DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.774e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03062
In_2R_NS	0.09065
In_3R_Mo	0.07937

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3037 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	13823869	X_13823869_DEL [dm3] X_13929836_DEL [dm6]	TAT	T	2.315e^-7	0.119	INTRON mamo
3R	20561238	3R_20561238_SNP [dm3] 3R_24735516_SNP [dm6]	A	T	3.449e^-7	0.119	INTRON tok
2L	17998195	2L_17998195_DEL [dm3] 2L_17998195_DEL [dm6]	GG	G	3.661e^-7	0.119	INTERGENIC
3R	25830791	3R_25830791_SNP [dm3] 3R_30005069_SNP [dm6]	A	C	4.061e^-7	0.119	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25830813	3R_25830813_SNP [dm3] 3R_30005091_SNP [dm6]	C	T	4.061e^-7	0.119	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17998191	2L_17998191_SNP [dm3] 2L_17998191_SNP [dm6]	G	C	4.496e^-7	0.119	INTERGENIC
3R	23413844	3R_23413844_SNP [dm3] 3R_27588122_SNP [dm6]	G	A	5.198e^-7	0.119	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23413737	3R_23413737_SNP [dm3] 3R_27588015_SNP [dm6]	G	T	5.211e^-7	0.119	INTRON CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9700174	X_9700174_SNP [dm3] X_9806141_SNP [dm6]	T	A	6.875e^-7	0.14	INTRON CG32698
X	15673263	X_15673263_INS [dm3] X_15779230_INS [dm6]	G	GAAAGAAGATCATTGGATTA...	8.645e^-7	0.144	DOWNSTREAM CG43672 INTRON CG43673
X	15673302	X_15673302_SNP [dm3] X_15779269_SNP [dm6]	A	C	8.645e^-7	0.144	DOWNSTREAM CG43672 INTRON CG43673
3L	14950589	3L_14950589_SNP [dm3] 3L_14957489_SNP [dm6]	G	A	1.091e^-6	0.156	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	15673303	X_15673303_SNP [dm3] X_15779270_SNP [dm6]	A	C	1.104e^-6	0.156	DOWNSTREAM CG43672 INTRON CG43673
2R	16399869	2R_16399869_SNP [dm3] 2R_20512364_SNP [dm6]	G	A	1.291e^-6	0.169	DOWNSTREAM CR44648 & 2 others INTERGENIC
3L	5999215	3L_5999215_SNP [dm3] 3L_6006115_SNP [dm6]	A	G	2.615e^-6	0.292	INTRON PVRAP
2R	16399680	2R_16399680_SNP [dm3] 2R_20512175_SNP [dm6]	A	T	2.724e^-6	0.292	DOWNSTREAM CR44648 & 2 others INTERGENIC
3R	13673489	3R_13673489_INS [dm3] 3R_17847767_INS [dm6]	G	GGTCGCACAG	2.797e^-6	0.292	INTRON tinc
3L	14752954	3L_14752954_SNP [dm3] 3L_14759854_SNP [dm6]	T	C	2.961e^-6	0.292	DOWNSTREAM CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	1525834	3L_1525834_DEL [dm3] 3L_1525834_DEL [dm6]	AA	A	3.032e^-6	0.292	INTRON CG12090
3R	18476760	3R_18476760_SNP [dm3] 3R_22651038_SNP [dm6]	C	A	3.406e^-6	0.297	INTRON CG45058
3L	16685212	3L_16685212_SNP [dm3] 3L_16692112_SNP [dm6]	G	A	3.441e^-6	0.297	INTRON Lasp & 2 others
2R	12508133	2R_12508133_SNP [dm3] 2R_16620628_SNP [dm6]	A	G	4.377e^-6	0.297	INTRON CG5065
2R	12508219	2R_12508219_SNP [dm3] 2R_16620714_SNP [dm6]	T	G	4.377e^-6	0.297	INTRON CG5065
2R	12508381	2R_12508381_SNP [dm3] 2R_16620876_SNP [dm6]	T	A	4.377e^-6	0.297	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	12508390	2R_12508390_DEL [dm3] 2R_16620885_DEL [dm6]	CG	C	4.377e^-6	0.297	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	14040244	3L_14040244_SNP [dm3] 3L_14047144_SNP [dm6]	A	G	4.377e^-6	0.297	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
3R	26463923	3R_26463923_SNP [dm3] 3R_30638201_SNP [dm6]	C	T	4.377e^-6	0.297	INTERGENIC
2L	9941063	2L_9941063_SNP [dm3] 2L_9941063_SNP [dm6]	A	G	4.890e^-6	0.32	UTR_3_PRIME CG4619 DOWNSTREAM CG4619 INTRON CG5853
2R	16399798	2R_16399798_SNP [dm3] 2R_20512293_SNP [dm6]	A	T	5.324e^-6	0.326	DOWNSTREAM CR44648 & 2 others INTERGENIC
3L	5426181	3L_5426181_SNP [dm3] 3L_5433081_SNP [dm6]	A	G	5.542e^-6	0.326	SYNONYMOUS_CODING CG34391
3L	13319350	3L_13319350_SNP [dm3] 3L_13326250_SNP [dm6]	T	A	5.804e^-6	0.326	INTERGENIC
2L	12959436	2L_12959436_SNP [dm3] 2L_12959436_SNP [dm6]	T	A	6.078e^-6	0.326	INTERGENIC
3R	27873606	3R_27873606_SNP [dm3] 3R_32047884_SNP [dm6]	T	C	6.340e^-6	0.326	UTR_3_PRIME krz DOWNSTREAM krz
3R	26464186	3R_26464186_SNP [dm3] 3R_30638464_SNP [dm6]	C	T	6.609e^-6	0.326	INTERGENIC
2R	18738294	2R_18738294_SNP [dm3] 2R_22850771_SNP [dm6]	A	G	6.715e^-6	0.326	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4942971	2R_4942971_SNP [dm3] 2R_9055466_SNP [dm6]	G	T	6.807e^-6	0.326	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1404204	2L_1404204_SNP [dm3] 2L_1404204_SNP [dm6]	A	G	6.820e^-6	0.326	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
3L	7953752	3L_7953752_INS [dm3] 3L_7960652_INS [dm6]	A	AAA	7.338e^-6	0.326	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14103515	3R_14103515_SNP [dm3] 3R_18277793_SNP [dm6]	T	A	7.570e^-6	0.326	DOWNSTREAM CG7142 INTRON eIF-1A
2L	12965318	2L_12965318_SNP [dm3] 2L_12965318_SNP [dm6]	G	T	7.829e^-6	0.326	INTERGENIC
3R	25831122	3R_25831122_SNP [dm3] 3R_30005400_SNP [dm6]	G	A	7.996e^-6	0.326	SYNONYMOUS_CODING Nlp UPSTREAM CG7911 DOWNSTREAM CG7912	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19048886	2L_19048886_SNP [dm3] 2L_19048886_SNP [dm6]	T	G	8.425e^-6	0.326	UPSTREAM CG10470 DOWNSTREAM Acn & 1 other INTERGENIC
3R	19066475	3R_19066475_SNP [dm3] 3R_23240753_SNP [dm6]	G	A	8.598e^-6	0.326	UPSTREAM CG4467 INTRON CG4467
X	12204737	X_12204737_SNP [dm3] X_12310704_SNP [dm6]	A	G	8.884e^-6	0.326	INTRON Ten-a
2L	6512070	2L_6512070_SNP [dm3] 2L_6512070_SNP [dm6]	C	T	9.029e^-6	0.326	INTRON CG31637
3L	18685820	3L_18685820_SNP [dm3] 3L_18692720_SNP [dm6]	C	A	9.085e^-6	0.326	DOWNSTREAM CR43987 INTERGENIC
3R	25814112	3R_25814112_SNP [dm3] 3R_29988390_SNP [dm6]	G	A	9.358e^-6	0.326	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	19490716	3R_19490716_SNP [dm3] 3R_23664994_SNP [dm6]	G	A	9.634e^-6	0.326	INTRON CG31145
3R	19490790	3R_19490790_SNP [dm3] 3R_23665068_SNP [dm6]	G	A	9.634e^-6	0.326	INTRON CG31145
2L	9811486	2L_9811486_SNP [dm3] 2L_9811486_SNP [dm6]	A	T	1.014e^-5	0.326	INTRON nAChRalpha6
3R	25814100	3R_25814100_SNP [dm3] 3R_29988378_SNP [dm6]	A	T	1.070e^-5	0.326	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	23251726	3R_23251726_SNP [dm3] 3R_27426004_SNP [dm6]	G	A	1.109e^-5	0.326	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13319356	3L_13319356_SNP [dm3] 3L_13326256_SNP [dm6]	A	G	1.115e^-5	0.326	INTERGENIC
3L	2620140	3L_2620140_INS [dm3] 3L_2620140_INS [dm6]	T	TTGGTTTGGTTTGGGTT...	1.160e^-5	0.326	INTRON Pxn
3L	2469524	3L_2469524_SNP [dm3] 3L_2469524_SNP [dm6]	A	G	1.176e^-5	0.326	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13638071	3R_13638071_SNP [dm3] 3R_17812349_SNP [dm6]	C	T	1.176e^-5	0.326	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	13638090	3R_13638090_SNP [dm3] 3R_17812368_SNP [dm6]	G	C	1.176e^-5	0.326	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13638141	3R_13638141_SNP [dm3] 3R_17812419_SNP [dm6]	A	T	1.176e^-5	0.326	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14103948	3R_14103948_SNP [dm3] 3R_18278226_SNP [dm6]	G	A	1.176e^-5	0.326	UTR_3_PRIME CG7142 INTRON eIF-1A	TF binding site mE1_TFBS_chinmo
3R	14104221	3R_14104221_SNP [dm3] 3R_18278499_SNP [dm6]	G	A	1.176e^-5	0.326	SYNONYMOUS_CODING CG7142 INTRON eIF-1A	TF binding site mE1_TFBS_chinmo
3R	14108499	3R_14108499_SNP [dm3] 3R_18282777_SNP [dm6]	C	T	1.176e^-5	0.326	UTR_3_PRIME eIF-1A UPSTREAM CG8064 DOWNSTREAM CG14312 & 1 other	TF binding site mE1_TFBS_inv
3R	18806015	3R_18806015_SNP [dm3] 3R_22980293_SNP [dm6]	G	A	1.176e^-5	0.326	INTERGENIC
3R	26605221	3R_26605221_SNP [dm3] 3R_30779499_SNP [dm6]	A	T	1.176e^-5	0.326	INTRON zfh1
X	19020662	X_19020662_SNP [dm3] X_19126629_SNP [dm6]	A	C	1.176e^-5	0.326	INTRON tgy
X	4199794	X_4199794_SNP [dm3] X_4305761_SNP [dm6]	T	C	1.176e^-5	0.326	INTERGENIC
X	4199799	X_4199799_SNP [dm3] X_4305766_SNP [dm6]	C	G	1.176e^-5	0.326	INTERGENIC
3L	21639920	3L_21639920_SNP [dm3] 3L_21646820_SNP [dm6]	G	C	1.191e^-5	0.326	INTRON CG43980
2L	16383541	2L_16383541_SNP [dm3] 2L_16383541_SNP [dm6]	C	T	1.239e^-5	0.334	INTERGENIC
2R	16662939	2R_16662939_SNP [dm3] 2R_20775434_SNP [dm6]	T	A	1.264e^-5	0.336	DOWNSTREAM CG43709 & 1 other INTERGENIC
2L	6792436	2L_6792436_SNP [dm3] 2L_6792436_SNP [dm6]	G	T	1.377e^-5	0.338	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14965687	3L_14965687_SNP [dm3] 3L_14972587_SNP [dm6]	T	C	1.382e^-5	0.338	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10369254	2L_10369254_SNP [dm3] 2L_10369254_SNP [dm6]	T	A	1.388e^-5	0.338	INTRON rho-5	TF binding site mE1_TFBS_cad
2L	1962577	2L_1962577_SNP [dm3] 2L_1962577_SNP [dm6]	T	A	1.401e^-5	0.338	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24119987	3R_24119987_SNP [dm3] 3R_28294265_SNP [dm6]	A	G	1.411e^-5	0.338	SYNONYMOUS_CODING CG17856 DOWNSTREAM CR44229 & 1 other
2R	14832655	2R_14832655_SNP [dm3] 2R_18945150_SNP [dm6]	A	G	1.438e^-5	0.338	INTRON sano
3L	17188547	3L_17188547_SNP [dm3] 3L_17195447_SNP [dm6]	A	T	1.438e^-5	0.338	INTRON Rbp6	TF binding site mE1_TFBS_inv
3L	18685843	3L_18685843_DEL [dm3] 3L_18692743_DEL [dm6]	TAGGGGCTACGCAAGTTTAA...	T	1.438e^-5	0.338	DOWNSTREAM CR43987 INTERGENIC
2R	3858717	2R_3858717_DEL [dm3] 2R_7971212_DEL [dm6]	GG	C	1.442e^-5	0.338	UPSTREAM CSN4 INTRON CG8726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19582206	X_19582206_SNP [dm3] X_19688173_SNP [dm6]	T	C	1.465e^-5	0.338	NON_SYNONYMOUS_CODING CG14227 DOWNSTREAM Ubqn	TF binding site mE1_TFBS_sens
3R	19116275	3R_19116275_SNP [dm3] 3R_23290553_SNP [dm6]	C	T	1.510e^-5	0.338	UTR_3_PRIME pnt UPSTREAM CG4434 DOWNSTREAM pnt
2R	17122918	2R_17122918_SNP [dm3] 2R_21235413_SNP [dm6]	A	G	1.542e^-5	0.338	INTRON ASPP
3R	25814061	3R_25814061_SNP [dm3] 3R_29988339_SNP [dm6]	C	T	1.568e^-5	0.338	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	18848471	3L_18848471_SNP [dm3] 3L_18855371_SNP [dm6]	T	A	1.578e^-5	0.338	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2536461	X_2536461_SNP [dm3] X_2642428_SNP [dm6]	A	T	1.611e^-5	0.338	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12959936	2L_12959936_SNP [dm3] 2L_12959936_SNP [dm6]	G	A	1.625e^-5	0.338	INTERGENIC
3R	25842766	3R_25842766_SNP [dm3] 3R_30017044_SNP [dm6]	C	A	1.652e^-5	0.338	INTRON Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19361203	3R_19361203_SNP [dm3] 3R_23535481_SNP [dm6]	T	A	1.655e^-5	0.338	SYNONYMOUS_CODING CG16732 UPSTREAM CG10170
3L	5426205	3L_5426205_SNP [dm3] 3L_5433105_SNP [dm6]	A	C	1.712e^-5	0.338	SYNONYMOUS_CODING CG34391
3R	25297708	3R_25297708_SNP [dm3] 3R_29471986_SNP [dm6]	G	T	1.713e^-5	0.338	INTRON Ptp99A
2R	17346019	2R_17346019_SNP [dm3] 2R_21458514_SNP [dm6]	G	A	1.715e^-5	0.338	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13882654	2R_13882654_DEL [dm3] 2R_17995149_DEL [dm6]	TGTAAGG	T	1.717e^-5	0.338	INTRON dpr13
2R	13882663	2R_13882663_SNP [dm3] 2R_17995158_SNP [dm6]	A	G	1.717e^-5	0.338	INTRON dpr13
2R	13882671	2R_13882671_SNP [dm3] 2R_17995166_SNP [dm6]	T	A	1.717e^-5	0.338	INTRON dpr13
2L	12958066	2L_12958066_SNP [dm3] 2L_12958066_SNP [dm6]	C	A	1.754e^-5	0.342	INTERGENIC
X	17344151	X_17344151_SNP [dm3] X_17450118_SNP [dm6]	A	G	1.826e^-5	0.347	NON_SYNONYMOUS_CODING CG8568
3R	19066390	3R_19066390_SNP [dm3] 3R_23240668_SNP [dm6]	G	A	1.874e^-5	0.347	UPSTREAM CG4467 INTRON CG4467
3R	19066555	3R_19066555_SNP [dm3] 3R_23240833_SNP [dm6]	A	G	1.874e^-5	0.347	UPSTREAM CG4467 INTRON CG4467
3R	19066565	3R_19066565_SNP [dm3] 3R_23240843_SNP [dm6]	G	A	1.874e^-5	0.347	UPSTREAM CG4467 INTRON CG4467
3R	19066566	3R_19066566_SNP [dm3] 3R_23240844_SNP [dm6]	G	A	1.874e^-5	0.347	UPSTREAM CG4467 INTRON CG4467
2R	18678157	2R_18678157_SNP [dm3] 2R_22790652_SNP [dm6]	G	A	1.927e^-5	0.352	INTRON CG42260
3L	7188316	3L_7188316_SNP [dm3] 3L_7195216_SNP [dm6]	A	T	1.964e^-5	0.352	INTERGENIC
2L	4428012	2L_4428012_SNP [dm3] 2L_4428012_SNP [dm6]	G	T	1.971e^-5	0.352	INTRON CG15431
3R	15906447	3R_15906447_SNP [dm3] 3R_20080725_SNP [dm6]	T	A	1.979e^-5	0.352	DOWNSTREAM Rh3 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	5642650	2L_5642650_SNP [dm3] 2L_5642650_SNP [dm6]	T	C	2.023e^-5	0.352	DOWNSTREAM mir-963 & 1 other INTRON CG31646
2L	8067608	2L_8067608_SNP [dm3] 2L_8067608_SNP [dm6]	A	C	2.040e^-5	0.352	INTRON poe
3L	7188452	3L_7188452_SNP [dm3] 3L_7195352_SNP [dm6]	A	G	2.050e^-5	0.352	INTERGENIC
2L	4126958	2L_4126958_SNP [dm3] 2L_4126958_SNP [dm6]	C	T	2.077e^-5	0.352	INTERGENIC
2L	4127065	2L_4127065_INS [dm3] 2L_4127065_INS [dm6]	A	AA	2.077e^-5	0.352	INTERGENIC
2R	7685358	2R_7685358_SNP [dm3] 2R_11797853_SNP [dm6]	C	G	2.152e^-5	0.353	INTRON ths	TF binding site mE1_TFBS_inv
3L	4643255	3L_4643255_SNP [dm3] 3L_4643255_SNP [dm6]	C	T	2.183e^-5	0.353	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19066615	3R_19066615_SNP [dm3] 3R_23240893_SNP [dm6]	T	A	2.220e^-5	0.353	UPSTREAM CG4467 INTRON CG4467
3R	19066621	3R_19066621_SNP [dm3] 3R_23240899_SNP [dm6]	A	T	2.220e^-5	0.353	UPSTREAM CG4467 INTRON CG4467
3R	19066627	3R_19066627_SNP [dm3] 3R_23240905_SNP [dm6]	G	A	2.220e^-5	0.353	UPSTREAM CG4467 INTRON CG4467
3R	19066690	3R_19066690_SNP [dm3] 3R_23240968_SNP [dm6]	G	A	2.220e^-5	0.353	UPSTREAM CG4467 INTRON CG4467
3R	19066791	3R_19066791_SNP [dm3] 3R_23241069_SNP [dm6]	T	A	2.220e^-5	0.353	INTRON CG4467
2R	12357361	2R_12357361_SNP [dm3] 2R_16469856_SNP [dm6]	G	A	2.271e^-5	0.357	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12427574	3L_12427574_INS [dm3] 3L_12434474_INS [dm6]	A	AGAA	2.284e^-5	0.357	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	24119984	3R_24119984_SNP [dm3] 3R_28294262_SNP [dm6]	G	A	2.297e^-5	0.357	SYNONYMOUS_CODING CG17856 DOWNSTREAM CR44229 & 1 other
3R	19066648	3R_19066648_SNP [dm3] 3R_23240926_SNP [dm6]	A	G	2.374e^-5	0.365	UPSTREAM CG4467 INTRON CG4467
3R	18256247	3R_18256247_SNP [dm3] 3R_22430525_SNP [dm6]	C	G	2.417e^-5	0.365	INTRON CG13847
2R	14825590	2R_14825590_SNP [dm3] 2R_18938085_SNP [dm6]	A	G	2.417e^-5	0.365	INTRON sano
3R	26477905	3R_26477905_SNP [dm3] 3R_30652183_SNP [dm6]	A	G	2.502e^-5	0.365	INTERGENIC
