689105_SNP [dm3] 3R_22863383_SNP [dm6]	T	C	6.533e^-4	0.946	INTERGENIC
3R	12114233	3R_12114233_SNP [dm3] 3R_16288511_SNP [dm6]	C	T	6.536e^-4	0.946	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
3L	2082560	3L_2082560_SNP [dm3] 3L_2082560_SNP [dm6]	A	G	6.563e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls
2L	7623129	2L_7623129_SNP [dm3] 2L_7623129_SNP [dm6]	T	C	6.569e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17975311	3L_17975311_DEL [dm3] 3L_17982211_DEL [dm6]	AA	A	6.569e^-4	0.946	INTRON Eip75B
2L	5577259	2L_5577259_SNP [dm3] 2L_5577259_SNP [dm6]	A	G	6.575e^-4	0.946	INTERGENIC
2L	4135079	2L_4135079_SNP [dm3] 2L_4135079_SNP [dm6]	A	G	6.578e^-4	0.946	INTERGENIC
2L	18044185	2L_18044185_DEL [dm3] 2L_18044185_DEL [dm6]	CATTTC	C	6.587e^-4	0.946	INTRON rdo
2R	20157624	2R_20157624_SNP [dm3] 2R_24270101_SNP [dm6]	A	T	6.588e^-4	0.946	UPSTREAM CG13577 INTERGENIC
3L	9352923	3L_9352923_SNP [dm3] 3L_9359823_SNP [dm6]	T	A	6.598e^-4	0.946	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	14674625	2L_14674625_SNP [dm3] 2L_14674625_SNP [dm6]	G	A	6.629e^-4	0.946	INTRON osp
3R	25941377	3R_25941377_SNP [dm3] 3R_30115655_SNP [dm6]	T	C	6.637e^-4	0.946	INTRON sima
3L	21595542	3L_21595542_SNP [dm3] 3L_21602442_SNP [dm6]	C	A	6.645e^-4	0.946	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6136664	X_6136664_SNP [dm3] X_6242631_SNP [dm6]	C	G	6.655e^-4	0.946	SPLICE_SITE_REGION Rbcn-3A INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16361133	2L_16361133_INS [dm3] 2L_16361133_INS [dm6]	T	TT	6.664e^-4	0.946	INTERGENIC
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	6.675e^-4	0.946	INTERGENIC
X	4107919	X_4107919_SNP [dm3] X_4213886_SNP [dm6]	A	C	6.709e^-4	0.946	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
3L	14335003	3L_14335003_DEL [dm3] 3L_14341903_DEL [dm6]	TT	T	6.753e^-4	0.946	INTRON fz
3L	18313389	3L_18313389_SNP [dm3] 3L_18320289_SNP [dm6]	T	C	6.764e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
X	17152980	X_17152980_SNP [dm3] X_17258947_SNP [dm6]	T	C	6.764e^-4	0.946	UPSTREAM f INTRON f
3L	21612164	3L_21612164_SNP [dm3] 3L_21619064_SNP [dm6]	C	G	6.769e^-4	0.946	NON_SYNONYMOUS_CODING CG11307 DOWNSTREAM CG7166	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21612754	3L_21612754_SNP [dm3] 3L_21619654_SNP [dm6]	C	G	6.769e^-4	0.946	DOWNSTREAM CG7166 INTRON CG11307
3L	21627424	3L_21627424_SNP [dm3] 3L_21634324_SNP [dm6]	T	C	6.769e^-4	0.946	UTR_5_PRIME MED1 UPSTREAM ORMDL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21631203	3L_21631203_SNP [dm3] 3L_21638103_SNP [dm6]	T	A	6.769e^-4	0.946	INTRON CG32444
3L	21648886	3L_21648886_SNP [dm3] 3L_21655786_SNP [dm6]	A	T	6.769e^-4	0.946	INTRON CG43980
3L	21701094	3L_21701094_SNP [dm3] 3L_21707994_SNP [dm6]	C	T	6.769e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6330561	2R_6330561_SNP [dm3] 2R_10443056_SNP [dm6]	T	A	6.778e^-4	0.946	INTRON Galphao
