DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.024e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.05777

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.9695	0.0848

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1615 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	3142638	2L_3142638_SNP [dm3] 2L_3142638_SNP [dm6]	G	A	2.552e^-6	0.852	INTRON toc
3L	10192507	3L_10192507_SNP [dm3] 3L_10199407_SNP [dm6]	G	T	5.150e^-6	0.852	INTRON ect
3L	20851112	3L_20851112_SNP [dm3] 3L_20858012_SNP [dm6]	G	T	6.585e^-6	0.852	INTRON CG32432
2R	13788348	2R_13788348_SNP [dm3] 2R_17900843_SNP [dm6]	G	A	8.232e^-6	0.852	INTRON Elk
3R	19805638	3R_19805638_SNP [dm3] 3R_23979916_SNP [dm6]	A	T	9.537e^-6	0.852	INTRON CG31140
2R	16355813	2R_16355813_SNP [dm3] 2R_20468308_SNP [dm6]	C	T	9.829e^-6	0.852	SYNONYMOUS_CODING CG12484
2L	3143138	2L_3143138_SNP [dm3] 2L_3143138_SNP [dm6]	C	T	1.062e^-5	0.852	INTRON toc	TF binding site mE1_TFBS_inv
2L	3143163	2L_3143163_DEL [dm3] 2L_3143163_DEL [dm6]	GCTGG	A	1.062e^-5	0.852	INTRON toc	TF binding site mE1_TFBS_inv
3L	20851225	3L_20851225_DEL [dm3] 3L_20858125_DEL [dm6]	GATACCATCATTTTTGAGGC...	G	1.185e^-5	0.852	INTRON CG32432
3L	20852783	3L_20852783_SNP [dm3] 3L_20859683_SNP [dm6]	T	A	1.236e^-5	0.852	NON_SYNONYMOUS_CODING CG32432	TF binding site mE1_TFBS_chinmo
3R	22903157	3R_22903157_SNP [dm3] 3R_27077435_SNP [dm6]	C	T	1.319e^-5	0.852	INTRON CG14257
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	1.447e^-5	0.852	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	22231838	3R_22231838_SNP [dm3] 3R_26406116_SNP [dm6]	T	A	1.793e^-5	0.852	INTERGENIC
3R	13960016	3R_13960016_SNP [dm3] 3R_18134294_SNP [dm6]	A	G	1.897e^-5	0.852	UTR_3_PRIME sr DOWNSTREAM sr
2L	11131806	2L_11131806_SNP [dm3] 2L_11131806_SNP [dm6]	C	T	1.931e^-5	0.852	INTRON CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7973034	X_7973034_SNP [dm3] X_8079001_SNP [dm6]	C	T	1.982e^-5	0.852	DOWNSTREAM CG1571 INTRON CG2254
3R	19946204	3R_19946204_SNP [dm3] 3R_24120482_SNP [dm6]	A	T	1.998e^-5	0.852	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_chinmo
3L	20851912	3L_20851912_SNP [dm3] 3L_20858812_SNP [dm6]	G	A	2.345e^-5	0.852	INTRON CG32432
2L	3142730	2L_3142730_SNP [dm3] 2L_3142730_SNP [dm6]	T	C	2.434e^-5	0.852	INTRON toc
X	16941451	X_16941451_SNP [dm3] X_17047418_SNP [dm6]	G	T	2.442e^-5	0.852	INTRON CG45002
3L	9410590	3L_9410590_SNP [dm3] 3L_9417490_SNP [dm6]	A	T	2.494e^-5	0.852	UPSTREAM CG3982 INTRON CG3967
X	7961421	X_7961421_SNP [dm3] X_8067388_SNP [dm6]	T	C	2.768e^-5	0.852	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_sens