3L	12090051	3L_12090051_SNP [dm3] 3L_12096951_SNP [dm6]	G	A	2.525e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12090097	3L_12090097_SNP [dm3] 3L_12096997_SNP [dm6]	A	T	2.525e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12090103	3L_12090103_SNP [dm3] 3L_12097003_SNP [dm6]	A	T	2.525e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12090127	3L_12090127_SNP [dm3] 3L_12097027_SNP [dm6]	T	C	2.525e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9590455	2L_9590455_SNP [dm3] 2L_9590455_SNP [dm6]	C	T	2.533e^-5	0.365	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
2L	12696459	2L_12696459_SNP [dm3] 2L_12696459_SNP [dm6]	A	G	2.567e^-5	0.367	UTR_3_PRIME CG5781 INTRON PICK1
3R	13031183	3R_13031183_SNP [dm3] 3R_17205461_SNP [dm6]	G	T	2.650e^-5	0.372	INTERGENIC
3L	19243543	3L_19243543_SNP [dm3] 3L_19250443_SNP [dm6]	A	C	2.690e^-5	0.372	INTERGENIC
3L	19244135	3L_19244135_SNP [dm3] 3L_19251035_SNP [dm6]	A	G	2.690e^-5	0.372	INTERGENIC
3L	19270635	3L_19270635_SNP [dm3] 3L_19277535_SNP [dm6]	A	C	2.717e^-5	0.372	INTRON CG14086
2L	10509634	2L_10509634_SNP [dm3] 2L_10509634_SNP [dm6]	A	G	2.779e^-5	0.372	SYNONYMOUS_CODING CG7384	TF binding site mE1_TFBS_cad
2R	4220511	2R_4220511_SNP [dm3] 2R_8333006_SNP [dm6]	C	T	2.785e^-5	0.372	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5946943	3R_5946943_SNP [dm3] 3R_10121221_SNP [dm6]	G	A	2.785e^-5	0.372	NON_SYNONYMOUS_CODING gammaSnap2 UPSTREAM CG31477
3R	26460981	3R_26460981_SNP [dm3] 3R_30635259_SNP [dm6]	G	A	2.832e^-5	0.372	INTERGENIC
2L	4822438	2L_4822438_SNP [dm3] 2L_4822438_SNP [dm6]	T	C	2.864e^-5	0.372	UTR_5_PRIME CG15628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	2344371	X_2344371_SNP [dm3] X_2450338_SNP [dm6]	T	A	2.878e^-5	0.372	UTR_3_PRIME z INTRON boi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27650401	3R_27650401_INS [dm3] 3R_31824679_INS [dm6]	C	CAC	2.892e^-5	0.372	INTRON RhoGAP100F
2R	20437910	2R_20437910_SNP [dm3] 2R_24550387_SNP [dm6]	C	A	2.920e^-5	0.372	INTRON CG4622 & 1 other
2L	5888455	2L_5888455_SNP [dm3] 2L_5888455_SNP [dm6]	G	C	2.933e^-5	0.372	UPSTREAM CR44577 EXON CR44578
2L	1110694	2L_1110694_SNP [dm3] 2L_1110694_SNP [dm6]	C	T	3.001e^-5	0.372	INTRON CG14339
2L	1110719	2L_1110719_SNP [dm3] 2L_1110719_SNP [dm6]	G	T	3.001e^-5	0.372	INTRON CG14339
2L	1110726	2L_1110726_SNP [dm3] 2L_1110726_SNP [dm6]	G	A	3.001e^-5	0.372	INTRON CG14339
3R	19066892	3R_19066892_SNP [dm3] 3R_23241170_SNP [dm6]	T	G	3.020e^-5	0.372	INTRON CG4467
3L	19258372	3L_19258372_SNP [dm3] 3L_19265272_SNP [dm6]	G	T	3.033e^-5	0.372	NON_SYNONYMOUS_CODING CG9666 UTR_3_PRIME CG42374 UPSTREAM CG45081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6821413	3R_6821413_INS [dm3] 3R_10995691_INS [dm6]	C	CGTTAAGGC	3.067e^-5	0.372	INTRON CG34114
3L	18848470	3L_18848470_SNP [dm3] 3L_18855370_SNP [dm6]	A	G	3.102e^-5	0.372	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7188319	3L_7188319_SNP [dm3] 3L_7195219_SNP [dm6]	A	C	3.126e^-5	0.372	INTERGENIC
3L	2007662	3L_2007662_SNP [dm3] 3L_2007662_SNP [dm6]	G	C	3.143e^-5	0.372	INTERGENIC
X	16200921	X_16200921_SNP [dm3] X_16306888_SNP [dm6]	G	A	3.143e^-5	0.372	UTR_3_PRIME CG3679 UPSTREAM CR45485 DOWNSTREAM CG9914
3L	7188318	3L_7188318_SNP [dm3] 3L_7195218_SNP [dm6]	A	G	3.162e^-5	0.372	INTERGENIC
3L	10874067	3L_10874067_DEL [dm3] 3L_10880967_DEL [dm6]	GTGG	G	3.204e^-5	0.372	CODON_DELETION CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo
3L	12427739	3L_12427739_SNP [dm3] 3L_12434639_SNP [dm6]	T	C	3.242e^-5	0.372	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19066561	3R_19066561_SNP [dm3] 3R_23240839_SNP [dm6]	G	C	3.278e^-5	0.372	UPSTREAM CG4467 INTRON CG4467
3R	10648845	3R_10648845_SNP [dm3] 3R_14823123_SNP [dm6]	G	A	3.318e^-5	0.372	INTRON btsz	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	22218820	3L_22218820_SNP [dm3] 3L_22225720_SNP [dm6]	G	A	3.324e^-5	0.372	INTRON olf413 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22219473	3L_22219473_SNP [dm3] 3L_22226373_SNP [dm6]	A	C	3.324e^-5	0.372	UPSTREAM CR45035 INTRON olf413
2R	16172129	2R_16172129_SNP [dm3] 2R_20284624_SNP [dm6]	A	G	3.391e^-5	0.372	SYNONYMOUS_CODING CG16868
2L	2996258	2L_2996258_SNP [dm3] 2L_2996258_SNP [dm6]	G	C	3.423e^-5	0.372	NON_SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo
2L	1844376	2L_1844376_SNP [dm3] 2L_1844376_SNP [dm6]	G	A	3.444e^-5	0.372	NON_SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21376827	3R_21376827_SNP [dm3] 3R_25551105_SNP [dm6]	T	C	3.452e^-5	0.372	INTRON msi
3L	19786717	3L_19786717_SNP [dm3] 3L_19793617_SNP [dm6]	T	C	3.464e^-5	0.372	UPSTREAM HLH106 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	21535402	3L_21535402_SNP [dm3] 3L_21542302_SNP [dm6]	G	A	3.482e^-5	0.372	UPSTREAM CG33290 INTERGENIC
2L	4209793	2L_4209793_DEL [dm3] 2L_4209793_DEL [dm6]	TG	T	3.541e^-5	0.372	INTRON ft	TF binding site mE1_TFBS_inv
3L	968739	3L_968739_SNP [dm3] 3L_968739_SNP [dm6]	G	A	3.564e^-5	0.372	INTRON Glut1
3L	5405644	3L_5405644_SNP [dm3] 3L_5412544_SNP [dm6]	A	G	3.582e^-5	0.372	INTERGENIC
2R	12357261	2R_12357261_SNP [dm3] 2R_16469756_SNP [dm6]	T	A	3.588e^-5	0.372	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12357270	2R_12357270_SNP [dm3] 2R_16469765_SNP [dm6]	T	A	3.588e^-5	0.372	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10446069	2L_10446069_INS [dm3] 2L_10446069_INS [dm6]	G	GGTA	3.589e^-5	0.372	INTRON loh
3R	2312427	3R_2312427_SNP [dm3] 3R_6486705_SNP [dm6]	C	T	3.634e^-5	0.372	UPSTREAM CG15186 INTRON CG15186
3L	19262817	3L_19262817_INS [dm3] 3L_19269717_INS [dm6]	A	ATGGTTTA	3.663e^-5	0.372	UPSTREAM CG9629 DOWNSTREAM CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
2L	9718074	2L_9718074_SNP [dm3] 2L_9718074_SNP [dm6]	G	A	3.731e^-5	0.372	INTRON Nckx30C
3L	19247012	3L_19247012_SNP [dm3] 3L_19253912_SNP [dm6]	G	A	3.778e^-5	0.372	UTR_3_PRIME mRpL21 DOWNSTREAM mRpL21
3L	19250602	3L_19250602_SNP [dm3] 3L_19257502_SNP [dm6]	G	T	3.778e^-5	0.372	UTR_3_PRIME nes DOWNSTREAM nes & 1 other
3L	19254960	3L_19254960_SNP [dm3] 3L_19261860_SNP [dm6]	G	A	3.778e^-5	0.372	SYNONYMOUS_CODING Bet1 DOWNSTREAM CR45210 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19255197	3L_19255197_SNP [dm3] 3L_19262097_SNP [dm6]	T	C	3.778e^-5	0.372	SYNONYMOUS_CODING Bet1 DOWNSTREAM Max	TF binding site mE1_TFBS_HSA
3L	19256093	3L_19256093_SNP [dm3] 3L_19262993_SNP [dm6]	C	T	3.778e^-5	0.372	SYNONYMOUS_CODING Max UPSTREAM CG9666 & 1 other DOWNSTREAM Bet1	TF binding site mE1_TFBS_cad
3L	19259487	3L_19259487_INS [dm3] 3L_19266387_INS [dm6]	T	TAGAACGAAT	3.778e^-5	0.372	UTR_3_PRIME CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 2 others
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	3.778e^-5	0.372	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	19265411	3L_19265411_SNP [dm3] 3L_19272311_SNP [dm6]	C	G	3.778e^-5	0.372	NON_SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3L	19267199	3L_19267199_SNP [dm3] 3L_19274099_SNP [dm6]	A	G	3.778e^-5	0.372	UTR_3_PRIME CG14085	TF binding site mE1_TFBS_cad
3L	19267477	3L_19267477_DEL [dm3] 3L_19274377_DEL [dm6]	TTTC	A	3.778e^-5	0.372	DOWNSTREAM CG14085 INTERGENIC	TF binding site mE1_TFBS_cad
3L	19268169	3L_19268169_SNP [dm3] 3L_19275069_SNP [dm6]	A	C	3.778e^-5	0.372	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
3L	19268170	3L_19268170_SNP [dm3] 3L_19275070_SNP [dm6]	G	A	3.778e^-5	0.372	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
3L	9851876	3L_9851876_SNP [dm3] 3L_9858776_SNP [dm6]	A	G	3.791e^-5	0.372	SYNONYMOUS_CODING CG10809	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	7953850	3L_7953850_SNP [dm3] 3L_7960750_SNP [dm6]	G	A	3.796e^-5	0.372	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	3.876e^-5	0.378	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3R	27842711	3R_27842711_SNP [dm3] 3R_32016989_SNP [dm6]	C	G	4.040e^-5	0.391	EXON CR45557
3L	21472997	3L_21472997_SNP [dm3] 3L_21479897_SNP [dm6]	T	A	4.081e^-5	0.393	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12357378	2R_12357378_SNP [dm3] 2R_16469873_SNP [dm6]	G	T	4.114e^-5	0.394	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13090850	2R_13090850_SNP [dm3] 2R_17203345_SNP [dm6]	G	C	4.150e^-5	0.395	INTERGENIC
2R	17854813	2R_17854813_SNP [dm3] 2R_21967308_SNP [dm6]	C	T	4.162e^-5	0.395	INTRON ppk9
2L	12695592	2L_12695592_SNP [dm3] 2L_12695592_SNP [dm6]	C	A	4.253e^-5	0.399	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
3L	4514426	3L_4514426_SNP [dm3] 3L_4514426_SNP [dm6]	C	T	4.256e^-5	0.399	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
2L	8067290	2L_8067290_SNP [dm3] 2L_8067290_SNP [dm6]	T	C	4.265e^-5	0.399	SYNONYMOUS_CODING poe
3L	12472632	3L_12472632_SNP [dm3] 3L_12479532_SNP [dm6]	C	A	4.354e^-5	0.405	INTRON CG10663
3L	12090138	3L_12090138_SNP [dm3] 3L_12097038_SNP [dm6]	A	T	4.406e^-5	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16399909	2R_16399909_SNP [dm3] 2R_20512404_SNP [dm6]	A	T	4.407e^-5	0.406	DOWNSTREAM CR44648 & 2 others INTERGENIC
3R	19128898	3R_19128898_SNP [dm3] 3R_23303176_SNP [dm6]	A	C	4.495e^-5	0.41	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	19128915	3R_19128915_SNP [dm3] 3R_23303193_SNP [dm6]	G	A	4.495e^-5	0.41	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	17322122	2R_17322122_SNP [dm3] 2R_21434617_SNP [dm6]	G	A	4.577e^-5	0.412	INTRON Sdc
3L	6081546	3L_6081546_SNP [dm3] 3L_6088446_SNP [dm6]	T	C	4.585e^-5	0.412	INTRON CG13293	TF binding site mE1_TFBS_cad
3L	6081549	3L_6081549_SNP [dm3] 3L_6088449_SNP [dm6]	A	T	4.585e^-5	0.412	INTRON CG13293	TF binding site mE1_TFBS_cad
X	16201883	X_16201883_SNP [dm3] X_16307850_SNP [dm6]	G	T	4.688e^-5	0.419	SYNONYMOUS_CODING CG9914 DOWNSTREAM CG3679 EXON CR45485	TF binding site mE1_TFBS_cad
2R	20691135	2R_20691135_DEL [dm3] 2R_24803612_DEL [dm6]	CC	C	4.723e^-5	0.42	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	11013168	3R_11013168_SNP [dm3] 3R_15187446_SNP [dm6]	T	A	4.756e^-5	0.42	SYNONYMOUS_CODING Gyc88E
3R	26463756	3R_26463756_SNP [dm3] 3R_30638034_SNP [dm6]	T	A	4.798e^-5	0.42	INTERGENIC
3R	21376853	3R_21376853_SNP [dm3] 3R_25551131_SNP [dm6]	T	A	4.823e^-5	0.42	INTRON msi
3R	20921340	3R_20921340_SNP [dm3] 3R_25095618_SNP [dm6]	G	A	4.837e^-5	0.42	SYNONYMOUS_CODING fd96Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17908269	3R_17908269_SNP [dm3] 3R_22082547_SNP [dm6]	T	G	4.844e^-5	0.42	INTRON CG13408
3L	19252727	3L_19252727_SNP [dm3] 3L_19259627_SNP [dm6]	T	G	4.898e^-5	0.42	UPSTREAM CR45210 INTRON nes
3L	13319209	3L_13319209_SNP [dm3] 3L_13326109_SNP [dm6]	C	T	4.925e^-5	0.42	INTERGENIC
3L	13319219	3L_13319219_SNP [dm3] 3L_13326119_SNP [dm6]	A	T	4.925e^-5	0.42	INTERGENIC
3L	13319220	3L_13319220_SNP [dm3] 3L_13326120_SNP [dm6]	T	C	4.925e^-5	0.42	INTERGENIC
2R	17592678	2R_17592678_SNP [dm3] 2R_21705173_SNP [dm6]	A	C	4.997e^-5	0.423	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12357382	2R_12357382_SNP [dm3] 2R_16469877_SNP [dm6]	G	T	5.017e^-5	0.423	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	21474184	3L_21474184_SNP [dm3] 3L_21481084_SNP [dm6]	C	T	5.049e^-5	0.424	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2432743	3L_2432743_SNP [dm3] 3L_2432743_SNP [dm6]	G	A	5.081e^-5	0.425	INTRON CG45186
3R	21376954	3R_21376954_DEL [dm3] 3R_25551232_DEL [dm6]	CGAAA	T	5.154e^-5	0.429	INTRON msi
X	13126659	X_13126659_SNP [dm3] X_13232626_SNP [dm6]	A	C	5.331e^-5	0.439	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25158533	3R_25158533_SNP [dm3] 3R_29332811_SNP [dm6]	G	A	5.348e^-5	0.439	INTERGENIC
2R	16928388	2R_16928388_SNP [dm3] 2R_21040883_SNP [dm6]	G	A	5.349e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3858262	2R_3858262_SNP [dm3] 2R_7970757_SNP [dm6]	C	T	5.382e^-5	0.439	DOWNSTREAM nito INTRON CG8726
3R	22467411	3R_22467411_DEL [dm3] 3R_26641689_DEL [dm6]	AGCACGTCACTGGTACTTAT...	A	5.399e^-5	0.439	DOWNSTREAM TwdlD INTERGENIC
X	7673138	X_7673138_SNP [dm3] X_7779105_SNP [dm6]	T	A	5.447e^-5	0.44	INTRON CG32718
3R	27650212	3R_27650212_SNP [dm3] 3R_31824490_SNP [dm6]	T	C	5.501e^-5	0.44	INTRON RhoGAP100F
3L	19047028	3L_19047028_SNP [dm3] 3L_19053928_SNP [dm6]	T	A	5.520e^-5	0.44	UPSTREAM CG43407 INTERGENIC
3R	18961653	3R_18961653_INS [dm3] 3R_23135931_INS [dm6]	C	CGCACACAC	5.528e^-5	0.44	INTRON hh	regulatory region REDfly_CRMs
3R	27650420	3R_27650420_SNP [dm3] 3R_31824698_SNP [dm6]	A	T	5.535e^-5	0.44	INTRON RhoGAP100F
3L	11881324	3L_11881324_SNP [dm3] 3L_11888224_SNP [dm6]	T	C	5.551e^-5	0.44	SYNONYMOUS_CODING CG5897 INTRON CG44837
2L	1962561	2L_1962561_SNP [dm3] 2L_1962561_SNP [dm6]	T	C	5.602e^-5	0.442	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19253082	3L_19253082_SNP [dm3] 3L_19259982_SNP [dm6]	A	C	5.654e^-5	0.444	UPSTREAM CR45210 INTRON nes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	899999	3L_899999_SNP [dm3] 3L_899999_SNP [dm6]	T	C	5.671e^-5	0.444	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	12357350	2R_12357350_SNP [dm3] 2R_16469845_SNP [dm6]	C	T	5.710e^-5	0.445	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14726348	X_14726348_INS [dm3] X_14832315_INS [dm6]	T	TT	5.827e^-5	0.45	UPSTREAM CG14411 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	1100608	2L_1100608_SNP [dm3] 2L_1100608_SNP [dm6]	A	T	5.829e^-5	0.45	INTRON CG4629
3R	26464893	3R_26464893_DEL [dm3] 3R_30639171_DEL [dm6]	TGAAATTGTT	T	5.948e^-5	0.451	INTERGENIC
3R	26464924	3R_26464924_SNP [dm3] 3R_30639202_SNP [dm6]	A	T	5.948e^-5	0.451	INTERGENIC
2R	18677731	2R_18677731_SNP [dm3] 2R_22790226_SNP [dm6]	A	T	5.954e^-5	0.451	INTRON CG42260
2R	17772404	2R_17772404_SNP [dm3] 2R_21884899_SNP [dm6]	T	C	5.969e^-5	0.451	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20923013	3R_20923013_DEL [dm3] 3R_25097291_DEL [dm6]	GC	A	6.031e^-5	0.451	UPSTREAM CG33095 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15071948	2R_15071948_SNP [dm3] 2R_19184443_SNP [dm6]	G	T	6.033e^-5	0.451	INTRON hppy
3R	18961640	3R_18961640_SNP [dm3] 3R_23135918_SNP [dm6]	C	A	6.071e^-5	0.451	INTRON hh	regulatory region REDfly_CRMs
3L	19218937	3L_19218937_SNP [dm3] 3L_19225837_SNP [dm6]	C	T	6.164e^-5	0.451	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12695647	2L_12695647_SNP [dm3] 2L_12695647_SNP [dm6]	T	C	6.172e^-5	0.451	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