2R	14410391	2R_14410391_SNP [dm3] 2R_18522886_SNP [dm6]	C	T	6.787e^-4	0.946	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1375279	3L_1375279_SNP [dm3] 3L_1375279_SNP [dm6]	A	G	6.791e^-4	0.946	INTRON Ptp61F & 1 other
2L	18146285	2L_18146285_SNP [dm3] 2L_18146285_SNP [dm6]	T	A	6.835e^-4	0.946	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10421265	2R_10421265_SNP [dm3] 2R_14533760_SNP [dm6]	A	C	6.835e^-4	0.946	INTRON ttv
3R	17212364	3R_17212364_SNP [dm3] 3R_21386642_SNP [dm6]	G	A	6.837e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15042190	2R_15042190_SNP [dm3] 2R_19154685_SNP [dm6]	G	C	6.842e^-4	0.946	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21726369	3R_21726369_SNP [dm3] 3R_25900647_SNP [dm6]	G	T	6.843e^-4	0.946	SYNONYMOUS_CODING CG31091 DOWNSTREAM MCO3
X	9735227	X_9735227_SNP [dm3] X_9841194_SNP [dm6]	C	G	6.853e^-4	0.946	INTRON CG32698
3L	3973270	3L_3973270_SNP [dm3] 3L_3973270_SNP [dm6]	C	T	6.854e^-4	0.946	NON_SYNONYMOUS_CODING CG43915	regulatory region REDfly_CRMs
3R	16993383	3R_16993383_SNP [dm3] 3R_21167661_SNP [dm6]	C	A	6.864e^-4	0.946	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
2L	18432846	2L_18432846_SNP [dm3] 2L_18432846_SNP [dm6]	A	G	6.866e^-4	0.946	UPSTREAM CR44488 INTERGENIC
2L	18432857	2L_18432857_SNP [dm3] 2L_18432857_SNP [dm6]	C	T	6.866e^-4	0.946	UPSTREAM CR44488 INTERGENIC
3R	6179317	3R_6179317_SNP [dm3] 3R_10353595_SNP [dm6]	T	C	6.876e^-4	0.946	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2R	7486869	2R_7486869_SNP [dm3] 2R_11599364_SNP [dm6]	C	G	6.878e^-4	0.946	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	3444796	3L_3444796_SNP [dm3] 3L_3444796_SNP [dm6]	T	C	6.885e^-4	0.946	INTRON eIF5B	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	2792688	2R_2792688_SNP [dm3] 2R_6905183_SNP [dm6]	G	A	6.889e^-4	0.946	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3R	25825836	3R_25825836_SNP [dm3] 3R_30000114_SNP [dm6]	T	C	6.901e^-4	0.946	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26218371	3R_26218371_SNP [dm3] 3R_30392649_SNP [dm6]	T	C	6.903e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21547884	3L_21547884_SNP [dm3] 3L_21554784_SNP [dm6]	A	G	6.909e^-4	0.946	UTR_5_PRIME Wnk DOWNSTREAM CG7173	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	22198751	3R_22198751_SNP [dm3] 3R_26373029_SNP [dm6]	T	A	6.912e^-4	0.946	INTERGENIC
3L	8293346	3L_8293346_SNP [dm3] 3L_8300246_SNP [dm6]	A	G	6.925e^-4	0.946	NON_SYNONYMOUS_CODING CG13671 UPSTREAM CG7197	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	2375183	3L_2375183_SNP [dm3] 3L_2375183_SNP [dm6]	C	A	6.928e^-4	0.946	NON_SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10272932	X_10272932_SNP [dm3] X_10378899_SNP [dm6]	T	C	6.939e^-4	0.946	SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	4897894	2L_4897894_SNP [dm3] 2L_4897894_SNP [dm6]	T	A	6.942e^-4	0.946	INTRON CG3036