X	5257980	X_5257980_SNP [dm3] X_5363947_SNP [dm6]	A	T	2.817e^-5	0.852	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3143107	2L_3143107_INS [dm3] 2L_3143107_INS [dm6]	T	TT	2.949e^-5	0.852	INTRON toc	TF binding site mE1_TFBS_inv
X	16801410	X_16801410_SNP [dm3] X_16907377_SNP [dm6]	C	T	2.951e^-5	0.852	INTRON CR44754
X	4134019	X_4134019_SNP [dm3] X_4239986_SNP [dm6]	T	A	3.011e^-5	0.852	INTERGENIC
3R	5154392	3R_5154392_SNP [dm3] 3R_9328670_SNP [dm6]	A	T	3.112e^-5	0.852	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	7757482	3R_7757482_SNP [dm3] 3R_11931760_SNP [dm6]	C	T	3.112e^-5	0.852	SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	7757488	3R_7757488_SNP [dm3] 3R_11931766_SNP [dm6]	T	C	3.112e^-5	0.852	SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	22231837	3R_22231837_SNP [dm3] 3R_26406115_SNP [dm6]	G	A	3.116e^-5	0.852	INTERGENIC
3R	22215366	3R_22215366_SNP [dm3] 3R_26389644_SNP [dm6]	A	C	3.383e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12662241	3L_12662241_SNP [dm3] 3L_12669141_SNP [dm6]	T	C	3.696e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8788544	2R_8788544_SNP [dm3] 2R_12901039_SNP [dm6]	T	C	3.750e^-5	0.852	INTERGENIC
2L	19613013	2L_19613013_SNP [dm3] 2L_19613013_SNP [dm6]	A	G	3.890e^-5	0.852	INTRON Lar
2R	5544552	2R_5544552_SNP [dm3] 2R_9657047_SNP [dm6]	G	A	3.922e^-5	0.852	INTRON Mmp2
2R	7463785	2R_7463785_DEL [dm3] 2R_11576280_DEL [dm6]	TTA	T	3.976e^-5	0.852	INTERGENIC
2R	7463790	2R_7463790_SNP [dm3] 2R_11576285_SNP [dm6]	A	T	3.976e^-5	0.852	INTERGENIC
X	12581996	X_12581996_SNP [dm3] X_12687963_SNP [dm6]	T	G	3.995e^-5	0.852	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12896929	3L_12896929_SNP [dm3] 3L_12903829_SNP [dm6]	A	T	4.290e^-5	0.852	UPSTREAM CG32117 INTERGENIC
3R	7755204	3R_7755204_SNP [dm3] 3R_11929482_SNP [dm6]	A	G	4.373e^-5	0.852	INTRON Cad87A
2L	2061536	2L_2061536_SNP [dm3] 2L_2061536_SNP [dm6]	T	C	4.417e^-5	0.852	INTRON dpr3
3R	19326443	3R_19326443_SNP [dm3] 3R_23500721_SNP [dm6]	G	C	4.483e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12904166	2L_12904166_SNP [dm3] 2L_12904166_SNP [dm6]	T	A	4.561e^-5	0.852	INTERGENIC
3R	9962853	3R_9962853_SNP [dm3] 3R_14137131_SNP [dm6]	C	A	4.609e^-5	0.852	INTERGENIC
X	10924503	X_10924503_SNP [dm3] X_11030470_SNP [dm6]	C	A	4.609e^-5	0.852	INTRON CG42339
X	10924541	X_10924541_SNP [dm3] X_11030508_SNP [dm6]	T	C	4.609e^-5	0.852	INTRON CG42339
2R	3643913	2R_3643913_SNP [dm3] 2R_7756408_SNP [dm6]	T	C	4.913e^-5	0.852	INTRON CG30497 & 1 other
2L	11645865	2L_11645865_SNP [dm3] 2L_11645865_SNP [dm6]	G	T	4.920e^-5	0.852	SPLICE_SITE_REGION CG6614 INTRON CG6614
3L	10223317	3L_10223317_SNP [dm3] 3L_10230217_SNP [dm6]	G	T	4.922e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	4632249	X_4632249_SNP [dm3] X_4738216_SNP [dm6]	G	A	4.929e^-5	0.852	INTERGENIC