2R	17318915	2R_17318915_SNP [dm3] 2R_21431410_SNP [dm6]	C	G	6.175e^-5	0.451	INTRON Sdc
3L	4154393	3L_4154393_SNP [dm3] 3L_4154393_SNP [dm6]	A	G	6.177e^-5	0.451	SYNONYMOUS_CODING nab
2L	2845001	2L_2845001_SNP [dm3] 2L_2845001_SNP [dm6]	A	G	6.236e^-5	0.451	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117	TF binding site mE1_TFBS_cad
X	9700173	X_9700173_SNP [dm3] X_9806140_SNP [dm6]	G	A	6.248e^-5	0.451	INTRON CG32698
3R	20312978	3R_20312978_SNP [dm3] 3R_24487256_SNP [dm6]	C	T	6.259e^-5	0.451	SYNONYMOUS_CODING nAChRalpha2
3R	27860994	3R_27860994_INS [dm3] 3R_32035272_INS [dm6]	G	TT	6.259e^-5	0.451	INTERGENIC
3R	27885634	3R_27885634_SNP [dm3] 3R_32059912_SNP [dm6]	T	A	6.259e^-5	0.451	INTRON Map205	transposable element FlyBase
3R	27888725	3R_27888725_SNP [dm3] 3R_32063003_SNP [dm6]	T	A	6.259e^-5	0.451	INTRON Map205
2L	2996474	2L_2996474_SNP [dm3] 2L_2996474_SNP [dm6]	A	T	6.468e^-5	0.452	INTRON CG3558
2L	2996482	2L_2996482_SNP [dm3] 2L_2996482_SNP [dm6]	G	T	6.468e^-5	0.452	INTRON CG3558
X	14735943	X_14735943_SNP [dm3] X_14841910_SNP [dm6]	G	A	6.495e^-5	0.452	DOWNSTREAM CG12539 INTRON Flo2	TF binding site mE1_TFBS_HSA
3R	4964578	3R_4964578_SNP [dm3] 3R_9138856_SNP [dm6]	G	A	6.554e^-5	0.452	INTRON pum
2L	16383848	2L_16383848_INS [dm3] 2L_16383848_INS [dm6]	A	AAAGTGAATA	6.572e^-5	0.452	INTERGENIC
2L	15365072	2L_15365072_SNP [dm3] 2L_15365072_SNP [dm6]	C	G	6.580e^-5	0.452	INTERGENIC
3L	6082085	3L_6082085_SNP [dm3] 3L_6088985_SNP [dm6]	C	A	6.605e^-5	0.452	SYNONYMOUS_CODING CG13293	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9444785	X_9444785_DEL [dm3] X_9550752_DEL [dm6]	CCAGTGACTTGCGAC...	C	6.608e^-5	0.452	UTR_5_PRIME CG32700 DOWNSTREAM l_1_G0320
X	13823782	X_13823782_SNP [dm3] X_13929749_SNP [dm6]	T	A	6.722e^-5	0.452	INTRON mamo
3L	2250785	3L_2250785_SNP [dm3] 3L_2250785_SNP [dm6]	A	C	6.816e^-5	0.452	NON_SYNONYMOUS_CODING CG32305	TF binding site mE1_TFBS_cad
3L	17811314	3L_17811314_SNP [dm3] 3L_17818214_SNP [dm6]	G	A	6.885e^-5	0.452	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
2L	4127009	2L_4127009_SNP [dm3] 2L_4127009_SNP [dm6]	T	A	6.921e^-5	0.452	INTERGENIC
2R	11431279	2R_11431279_SNP [dm3] 2R_15543774_SNP [dm6]	C	T	6.952e^-5	0.452	SYNONYMOUS_CODING eIF2B-gamma DOWNSTREAM CG8192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10259978	3L_10259978_SNP [dm3] 3L_10266878_SNP [dm6]	A	T	6.952e^-5	0.452	NON_SYNONYMOUS_CODING can
3L	10342832	3L_10342832_SNP [dm3] 3L_10349732_SNP [dm6]	G	T	6.952e^-5	0.452	INTRON CR44327
3L	12089897	3L_12089897_SNP [dm3] 3L_12096797_SNP [dm6]	C	T	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12090994	3L_12090994_SNP [dm3] 3L_12097894_SNP [dm6]	G	A	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12090999	3L_12090999_SNP [dm3] 3L_12097899_SNP [dm6]	T	C	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12091014	3L_12091014_SNP [dm3] 3L_12097914_SNP [dm6]	A	C	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12091038	3L_12091038_SNP [dm3] 3L_12097938_SNP [dm6]	G	T	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14950248	3L_14950248_SNP [dm3] 3L_14957148_SNP [dm6]	C	G	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14951117	3L_14951117_DEL [dm3] 3L_14958017_DEL [dm6]	TTGCAAATAAATAAATAA...	T	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14951309	3L_14951309_SNP [dm3] 3L_14958209_SNP [dm6]	A	G	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14951319	3L_14951319_SNP [dm3] 3L_14958219_SNP [dm6]	T	C	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14952898	3L_14952898_SNP [dm3] 3L_14959798_SNP [dm6]	T	A	6.952e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21336778	3L_21336778_SNP [dm3] 3L_21343678_SNP [dm6]	T	C	6.952e^-5	0.452	UTR_5_PRIME CG7324 UPSTREAM CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14298619	3R_14298619_SNP [dm3] 3R_18472897_SNP [dm6]	A	G	6.952e^-5	0.452	INTRON fru
3R	14299272	3R_14299272_SNP [dm3] 3R_18473550_SNP [dm6]	C	T	6.952e^-5	0.452	INTRON fru	TF binding site BDTNP1_TFBS_dl
3R	19066380	3R_19066380_SNP [dm3] 3R_23240658_SNP [dm6]	G	A	7.041e^-5	0.455	UPSTREAM CG4467 INTRON CG4467
2R	12508832	2R_12508832_SNP [dm3] 2R_16621327_SNP [dm6]	A	G	7.133e^-5	0.455	SPLICE_SITE_REGION CG5065 SYNONYMOUS_CODING CG5065	TF binding site mE1_TFBS_cad
3L	13319262	3L_13319262_SNP [dm3] 3L_13326162_SNP [dm6]	C	A	7.133e^-5	0.455	INTERGENIC
3L	11468639	3L_11468639_SNP [dm3] 3L_11475539_SNP [dm6]	A	G	7.145e^-5	0.455	UTR_3_PRIME Vha16-2
3L	11468640	3L_11468640_SNP [dm3] 3L_11475540_SNP [dm6]	T	C	7.145e^-5	0.455	UTR_3_PRIME Vha16-2
X	2538020	X_2538020_SNP [dm3] X_2643987_SNP [dm6]	T	C	7.152e^-5	0.455	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5642589	2L_5642589_DEL [dm3] 2L_5642589_DEL [dm6]	GTTGGAAG	G	7.199e^-5	0.456	DOWNSTREAM mir-963 & 1 other INTRON CG31646
2L	5551878	2L_5551878_SNP [dm3] 2L_5551878_SNP [dm6]	C	T	7.227e^-5	0.456	START_GAINED CG18269 UTR_5_PRIME CG18269 DOWNSTREAM CG14013	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18481985	3R_18481985_SNP [dm3] 3R_22656263_SNP [dm6]	G	A	7.266e^-5	0.456	INTRON CG45058
3L	19196158	3L_19196158_SNP [dm3] 3L_19203058_SNP [dm6]	G	T	7.285e^-5	0.456	INTRON fz2
2R	7370902	2R_7370902_SNP [dm3] 2R_11483397_SNP [dm6]	C	T	7.288e^-5	0.456	INTRON inv
3L	16758682	3L_16758682_SNP [dm3] 3L_16765582_SNP [dm6]	A	C	7.332e^-5	0.457	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12508169	2R_12508169_SNP [dm3] 2R_16620664_SNP [dm6]	A	C	7.370e^-5	0.457	INTRON CG5065
3R	17309666	3R_17309666_SNP [dm3] 3R_21483944_SNP [dm6]	T	C	7.378e^-5	0.457	SPLICE_SITE_REGION CG7922 INTRON CG7922
2L	4428070	2L_4428070_SNP [dm3] 2L_4428070_SNP [dm6]	T	A	7.586e^-5	0.468	INTRON CG15431
3R	25814241	3R_25814241_SNP [dm3] 3R_29988519_SNP [dm6]	A	G	7.779e^-5	0.478	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo
X	16692881	X_16692881_SNP [dm3] X_16798848_SNP [dm6]	T	G	7.855e^-5	0.48	SYNONYMOUS_CODING CG9132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18679485	2R_18679485_SNP [dm3] 2R_22791980_SNP [dm6]	T	G	7.870e^-5	0.48	INTRON CG42260
2R	12357362	2R_12357362_SNP [dm3] 2R_16469857_SNP [dm6]	C	A	7.983e^-5	0.485	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19137541	3R_19137541_SNP [dm3] 3R_23311819_SNP [dm6]	C	T	8.033e^-5	0.485	INTRON pnt
3R	19137607	3R_19137607_SNP [dm3] 3R_23311885_SNP [dm6]	A	C	8.033e^-5	0.485	INTRON pnt
2R	1037469	2R_1037469_SNP [dm3] 2R_5149964_SNP [dm6]	T	G	8.044e^-5	0.485	INTRON Atf6
2L	16383853	2L_16383853_SNP [dm3] 2L_16383853_SNP [dm6]	A	T	8.158e^-5	0.485	INTERGENIC
2R	9588517	2R_9588517_SNP [dm3] 2R_13701012_SNP [dm6]	G	C	8.242e^-5	0.485	INTRON fas
3L	16758681	3L_16758681_SNP [dm3] 3L_16765581_SNP [dm6]	T	A	8.252e^-5	0.485	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12508375	2R_12508375_SNP [dm3] 2R_16620870_SNP [dm6]	G	A	8.259e^-5	0.485	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	7034838	2R_7034838_SNP [dm3] 2R_11147333_SNP [dm6]	A	T	8.263e^-5	0.485	DOWNSTREAM CG12391 & 1 other INTRON CG13229
3L	19785943	3L_19785943_SNP [dm3] 3L_19792843_SNP [dm6]	A	T	8.282e^-5	0.485	INTRON Gyc76C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	19786463	3L_19786463_SNP [dm3] 3L_19793363_SNP [dm6]	A	G	8.282e^-5	0.485	UPSTREAM HLH106 INTRON Gyc76C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19786862	3L_19786862_SNP [dm3] 3L_19793762_SNP [dm6]	A	G	8.282e^-5	0.485	UPSTREAM HLH106 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	7158001	3L_7158001_SNP [dm3] 3L_7164901_SNP [dm6]	A	T	8.285e^-5	0.485	INTRON Dscam2
3R	17390234	3R_17390234_SNP [dm3] 3R_21564512_SNP [dm6]	T	C	8.345e^-5	0.486	INTERGENIC
3R	20922973	3R_20922973_INS [dm3] 3R_25097251_INS [dm6]	A	AATAATATAATATAATA...	8.354e^-5	0.486	UPSTREAM CG33095 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16400198	2R_16400198_SNP [dm3] 2R_20512693_SNP [dm6]	C	A	8.494e^-5	0.491	DOWNSTREAM CG13426 & 1 other INTERGENIC
3R	20799234	3R_20799234_SNP [dm3] 3R_24973512_SNP [dm6]	G	A	8.595e^-5	0.491	INTERGENIC
2L	10369256	2L_10369256_SNP [dm3] 2L_10369256_SNP [dm6]	A	G	8.636e^-5	0.491	INTRON rho-5	TF binding site mE1_TFBS_cad
2L	16384092	2L_16384092_SNP [dm3] 2L_16384092_SNP [dm6]	T	A	8.636e^-5	0.491	INTERGENIC
2R	19111106	2R_19111106_SNP [dm3] 2R_23223583_SNP [dm6]	A	C	8.636e^-5	0.491	INTERGENIC
2R	19111107	2R_19111107_SNP [dm3] 2R_23223584_SNP [dm6]	A	G	8.636e^-5	0.491	INTERGENIC
3L	4352895	3L_4352895_SNP [dm3] 3L_4352895_SNP [dm6]	A	C	8.743e^-5	0.491	INTRON Cip4
3R	23195593	3R_23195593_SNP [dm3] 3R_27369871_SNP [dm6]	A	G	8.744e^-5	0.491	UPSTREAM CR43476 INTRON CG42534
3R	27238760	3R_27238760_SNP [dm3] 3R_31413038_SNP [dm6]	A	G	8.750e^-5	0.491	INTRON Gprk2
2L	16902783	2L_16902783_SNP [dm3] 2L_16902783_SNP [dm6]	C	T	8.761e^-5	0.491	SYNONYMOUS_CODING tweek UPSTREAM CG12288	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16902881	2L_16902881_SNP [dm3] 2L_16902881_SNP [dm6]	A	T	8.761e^-5	0.491	UPSTREAM CG12288 INTRON tweek	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19139886	3R_19139886_INS [dm3] 3R_23314164_INS [dm6]	C	CAC	8.774e^-5	0.491	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14951145	3L_14951145_SNP [dm3] 3L_14958045_SNP [dm6]	G	T	8.810e^-5	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	11349699	3L_11349699_SNP [dm3] 3L_11356599_SNP [dm6]	T	A	8.979e^-5	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5330008	3L_5330008_SNP [dm3] 3L_5336908_SNP [dm6]	G	A	9.024e^-5	0.491	INTERGENIC
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	9.031e^-5	0.491	INTRON AstA-R1
3R	27863901	3R_27863901_SNP [dm3] 3R_32038179_SNP [dm6]	C	A	9.160e^-5	0.491	UPSTREAM CG2053 INTERGENIC
3R	27882562	3R_27882562_SNP [dm3] 3R_32056840_SNP [dm6]	G	A	9.160e^-5	0.491	UTR_3_PRIME Map205 DOWNSTREAM Map205
3R	27887920	3R_27887920_SNP [dm3] 3R_32062198_SNP [dm6]	G	A	9.160e^-5	0.491	INTRON Map205
X	2280704	X_2280704_SNP [dm3] X_2386671_SNP [dm6]	C	T	9.160e^-5	0.491	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16162116	X_16162116_SNP [dm3] X_16268083_SNP [dm6]	C	T	9.254e^-5	0.491	SYNONYMOUS_CODING kat80
2R	14825260	2R_14825260_SNP [dm3] 2R_18937755_SNP [dm6]	G	A	9.303e^-5	0.491	INTRON sano
2L	2996480	2L_2996480_SNP [dm3] 2L_2996480_SNP [dm6]	A	G	9.308e^-5	0.491	INTRON CG3558
3R	27649517	3R_27649517_SNP [dm3] 3R_31823795_SNP [dm6]	A	G	9.369e^-5	0.491	INTRON RhoGAP100F
3L	13323386	3L_13323386_SNP [dm3] 3L_13330286_SNP [dm6]	A	G	9.409e^-5	0.491	DOWNSTREAM CG14113 INTERGENIC
3R	10883469	3R_10883469_SNP [dm3] 3R_15057747_SNP [dm6]	T	G	9.729e^-5	0.491	INTRON dpr9
2R	6005075	2R_6005075_SNP [dm3] 2R_10117570_SNP [dm6]	A	G	9.732e^-5	0.491	UPSTREAM dmpd DOWNSTREAM Pfk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5882926	2L_5882926_SNP [dm3] 2L_5882926_SNP [dm6]	C	T	9.733e^-5	0.491	UPSTREAM CG44574 INTERGENIC
3R	26432474	3R_26432474_SNP [dm3] 3R_30606752_SNP [dm6]	A	G	9.745e^-5	0.491	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	4154277	3L_4154277_SNP [dm3] 3L_4154277_SNP [dm6]	G	T	9.770e^-5	0.491	INTRON nab
2L	1412020	2L_1412020_SNP [dm3] 2L_1412020_SNP [dm6]	C	A	9.773e^-5	0.491	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	6082294	3L_6082294_SNP [dm3] 3L_6089194_SNP [dm6]	C	A	9.795e^-5	0.491	INTRON CG13293	TF binding site mE1_TFBS_cad
3R	19138866	3R_19138866_SNP [dm3] 3R_23313144_SNP [dm6]	A	T	9.796e^-5	0.491	INTRON pnt
3R	19139955	3R_19139955_SNP [dm3] 3R_23314233_SNP [dm6]	G	A	9.796e^-5	0.491	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6676620	3L_6676620_SNP [dm3] 3L_6683520_SNP [dm6]	C	T	9.806e^-5	0.491	INTERGENIC
X	3251584	X_3251584_SNP [dm3] X_3357551_SNP [dm6]	G	A	9.892e^-5	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19645968	2R_19645968_SNP [dm3] 2R_23758445_SNP [dm6]	A	T	9.918e^-5	0.491	INTRON CG9850
3L	7897140	3L_7897140_SNP [dm3] 3L_7904040_SNP [dm6]	C	A	9.976e^-5	0.491	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	3156010	3L_3156010_SNP [dm3] 3L_3156010_SNP [dm6]	G	C	9.987e^-5	0.491	SYNONYMOUS_CODING BtbVII DOWNSTREAM BtbVII	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	14992192	3L_14992192_SNP [dm3] 3L_14999092_SNP [dm6]	C	T	1.004e^-4	0.491	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19046985	3L_19046985_SNP [dm3] 3L_19053885_SNP [dm6]	G	A	1.015e^-4	0.491	UPSTREAM CG43407 INTERGENIC
3R	17309265	3R_17309265_SNP [dm3] 3R_21483543_SNP [dm6]	C	T	1.021e^-4	0.491	SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_sens
3R	6821407	3R_6821407_DEL [dm3] 3R_10995685_DEL [dm6]	CTTGA	C	1.031e^-4	0.491	INTRON CG34114
3L	5473038	3L_5473038_SNP [dm3] 3L_5479938_SNP [dm6]	G	A	1.031e^-4	0.491	INTRON CG4835	TF binding site mE1_TFBS_inv
3L	16859202	3L_16859202_SNP [dm3] 3L_16866102_SNP [dm6]	A	C	1.033e^-4	0.491	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10303109	3L_10303109_SNP [dm3] 3L_10310009_SNP [dm6]	A	G	1.037e^-4	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14127771	2L_14127771_SNP [dm3] 2L_14127771_SNP [dm6]	C	A	1.043e^-4	0.491	INTERGENIC
X	16847040	X_16847040_SNP [dm3] X_16953007_SNP [dm6]	T	C	1.049e^-4	0.491	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18847276	3L_18847276_SNP [dm3] 3L_18854176_SNP [dm6]	A	C	1.058e^-4	0.491	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	1.058e^-4	0.491	INTRON rgn
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	1.058e^-4	0.491	INTRON rgn
3L	7158191	3L_7158191_SNP [dm3] 3L_7165091_SNP [dm6]	C	T	1.058e^-4	0.491	SYNONYMOUS_CODING Dscam2
3R	18594010	3R_18594010_SNP [dm3] 3R_22768288_SNP [dm6]	C	G	1.058e^-4	0.491	NON_SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
3R	18594019	3R_18594019_SNP [dm3] 3R_22768297_SNP [dm6]	T	C	1.058e^-4	0.491	NON_SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
3R	20561171	3R_20561171_SNP [dm3] 3R_24735449_SNP [dm6]	C	A	1.058e^-4	0.491	INTRON tok