2L	4897201	2L_4897201_SNP [dm3] 2L_4897201_SNP [dm6]	C	G	6.946e^-4	0.946	INTRON CG3036
3L	19046905	3L_19046905_DEL [dm3] 3L_19053805_DEL [dm6]	GC	G	6.965e^-4	0.946	UPSTREAM CG43407 INTERGENIC
2R	14931863	2R_14931863_SNP [dm3] 2R_19044358_SNP [dm6]	T	C	6.978e^-4	0.946	INTERGENIC
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	6.983e^-4	0.946	INTRON CG42524
2R	18716431	2R_18716431_SNP [dm3] 2R_22828908_SNP [dm6]	C	T	7.001e^-4	0.946	UPSTREAM CG30272 DOWNSTREAM CG30274 & 1 other INTERGENIC
X	5058587	X_5058587_SNP [dm3] X_5164554_SNP [dm6]	C	G	7.007e^-4	0.946	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10000920	2R_10000920_SNP [dm3] 2R_14113415_SNP [dm6]	A	G	7.019e^-4	0.946	INTRON Prosap	TF binding site mE1_TFBS_bab1
X	4979420	X_4979420_SNP [dm3] X_5085387_SNP [dm6]	T	G	7.021e^-4	0.946	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4043386	3L_4043386_SNP [dm3] 3L_4043386_SNP [dm6]	T	C	7.022e^-4	0.946	DOWNSTREAM Rcd5 INTERGENIC
3L	2082929	3L_2082929_SNP [dm3] 3L_2082929_SNP [dm6]	T	G	7.025e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls
2L	12148678	2L_12148678_SNP [dm3] 2L_12148678_SNP [dm6]	C	T	7.037e^-4	0.946	INTRON CG31760
2L	12148683	2L_12148683_SNP [dm3] 2L_12148683_SNP [dm6]	T	C	7.037e^-4	0.946	INTRON CG31760
3R	19563393	3R_19563393_SNP [dm3] 3R_23737671_SNP [dm6]	A	G	7.040e^-4	0.946	INTRON Hmgcr
X	5637390	X_5637390_SNP [dm3] X_5743357_SNP [dm6]	A	G	7.042e^-4	0.946	SYNONYMOUS_CODING IntS6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	21476957	3L_21476957_SNP [dm3] 3L_21483857_SNP [dm6]	G	A	7.045e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	3201622	2L_3201622_SNP [dm3] 2L_3201622_SNP [dm6]	A	G	7.051e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17613542	X_17613542_SNP [dm3] X_17719509_SNP [dm6]	G	A	7.058e^-4	0.946	INTRON CG42684	TF binding site mE1_TFBS_bab1
3R	9927543	3R_9927543_SNP [dm3] 3R_14101821_SNP [dm6]	C	A	7.060e^-4	0.946	INTRON PK1-R	TF binding site mE1_TFBS_cad
2L	11299599	2L_11299599_SNP [dm3] 2L_11299599_SNP [dm6]	C	G	7.063e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16922160	2L_16922160_INS [dm3] 2L_16922160_INS [dm6]	G	CC	7.075e^-4	0.946	INTERGENIC
3L	16418854	3L_16418854_SNP [dm3] 3L_16425754_SNP [dm6]	T	C	7.075e^-4	0.946	INTRON CG33158 & 1 other
3L	3095072	3L_3095072_SNP [dm3] 3L_3095072_SNP [dm6]	C	T	7.075e^-4	0.946	UPSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site mE1_TFBS_cad
3L	3099215	3L_3099215_SNP [dm3] 3L_3099215_SNP [dm6]	C	T	7.075e^-4	0.946	INTRON Cht7
3R	11366703	3R_11366703_SNP [dm3] 3R_15540981_SNP [dm6]	G	A	7.075e^-4	0.946	INTRON CG18519	TF binding site mE1_TFBS_chinmo
3R	11390057	3R_11390057_SNP [dm3] 3R_15564335_SNP [dm6]	C	G	7.075e^-4	0.946	INTERGENIC
2L	20699226	2L_20699226_SNP [dm3] 2L_20699226_SNP [dm6]	C	T	7.102e^-4	0.946	INTRON Hr38
2R	4788513	2R_4788513_SNP [dm3] 2R_8901008_SNP [dm6]	G	A	7.102e^-4	0.946	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4790956	2R_4790956_SNP [dm3] 2R_8903451_SNP [dm6]	A	T	7.102e^-4	0.946	UTR_3_PRIME Ggamma1 DOWNSTREAM Ggamma1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	4795751	2R_4795751_SNP [dm3] 2R_8908246_SNP [dm6]	C	T	7.102e^-4	0.946	SYNONYMOUS_CODING CG30349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	4800824	2R_4800824_SNP [dm3] 2R_8913319_SNP [dm6]	G	A	7.102e^-4	0.946	INTRON Pgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	4802377	2R_4802377_SNP [dm3] 2R_8914872_SNP [dm6]	C	T	7.102e^-4	0.946	UTR_5_PRIME lin UPSTREAM Pgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4809083	2R_4809083_SNP [dm3] 2R_8921578_SNP [dm6]	A	G	7.102e^-4	0.946	SYNONYMOUS_CODING Spt
2R	4809493	2R_4809493_SNP [dm3] 2R_8921988_SNP [dm6]	G	C	7.102e^-4	0.946	NON_SYNONYMOUS_CODING Spt UPSTREAM CG8243	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	4813290	2R_4813290_SNP [dm3] 2R_8925785_SNP [dm6]	G	C	7.102e^-4	0.946	SYNONYMOUS_CODING CG8237 DOWNSTREAM CG8243	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4816759	2R_4816759_SNP [dm3] 2R_8929254_SNP [dm6]	G	A	7.102e^-4	0.946	SYNONYMOUS_CODING PAN2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4823527	2R_4823527_SNP [dm3] 2R_8936022_SNP [dm6]	G	T	7.102e^-4	0.946	NON_SYNONYMOUS_CODING FANCI
2L	3325032	2L_3325032_SNP [dm3] 2L_3325032_SNP [dm6]	G	A	7.107e^-4	0.946	SYNONYMOUS_CODING CG33281
X	17616904	X_17616904_SNP [dm3] X_17722871_SNP [dm6]	C	T	7.111e^-4	0.946	UPSTREAM CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	15385928	2R_15385928_SNP [dm3] 2R_19498423_SNP [dm6]	T	G	7.114e^-4	0.946	INTRON CG15120	TF binding site mE1_TFBS_cad
3L	10483353	3L_10483353_SNP [dm3] 3L_10490253_SNP [dm6]	A	G	7.116e^-4	0.946	UPSTREAM S-Lap4 INTRON A2bp1
3L	2215049	3L_2215049_SNP [dm3] 3L_2215049_SNP [dm6]	A	G	7.130e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2219447	3L_2219447_SNP [dm3] 3L_2219447_SNP [dm6]	T	C	7.130e^-4	0.946	INTERGENIC
3R	18229505	3R_18229505_SNP [dm3] 3R_22403783_SNP [dm6]	T	A	7.141e^-4	0.946	INTRON CG13856
2L	18545141	2L_18545141_SNP [dm3] 2L_18545141_SNP [dm6]	C	T	7.150e^-4	0.946	INTRON Pde11
3L	19060596	3L_19060596_SNP [dm3] 3L_19067496_SNP [dm6]	T	A	7.157e^-4	0.946	UTR_3_PRIME Mkp3 DOWNSTREAM Mkp3
X	17618049	X_17618049_SNP [dm3] X_17724016_SNP [dm6]	T	C	7.162e^-4	0.946	INTRON CG42684
2R	18181115	2R_18181115_SNP [dm3] 2R_22293610_SNP [dm6]	G	A	7.170e^-4	0.946	UTR_5_PRIME CG5819 INTRON CG5819
3L	18980971	3L_18980971_SNP [dm3] 3L_18987871_SNP [dm6]	T	A	7.187e^-4	0.946	SYNONYMOUS_CODING CG11619 DOWNSTREAM CG34256
2R	11346275	2R_11346275_SNP [dm3] 2R_15458770_SNP [dm6]	T	C	7.188e^-4	0.946	INTRON CG43729
3R	6301603	3R_6301603_SNP [dm3] 3R_10475881_SNP [dm6]	A	T	7.193e^-4	0.946	INTERGENIC