3R	25825305	3R_25825305_DEL [dm3] 3R_29999583_DEL [dm6]	GATCACTTAGCTAGAGCT...	G	1.058e^-4	0.491	UTR_3_PRIME CG11504 UPSTREAM CG34298 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25825608	3R_25825608_SNP [dm3] 3R_29999886_SNP [dm6]	G	T	1.058e^-4	0.491	NON_SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site mE1_TFBS_cad
3R	25827441	3R_25827441_SNP [dm3] 3R_30001719_SNP [dm6]	C	T	1.058e^-4	0.491	INTRON Tace	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25831053	3R_25831053_SNP [dm3] 3R_30005331_SNP [dm6]	G	A	1.058e^-4	0.491	SYNONYMOUS_CODING Nlp UPSTREAM CG7911 DOWNSTREAM CG7912	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
4	530135	4_530135_SNP [dm3] 4_509509_SNP [dm6]	C	T	1.058e^-4	0.491	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19139894	3R_19139894_SNP [dm3] 3R_23314172_SNP [dm6]	C	T	1.066e^-4	0.491	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19787674	3L_19787674_SNP [dm3] 3L_19794574_SNP [dm6]	G	T	1.074e^-4	0.491	UTR_5_PRIME HLH106 INTRON HLH106
2L	15543375	2L_15543375_SNP [dm3] 2L_15543375_SNP [dm6]	T	C	1.094e^-4	0.491	INTERGENIC
2L	14068598	2L_14068598_SNP [dm3] 2L_14068598_SNP [dm6]	C	A	1.095e^-4	0.491	INTRON nAChRalpha5
3L	9556863	3L_9556863_SNP [dm3] 3L_9563763_SNP [dm6]	A	T	1.097e^-4	0.491	INTRON CG42673
3R	13832952	3R_13832952_SNP [dm3] 3R_18007230_SNP [dm6]	G	A	1.097e^-4	0.491	INTRON cpo	TF binding site BDTNP1_TFBS_dl
3R	13832956	3R_13832956_SNP [dm3] 3R_18007234_SNP [dm6]	A	T	1.097e^-4	0.491	INTRON cpo	TF binding site BDTNP1_TFBS_dl
3R	14094564	3R_14094564_DEL [dm3] 3R_18268842_DEL [dm6]	CAGGTTT	C	1.097e^-4	0.491	INTRON CG18599
3R	14094676	3R_14094676_SNP [dm3] 3R_18268954_SNP [dm6]	A	G	1.097e^-4	0.491	INTRON CG18599	TF binding site mE1_TFBS_inv
3R	14680340	3R_14680340_SNP [dm3] 3R_18854618_SNP [dm6]	C	T	1.097e^-4	0.491	INTERGENIC
2R	19574430	2R_19574430_SNP [dm3] 2R_23686907_SNP [dm6]	G	T	1.097e^-4	0.491	INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17293313	2L_17293313_SNP [dm3] 2L_17293313_SNP [dm6]	T	C	1.102e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19066568	3R_19066568_SNP [dm3] 3R_23240846_SNP [dm6]	A	T	1.106e^-4	0.491	UPSTREAM CG4467 INTRON CG4467
3R	17928469	3R_17928469_SNP [dm3] 3R_22102747_SNP [dm6]	T	G	1.116e^-4	0.491	UPSTREAM CG13407 INTRON CG5778
3R	25185612	3R_25185612_SNP [dm3] 3R_29359890_SNP [dm6]	T	C	1.119e^-4	0.491	INTERGENIC
3L	980531	3L_980531_SNP [dm3] 3L_980531_SNP [dm6]	G	A	1.126e^-4	0.491	UTR_3_PRIME Glut1 INTRON Glut1
2R	16307740	2R_16307740_SNP [dm3] 2R_20420235_SNP [dm6]	G	A	1.131e^-4	0.491	INTERGENIC
2L	12962638	2L_12962638_INS [dm3] 2L_12962638_INS [dm6]	T	TGT	1.135e^-4	0.491	INTERGENIC
3L	6081471	3L_6081471_SNP [dm3] 3L_6088371_SNP [dm6]	A	C	1.135e^-4	0.491	INTRON CG13293	TF binding site mE1_TFBS_cad
X	7673075	X_7673075_SNP [dm3] X_7779042_SNP [dm6]	G	A	1.141e^-4	0.491	NON_SYNONYMOUS_CODING CG32718
3R	13902596	3R_13902596_SNP [dm3] 3R_18076874_SNP [dm6]	A	G	1.145e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14832546	2R_14832546_SNP [dm3] 2R_18945041_SNP [dm6]	G	A	1.147e^-4	0.491	INTRON sano
2L	11030467	2L_11030467_SNP [dm3] 2L_11030467_SNP [dm6]	C	A	1.150e^-4	0.491	INTRON Samuel	TF binding site mE1_TFBS_cad
2R	20315518	2R_20315518_SNP [dm3] 2R_24427995_SNP [dm6]	A	T	1.163e^-4	0.491	UTR_5_PRIME prom
2L	10526019	2L_10526019_SNP [dm3] 2L_10526019_SNP [dm6]	C	T	1.164e^-4	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11184755	3L_11184755_SNP [dm3] 3L_11191655_SNP [dm6]	A	G	1.166e^-4	0.491	INTRON GlcAT-P
2L	18933865	2L_18933865_SNP [dm3] 2L_18933865_SNP [dm6]	G	A	1.170e^-4	0.491	INTRON ssp3
X	15266986	X_15266986_SNP [dm3] X_15372953_SNP [dm6]	A	G	1.171e^-4	0.491	INTRON acj6	TF binding site BDTNP1_TFBS_dl
X	15266988	X_15266988_SNP [dm3] X_15372955_SNP [dm6]	G	A	1.171e^-4	0.491	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3L	21532625	3L_21532625_SNP [dm3] 3L_21539525_SNP [dm6]	T	A	1.172e^-4	0.491	UPSTREAM VhaM9.7-b & 1 other DOWNSTREAM Rpn10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15955493	3R_15955493_DEL [dm3] 3R_20129771_DEL [dm6]	AA	A	1.190e^-4	0.491	INTERGENIC
2L	11562751	2L_11562751_SNP [dm3] 2L_11562751_SNP [dm6]	G	A	1.191e^-4	0.491	DOWNSTREAM CR44495 INTERGENIC
X	14292961	X_14292961_SNP [dm3] X_14398928_SNP [dm6]	G	A	1.191e^-4	0.491	INTRON dpr8
3L	9850436	3L_9850436_SNP [dm3] 3L_9857336_SNP [dm6]	A	G	1.197e^-4	0.491	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9850483	3L_9850483_INS [dm3] 3L_9857383_INS [dm6]	G	GA	1.197e^-4	0.491	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9850488	3L_9850488_SNP [dm3] 3L_9857388_SNP [dm6]	A	T	1.197e^-4	0.491	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14011932	2L_14011932_SNP [dm3] 2L_14011932_SNP [dm6]	G	T	1.198e^-4	0.491	INTERGENIC
3R	23094933	3R_23094933_SNP [dm3] 3R_27269211_SNP [dm6]	G	A	1.200e^-4	0.491	SYNONYMOUS_CODING l_3_mbt	TF binding site mE1_TFBS_chinmo
X	12099252	X_12099252_INS [dm3] X_12205219_INS [dm6]	T	AG	1.200e^-4	0.491	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	12099254	X_12099254_SNP [dm3] X_12205221_SNP [dm6]	G	T	1.200e^-4	0.491	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	14825710	2R_14825710_SNP [dm3] 2R_18938205_SNP [dm6]	T	C	1.202e^-4	0.491	INTRON sano
3R	27695441	3R_27695441_DEL [dm3] 3R_31869719_DEL [dm6]	ACGGCGA	A	1.209e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27791983	3R_27791983_SNP [dm3] 3R_31966261_SNP [dm6]	G	T	1.209e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	27792214	3R_27792214_SNP [dm3] 3R_31966492_SNP [dm6]	A	G	1.209e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	27792259	3R_27792259_SNP [dm3] 3R_31966537_SNP [dm6]	A	G	1.209e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	21015400	3R_21015400_SNP [dm3] 3R_25189678_SNP [dm6]	T	C	1.215e^-4	0.491	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	6081507	3L_6081507_DEL [dm3] 3L_6088407_DEL [dm6]	GA	G	1.223e^-4	0.491	INTRON CG13293	TF binding site mE1_TFBS_cad
2R	16400205	2R_16400205_SNP [dm3] 2R_20512700_SNP [dm6]	A	C	1.231e^-4	0.491	UTR_3_PRIME CG13426 DOWNSTREAM CR44649
2R	6082672	2R_6082672_SNP [dm3] 2R_10195167_SNP [dm6]	G	A	1.232e^-4	0.491	INTERGENIC
3R	19529213	3R_19529213_SNP [dm3] 3R_23703491_SNP [dm6]	C	T	1.235e^-4	0.491	SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19218885	3L_19218885_DEL [dm3] 3L_19225785_DEL [dm6]	GG	G	1.243e^-4	0.491	INTRON fz2	TF binding site mE1_TFBS_inv
3L	7127009	3L_7127009_SNP [dm3] 3L_7133909_SNP [dm6]	C	A	1.255e^-4	0.491	UPSTREAM melt DOWNSTREAM Dbi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7134442	3L_7134442_SNP [dm3] 3L_7141342_SNP [dm6]	G	C	1.255e^-4	0.491	INTRON melt
3L	11873698	3L_11873698_SNP [dm3] 3L_11880598_SNP [dm6]	C	T	1.258e^-4	0.491	SYNONYMOUS_CODING CG14128 UPSTREAM CCDC151 INTRON CG44837
3L	22307762	3L_22307762_SNP [dm3] 3L_22314662_SNP [dm6]	C	T	1.259e^-4	0.491	INTRON Ten-m
X	13823784	X_13823784_SNP [dm3] X_13929751_SNP [dm6]	T	C	1.260e^-4	0.491	INTRON mamo
X	13823789	X_13823789_INS [dm3] X_13929756_INS [dm6]	A	AGCCAAA	1.260e^-4	0.491	INTRON mamo
3L	2275704	3L_2275704_INS [dm3] 3L_2275704_INS [dm6]	G	GGG	1.265e^-4	0.491	UPSTREAM yellow-g2 INTERGENIC
3L	22220392	3L_22220392_SNP [dm3] 3L_22227292_SNP [dm6]	C	T	1.265e^-4	0.491	INTRON olf413
3R	27244071	3R_27244071_SNP [dm3] 3R_31418349_SNP [dm6]	G	C	1.275e^-4	0.491	INTRON Gprk2
3R	27244116	3R_27244116_SNP [dm3] 3R_31418394_SNP [dm6]	T	C	1.275e^-4	0.491	INTRON Gprk2
3R	27244307	3R_27244307_INS [dm3] 3R_31418585_INS [dm6]	T	TTCGTTAGCGCGGGCAT...	1.275e^-4	0.491	INTRON Gprk2
3R	27244317	3R_27244317_INS [dm3] 3R_31418595_INS [dm6]	G	GG	1.275e^-4	0.491	INTRON Gprk2
3R	27244383	3R_27244383_SNP [dm3] 3R_31418661_SNP [dm6]	T	A	1.275e^-4	0.491	INTRON Gprk2
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	1.283e^-4	0.491	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	5881777	2L_5881777_SNP [dm3] 2L_5881777_SNP [dm6]	T	A	1.288e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17994030	2L_17994030_SNP [dm3] 2L_17994030_SNP [dm6]	T	C	1.291e^-4	0.491	EXON CR44767
3L	12621296	3L_12621296_INS [dm3] 3L_12628196_INS [dm6]	A	AAACACA	1.291e^-4	0.491	EXON CR32111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22218546	3L_22218546_INS [dm3] 3L_22225446_INS [dm6]	G	GACGG	1.293e^-4	0.491	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl
2R	7370910	2R_7370910_SNP [dm3] 2R_11483405_SNP [dm6]	T	C	1.300e^-4	0.491	INTRON inv
2L	1694203	2L_1694203_INS [dm3] 2L_1694203_INS [dm6]	G	GTG	1.313e^-4	0.491	INTRON chinmo
3L	7188323	3L_7188323_SNP [dm3] 3L_7195223_SNP [dm6]	T	C	1.313e^-4	0.491	INTERGENIC
3L	15169293	3L_15169293_SNP [dm3] 3L_15176193_SNP [dm6]	T	G	1.314e^-4	0.491	INTERGENIC
2R	7227816	2R_7227816_SNP [dm3] 2R_11340311_SNP [dm6]	A	C	1.318e^-4	0.491	UPSTREAM zetaTry DOWNSTREAM etaTry INTERGENIC	TF binding site mE1_TFBS_cad
3R	25105387	3R_25105387_INS [dm3] 3R_29279665_INS [dm6]	T	TCAT	1.318e^-4	0.491	INTERGENIC	regulatory region REDfly_CRMs
3L	19786923	3L_19786923_SNP [dm3] 3L_19793823_SNP [dm6]	T	A	1.323e^-4	0.491	UPSTREAM HLH106 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	7188327	3L_7188327_SNP [dm3] 3L_7195227_SNP [dm6]	G	T	1.332e^-4	0.491	INTERGENIC
2R	16274575	2R_16274575_SNP [dm3] 2R_20387070_SNP [dm6]	G	T	1.333e^-4	0.491	INTERGENIC
3R	27649599	3R_27649599_SNP [dm3] 3R_31823877_SNP [dm6]	A	T	1.334e^-4	0.491	INTRON RhoGAP100F
3R	25813956	3R_25813956_SNP [dm3] 3R_29988234_SNP [dm6]	C	T	1.347e^-4	0.491	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	3405915	3R_3405915_SNP [dm3] 3R_7580193_SNP [dm6]	C	T	1.347e^-4	0.491	INTRON CG34127
2L	16842830	2L_16842830_SNP [dm3] 2L_16842830_SNP [dm6]	T	G	1.348e^-4	0.491	UTR_3_PRIME CG13284 DOWNSTREAM SclB & 2 others
X	12205794	X_12205794_SNP [dm3] X_12311761_SNP [dm6]	A	T	1.368e^-4	0.491	INTRON Ten-a
2R	17128384	2R_17128384_SNP [dm3] 2R_21240879_SNP [dm6]	A	T	1.377e^-4	0.491	INTRON ASPP	TF binding site mE1_TFBS_sens
3L	17288610	3L_17288610_SNP [dm3] 3L_17295510_SNP [dm6]	C	G	1.377e^-4	0.491	INTERGENIC
2R	4786217	2R_4786217_SNP [dm3] 2R_8898712_SNP [dm6]	A	T	1.386e^-4	0.491	UTR_3_PRIME Sec31 UPSTREAM CR45202 DOWNSTREAM ana2
2R	17592967	2R_17592967_SNP [dm3] 2R_21705462_SNP [dm6]	T	A	1.390e^-4	0.491	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	10867483	2R_10867483_SNP [dm3] 2R_14979978_SNP [dm6]	A	G	1.390e^-4	0.491	UTR_3_PRIME ckn
2R	10867499	2R_10867499_SNP [dm3] 2R_14979994_SNP [dm6]	A	T	1.390e^-4	0.491	UTR_3_PRIME ckn
2R	4967726	2R_4967726_SNP [dm3] 2R_9080221_SNP [dm6]	G	A	1.395e^-4	0.491	SPLICE_SITE_REGION CG8083 INTRON CG8083
3L	15944889	3L_15944889_SNP [dm3] 3L_15951789_SNP [dm6]	T	C	1.396e^-4	0.491	INTRON Pka-C3
3R	24919093	3R_24919093_SNP [dm3] 3R_29093371_SNP [dm6]	T	C	1.397e^-4	0.491	INTRON CG11873
3L	13319319	3L_13319319_SNP [dm3] 3L_13326219_SNP [dm6]	C	A	1.403e^-4	0.491	INTERGENIC
3L	13319320	3L_13319320_SNP [dm3] 3L_13326220_SNP [dm6]	C	G	1.403e^-4	0.491	INTERGENIC
3L	13319470	3L_13319470_SNP [dm3] 3L_13326370_SNP [dm6]	A	C	1.404e^-4	0.491	INTERGENIC
3L	13319474	3L_13319474_SNP [dm3] 3L_13326374_SNP [dm6]	T	G	1.404e^-4	0.491	INTERGENIC
3L	2419982	3L_2419982_SNP [dm3] 3L_2419982_SNP [dm6]	G	A	1.407e^-4	0.491	INTRON CG45186
2L	3466443	2L_3466443_SNP [dm3] 2L_3466443_SNP [dm6]	G	T	1.411e^-4	0.491	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27649794	3R_27649794_SNP [dm3] 3R_31824072_SNP [dm6]	A	T	1.411e^-4	0.491	INTRON RhoGAP100F
X	20968068	X_20968068_SNP [dm3] X_21097041_SNP [dm6]	C	T	1.428e^-4	0.491	INTRON stg1 & 2 others
3R	14102228	3R_14102228_SNP [dm3] 3R_18276506_SNP [dm6]	G	A	1.428e^-4	0.491	INTRON eIF-1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6475010	X_6475010_SNP [dm3] X_6580977_SNP [dm6]	T	C	1.435e^-4	0.491	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4273033	2L_4273033_SNP [dm3] 2L_4273033_SNP [dm6]	A	G	1.435e^-4	0.491	INTERGENIC
2R	6238689	2R_6238689_SNP [dm3] 2R_10351184_SNP [dm6]	G	T	1.438e^-4	0.491	DOWNSTREAM CG43172 & 1 other INTRON CG42732
3L	4971561	3L_4971561_SNP [dm3] 3L_4971561_SNP [dm6]	G	A	1.439e^-4	0.491	INTRON Con
3L	10351661	3L_10351661_SNP [dm3] 3L_10358561_SNP [dm6]	A	G	1.442e^-4	0.491	INTRON CR44327
X	15266989	X_15266989_SNP [dm3] X_15372956_SNP [dm6]	G	A	1.452e^-4	0.491	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3R	26433518	3R_26433518_SNP [dm3] 3R_30607796_SNP [dm6]	A	T	1.453e^-4	0.491	INTRON CG31016
3R	26433601	3R_26433601_SNP [dm3] 3R_30607879_SNP [dm6]	A	G	1.453e^-4	0.491	NON_SYNONYMOUS_CODING CG31016
3L	14930132	3L_14930132_SNP [dm3] 3L_14937032_SNP [dm6]	A	T	1.458e^-4	0.491	INTRON DCX-EMAP
2R	15323487	2R_15323487_SNP [dm3] 2R_19435982_SNP [dm6]	G	A	1.461e^-4	0.491	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_dl
2L	18912294	2L_18912294_SNP [dm3] 2L_18912294_SNP [dm6]	G	A	1.462e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23463789	3L_23463789_SNP [dm3] 3L_23470689_SNP [dm6]	T	C	1.464e^-4	0.491	INTERGENIC
3L	23470886	3L_23470886_SNP [dm3] 3L_23477786_SNP [dm6]	C	T	1.464e^-4	0.491	INTERGENIC	transposable element FlyBase
3L	23471556	3L_23471556_SNP [dm3] 3L_23478456_SNP [dm6]	C	T	1.464e^-4	0.491	INTERGENIC	transposable element FlyBase
3L	23475381	3L_23475381_SNP [dm3] 3L_23482281_SNP [dm6]	A	T	1.464e^-4	0.491	INTERGENIC	transposable element FlyBase
2L	12976787	2L_12976787_SNP [dm3] 2L_12976787_SNP [dm6]	C	T	1.467e^-4	0.491	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18686853	3L_18686853_SNP [dm3] 3L_18693753_SNP [dm6]	G	A	1.472e^-4	0.491	UPSTREAM CG6893 EXON CR43987
X	18186132	X_18186132_SNP [dm3] X_18292099_SNP [dm6]	G	C	1.474e^-4	0.491	UPSTREAM CR15061 INTERGENIC
3R	17624557	3R_17624557_SNP [dm3] 3R_21798835_SNP [dm6]	T	G	1.478e^-4	0.491	UPSTREAM mir-999 & 1 other INTRON CASK
2L	9940977	2L_9940977_SNP [dm3] 2L_9940977_SNP [dm6]	G	A	1.479e^-4	0.491	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619
3R	21726369	3R_21726369_SNP [dm3] 3R_25900647_SNP [dm6]	G	T	1.483e^-4	0.491	SYNONYMOUS_CODING CG31091 DOWNSTREAM MCO3
3L	5405664	3L_5405664_DEL [dm3] 3L_5412564_DEL [dm6]	AA	A	1.508e^-4	0.491	INTERGENIC
3L	5405693	3L_5405693_SNP [dm3] 3L_5412593_SNP [dm6]	C	G	1.508e^-4	0.491	INTERGENIC
3R	6495842	3R_6495842_SNP [dm3] 3R_10670120_SNP [dm6]	T	C	1.512e^-4	0.491	INTERGENIC
3L	19785613	3L_19785613_SNP [dm3] 3L_19792513_SNP [dm6]	C	G	1.514e^-4	0.491	INTRON Gyc76C & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	5306631	3R_5306631_SNP [dm3] 3R_9480909_SNP [dm6]	A	G	1.517e^-4	0.491	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
2L	12963009	2L_12963009_SNP [dm3] 2L_12963009_SNP [dm6]	T	C	1.523e^-4	0.491	INTERGENIC
3L	2191823	3L_2191823_SNP [dm3] 3L_2191823_SNP [dm6]	G	A	1.524e^-4	0.491	UPSTREAM CG5707 INTRON CG5707
3L	19787567	3L_19787567_SNP [dm3] 3L_19794467_SNP [dm6]	A	C	1.532e^-4	0.491	UPSTREAM CG42637 & 1 other INTRON HLH106	TF binding site BDTNP1_TFBS_dl
3L	21999750	3L_21999750_SNP [dm3] 3L_22006650_SNP [dm6]	G	C	1.539e^-4	0.491	INTERGENIC
2L	4823540	2L_4823540_SNP [dm3] 2L_4823540_SNP [dm6]	C	T	1.544e^-4	0.491	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	18428363	2R_18428363_SNP [dm3] 2R_22540858_SNP [dm6]	A	C	1.553e^-4	0.491	SYNONYMOUS_CODING px
3R	13590615	3R_13590615_SNP [dm3] 3R_17764893_SNP [dm6]	T	A	1.554e^-4	0.491	INTERGENIC
X	16847022	X_16847022_SNP [dm3] X_16952989_SNP [dm6]	C	T	1.555e^-4	0.491	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15266951	X_15266951_SNP [dm3] X_15372918_SNP [dm6]	A	T	1.560e^-4	0.491	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3R	26974976	3R_26974976_SNP [dm3] 3R_31149254_SNP [dm6]	C	T	1.563e^-4	0.491	INTRON Gycbeta100B
X	5160216	X_5160216_SNP [dm3] X_5266183_SNP [dm6]	T	A	1.567e^-4	0.491	INTERGENIC
3R	12465284	3R_12465284_SNP [dm3] 3R_16639562_SNP [dm6]	G	A	1.570e^-4	0.491	UTR_3_PRIME Fas1 UPSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl
3L	22330303	3L_22330303_SNP [dm3] 3L_22337203_SNP [dm6]	G	A	1.572e^-4	0.491	INTRON Ten-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5462187	2L_5462187_SNP [dm3] 2L_5462187_SNP [dm6]	G	A	1.572e^-4	0.491	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	16165997	3R_16165997_SNP [dm3] 3R_20340275_SNP [dm6]	G	A	1.582e^-4	0.491	NON_SYNONYMOUS_CODING Ir92a
2R	13642879	2R_13642879_SNP [dm3] 2R_17755374_SNP [dm6]	A	G	1.597e^-4	0.491	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16036255	3L_16036255_SNP [dm3] 3L_16043155_SNP [dm6]	C	A	1.603e^-4	0.491	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Stat92E
2L	9054100	2L_9054100_SNP [dm3] 2L_9054100_SNP [dm6]	C	A	1.605e^-4	0.491	INTRON CG31708
2L	12953249	2L_12953249_SNP [dm3] 2L_12953249_SNP [dm6]	C	A	1.609e^-4	0.491	INTERGENIC
2R	17280284	2R_17280284_SNP [dm3] 2R_21392779_SNP [dm6]	G	A	1.617e^-4	0.491	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
3L	16036273	3L_16036273_SNP [dm3] 3L_16043173_SNP [dm6]	T	A	1.626e^-4	0.491	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Stat92E
3L	8067631	3L_8067631_SNP [dm3] 3L_8074531_SNP [dm6]	A	C	1.632e^-4	0.491	NON_SYNONYMOUS_CODING Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16275585	2R_16275585_SNP [dm3] 2R_20388080_SNP [dm6]	T	A	1.635e^-4	0.491	INTERGENIC
2R	19402483	2R_19402483_SNP [dm3] 2R_23514960_SNP [dm6]	G	A	1.636e^-4	0.491	INTERGENIC
2R	14282965	2R_14282965_INS [dm3] 2R_18395460_INS [dm6]	G	GG	1.638e^-4	0.491	DOWNSTREAM Idgf5 INTERGENIC
2L	15465267	2L_15465267_SNP [dm3] 2L_15465267_SNP [dm6]	T	C	1.640e^-4	0.491	INTERGENIC
2R	16400241	2R_16400241_SNP [dm3] 2R_20512736_SNP [dm6]	G	T	1.641e^-4	0.491	UTR_3_PRIME CG13426 DOWNSTREAM CR44649
2L	2845005	2L_2845005_SNP [dm3] 2L_2845005_SNP [dm6]	C	T	1.658e^-4	0.491	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117	TF binding site mE1_TFBS_cad
2R	6592563	2R_6592563_SNP [dm3] 2R_10705058_SNP [dm6]	A	G	1.666e^-4	0.491	UPSTREAM stan INTRON stan
3R	21228458	3R_21228458_SNP [dm3] 3R_25402736_SNP [dm6]	T	C	1.669e^-4	0.491	INTRON Fur1
3L	21678317	3L_21678317_SNP [dm3] 3L_21685217_SNP [dm6]	C	T	1.672e^-4	0.491	DOWNSTREAM CR43978 INTERGENIC
3L	7125745	3L_7125745_SNP [dm3] 3L_7132645_SNP [dm6]	A	T	1.674e^-4	0.491	SPLICE_SITE_REGION Dbi UTR_5_PRIME Dbi INTRON Dbi	TF binding site BDTNP1_TFBS_da
2L	2996381	2L_2996381_SNP [dm3] 2L_2996381_SNP [dm6]	T	C	1.675e^-4	0.491	SYNONYMOUS_CODING CG3558
2R	6163938	2R_6163938_SNP [dm3] 2R_10276433_SNP [dm6]	C	A	1.677e^-4	0.491	UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11853195	X_11853195_SNP [dm3] X_11959162_SNP [dm6]	T	A	1.681e^-4	0.491	INTRON cac
3L	1721676	3L_1721676_SNP [dm3] 3L_1721676_SNP [dm6]	T	C	1.694e^-4	0.491	SYNONYMOUS_CODING CG18171 INTRON drpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13823799	X_13823799_SNP [dm3] X_13929766_SNP [dm6]	A	T	1.699e^-4	0.491	INTRON mamo
2R	11387038	2R_11387038_SNP [dm3] 2R_15499533_SNP [dm6]	T	G	1.702e^-4	0.491	UPSTREAM Ir52a INTERGENIC
2L	927685	2L_927685_SNP [dm3] 2L_927685_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON CG4341
2L	9961658	2L_9961658_SNP [dm3] 2L_9961658_SNP [dm6]	G	C	1.706e^-4	0.491	INTRON CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10607655	2R_10607655_SNP [dm3] 2R_14720150_SNP [dm6]	T	G	1.706e^-4	0.491	INTERGENIC
3L	14141405	3L_14141405_SNP [dm3] 3L_14148305_SNP [dm6]	T	C	1.706e^-4	0.491	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	14142845	3L_14142845_SNP [dm3] 3L_14149745_SNP [dm6]	T	C	1.706e^-4	0.491	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	16754756	3L_16754756_SNP [dm3] 3L_16761656_SNP [dm6]	C	A	1.706e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	16754788	3L_16754788_SNP [dm3] 3L_16761688_SNP [dm6]	T	C	1.706e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2190483	3L_2190483_MNP [dm3] 3L_2190483_MNP [dm6]	GTCT	TGTG	1.706e^-4	0.491	INTRON CG5707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2190490	3L_2190490_SNP [dm3] 3L_2190490_SNP [dm6]	C	A	1.706e^-4	0.491	INTRON CG5707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2190527	3L_2190527_SNP [dm3] 3L_2190527_SNP [dm6]	C	A	1.706e^-4	0.491	INTRON CG5707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2191658	3L_2191658_SNP [dm3] 3L_2191658_SNP [dm6]	T	A	1.706e^-4	0.491	INTRON CG5707
3L	3664333	3L_3664333_SNP [dm3] 3L_3664333_SNP [dm6]	G	T	1.706e^-4	0.491	INTERGENIC
3L	7127896	3L_7127896_SNP [dm3] 3L_7134796_SNP [dm6]	T	C	1.706e^-4	0.491	UTR_5_PRIME melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	968719	3L_968719_SNP [dm3] 3L_968719_SNP [dm6]	G	A	1.706e^-4	0.491	INTRON Glut1
3R	13454582	3R_13454582_SNP [dm3] 3R_17628860_SNP [dm6]	C	G	1.706e^-4	0.491	NON_SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3R	18478649	3R_18478649_SNP [dm3] 3R_22652927_SNP [dm6]	T	C	1.706e^-4	0.491	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18478985	3R_18478985_SNP [dm3] 3R_22653263_SNP [dm6]	G	T	1.706e^-4	0.491	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3R	18479011	3R_18479011_SNP [dm3] 3R_22653289_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3R	18479012	3R_18479012_SNP [dm3] 3R_22653290_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3R	18479023	3R_18479023_SNP [dm3] 3R_22653301_SNP [dm6]	C	G	1.706e^-4	0.491	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3R	18480540	3R_18480540_SNP [dm3] 3R_22654818_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON CG45058
3R	18480791	3R_18480791_SNP [dm3] 3R_22655069_SNP [dm6]	C	A	1.706e^-4	0.491	INTRON CG45058
3R	18480808	3R_18480808_SNP [dm3] 3R_22655086_SNP [dm6]	A	T	1.706e^-4	0.491	INTRON CG45058
3R	18480810	3R_18480810_SNP [dm3] 3R_22655088_SNP [dm6]	A	T	1.706e^-4	0.491	INTRON CG45058
3R	18481049	3R_18481049_SNP [dm3] 3R_22655327_SNP [dm6]	T	C	1.706e^-4	0.491	INTRON CG45058
3R	22759186	3R_22759186_SNP [dm3] 3R_26933464_SNP [dm6]	A	G	1.706e^-4	0.491	INTRON sda
3R	25030866	3R_25030866_SNP [dm3] 3R_29205144_SNP [dm6]	C	T	1.706e^-4	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27710735	3R_27710735_SNP [dm3] 3R_31885013_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON heph	TF binding site mE1_TFBS_Trl
3R	27711791	3R_27711791_SNP [dm3] 3R_31886069_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON heph
3R	27731468	3R_27731468_SNP [dm3] 3R_31905746_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON heph
3R	27731773	3R_27731773_SNP [dm3] 3R_31906051_SNP [dm6]	T	C	1.706e^-4	0.491	INTRON heph
3R	27736863	3R_27736863_SNP [dm3] 3R_31911141_SNP [dm6]	T	C	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_twi
3R	27738354	3R_27738354_SNP [dm3] 3R_31912632_SNP [dm6]	T	A	1.706e^-4	0.491	INTRON heph
3R	27748397	3R_27748397_SNP [dm3] 3R_31922675_SNP [dm6]	T	C	1.706e^-4	0.491	INTRON heph
3R	27752119	3R_27752119_SNP [dm3] 3R_31926397_SNP [dm6]	C	G	1.706e^-4	0.491	INTRON heph
3R	27752120	3R_27752120_INS [dm3] 3R_31926398_INS [dm6]	A	AG	1.706e^-4	0.491	INTRON heph
3R	27752123	3R_27752123_SNP [dm3] 3R_31926401_SNP [dm6]	T	A	1.706e^-4	0.491	INTRON heph
3R	27752124	3R_27752124_DEL [dm3] 3R_31926402_DEL [dm6]	GT	G	1.706e^-4	0.491	INTRON heph
3R	27752126	3R_27752126_DEL [dm3] 3R_31926404_DEL [dm6]	GCACC	G	1.706e^-4	0.491	INTRON heph
3R	27753885	3R_27753885_SNP [dm3] 3R_31928163_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON heph
3R	27754106	3R_27754106_SNP [dm3] 3R_31928384_SNP [dm6]	A	T	1.706e^-4	0.491	INTRON heph	TF binding site mE1_TFBS_h
3R	27754957	3R_27754957_SNP [dm3] 3R_31929235_SNP [dm6]	T	G	1.706e^-4	0.491	INTRON heph
3R	27756335	3R_27756335_DEL [dm3] 3R_31930613_DEL [dm6]	GCTTTGTATCGCCAGAAGTG...	G	1.706e^-4	0.491	INTRON heph
3R	27763729	3R_27763729_SNP [dm3] 3R_31938007_SNP [dm6]	C	T	1.706e^-4	0.491	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	27767509	3R_27767509_SNP [dm3] 3R_31941787_SNP [dm6]	T	G	1.706e^-4	0.491	INTRON heph
3R	27770717	3R_27770717_SNP [dm3] 3R_31944995_SNP [dm6]	T	C	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27780324	3R_27780324_DEL [dm3] 3R_31954602_DEL [dm6]	ATA	A	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	27783917	3R_27783917_SNP [dm3] 3R_31958195_SNP [dm6]	T	G	1.706e^-4	0.491	INTRON heph
3R	27786113	3R_27786113_SNP [dm3] 3R_31960391_SNP [dm6]	A	C	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	27787436	3R_27787436_SNP [dm3] 3R_31961714_SNP [dm6]	A	G	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb
3R	27789776	3R_27789776_DEL [dm3] 3R_31964054_DEL [dm6]	ACA	A	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_twi
3R	27790069	3R_27790069_SNP [dm3] 3R_31964347_SNP [dm6]	C	A	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27790815	3R_27790815_SNP [dm3] 3R_31965093_SNP [dm6]	G	C	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	27799542	3R_27799542_SNP [dm3] 3R_31973820_SNP [dm6]	G	A	1.706e^-4	0.491	INTRON heph
3R	27803437	3R_27803437_DEL [dm3] 3R_31977715_DEL [dm6]	CTTGTAA	C	1.706e^-4	0.491	UPSTREAM CG2003 INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27803445	3R_27803445_INS [dm3] 3R_31977723_INS [dm6]	T	TTTACAAGCTCAA...	1.706e^-4	0.491	UPSTREAM CG2003 INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27804989	3R_27804989_SNP [dm3] 3R_31979267_SNP [dm6]	T	A	1.706e^-4	0.491	INTRON heph & 1 other
3R	27805278	3R_27805278_SNP [dm3] 3R_31979556_SNP [dm6]	C	G	1.706e^-4	0.491	UTR_5_PRIME heph INTRON heph & 1 other
3R	27815918	3R_27815918_SNP [dm3] 3R_31990196_SNP [dm6]	C	A	1.706e^-4	0.491	SYNONYMOUS_CODING CG2003 UTR_3_PRIME CG2003 INTRON heph	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27819550	3R_27819550_SNP [dm3] 3R_31993828_SNP [dm6]	C	T	1.706e^-4	0.491	UPSTREAM heph INTRON heph
3R	27819746	3R_27819746_SNP [dm3] 3R_31994024_SNP [dm6]	C	A	1.706e^-4	0.491	UPSTREAM heph INTRON heph
3R	27821345	3R_27821345_SNP [dm3] 3R_31995623_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON heph	TF binding site BDTNP1_TFBS_twi
3R	27822414	3R_27822414_SNP [dm3] 3R_31996692_SNP [dm6]	C	G	1.706e^-4	0.491	INTRON heph
3R	27822457	3R_27822457_SNP [dm3] 3R_31996735_SNP [dm6]	G	A	1.706e^-4	0.491	INTRON heph
3R	27822534	3R_27822534_DEL [dm3] 3R_31996812_DEL [dm6]	GGC	T	1.706e^-4	0.491	INTRON heph
3R	27831276	3R_27831276_SNP [dm3] 3R_32005554_SNP [dm6]	C	A	1.706e^-4	0.491	INTRON heph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27833371	3R_27833371_SNP [dm3] 3R_32007649_SNP [dm6]	G	C	1.706e^-4	0.491	INTRON heph
3R	27833858	3R_27833858_SNP [dm3] 3R_32008136_SNP [dm6]	T	A	1.706e^-4	0.491	INTRON heph	transposable element FlyBase
3R	27834369	3R_27834369_SNP [dm3] 3R_32008647_SNP [dm6]	G	C	1.706e^-4	0.491	INTRON heph
3R	27835952	3R_27835952_SNP [dm3] 3R_32010230_SNP [dm6]	C	T	1.706e^-4	0.491	INTRON heph	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	27837781	3R_27837781_SNP [dm3] 3R_32012059_SNP [dm6]	A	G	1.706e^-4	0.491	UPSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27838065	3R_27838065_SNP [dm3] 3R_32012343_SNP [dm6]	A	G	1.706e^-4	0.491	UPSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27838223	3R_27838223_SNP [dm3] 3R_32012501_SNP [dm6]	C	T	1.706e^-4	0.491	UPSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27838469	3R_27838469_SNP [dm3] 3R_32012747_SNP [dm6]	G	T	1.706e^-4	0.491	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27839340	3R_27839340_SNP [dm3] 3R_32013618_SNP [dm6]	T	C	1.706e^-4	0.491	DOWNSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	27839399	3R_27839399_SNP [dm3] 3R_32013677_SNP [dm6]	C	A	1.706e^-4	0.491	DOWNSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	27845994	3R_27845994_SNP [dm3] 3R_32020272_SNP [dm6]	G	A	1.706e^-4	0.491	EXON CR45557
3R	27851038	3R_27851038_SNP [dm3] 3R_32025316_SNP [dm6]	A	G	1.706e^-4	0.491	EXON CR45557
3R	27853220	3R_27853220_DEL [dm3] 3R_32027498_DEL [dm6]	CATTGGAATAC...	C	1.706e^-4	0.491	DOWNSTREAM CR45557 INTERGENIC
3R	27854582	3R_27854582_SNP [dm3] 3R_32028860_SNP [dm6]	G	A	1.706e^-4	0.491	INTERGENIC
3R	27854661	3R_27854661_SNP [dm3] 3R_32028939_SNP [dm6]	G	A	1.706e^-4	0.491	INTERGENIC
3R	27856469	3R_27856469_SNP [dm3] 3R_32030747_SNP [dm6]	A	T	1.706e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27858418	3R_27858418_SNP [dm3] 3R_32032696_SNP [dm6]	G	C	1.706e^-4	0.491	INTERGENIC