3R	6302582	3R_6302582_SNP [dm3] 3R_10476860_SNP [dm6]	C	T	7.193e^-4	0.946	INTERGENIC
3L	5510524	3L_5510524_SNP [dm3] 3L_5517424_SNP [dm6]	A	C	7.201e^-4	0.946	INTRON Lkr
3R	18688457	3R_18688457_SNP [dm3] 3R_22862735_SNP [dm6]	A	C	7.215e^-4	0.946	INTERGENIC
2L	17414790	2L_17414790_SNP [dm3] 2L_17414790_SNP [dm6]	T	A	7.219e^-4	0.946	DOWNSTREAM Dif INTRON Dif
X	8951244	X_8951244_SNP [dm3] X_9057211_SNP [dm6]	T	A	7.223e^-4	0.946	NON_SYNONYMOUS_CODING CG15365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16816369	3L_16816369_INS [dm3] 3L_16823269_INS [dm6]	G	GGCTAATCATAAAAGG...	7.228e^-4	0.946	INTRON CG13024	TF binding site mE1_TFBS_inv
2L	10128959	2L_10128959_SNP [dm3] 2L_10128959_SNP [dm6]	G	A	7.230e^-4	0.946	INTRON CG44153
2L	11226456	2L_11226456_SNP [dm3] 2L_11226456_SNP [dm6]	T	A	7.241e^-4	0.946	INTRON ab
3R	12639828	3R_12639828_SNP [dm3] 3R_16814106_SNP [dm6]	A	G	7.251e^-4	0.946	INTRON abd-A	regulatory region REDfly_CRMs
2R	11389070	2R_11389070_DEL [dm3] 2R_15501565_DEL [dm6]	TTTT	T	7.256e^-4	0.946	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
3R	12133032	3R_12133032_SNP [dm3] 3R_16307310_SNP [dm6]	T	C	7.260e^-4	0.946	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5912106	3L_5912106_SNP [dm3] 3L_5919006_SNP [dm6]	A	G	7.270e^-4	0.946	INTRON CG10483 EXON CR45167
3R	8147882	3R_8147882_SNP [dm3] 3R_12322160_SNP [dm6]	C	T	7.275e^-4	0.946	DOWNSTREAM tRNA:CR31432 INTERGENIC
2L	5117871	2L_5117871_SNP [dm3] 2L_5117871_SNP [dm6]	C	T	7.279e^-4	0.946	INTRON Msp300
2L	5117876	2L_5117876_SNP [dm3] 2L_5117876_SNP [dm6]	C	T	7.279e^-4	0.946	INTRON Msp300
3R	3880029	3R_3880029_SNP [dm3] 3R_8054307_SNP [dm6]	C	T	7.287e^-4	0.946	INTRON CG43060
3R	27672617	3R_27672617_SNP [dm3] 3R_31846895_SNP [dm6]	T	C	7.288e^-4	0.946	DOWNSTREAM heph & 1 other INTERGENIC
3L	8867656	3L_8867656_SNP [dm3] 3L_8874556_SNP [dm6]	C	T	7.292e^-4	0.946	INTRON dally
2R	18670041	2R_18670041_SNP [dm3] 2R_22782536_SNP [dm6]	C	G	7.303e^-4	0.946	INTRON CG42260
3R	22190532	3R_22190532_SNP [dm3] 3R_26364810_SNP [dm6]	A	G	7.311e^-4	0.946	INTERGENIC
2L	5812088	2L_5812088_SNP [dm3] 2L_5812088_SNP [dm6]	G	A	7.312e^-4	0.946	DOWNSTREAM CG43307 INTERGENIC
2R	8376161	2R_8376161_SNP [dm3] 2R_12488656_SNP [dm6]	A	C	7.314e^-4	0.946	SYNONYMOUS_CODING fdl DOWNSTREAM Dh44-R2
2R	16820202	2R_16820202_SNP [dm3] 2R_20932697_SNP [dm6]	G	A	7.335e^-4	0.946	INTRON Rx	TF binding site BDTNP1_TFBS_dl
3R	18990768	3R_18990768_SNP [dm3] 3R_23165046_SNP [dm6]	T	G	7.345e^-4	0.946	INTERGENIC
2R	19579171	2R_19579171_SNP [dm3] 2R_23691648_SNP [dm6]	G	A	7.356e^-4	0.946	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13643546	3R_13643546_SNP [dm3] 3R_17817824_SNP [dm6]	A	G	7.357e^-4	0.946	INTRON tinc
3L	4384038	3L_4384038_SNP [dm3] 3L_4384038_SNP [dm6]	T	C	7.362e^-4	0.946	UPSTREAM slow INTERGENIC
3L	4384059	3L_4384059_SNP [dm3] 3L_4384059_SNP [dm6]	C	T	7.362e^-4	0.946	UPSTREAM slow INTERGENIC
3L	4384062	3L_4384062_SNP [dm3] 3L_4384062_SNP [dm6]	G	A	7.362e^-4	0.946	UPSTREAM slow INTERGENIC
2L	18113956	2L_18113956_SNP [dm3] 2L_18113956_SNP [dm6]	T	G	7.387e^-4	0.946	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	17281568	2R_17281568_SNP [dm3] 2R_21394063_SNP [dm6]	C	T	7.387e^-4	0.946	UTR_3_PRIME Sdc DOWNSTREAM Sdc
3L	13085371	3L_13085371_SNP [dm3] 3L_13092271_SNP [dm6]	G	A	7.397e^-4	0.946	INTERGENIC
3L	13085374	3L_13085374_SNP [dm3] 3L_13092274_SNP [dm6]	T	A	7.397e^-4	0.946	INTERGENIC
3L	21697135	3L_21697135_SNP [dm3] 3L_21704035_SNP [dm6]	T	A	7.412e^-4	0.946	INTRON CG32447
3L	21766807	3L_21766807_SNP [dm3] 3L_21773707_SNP [dm6]	T	A	7.412e^-4	0.946	INTRON CG42689
2R	7991031	2R_7991031_SNP [dm3] 2R_12103526_SNP [dm6]	A	C	7.418e^-4	0.946	INTRON jeb
3R	17641726	3R_17641726_SNP [dm3] 3R_21816004_SNP [dm6]	T	C	7.424e^-4	0.946	INTRON CASK
3L	2217096	3L_2217096_SNP [dm3] 3L_2217096_SNP [dm6]	G	A	7.428e^-4	0.946	INTERGENIC
3L	9525051	3L_9525051_SNP [dm3] 3L_9531951_SNP [dm6]	T	A	7.435e^-4	0.946	DOWNSTREAM Or67a INTERGENIC
3L	18871175	3L_18871175_INS [dm3] 3L_18878075_INS [dm6]	A	AA	7.449e^-4	0.946	UTR_3_PRIME Ugt DOWNSTREAM CG3961
3R	25507386	3R_25507386_SNP [dm3] 3R_29681664_SNP [dm6]	C	T	7.466e^-4	0.946	UPSTREAM Gycalpha99B INTRON CG7582	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7955359	3L_7955359_SNP [dm3] 3L_7962259_SNP [dm6]	T	C	7.472e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8106424	2R_8106424_SNP [dm3] 2R_12218919_SNP [dm6]	T	G	7.485e^-4	0.946	INTERGENIC
2R	8106425	2R_8106425_SNP [dm3] 2R_12218920_SNP [dm6]	A	G	7.485e^-4	0.946	INTERGENIC
2R	7714332	2R_7714332_SNP [dm3] 2R_11826827_SNP [dm6]	A	T	7.486e^-4	0.946	UTR_3_PRIME CG13192 DOWNSTREAM Sobp
2L	3703655	2L_3703655_SNP [dm3] 2L_3703655_SNP [dm6]	A	G	7.492e^-4	0.946	UPSTREAM CG2816 DOWNSTREAM CR44311 & 1 other INTERGENIC
2L	13906886	2L_13906886_SNP [dm3] 2L_13906886_SNP [dm6]	A	G	7.498e^-4	0.946	SYNONYMOUS_CODING Ance
2R	13212309	2R_13212309_SNP [dm3] 2R_17324804_SNP [dm6]	T	C	7.503e^-4	0.946	INTRON mbl
2L	14252558	2L_14252558_SNP [dm3] 2L_14252558_SNP [dm6]	A	T	7.513e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	3930382	2R_3930382_SNP [dm3] 2R_8042877_SNP [dm6]	A	T	7.520e^-4	0.946	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
2L	10169412	2L_10169412_SNP [dm3] 2L_10169412_SNP [dm6]	T	A	7.520e^-4	0.946	INTRON CG44153
2R	4786217	2R_4786217_SNP [dm3] 2R_8898712_SNP [dm6]	A	T	7.536e^-4	0.946	UTR_3_PRIME Sec31 UPSTREAM CR45202 DOWNSTREAM ana2
2R	7994239	2R_7994239_SNP [dm3] 2R_12106734_SNP [dm6]	T	G	7.549e^-4	0.946	INTRON jeb
2R	7994241	2R_7994241_DEL [dm3] 2R_12106736_DEL [dm6]	AA	A	7.549e^-4	0.946	INTRON jeb
3L	3821499	3L_3821499_SNP [dm3] 3L_3821499_SNP [dm6]	C	T	7.561e^-4	0.946	INTRON enc