3R	27859229	3R_27859229_SNP [dm3] 3R_32033507_SNP [dm6]	A	C	1.706e^-4	0.491	INTERGENIC
3R	27859627	3R_27859627_SNP [dm3] 3R_32033905_SNP [dm6]	A	G	1.706e^-4	0.491	INTERGENIC
3R	27861083	3R_27861083_SNP [dm3] 3R_32035361_SNP [dm6]	G	A	1.706e^-4	0.491	INTERGENIC
3R	27866429	3R_27866429_SNP [dm3] 3R_32040707_SNP [dm6]	C	A	1.706e^-4	0.491	DOWNSTREAM CG2053 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27881542	3R_27881542_SNP [dm3] 3R_32055820_SNP [dm6]	G	C	1.706e^-4	0.491	UTR_3_PRIME Map205 DOWNSTREAM mod & 1 other
3R	27893095	3R_27893095_SNP [dm3] 3R_32067373_SNP [dm6]	C	T	1.706e^-4	0.491	SYNONYMOUS_CODING Map205	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
X	14079721	X_14079721_SNP [dm3] X_14185688_SNP [dm6]	C	T	1.706e^-4	0.491	SYNONYMOUS_CODING CG32603
X	14079745	X_14079745_SNP [dm3] X_14185712_SNP [dm6]	C	T	1.706e^-4	0.491	SYNONYMOUS_CODING CG32603
X	15673307	X_15673307_INS [dm3] X_15779274_INS [dm6]	G	AATCA	1.706e^-4	0.491	DOWNSTREAM CG43672 INTRON CG43673
X	15673335	X_15673335_SNP [dm3] X_15779302_SNP [dm6]	C	A	1.706e^-4	0.491	DOWNSTREAM CG43672 INTRON CG43673
X	15673344	X_15673344_SNP [dm3] X_15779311_SNP [dm6]	T	C	1.706e^-4	0.491	DOWNSTREAM CG43672 INTRON CG43673
X	15673347	X_15673347_DEL [dm3] X_15779314_DEL [dm6]	GCAATTAG	G	1.706e^-4	0.491	DOWNSTREAM CG43672 INTRON CG43673
3R	14446277	3R_14446277_SNP [dm3] 3R_18620555_SNP [dm6]	T	C	1.707e^-4	0.491	UPSTREAM CG14304 INTRON qin & 1 other
2R	4939936	2R_4939936_SNP [dm3] 2R_9052431_SNP [dm6]	G	A	1.708e^-4	0.491	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21548810	3L_21548810_SNP [dm3] 3L_21555710_SNP [dm6]	A	T	1.712e^-4	0.492	UPSTREAM Wnk INTRON CG7173
2L	8176542	2L_8176542_SNP [dm3] 2L_8176542_SNP [dm6]	C	T	1.726e^-4	0.495	INTRON Piezo
3L	14036339	3L_14036339_SNP [dm3] 3L_14043239_SNP [dm6]	T	C	1.729e^-4	0.495	UTR_3_PRIME Hsc70Cb DOWNSTREAM blue	TF binding site mE1_TFBS_cad
3R	20004830	3R_20004830_SNP [dm3] 3R_24179108_SNP [dm6]	G	A	1.736e^-4	0.496	INTRON CG13606
3R	23195577	3R_23195577_SNP [dm3] 3R_27369855_SNP [dm6]	C	T	1.740e^-4	0.496	INTRON CG42534 EXON CR43476
3R	23195625	3R_23195625_SNP [dm3] 3R_27369903_SNP [dm6]	A	T	1.740e^-4	0.496	UPSTREAM CR43476 INTRON CG42534
3L	19322356	3L_19322356_SNP [dm3] 3L_19329256_SNP [dm6]	G	T	1.750e^-4	0.496	INTRON pip
2R	4920425	2R_4920425_SNP [dm3] 2R_9032920_SNP [dm6]	A	G	1.751e^-4	0.496	INTERGENIC
2L	13750050	2L_13750050_SNP [dm3] 2L_13750050_SNP [dm6]	G	A	1.755e^-4	0.496	INTRON CR44846 & 1 other
2L	10790181	2L_10790181_SNP [dm3] 2L_10790181_SNP [dm6]	G	A	1.756e^-4	0.496	UPSTREAM CG31870 INTRON CG31869
3R	22449549	3R_22449549_SNP [dm3] 3R_26623827_SNP [dm6]	G	T	1.756e^-4	0.496	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
X	2981394	X_2981394_DEL [dm3] X_3087361_DEL [dm6]	TATAAAGA	T	1.759e^-4	0.497	INTRON kirre	TF binding site BDTNP1_TFBS_twi
2R	6818842	2R_6818842_DEL [dm3] 2R_10931337_DEL [dm6]	CAC	C	1.765e^-4	0.497	INTERGENIC
2R	12826821	2R_12826821_SNP [dm3] 2R_16939316_SNP [dm6]	C	A	1.772e^-4	0.498	UPSTREAM Pkc53E DOWNSTREAM CG43789 INTRON Pkc53E
3L	19254596	3L_19254596_SNP [dm3] 3L_19261496_SNP [dm6]	G	A	1.775e^-4	0.498	UTR_5_PRIME Bet1 UPSTREAM nes DOWNSTREAM CR45210 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14993643	2R_14993643_SNP [dm3] 2R_19106138_SNP [dm6]	G	T	1.786e^-4	0.501	INTRON 5-HT1A
3L	5330002	3L_5330002_SNP [dm3] 3L_5336902_SNP [dm6]	A	G	1.790e^-4	0.501	INTERGENIC
3R	26974822	3R_26974822_SNP [dm3] 3R_31149100_SNP [dm6]	A	T	1.799e^-4	0.501	INTRON Gycbeta100B
3L	14954972	3L_14954972_SNP [dm3] 3L_14961872_SNP [dm6]	A	G	1.800e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14955026	3L_14955026_SNP [dm3] 3L_14961926_SNP [dm6]	A	G	1.800e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14955029	3L_14955029_SNP [dm3] 3L_14961929_SNP [dm6]	C	T	1.800e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13936184	X_13936184_SNP [dm3] X_14042151_SNP [dm6]	G	T	1.805e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10489032	2L_10489032_SNP [dm3] 2L_10489032_SNP [dm6]	T	C	1.807e^-4	0.501	UPSTREAM CG7456 DOWNSTREAM CG13144 INTRON CG6144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16868964	X_16868964_SNP [dm3] X_16974931_SNP [dm6]	G	A	1.813e^-4	0.502	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16263065	X_16263065_SNP [dm3] X_16369032_SNP [dm6]	A	G	1.816e^-4	0.503	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
2L	15543376	2L_15543376_SNP [dm3] 2L_15543376_SNP [dm6]	G	C	1.825e^-4	0.503	INTERGENIC
2R	4968576	2R_4968576_SNP [dm3] 2R_9081071_SNP [dm6]	C	T	1.833e^-4	0.503	SYNONYMOUS_CODING CG8083
3L	7128884	3L_7128884_SNP [dm3] 3L_7135784_SNP [dm6]	C	T	1.836e^-4	0.503	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13902618	3R_13902618_SNP [dm3] 3R_18076896_SNP [dm6]	A	G	1.837e^-4	0.503	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	19053082	3L_19053082_SNP [dm3] 3L_19059982_SNP [dm6]	C	A	1.842e^-4	0.503	UTR_3_PRIME CG3797
3R	15367170	3R_15367170_SNP [dm3] 3R_19541448_SNP [dm6]	T	G	1.843e^-4	0.503	INTRON Dys
3R	22352123	3R_22352123_SNP [dm3] 3R_26526401_SNP [dm6]	C	A	1.851e^-4	0.503	INTRON plum	TF binding site mE1_TFBS_cnc
3R	27695362	3R_27695362_INS [dm3] 3R_31869640_INS [dm6]	A	ATAACTCAAAGGATCGGGAG...	1.853e^-4	0.503	INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18111885	X_18111885_SNP [dm3] X_18217852_SNP [dm6]	T	G	1.871e^-4	0.503	INTRON CG33639
3L	3420190	3L_3420190_SNP [dm3] 3L_3420190_SNP [dm6]	G	A	1.875e^-4	0.503	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7673219	X_7673219_SNP [dm3] X_7779186_SNP [dm6]	T	C	1.885e^-4	0.503	SYNONYMOUS_CODING CG32718
2R	20443681	2R_20443681_SNP [dm3] 2R_24556158_SNP [dm6]	C	T	1.887e^-4	0.503	UTR_5_PRIME CG4622 UTR_3_PRIME ITP INTRON ITP
3R	25290840	3R_25290840_SNP [dm3] 3R_29465118_SNP [dm6]	C	G	1.888e^-4	0.503	INTRON Ptp99A
X	15883646	X_15883646_SNP [dm3] X_15989613_SNP [dm6]	G	T	1.891e^-4	0.503	INTRON eIF5
2R	6601994	2R_6601994_SNP [dm3] 2R_10714489_SNP [dm6]	C	T	1.900e^-4	0.503	SYNONYMOUS_CODING stan
X	16218915	X_16218915_SNP [dm3] X_16324882_SNP [dm6]	A	G	1.900e^-4	0.503	SYNONYMOUS_CODING CG32579 UPSTREAM CalpC INTRON CG32579
3R	13638138	3R_13638138_SNP [dm3] 3R_17812416_SNP [dm6]	C	G	1.902e^-4	0.503	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22293393	3R_22293393_SNP [dm3] 3R_26467671_SNP [dm6]	A	G	1.910e^-4	0.503	SYNONYMOUS_CODING CG5455
3R	25845983	3R_25845983_SNP [dm3] 3R_30020261_SNP [dm6]	G	A	1.913e^-4	0.503	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
3R	25839698	3R_25839698_SNP [dm3] 3R_30013976_SNP [dm6]	G	A	1.933e^-4	0.503	INTRON CG7920
X	12403233	X_12403233_SNP [dm3] X_12509200_SNP [dm6]	C	T	1.938e^-4	0.503	INTRON CG2556
3R	27800876	3R_27800876_DEL [dm3] 3R_31975154_DEL [dm6]	TCTT	T	1.940e^-4	0.503	INTRON heph
3L	16526054	3L_16526054_SNP [dm3] 3L_16532954_SNP [dm6]	G	A	1.945e^-4	0.503	INTRON CG43373
3R	13113646	3R_13113646_SNP [dm3] 3R_17287924_SNP [dm6]	T	C	1.945e^-4	0.503	UPSTREAM CR43489 EXON CR43490
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	1.951e^-4	0.503	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	1.951e^-4	0.503	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4048353	2L_4048353_SNP [dm3] 2L_4048353_SNP [dm6]	G	T	1.963e^-4	0.503	INTRON ed	TF binding site mE1_TFBS_chinmo
3L	15099727	3L_15099727_SNP [dm3] 3L_15106627_SNP [dm6]	T	C	1.969e^-4	0.503	INTRON CTPsyn & 1 other
2L	1245096	2L_1245096_SNP [dm3] 2L_1245096_SNP [dm6]	C	T	1.975e^-4	0.503	INTERGENIC
2L	3691568	2L_3691568_SNP [dm3] 2L_3691568_SNP [dm6]	C	T	1.975e^-4	0.503	UTR_3_PRIME CG34340 DOWNSTREAM CG16704
3L	24287914	3L_24287914_SNP [dm3] 3L_24294814_SNP [dm6]	A	T	1.975e^-4	0.503	INTRON Snap25
3R	13638058	3R_13638058_SNP [dm3] 3R_17812336_SNP [dm6]	A	G	1.975e^-4	0.503	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	24937850	3R_24937850_SNP [dm3] 3R_29112128_SNP [dm6]	C	G	1.975e^-4	0.503	SYNONYMOUS_CODING alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24937862	3R_24937862_SNP [dm3] 3R_29112140_SNP [dm6]	G	A	1.975e^-4	0.503	SYNONYMOUS_CODING alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19038139	X_19038139_SNP [dm3] X_19144106_SNP [dm6]	G	C	1.975e^-4	0.503	NON_SYNONYMOUS_CODING RhoGAP18B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	21232740	3L_21232740_SNP [dm3] 3L_21239640_SNP [dm6]	A	T	1.977e^-4	0.503	UPSTREAM Eip78C INTRON Eip78C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22208024	3L_22208024_SNP [dm3] 3L_22214924_SNP [dm6]	G	A	1.977e^-4	0.503	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18697876	3L_18697876_SNP [dm3] 3L_18704776_SNP [dm6]	G	A	1.977e^-4	0.503	INTERGENIC
2R	12168410	2R_12168410_DEL [dm3] 2R_16280905_DEL [dm6]	TA	T	1.979e^-4	0.503	UPSTREAM CG15705 DOWNSTREAM CG15704 & 1 other INTERGENIC
3R	25830812	3R_25830812_SNP [dm3] 3R_30005090_SNP [dm6]	G	C	1.980e^-4	0.503	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	12058542	3R_12058542_SNP [dm3] 3R_16232820_SNP [dm6]	G	C	1.980e^-4	0.503	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22679048	3R_22679048_SNP [dm3] 3R_26853326_SNP [dm6]	T	A	1.983e^-4	0.503	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19042515	3L_19042515_SNP [dm3] 3L_19049415_SNP [dm6]	C	A	1.984e^-4	0.503	INTERGENIC
3L	19042556	3L_19042556_SNP [dm3] 3L_19049456_SNP [dm6]	G	C	1.984e^-4	0.503	INTERGENIC
3L	19045133	3L_19045133_SNP [dm3] 3L_19052033_SNP [dm6]	C	A	1.984e^-4	0.503	UPSTREAM CR44675 & 1 other DOWNSTREAM CG43407 INTERGENIC
3L	19048380	3L_19048380_SNP [dm3] 3L_19055280_SNP [dm6]	A	T	1.984e^-4	0.503	INTERGENIC	regulatory region REDfly_CRMs
3L	19049663	3L_19049663_SNP [dm3] 3L_19056563_SNP [dm6]	G	C	1.984e^-4	0.503	INTERGENIC
3L	19049676	3L_19049676_SNP [dm3] 3L_19056576_SNP [dm6]	G	A	1.984e^-4	0.503	INTERGENIC
3L	19050900	3L_19050900_SNP [dm3] 3L_19057800_SNP [dm6]	C	A	1.984e^-4	0.503	INTERGENIC
3L	19050904	3L_19050904_SNP [dm3] 3L_19057804_SNP [dm6]	A	C	1.984e^-4	0.503	INTERGENIC
3L	19050921	3L_19050921_INS [dm3] 3L_19057821_INS [dm6]	A	ATCACTTGATTA...	1.984e^-4	0.503	INTERGENIC
3L	19050925	3L_19050925_SNP [dm3] 3L_19057825_SNP [dm6]	T	G	1.984e^-4	0.503	INTERGENIC
3L	19050928	3L_19050928_MNP [dm3] 3L_19057828_MNP [dm6]	ATC	CAT	1.984e^-4	0.503	INTERGENIC
3L	19050934	3L_19050934_INS [dm3] 3L_19057834_INS [dm6]	T	TGTGTACGTAGACTGTCCA...	1.984e^-4	0.503	INTERGENIC
3L	19050960	3L_19050960_SNP [dm3] 3L_19057860_SNP [dm6]	A	T	1.984e^-4	0.503	INTERGENIC
3L	19050976	3L_19050976_SNP [dm3] 3L_19057876_SNP [dm6]	T	A	1.984e^-4	0.503	INTERGENIC
3L	19050984	3L_19050984_SNP [dm3] 3L_19057884_SNP [dm6]	G	T	1.984e^-4	0.503	INTERGENIC
3L	19057134	3L_19057134_INS [dm3] 3L_19064034_INS [dm6]	A	ATTT	1.984e^-4	0.503	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	19063026	3L_19063026_SNP [dm3] 3L_19069926_SNP [dm6]	T	C	1.984e^-4	0.503	INTRON Mkp3
3L	12090011	3L_12090011_INS [dm3] 3L_12096911_INS [dm6]	A	AGTAAGCATACTAA...	1.984e^-4	0.503	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15048979	X_15048979_SNP [dm3] X_15154946_SNP [dm6]	T	C	1.987e^-4	0.503	INTRON CG9095
2L	12986111	2L_12986111_SNP [dm3] 2L_12986111_SNP [dm6]	T	G	1.987e^-4	0.503	INTERGENIC
3L	21465942	3L_21465942_SNP [dm3] 3L_21472842_SNP [dm6]	C	T	1.991e^-4	0.503	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19135682	3R_19135682_SNP [dm3] 3R_23309960_SNP [dm6]	G	A	2.000e^-4	0.505	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25191153	3R_25191153_SNP [dm3] 3R_29365431_SNP [dm6]	C	A	2.008e^-4	0.506	INTERGENIC
2L	5757642	2L_5757642_SNP [dm3] 2L_5757642_SNP [dm6]	T	C	2.017e^-4	0.507	INTRON CG11030	TF binding site BDTNP1_TFBS_dl
2R	11342386	2R_11342386_SNP [dm3] 2R_15454881_SNP [dm6]	G	T	2.019e^-4	0.507	INTRON CG43729
3R	20797148	3R_20797148_SNP [dm3] 3R_24971426_SNP [dm6]	C	G	2.023e^-4	0.508	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18179023	X_18179023_SNP [dm3] X_18284990_SNP [dm6]	C	A	2.026e^-4	0.508	DOWNSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21503399	3L_21503399_SNP [dm3] 3L_21510299_SNP [dm6]	G	A	2.032e^-4	0.509	INTRON M6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26464267	3R_26464267_SNP [dm3] 3R_30638545_SNP [dm6]	C	G	2.059e^-4	0.514	INTERGENIC
3R	27845518	3R_27845518_SNP [dm3] 3R_32019796_SNP [dm6]	G	A	2.063e^-4	0.514	EXON CR45557
3L	4928400	3L_4928400_SNP [dm3] 3L_4928400_SNP [dm6]	C	T	2.065e^-4	0.514	DOWNSTREAM CR43627 INTERGENIC
3R	25296491	3R_25296491_SNP [dm3] 3R_29470769_SNP [dm6]	G	A	2.072e^-4	0.514	INTRON Ptp99A
3L	12621334	3L_12621334_SNP [dm3] 3L_12628234_SNP [dm6]	T	A	2.073e^-4	0.514	EXON CR32111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18367765	2R_18367765_SNP [dm3] 2R_22480260_SNP [dm6]	C	G	2.076e^-4	0.514	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21549413	3L_21549413_SNP [dm3] 3L_21556313_SNP [dm6]	G	A	2.078e^-4	0.514	NON_SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
2R	18679706	2R_18679706_SNP [dm3] 2R_22792201_SNP [dm6]	A	T	2.080e^-4	0.514	INTRON CG42260
2R	18679707	2R_18679707_SNP [dm3] 2R_22792202_SNP [dm6]	A	T	2.080e^-4	0.514	INTRON CG42260
3R	19534501	3R_19534501_SNP [dm3] 3R_23708779_SNP [dm6]	A	G	2.095e^-4	0.516	DOWNSTREAM CG31414 INTERGENIC
3R	19534508	3R_19534508_SNP [dm3] 3R_23708786_SNP [dm6]	A	T	2.095e^-4	0.516	DOWNSTREAM CG31414 INTERGENIC
3R	19534511	3R_19534511_SNP [dm3] 3R_23708789_SNP [dm6]	T	C	2.095e^-4	0.516	DOWNSTREAM CG31414 INTERGENIC
3R	25827552	3R_25827552_SNP [dm3] 3R_30001830_SNP [dm6]	C	T	2.103e^-4	0.517	SYNONYMOUS_CODING Tace INTRON Tace	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16186350	3R_16186350_SNP [dm3] 3R_20360628_SNP [dm6]	C	G	2.107e^-4	0.517	UTR_3_PRIME MtnC DOWNSTREAM CR45023
2L	3434946	2L_3434946_SNP [dm3] 2L_3434946_SNP [dm6]	C	T	2.111e^-4	0.517	INTERGENIC
3R	15662386	3R_15662386_SNP [dm3] 3R_19836664_SNP [dm6]	T	A	2.111e^-4	0.517	UTR_5_PRIME bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4514300	3L_4514300_SNP [dm3] 3L_4514300_SNP [dm6]	G	C	2.122e^-4	0.517	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