3R	23422560	3R_23422560_SNP [dm3] 3R_27596838_SNP [dm6]	T	G	7.585e^-4	0.946	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2L	11419818	2L_11419818_SNP [dm3] 2L_11419818_SNP [dm6]	T	A	7.590e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7939118	X_7939118_SNP [dm3] X_8045085_SNP [dm6]	T	G	7.598e^-4	0.946	DOWNSTREAM fs_1_h INTRON fs_1_h
3R	25825945	3R_25825945_SNP [dm3] 3R_30000223_SNP [dm6]	G	A	7.604e^-4	0.946	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17978351	2L_17978351_SNP [dm3] 2L_17978351_SNP [dm6]	G	A	7.616e^-4	0.946	SYNONYMOUS_CODING btv
2L	5117993	2L_5117993_SNP [dm3] 2L_5117993_SNP [dm6]	C	T	7.620e^-4	0.946	INTRON Msp300
3R	4955606	3R_4955606_SNP [dm3] 3R_9129884_SNP [dm6]	T	A	7.623e^-4	0.946	INTRON pum
3R	8433646	3R_8433646_SNP [dm3] 3R_12607924_SNP [dm6]	A	G	7.637e^-4	0.946	INTERGENIC
2R	10804048	2R_10804048_SNP [dm3] 2R_14916543_SNP [dm6]	T	C	7.651e^-4	0.946	INTRON CG10249
3L	1234708	3L_1234708_SNP [dm3] 3L_1234708_SNP [dm6]	T	G	7.651e^-4	0.946	SYNONYMOUS_CODING CG33966 UPSTREAM CR45747 DOWNSTREAM CG33965
3L	2510211	3L_2510211_SNP [dm3] 3L_2510211_SNP [dm6]	G	A	7.660e^-4	0.946	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10514027	2R_10514027_SNP [dm3] 2R_14626522_SNP [dm6]	G	C	7.670e^-4	0.946	INTERGENIC
X	9331719	X_9331719_SNP [dm3] X_9437686_SNP [dm6]	T	C	7.674e^-4	0.946	INTRON mgl
X	14015069	X_14015069_INS [dm3] X_14121036_INS [dm6]	A	AA	7.676e^-4	0.946	INTERGENIC
X	6967352	X_6967352_SNP [dm3] X_7073319_SNP [dm6]	C	T	7.694e^-4	0.946	DOWNSTREAM CG4607 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	8358595	X_8358595_SNP [dm3] X_8464562_SNP [dm6]	G	A	7.699e^-4	0.946	UPSTREAM Sptr INTERGENIC
2L	17360049	2L_17360049_SNP [dm3] 2L_17360049_SNP [dm6]	G	C	7.702e^-4	0.946	UPSTREAM CR44346 INTERGENIC
2R	19579145	2R_19579145_SNP [dm3] 2R_23691622_SNP [dm6]	G	A	7.704e^-4	0.946	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19579160	2R_19579160_SNP [dm3] 2R_23691637_SNP [dm6]	T	C	7.704e^-4	0.946	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18485781	3R_18485781_SNP [dm3] 3R_22660059_SNP [dm6]	T	A	7.713e^-4	0.946	INTRON CG45058
3L	19049122	3L_19049122_INS [dm3] 3L_19056022_INS [dm6]	A	ATA	7.751e^-4	0.946	INTERGENIC
3L	19049126	3L_19049126_SNP [dm3] 3L_19056026_SNP [dm6]	A	T	7.751e^-4	0.946	INTERGENIC
3L	19049128	3L_19049128_INS [dm3] 3L_19056028_INS [dm6]	T	TAACAACAA	7.751e^-4	0.946	INTERGENIC
3L	19049134	3L_19049134_SNP [dm3] 3L_19056034_SNP [dm6]	A	T	7.751e^-4	0.946	INTERGENIC
3L	19049138	3L_19049138_SNP [dm3] 3L_19056038_SNP [dm6]	A	T	7.751e^-4	0.946	INTERGENIC
3L	19049141	3L_19049141_SNP [dm3] 3L_19056041_SNP [dm6]	G	A	7.751e^-4	0.946	INTERGENIC
3L	19049145	3L_19049145_SNP [dm3] 3L_19056045_SNP [dm6]	A	T	7.751e^-4	0.946	INTERGENIC
3L	19049157	3L_19049157_SNP [dm3] 3L_19056057_SNP [dm6]	T	A	7.751e^-4	0.946	INTERGENIC