3R	11196282	3R_11196282_SNP [dm3] 3R_15370560_SNP [dm6]	A	T	2.122e^-4	0.517	UTR_3_PRIME CG6136 UPSTREAM CG14868 DOWNSTREAM CG6136
2R	7147751	2R_7147751_SNP [dm3] 2R_11260246_SNP [dm6]	G	C	2.123e^-4	0.517	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
3L	2243672	3L_2243672_SNP [dm3] 3L_2243672_SNP [dm6]	G	A	2.125e^-4	0.517	UTR_3_PRIME ACXD UPSTREAM CG32301
3L	19057128	3L_19057128_INS [dm3] 3L_19064028_INS [dm6]	G	TTCATTCATTCA...	2.137e^-4	0.518	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	7601554	2R_7601554_SNP [dm3] 2R_11714049_SNP [dm6]	C	T	2.145e^-4	0.518	INTRON pyr
3L	12089803	3L_12089803_SNP [dm3] 3L_12096703_SNP [dm6]	T	A	2.145e^-4	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12091216	3L_12091216_SNP [dm3] 3L_12098116_SNP [dm6]	C	T	2.145e^-4	0.518	INTERGENIC
3L	14951226	3L_14951226_SNP [dm3] 3L_14958126_SNP [dm6]	G	A	2.145e^-4	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14951276	3L_14951276_SNP [dm3] 3L_14958176_SNP [dm6]	T	A	2.145e^-4	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14951280	3L_14951280_SNP [dm3] 3L_14958180_SNP [dm6]	C	T	2.145e^-4	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	19534378	3R_19534378_SNP [dm3] 3R_23708656_SNP [dm6]	C	T	2.148e^-4	0.518	DOWNSTREAM CG31414 INTERGENIC
2L	16383955	2L_16383955_SNP [dm3] 2L_16383955_SNP [dm6]	A	C	2.152e^-4	0.518	INTERGENIC
2R	9512793	2R_9512793_DEL [dm3] 2R_13625288_DEL [dm6]	AA	A	2.153e^-4	0.518	INTRON fas
3R	27842373	3R_27842373_SNP [dm3] 3R_32016651_SNP [dm6]	G	A	2.158e^-4	0.518	EXON CR45557
3R	11012621	3R_11012621_SNP [dm3] 3R_15186899_SNP [dm6]	T	G	2.160e^-4	0.518	INTRON Gyc88E
2L	8067317	2L_8067317_SNP [dm3] 2L_8067317_SNP [dm6]	A	G	2.167e^-4	0.518	SYNONYMOUS_CODING poe
3R	27817665	3R_27817665_SNP [dm3] 3R_31991943_SNP [dm6]	A	T	2.169e^-4	0.518	INTRON heph
3L	1860894	3L_1860894_SNP [dm3] 3L_1860894_SNP [dm6]	C	T	2.171e^-4	0.518	SYNONYMOUS_CODING R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19065415	3L_19065415_DEL [dm3] 3L_19072315_DEL [dm6]	GC	G	2.183e^-4	0.519	INTRON Mkp3
3L	19065722	3L_19065722_DEL [dm3] 3L_19072622_DEL [dm6]	GG	G	2.183e^-4	0.519	UPSTREAM Mkp3 INTRON Mkp3
X	13823859	X_13823859_SNP [dm3] X_13929826_SNP [dm6]	A	G	2.188e^-4	0.519	INTRON mamo
3L	7268844	3L_7268844_SNP [dm3] 3L_7275744_SNP [dm6]	A	G	2.192e^-4	0.519	INTRON unc-13-4A
3L	19159220	3L_19159220_SNP [dm3] 3L_19166120_SNP [dm6]	A	G	2.199e^-4	0.519	INTRON fz2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	15745592	3L_15745592_SNP [dm3] 3L_15752492_SNP [dm6]	G	T	2.201e^-4	0.519	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10850674	3R_10850674_SNP [dm3] 3R_15024952_SNP [dm6]	C	G	2.209e^-4	0.519	INTERGENIC
3L	9229814	3L_9229814_DEL [dm3] 3L_9236714_DEL [dm6]	CC	C	2.210e^-4	0.519	UPSTREAM CG4483 INTERGENIC
3R	27789928	3R_27789928_DEL [dm3] 3R_31964206_DEL [dm6]	AA	A	2.214e^-4	0.519	INTRON heph	TF binding site BDTNP1_TFBS_twi
X	3348755	X_3348755_SNP [dm3] X_3454722_SNP [dm6]	A	C	2.214e^-4	0.519	INTRON CR44999
3L	4154299	3L_4154299_SNP [dm3] 3L_4154299_SNP [dm6]	T	C	2.215e^-4	0.519	INTRON nab
3L	19218559	3L_19218559_SNP [dm3] 3L_19225459_SNP [dm6]	C	T	2.217e^-4	0.519	INTRON fz2
3R	21650398	3R_21650398_SNP [dm3] 3R_25824676_SNP [dm6]	A	G	2.223e^-4	0.519	EXON CR44949
3R	26605440	3R_26605440_SNP [dm3] 3R_30779718_SNP [dm6]	G	T	2.231e^-4	0.519	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3R	7130733	3R_7130733_DEL [dm3] 3R_11305011_DEL [dm6]	CGCACACAC	C	2.232e^-4	0.519	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
X	2784582	X_2784582_SNP [dm3] X_2890549_SNP [dm6]	C	A	2.237e^-4	0.519	UPSTREAM CG3526 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6792253	2L_6792253_SNP [dm3] 2L_6792253_SNP [dm6]	A	G	2.237e^-4	0.519	INTRON nrv2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6792268	2L_6792268_SNP [dm3] 2L_6792268_SNP [dm6]	G	T	2.237e^-4	0.519	INTRON nrv2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6792283	2L_6792283_SNP [dm3] 2L_6792283_SNP [dm6]	G	A	2.237e^-4	0.519	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6792306	2L_6792306_SNP [dm3] 2L_6792306_SNP [dm6]	A	C	2.237e^-4	0.519	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6792635	2L_6792635_SNP [dm3] 2L_6792635_SNP [dm6]	A	T	2.237e^-4	0.519	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6792661	2L_6792661_SNP [dm3] 2L_6792661_SNP [dm6]	G	A	2.237e^-4	0.519	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	968711	3L_968711_SNP [dm3] 3L_968711_SNP [dm6]	A	T	2.239e^-4	0.519	INTRON Glut1
2L	4000179	2L_4000179_SNP [dm3] 2L_4000179_SNP [dm6]	C	A	2.240e^-4	0.519	SYNONYMOUS_CODING CG43797 UPSTREAM CR45344
3R	22500820	3R_22500820_SNP [dm3] 3R_26675098_SNP [dm6]	G	T	2.246e^-4	0.519	INTRON beat-VII
3L	19099531	3L_19099531_SNP [dm3] 3L_19106431_SNP [dm6]	T	A	2.264e^-4	0.52	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	21595542	3L_21595542_SNP [dm3] 3L_21602442_SNP [dm6]	C	A	2.264e^-4	0.52	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12462067	3L_12462067_SNP [dm3] 3L_12468967_SNP [dm6]	T	C	2.269e^-4	0.52	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	19046652	3L_19046652_SNP [dm3] 3L_19053552_SNP [dm6]	A	G	2.271e^-4	0.52	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3L	19046710	3L_19046710_SNP [dm3] 3L_19053610_SNP [dm6]	A	T	2.271e^-4	0.52	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3R	22433542	3R_22433542_SNP [dm3] 3R_26607820_SNP [dm6]	A	T	2.273e^-4	0.52	EXON CR44951
3R	27664942	3R_27664942_SNP [dm3] 3R_31839220_SNP [dm6]	A	G	2.277e^-4	0.52	INTRON RhoGAP100F
3R	27822416	3R_27822416_INS [dm3] 3R_31996694_INS [dm6]	C	CTATGA	2.277e^-4	0.52	INTRON heph
3R	27881901	3R_27881901_SNP [dm3] 3R_32056179_SNP [dm6]	G	T	2.279e^-4	0.52	UTR_3_PRIME Map205 DOWNSTREAM Map205
3R	27889380	3R_27889380_SNP [dm3] 3R_32063658_SNP [dm6]	T	A	2.279e^-4	0.52	INTRON Map205
X	15883606	X_15883606_DEL [dm3] X_15989573_DEL [dm6]	CGA	C	2.285e^-4	0.52	INTRON eIF5
X	15883610	X_15883610_MNP [dm3] X_15989577_MNP [dm6]	GTGCTG	CCCACA	2.285e^-4	0.52	INTRON eIF5
X	15883628	X_15883628_INS [dm3] X_15989595_INS [dm6]	A	GTAAAATCAGCC...	2.285e^-4	0.52	INTRON eIF5
X	7674112	X_7674112_INS [dm3] X_7780079_INS [dm6]	T	TT	2.295e^-4	0.521	DOWNSTREAM CG32718 INTERGENIC
3L	19789812	3L_19789812_SNP [dm3] 3L_19796712_SNP [dm6]	G	A	2.295e^-4	0.521	SYNONYMOUS_CODING HLH106	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19534395	3R_19534395_SNP [dm3] 3R_23708673_SNP [dm6]	T	G	2.297e^-4	0.521	DOWNSTREAM CG31414 INTERGENIC
2L	17993662	2L_17993662_SNP [dm3] 2L_17993662_SNP [dm6]	A	G	2.307e^-4	0.521	EXON CR44767
2R	16190531	2R_16190531_SNP [dm3] 2R_20303026_SNP [dm6]	A	T	2.309e^-4	0.521	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
3R	6824116	3R_6824116_SNP [dm3] 3R_10998394_SNP [dm6]	C	A	2.311e^-4	0.521	INTRON CG34114
2L	5580139	2L_5580139_SNP [dm3] 2L_5580139_SNP [dm6]	C	T	2.313e^-4	0.521	SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1963745	2L_1963745_SNP [dm3] 2L_1963745_SNP [dm6]	T	C	2.317e^-4	0.521	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10007421	2R_10007421_SNP [dm3] 2R_14119916_SNP [dm6]	G	C	2.322e^-4	0.521	INTRON Prosap	TF binding site mE1_TFBS_HSA
2R	10007422	2R_10007422_DEL [dm3] 2R_14119917_DEL [dm6]	TGC	T	2.322e^-4	0.521	INTRON Prosap	TF binding site mE1_TFBS_HSA
3R	11977440	3R_11977440_SNP [dm3] 3R_16151718_SNP [dm6]	A	C	2.323e^-4	0.521	UPSTREAM Fer2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18656982	2L_18656982_SNP [dm3] 2L_18656982_SNP [dm6]	A	C	2.325e^-4	0.521	INTRON MESR3
3R	13599365	3R_13599365_SNP [dm3] 3R_17773643_SNP [dm6]	A	G	2.330e^-4	0.521	SYNONYMOUS_CODING CG43102
3R	27649838	3R_27649838_SNP [dm3] 3R_31824116_SNP [dm6]	T	C	2.335e^-4	0.521	INTRON RhoGAP100F
3R	27650029	3R_27650029_SNP [dm3] 3R_31824307_SNP [dm6]	T	C	2.335e^-4	0.521	INTRON RhoGAP100F
3R	26059254	3R_26059254_SNP [dm3] 3R_30233532_SNP [dm6]	G	A	2.337e^-4	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12728957	3R_12728957_SNP [dm3] 3R_16903235_SNP [dm6]	G	T	2.338e^-4	0.521	INTRON iab-8
3L	10342752	3L_10342752_SNP [dm3] 3L_10349652_SNP [dm6]	T	A	2.343e^-4	0.521	INTRON CR44327
3L	7950251	3L_7950251_SNP [dm3] 3L_7957151_SNP [dm6]	T	G	2.372e^-4	0.527	INTERGENIC
3R	27822957	3R_27822957_SNP [dm3] 3R_31997235_SNP [dm6]	G	A	2.374e^-4	0.527	INTRON heph
3R	27668924	3R_27668924_SNP [dm3] 3R_31843202_SNP [dm6]	A	T	2.402e^-4	0.527	UTR_3_PRIME RhoGAP100F
3R	27730410	3R_27730410_SNP [dm3] 3R_31904688_SNP [dm6]	C	G	2.402e^-4	0.527	INTRON heph
3R	27783646	3R_27783646_SNP [dm3] 3R_31957924_SNP [dm6]	A	G	2.402e^-4	0.527	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27812504	3R_27812504_DEL [dm3] 3R_31986782_DEL [dm6]	TATG	T	2.402e^-4	0.527	UPSTREAM CG2003 INTRON CG2003 & 1 other
3R	27817341	3R_27817341_SNP [dm3] 3R_31991619_SNP [dm6]	G	A	2.402e^-4	0.527	DOWNSTREAM CG2003 INTRON heph
3R	27835401	3R_27835401_SNP [dm3] 3R_32009679_SNP [dm6]	G	A	2.402e^-4	0.527	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	27842038	3R_27842038_SNP [dm3] 3R_32016316_SNP [dm6]	G	T	2.402e^-4	0.527	UPSTREAM heph EXON CR45557	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27879611	3R_27879611_SNP [dm3] 3R_32053889_SNP [dm6]	T	A	2.402e^-4	0.527	NON_SYNONYMOUS_CODING mod
X	10559409	X_10559409_SNP [dm3] X_10665376_SNP [dm6]	A	C	2.402e^-4	0.527	INTRON X11Lbeta
3L	12427896	3L_12427896_SNP [dm3] 3L_12434796_SNP [dm6]	G	T	2.405e^-4	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7601600	2R_7601600_SNP [dm3] 2R_11714095_SNP [dm6]	A	T	2.414e^-4	0.529	INTRON pyr
3L	19049671	3L_19049671_SNP [dm3] 3L_19056571_SNP [dm6]	A	C	2.419e^-4	0.529	INTERGENIC
3L	4633116	3L_4633116_SNP [dm3] 3L_4633116_SNP [dm6]	T	C	2.431e^-4	0.531	INTRON axo
2R	13418242	2R_13418242_SNP [dm3] 2R_17530737_SNP [dm6]	G	T	2.436e^-4	0.531	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	10736984	3L_10736984_INS [dm3] 3L_10743884_INS [dm6]	C	CC	2.437e^-4	0.531	INTERGENIC
3L	19046782	3L_19046782_SNP [dm3] 3L_19053682_SNP [dm6]	G	C	2.441e^-4	0.532	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
2R	12508594	2R_12508594_DEL [dm3] 2R_16621089_DEL [dm6]	CCCGGTCTGCTGTCGCT...	C	2.445e^-4	0.532	INTRON CG5065	TF binding site mE1_TFBS_cad
3R	15732927	3R_15732927_SNP [dm3] 3R_19907205_SNP [dm6]	C	A	2.454e^-4	0.532	UPSTREAM CR45047 INTRON RhoGAP92B
3R	15732991	3R_15732991_SNP [dm3] 3R_19907269_SNP [dm6]	T	A	2.454e^-4	0.532	UPSTREAM CR45047 INTRON RhoGAP92B
2L	9941770	2L_9941770_SNP [dm3] 2L_9941770_SNP [dm6]	G	A	2.454e^-4	0.532	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17343214	X_17343214_SNP [dm3] X_17449181_SNP [dm6]	G	A	2.457e^-4	0.532	SYNONYMOUS_CODING CG8568 UPSTREAM p-cup
3L	19064692	3L_19064692_SNP [dm3] 3L_19071592_SNP [dm6]	A	T	2.464e^-4	0.532	INTRON Mkp3
3L	5899543	3L_5899543_SNP [dm3] 3L_5906443_SNP [dm6]	A	G	2.465e^-4	0.532	NON_SYNONYMOUS_CODING CG10486 UPSTREAM CG13288	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19098879	3L_19098879_SNP [dm3] 3L_19105779_SNP [dm6]	A	T	2.465e^-4	0.532	UTR_3_PRIME CG14082
2R	18611363	2R_18611363_DEL [dm3] 2R_22723858_DEL [dm6]	CACAAAC	C	2.471e^-4	0.532	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19139867	3R_19139867_SNP [dm3] 3R_23314145_SNP [dm6]	C	A	2.475e^-4	0.532	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19155897	3L_19155897_SNP [dm3] 3L_19162797_SNP [dm6]	A	T	2.476e^-4	0.532	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	3557051	X_3557051_SNP [dm3] X_3663018_SNP [dm6]	A	G	2.477e^-4	0.532	INTRON AstA-R1	transposable element FlyBase
2R	4999055	2R_4999055_SNP [dm3] 2R_9111550_SNP [dm6]	A	G	2.480e^-4	0.532	UTR_3_PRIME tsu & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27711347	3R_27711347_SNP [dm3] 3R_31885625_SNP [dm6]	A	C	2.484e^-4	0.532	INTRON heph	TF binding site mE1_TFBS_Trl
2L	9940673	2L_9940673_SNP [dm3] 2L_9940673_SNP [dm6]	G	A	2.488e^-4	0.532	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853
3L	21387673	3L_21387673_SNP [dm3] 3L_21394573_SNP [dm6]	T	C	2.502e^-4	0.535	INTRON rgn
X	21906190	X_21906190_SNP [dm3] X_22504354_SNP [dm6]	A	T	2.507e^-4	0.535	UTR_3_PRIME l_1_G0196 DOWNSTREAM l_1_G0196 INTRON l_1_G0196
3R	27783727	3R_27783727_SNP [dm3] 3R_31958005_SNP [dm6]	C	T	2.508e^-4	0.535	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19528599	3R_19528599_SNP [dm3] 3R_23702877_SNP [dm6]	G	C	2.512e^-4	0.535	NON_SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148
X	19016760	X_19016760_SNP [dm3] X_19122727_SNP [dm6]	G	A	2.518e^-4	0.536	INTERGENIC
2L	17993873	2L_17993873_SNP [dm3] 2L_17993873_SNP [dm6]	T	G	2.527e^-4	0.536	EXON CR44767
2R	15116440	2R_15116440_SNP [dm3] 2R_19228935_SNP [dm6]	A	C	2.529e^-4	0.536	UPSTREAM cora DOWNSTREAM CG7137 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15235725	2R_15235725_SNP [dm3] 2R_19348220_SNP [dm6]	T	C	2.539e^-4	0.536	INTRON Rgk1
3R	25827511	3R_25827511_SNP [dm3] 3R_30001789_SNP [dm6]	T	C	2.549e^-4	0.536	INTRON Tace	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8095974	3L_8095974_SNP [dm3] 3L_8102874_SNP [dm6]	G	C	2.553e^-4	0.536	INTRON Ect4	TF binding site mE1_TFBS_cad
3R	15918983	3R_15918983_SNP [dm3] 3R_20093261_SNP [dm6]	T	C	2.557e^-4	0.536	INTERGENIC
2L	5881960	2L_5881960_SNP [dm3] 2L_5881960_SNP [dm6]	A	G	2.558e^-4	0.536	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13688566	3L_13688566_SNP [dm3] 3L_13695466_SNP [dm6]	A	G	2.558e^-4	0.536	INTRON bru-3
3L	9852670	3L_9852670_SNP [dm3] 3L_9859570_SNP [dm6]	A	C	2.561e^-4	0.536	UTR_5_PRIME CG10809 DOWNSTREAM iPLA2-VIA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	17339727	2R_17339727_SNP [dm3] 2R_21452222_SNP [dm6]	A	C	2.565e^-4	0.536	INTRON Sdc
2R	11431251	2R_11431251_DEL [dm3] 2R_15543746_DEL [dm6]	TAACTTT	T	2.568e^-4	0.536	DOWNSTREAM CG8192 INTRON eIF2B-gamma	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11854892	X_11854892_SNP [dm3] X_11960859_SNP [dm6]	G	A	2.570e^-4	0.536	INTRON cac	TF binding site mE1_TFBS_HSA
3R	19066161	3R_19066161_SNP [dm3] 3R_23240439_SNP [dm6]	A	G	2.571e^-4	0.536	UPSTREAM CG4467 INTRON CG4467
3R	19066188	3R_19066188_SNP [dm3] 3R_23240466_SNP [dm6]	T	A	2.571e^-4	0.536	UPSTREAM CG4467 INTRON CG4467
3R	19066285	3R_19066285_SNP [dm3] 3R_23240563_SNP [dm6]	A	G	2.571e^-4	0.536	UPSTREAM CG4467 INTRON CG4467
X	15179086	X_15179086_SNP [dm3] X_15285053_SNP [dm6]	A	C	2.571e^-4	0.536	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	306860	3L_306860_SNP [dm3] 3L_306860_SNP [dm6]	T	G	2.573e^-4	0.536	SYNONYMOUS_CODING fwd
3R	19528729	3R_19528729_SNP [dm3] 3R_23703007_SNP [dm6]	A	G	2.575e^-4	0.536	NON_SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148
2R	7900969	2R_7900969_SNP [dm3] 2R_12013464_SNP [dm6]	T	G	2.576e^-4	0.536	INTRON otk	TF binding site mE1_TFBS_Kr
X	5380170	X_5380170_SNP [dm3] X_5486137_SNP [dm6]	G	T	2.582e^-4	0.537	INTRON SPR	TF binding site BDTNP1_TFBS_da
3L	15169204	3L_15169204_SNP [dm3] 3L_15176104_SNP [dm6]	A	C	2.585e^-4	0.537	INTERGENIC
3L	21665069	3L_21665069_INS [dm3] 3L_21671969_INS [dm6]	T	TTGACTATATGTATAT...	2.597e^-4	0.539	UPSTREAM CG11249 INTERGENIC
3R	11841080	3R_11841080_SNP [dm3] 3R_16015358_SNP [dm6]	C	T	2.606e^-4	0.539	INTRON GATAe
3R	11841155	3R_11841155_SNP [dm3] 3R_16015433_SNP [dm6]	T	C	2.606e^-4	0.539	INTRON GATAe
3L	4514221	3L_4514221_SNP [dm3] 3L_4514221_SNP [dm6]	G	A	2.617e^-4	0.541	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
3L	19062494	3L_19062494_SNP [dm3] 3L_19069394_SNP [dm6]	A	C	2.619e^-4	0.541	INTRON Mkp3	TF binding site mE1_TFBS_cad
3R	22709010	3R_22709010_SNP [dm3] 3R_26883288_SNP [dm6]	A	G	2.634e^-4	0.543	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16281955	3L_16281955_SNP [dm3] 3L_16288855_SNP [dm6]	T	A	2.638e^-4	0.543	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19135658	3R_19135658_SNP [dm3] 3R_23309936_SNP [dm6]	A	G	2.643e^-4	0.544	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	19048229	3L_19048229_SNP [dm3] 3L_19055129_SNP [dm6]	C	T	2.659e^-4	0.546	INTERGENIC	regulatory region REDfly_CRMs
X	15327475	X_15327475_SNP [dm3] X_15433442_SNP [dm6]	C	G	2.661e^-4	0.546	INTRON Cngl	transposable element FlyBase
2R	14447166	2R_14447166_SNP [dm3] 2R_18559661_SNP [dm6]	T	C	2.662e^-4	0.546	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_chinmo
3R	20706174	3R_20706174_SNP [dm3] 3R_24880452_SNP [dm6]	T	C	2.666e^-4	0.546	NON_SYNONYMOUS_CODING CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27793519	3R_27793519_SNP [dm3] 3R_31967797_SNP [dm6]	G	A	2.683e^-4	0.549	INTRON heph
2R	13600569	2R_13600569_SNP [dm3] 2R_17713064_SNP [dm6]	T	G	2.693e^-4	0.549	INTRON CG6424
2R	16400182	2R_16400182_SNP [dm3] 2R_20512677_SNP [dm6]	A	C	2.709e^-4	0.549	DOWNSTREAM CG13426 & 1 other INTERGENIC
2R	16190594	2R_16190594_INS [dm3] 2R_20303089_INS [dm6]	A	AGGCATGGTG	2.718e^-4	0.549	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
2R	16190597	2R_16190597_SNP [dm3] 2R_20303092_SNP [dm6]	A	T	2.718e^-4	0.549	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
2L	1110345	2L_1110345_SNP [dm3] 2L_1110345_SNP [dm6]	C	T	2.720e^-4	0.549	SYNONYMOUS_CODING CG14339
3L	19050885	3L_19050885_INS [dm3] 3L_19057785_INS [dm6]	A	ACATACATTTTTTA...	2.725e^-4	0.549	INTERGENIC
3L	19050895	3L_19050895_DEL [dm3] 3L_19057795_DEL [dm6]	AA	A	2.725e^-4	0.549	INTERGENIC
3L	19050906	3L_19050906_DEL [dm3] 3L_19057806_DEL [dm6]	AGA	A	2.725e^-4	0.549	INTERGENIC
3L	19050911	3L_19050911_SNP [dm3] 3L_19057811_SNP [dm6]	A	T	2.725e^-4	0.549	INTERGENIC
3L	19050913	3L_19050913_SNP [dm3] 3L_19057813_SNP [dm6]	T	A	2.725e^-4	0.549	INTERGENIC
3L	19050914	3L_19050914_SNP [dm3] 3L_19057814_SNP [dm6]	T	A	2.725e^-4	0.549	INTERGENIC
3L	19050940	3L_19050940_SNP [dm3] 3L_19057840_SNP [dm6]	T	A	2.725e^-4	0.549	INTERGENIC
3L	19050941	3L_19050941_SNP [dm3] 3L_19057841_SNP [dm6]	C	T	2.725e^-4	0.549	INTERGENIC
3L	12934831	3L_12934831_DEL [dm3] 3L_12941731_DEL [dm6]	TATGTATG	CAATCA	2.726e^-4	0.549	INTERGENIC
3L	19244186	3L_19244186_SNP [dm3] 3L_19251086_SNP [dm6]	C	T	2.733e^-4	0.55	INTERGENIC
X	9856235	X_9856235_SNP [dm3] X_9962202_SNP [dm6]	C	T	2.738e^-4	0.55	INTERGENIC
3L	21497019	3L_21497019_SNP [dm3] 3L_21503919_SNP [dm6]	T	A	2.746e^-4	0.551	UTR_3_PRIME Est-Q INTRON Glg1
3L	11363610	3L_11363610_SNP [dm3] 3L_11370510_SNP [dm6]	A	C	2.751e^-4	0.551	INTERGENIC
X	20968150	X_20968150_SNP [dm3] X_21097123_SNP [dm6]	G	T	2.766e^-4	0.551	INTRON stg1 & 2 others	transposable element FlyBase
3L	5330004	3L_5330004_SNP [dm3] 3L_5336904_SNP [dm6]	A	G	2.769e^-4	0.551	INTERGENIC
X	21985112	X_21985112_DEL [dm3] X_22583276_DEL [dm6]	TT	T	2.769e^-4	0.551	DOWNSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	590331	4_590331_SNP [dm3] 4_569705_SNP [dm6]	C	T	2.770e^-4	0.551	INTRON CG1970	TF binding site BDTNP1_TFBS_twi
2L	18656791	2L_18656791_SNP [dm3] 2L_18656791_SNP [dm6]	C	T	2.770e^-4	0.551	INTRON MESR3
2R	16895456	2R_16895456_SNP [dm3] 2R_21007951_SNP [dm6]	T	C	2.772e^-4	0.551	NON_SYNONYMOUS_CODING CG30291 DOWNSTREAM CG10543
2R	4183992	2R_4183992_SNP [dm3] 2R_8296487_SNP [dm6]	T	A	2.774e^-4	0.551	INTERGENIC
X	12890538	X_12890538_SNP [dm3] X_12996505_SNP [dm6]	A	C	2.775e^-4	0.551	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15060016	X_15060016_SNP [dm3] X_15165983_SNP [dm6]	T	A	2.776e^-4	0.551	INTERGENIC
3R	22533824	3R_22533824_SNP [dm3] 3R_26708102_SNP [dm6]	G	A	2.784e^-4	0.552	INTRON amon
2R	12888560	2R_12888560_SNP [dm3] 2R_17001055_SNP [dm6]	C	A	2.784e^-4	0.552	SYNONYMOUS_CODING ste24a UPSTREAM ste24b & 1 other	TF binding site mE1_TFBS_sens
2R	19306990	2R_19306990_SNP [dm3] 2R_23419467_SNP [dm6]	C	G	2.786e^-4	0.552	INTRON CG9812
3L	21048653	3L_21048653_SNP [dm3] 3L_21055553_SNP [dm6]	G	A	2.791e^-4	0.552	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9513488	2R_9513488_SNP [dm3] 2R_13625983_SNP [dm6]	C	T	2.794e^-4	0.552	INTRON fas
2R	16554291	2R_16554291_SNP [dm3] 2R_20666786_SNP [dm6]	G	A	2.800e^-4	0.553	DOWNSTREAM exu INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	19242552	3R_19242552_SNP [dm3] 3R_23416830_SNP [dm6]	G	T	2.805e^-4	0.553	INTRON CG4374	TF binding site mE1_TFBS_chinmo
X	13823775	X_13823775_SNP [dm3] X_13929742_SNP [dm6]	A	G	2.811e^-4	0.554	INTRON mamo
2L	13109793	2L_13109793_SNP [dm3] 2L_13109793_SNP [dm6]	G	A	2.829e^-4	0.555	DOWNSTREAM CG5142 INTERGENIC
3L	14992261	3L_14992261_SNP [dm3] 3L_14999161_SNP [dm6]	G	A	2.839e^-4	0.555	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15196383	2R_15196383_SNP [dm3] 2R_19308878_SNP [dm6]	G	C	2.841e^-4	0.555	INTRON EndoB
3L	10628223	3L_10628223_SNP [dm3] 3L_10635123_SNP [dm6]	T	C	2.848e^-4	0.555	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10628232	3L_10628232_SNP [dm3] 3L_10635132_SNP [dm6]	G	A	2.848e^-4	0.555	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9676720	2L_9676720_SNP [dm3] 2L_9676720_SNP [dm6]	C	T	2.849e^-4	0.555	INTERGENIC
2R	18501488	2R_18501488_SNP [dm3] 2R_22613983_SNP [dm6]	C	T	2.849e^-4	0.555	UPSTREAM CG33143 & 1 other INTERGENIC
3R	12889427	3R_12889427_SNP [dm3] 3R_17063705_SNP [dm6]	C	G	2.850e^-4	0.555	INTRON Dad
3R	27842339	3R_27842339_SNP [dm3] 3R_32016617_SNP [dm6]	A	G	2.850e^-4	0.555	EXON CR45557
3R	19534496	3R_19534496_SNP [dm3] 3R_23708774_SNP [dm6]	G	A	2.865e^-4	0.555	DOWNSTREAM CG31414 INTERGENIC
X	19023026	X_19023026_SNP [dm3] X_19128993_SNP [dm6]	A	C	2.867e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12091019	3L_12091019_SNP [dm3] 3L_12097919_SNP [dm6]	T	G	2.868e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14951217	3L_14951217_SNP [dm3] 3L_14958117_SNP [dm6]	G	A	2.868e^-4	0.555	INTERGENIC
3L	14951225	3L_14951225_SNP [dm3] 3L_14958125_SNP [dm6]	A	T	2.868e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	26981530	3R_26981530_DEL [dm3] 3R_31155808_DEL [dm6]	GG	G	2.868e^-4	0.555	INTRON Gycbeta100B
X	3546855	X_3546855_SNP [dm3] X_3652822_SNP [dm6]	A	G	2.878e^-4	0.555	INTRON AstA-R1
2R	16190519	2R_16190519_SNP [dm3] 2R_20303014_SNP [dm6]	A	T	2.880e^-4	0.555	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
2R	16190538	2R_16190538_SNP [dm3] 2R_20303033_SNP [dm6]	G	A	2.880e^-4	0.555	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
2R	16190553	2R_16190553_SNP [dm3] 2R_20303048_SNP [dm6]	T	C	2.880e^-4	0.555	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
X	17300809	X_17300809_SNP [dm3] X_17406776_SNP [dm6]	G	A	2.882e^-4	0.555	INTERGENIC
2L	3466474	2L_3466474_SNP [dm3] 2L_3466474_SNP [dm6]	A	T	2.884e^-4	0.555	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3420192	3L_3420192_SNP [dm3] 3L_3420192_SNP [dm6]	A	G	2.885e^-4	0.555	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19057133	3L_19057133_SNP [dm3] 3L_19064033_SNP [dm6]	A	C	2.893e^-4	0.555	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	20844800	2L_20844800_SNP [dm3] 2L_20844800_SNP [dm6]	C	G	2.893e^-4	0.555	INTRON CG31676
3L	19069713	3L_19069713_SNP [dm3] 3L_19076613_SNP [dm6]	C	T	2.897e^-4	0.555	INTRON Mkp3
X	18110266	X_18110266_DEL [dm3] X_18216233_DEL [dm6]	TTT	T	2.902e^-4	0.555	INTRON CG33639
2R	9591743	2R_9591743_SNP [dm3] 2R_13704238_SNP [dm6]	T	C	2.906e^-4	0.555	INTRON fas
3R	25287579	3R_25287579_SNP [dm3] 3R_29461857_SNP [dm6]	C	T	2.907e^-4	0.555	UTR_5_PRIME Ptp99A UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	9054176	2L_9054176_SNP [dm3] 2L_9054176_SNP [dm6]	G	C	2.909e^-4	0.555	INTRON CG31708
3L	14955046	3L_14955046_SNP [dm3] 3L_14961946_SNP [dm6]	T	C	2.911e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15197832	2R_15197832_INS [dm3] 2R_19310327_INS [dm6]	T	TT	2.919e^-4	0.555	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
2L	11856343	2L_11856343_SNP [dm3] 2L_11856343_SNP [dm6]	T	A	2.919e^-4	0.555	INTRON Pde1c
2L	11856350	2L_11856350_SNP [dm3] 2L_11856350_SNP [dm6]	C	T	2.919e^-4	0.555	INTRON Pde1c
3L	22116116	3L_22116116_SNP [dm3] 3L_22123016_SNP [dm6]	T	C	2.929e^-4	0.556	DOWNSTREAM CR45236 & 1 other INTERGENIC
X	3546772	X_3546772_SNP [dm3] X_3652739_SNP [dm6]	T	C	2.931e^-4	0.556	INTRON AstA-R1
3R	10369561	3R_10369561_SNP [dm3] 3R_14543839_SNP [dm6]	A	C	2.940e^-4	0.557	INTRON Pde6
2R	7141810	2R_7141810_SNP [dm3] 2R_11254305_SNP [dm6]	T	C	2.951e^-4	0.558	UPSTREAM Cpr47Ea & 1 other INTERGENIC
3R	19139595	3R_19139595_SNP [dm3] 3R_23313873_SNP [dm6]	G	A	2.951e^-4	0.558	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	2.974e^-4	0.56	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	18112033	X_18112033_SNP [dm3] X_18218000_SNP [dm6]	T	A	2.974e^-4	0.56	INTRON CG33639
X	18112059	X_18112059_SNP [dm3] X_18218026_SNP [dm6]	G	A	2.974e^-4	0.56	INTRON CG33639
2R	9149764	2R_9149764_SNP [dm3] 2R_13262259_SNP [dm6]	G	A	2.975e^-4	0.56	UPSTREAM CG42319 INTRON CG42319
X	15267136	X_15267136_SNP [dm3] X_15373103_SNP [dm6]	C	T	2.978e^-4	0.56	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3787736	2L_3787736_SNP [dm3] 2L_3787736_SNP [dm6]	G	T	2.982e^-4	0.56	INTRON CG3921	TF binding site mE1_TFBS_Trl
2L	5462536	2L_5462536_SNP [dm3] 2L_5462536_SNP [dm6]	G	T	2.984e^-4	0.56	INTRON mid	TF binding site BDTNP1_TFBS_dl
2R	20690963	2R_20690963_SNP [dm3] 2R_24803440_SNP [dm6]	G	A	2.988e^-4	0.56	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	12955695	2L_12955695_SNP [dm3] 2L_12955695_SNP [dm6]	C	A	2.991e^-4	0.56	INTERGENIC
2L	12959314	2L_12959314_DEL [dm3] 2L_12959314_DEL [dm6]	GATCG	G	2.991e^-4	0.56	INTERGENIC
2L	12963229	2L_12963229_SNP [dm3] 2L_12963229_SNP [dm6]	G	A	2.991e^-4	0.56	INTERGENIC
3R	10784175	3R_10784175_SNP [dm3] 3R_14958453_SNP [dm6]	G	A	3.010e^-4	0.561	INTERGENIC
2L	17880384	2L_17880384_SNP [dm3] 2L_17880384_SNP [dm6]	G	T	3.011e^-4	0.561	INTERGENIC
3L	19065728	3L_19065728_SNP [dm3] 3L_19072628_SNP [dm6]	C	T	3.013e^-4	0.561	UPSTREAM Mkp3 INTRON Mkp3
3R	4362335	3R_4362335_SNP [dm3] 3R_8536613_SNP [dm6]	G	C	3.014e^-4	0.561	INTERGENIC
2L	4261861	2L_4261861_SNP [dm3] 2L_4261861_SNP [dm6]	G	C	3.015e^-4	0.561	UPSTREAM CR44080 INTERGENIC
3R	13503228	3R_13503228_SNP [dm3] 3R_17677506_SNP [dm6]	T	C	3.020e^-4	0.561	SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad
3R	4290134	3R_4290134_SNP [dm3] 3R_8464412_SNP [dm6]	T	A	3.034e^-4	0.563	INTRON CG45263	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6004666	2R_6004666_SNP [dm3] 2R_10117161_SNP [dm6]	T	C	3.036e^-4	0.563	UTR_3_PRIME Pfk UPSTREAM dmpd DOWNSTREAM Pfk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11856320	2L_11856320_SNP [dm3] 2L_11856320_SNP [dm6]	T	A	3.041e^-4	0.564	INTRON Pde1c
X	13823776	X_13823776_SNP [dm3] X_13929743_SNP [dm6]	T	C	3.051e^-4	0.565	INTRON mamo
2L	3787756	2L_3787756_SNP [dm3] 2L_3787756_SNP [dm6]	A	T	3.062e^-4	0.566	INTRON CG3921	TF binding site mE1_TFBS_Trl
3L	8625145	3L_8625145_SNP [dm3] 3L_8632045_SNP [dm6]	C	A	3.062e^-4	0.566	SYNONYMOUS_CODING Cdc6 INTRON Zasp66
3L	19092167	3L_19092167_SNP [dm3] 3L_19099067_SNP [dm6]	G	A	3.081e^-4	0.568	DOWNSTREAM Gem2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	19097812	3L_19097812_SNP [dm3] 3L_19104712_SNP [dm6]	G	A	3.081e^-4	0.568	DOWNSTREAM CG14082 INTERGENIC
2L	12519794	2L_12519794_SNP [dm3] 2L_12519794_SNP [dm6]	A	T	3.086e^-4	0.568	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	14955122	3L_14955122_SNP [dm3] 3L_14962022_SNP [dm6]	A	T	3.089e^-4	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12152563	2L_12152563_SNP [dm3] 2L_12152563_SNP [dm6]	G	A	3.094e^-4	0.568	INTRON CG31760
2L	5783401	2L_5783401_SNP [dm3] 2L_5783401_SNP [dm6]	T	G	3.110e^-4	0.568	UPSTREAM CG31913 INTRON CG9171
2R	8855615	2R_8855615_SNP [dm3] 2R_12968110_SNP [dm6]	T	A	3.114e^-4	0.568	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1721961	3L_1721961_SNP [dm3] 3L_1721961_SNP [dm6]	T	C	3.121e^-4	0.568	SYNONYMOUS_CODING CG18171 INTRON drpr
2R	18686262	2R_18686262_SNP [dm3] 2R_22798757_SNP [dm6]	A	T	3.125e^-4	0.568	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

Progeny_Total phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results