3L	19049170	3L_19049170_SNP [dm3] 3L_19056070_SNP [dm6]	G	A	7.751e^-4	0.946	INTERGENIC
3L	19049175	3L_19049175_SNP [dm3] 3L_19056075_SNP [dm6]	C	T	7.751e^-4	0.946	INTERGENIC
3L	19049187	3L_19049187_DEL [dm3] 3L_19056087_DEL [dm6]	CATTTC	C	7.751e^-4	0.946	INTERGENIC
3L	2530897	3L_2530897_INS [dm3] 3L_2530897_INS [dm6]	T	TT	7.754e^-4	0.946	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	9990822	3R_9990822_SNP [dm3] 3R_14165100_SNP [dm6]	G	C	7.755e^-4	0.946	DOWNSTREAM Dop1R1 INTERGENIC
3R	13942682	3R_13942682_SNP [dm3] 3R_18116960_SNP [dm6]	C	A	7.761e^-4	0.946	INTRON sr
2L	9139096	2L_9139096_SNP [dm3] 2L_9139096_SNP [dm6]	A	T	7.764e^-4	0.946	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8008443	2R_8008443_SNP [dm3] 2R_12120938_SNP [dm6]	T	A	7.772e^-4	0.946	INTERGENIC
X	13737262	X_13737262_SNP [dm3] X_13843229_SNP [dm6]	C	A	7.773e^-4	0.946	INTRON AMPdeam	TF binding site mE1_TFBS_HSA
X	16472434	X_16472434_SNP [dm3] X_16578401_SNP [dm6]	A	G	7.774e^-4	0.946	INTRON CanA-14F
3R	17647127	3R_17647127_SNP [dm3] 3R_21821405_SNP [dm6]	G	A	7.778e^-4	0.946	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6179143	3R_6179143_SNP [dm3] 3R_10353421_SNP [dm6]	A	T	7.783e^-4	0.946	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	16762318	X_16762318_SNP [dm3] X_16868285_SNP [dm6]	A	G	7.786e^-4	0.946	INTRON CG13003
2R	1135540	2R_1135540_SNP [dm3] 2R_5248035_SNP [dm6]	C	G	7.789e^-4	0.946	NON_SYNONYMOUS_CODING Nipped-A INTRON Nipped-A	transposable element FlyBase
3L	2655288	3L_2655288_SNP [dm3] 3L_2655288_SNP [dm6]	G	C	7.794e^-4	0.946	UTR_3_PRIME Snup & 1 other DOWNSTREAM Fife
X	12391005	X_12391005_SNP [dm3] X_12496972_SNP [dm6]	T	A	7.794e^-4	0.946	UPSTREAM CG2556 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	17137092	3L_17137092_SNP [dm3] 3L_17143992_SNP [dm6]	A	G	7.803e^-4	0.946	INTRON Rbp6
X	16040347	X_16040347_INS [dm3] X_16146314_INS [dm6]	T	TGAT	7.805e^-4	0.946	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2R	13542179	2R_13542179_SNP [dm3] 2R_17654674_SNP [dm6]	T	G	7.814e^-4	0.946	INTRON CCHa1-R
3R	4700509	3R_4700509_SNP [dm3] 3R_8874787_SNP [dm6]	A	T	7.842e^-4	0.946	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3L	2530893	3L_2530893_SNP [dm3] 3L_2530893_SNP [dm6]	A	C	7.849e^-4	0.946	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	12191176	2R_12191176_SNP [dm3] 2R_16303671_SNP [dm6]	A	G	7.852e^-4	0.946	EXON CR45232	TF binding site mE1_TFBS_chinmo
3R	11390402	3R_11390402_SNP [dm3] 3R_15564680_SNP [dm6]	T	C	7.856e^-4	0.946	INTERGENIC
X	5380173	X_5380173_SNP [dm3] X_5486140_SNP [dm6]	T	C	7.859e^-4	0.946	INTRON SPR	TF binding site BDTNP1_TFBS_da
3L	9336926	3L_9336926_SNP [dm3] 3L_9343826_SNP [dm6]	A	C	7.874e^-4	0.946	UPSTREAM PGRP-LC INTRON PGRP-LC

By genomic position
Variant impact
Gene name

pc_Remating_Female phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results