3L	16915743	3L_16915743_SNP [dm3] 3L_16922643_SNP [dm6]	A	T	4.984e^-5	0.852	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
3R	22194522	3R_22194522_SNP [dm3] 3R_26368800_SNP [dm6]	C	A	4.985e^-5	0.852	INTERGENIC
2R	18641241	2R_18641241_SNP [dm3] 2R_22753736_SNP [dm6]	T	C	4.995e^-5	0.852	INTRON CG42260
3R	22231826	3R_22231826_SNP [dm3] 3R_26406104_SNP [dm6]	T	A	5.021e^-5	0.852	INTERGENIC
3R	7800347	3R_7800347_SNP [dm3] 3R_11974625_SNP [dm6]	A	G	5.159e^-5	0.852	UTR_5_PRIME Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3143104	2L_3143104_SNP [dm3] 2L_3143104_SNP [dm6]	A	G	5.159e^-5	0.852	INTRON toc	TF binding site mE1_TFBS_inv
X	10924466	X_10924466_SNP [dm3] X_11030433_SNP [dm6]	A	C	5.240e^-5	0.852	INTRON CG42339
X	10924485	X_10924485_SNP [dm3] X_11030452_SNP [dm6]	T	G	5.240e^-5	0.852	INTRON CG42339
2L	1436853	2L_1436853_SNP [dm3] 2L_1436853_SNP [dm6]	G	T	5.556e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7957332	3L_7957332_SNP [dm3] 3L_7964232_SNP [dm6]	T	C	5.582e^-5	0.852	INTERGENIC
2L	2060689	2L_2060689_SNP [dm3] 2L_2060689_SNP [dm6]	C	G	5.640e^-5	0.852	INTRON dpr3
2L	8081869	2L_8081869_SNP [dm3] 2L_8081869_SNP [dm6]	A	C	5.844e^-5	0.852	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16951012	2R_16951012_SNP [dm3] 2R_21063507_SNP [dm6]	T	G	5.874e^-5	0.852	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19329699	3R_19329699_SNP [dm3] 3R_23503977_SNP [dm6]	G	T	5.898e^-5	0.852	INTERGENIC
X	10924456	X_10924456_SNP [dm3] X_11030423_SNP [dm6]	C	A	5.945e^-5	0.852	INTRON CG42339
2R	7463791	2R_7463791_INS [dm3] 2R_11576286_INS [dm6]	A	AGCAGCCTAACC...	5.973e^-5	0.852	INTERGENIC
3R	7800242	3R_7800242_SNP [dm3] 3R_11974520_SNP [dm6]	T	G	5.994e^-5	0.852	DOWNSTREAM CG10005 INTRON Tango9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19329925	3R_19329925_SNP [dm3] 3R_23504203_SNP [dm6]	T	G	6.210e^-5	0.852	INTERGENIC
2L	18917277	2L_18917277_SNP [dm3] 2L_18917277_SNP [dm6]	A	G	6.273e^-5	0.852	SYNONYMOUS_CODING ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11115561	2L_11115561_SNP [dm3] 2L_11115561_SNP [dm6]	G	C	6.325e^-5	0.852	SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230
3L	12897544	3L_12897544_SNP [dm3] 3L_12904444_SNP [dm6]	T	A	6.343e^-5	0.852	UPSTREAM CG32117 INTERGENIC
2R	18922229	2R_18922229_SNP [dm3] 2R_23034706_SNP [dm6]	G	A	6.493e^-5	0.852	INTRON twi & 1 other	TF binding site mE1_TFBS_cad
3R	22635518	3R_22635518_SNP [dm3] 3R_26809796_SNP [dm6]	T	C	6.572e^-5	0.852	INTRON Tl
3R	2789909	3R_2789909_SNP [dm3] 3R_6964187_SNP [dm6]	C	A	6.709e^-5	0.852	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2R	5956154	2R_5956154_SNP [dm3] 2R_10068649_SNP [dm6]	G	A	6.726e^-5	0.852	UTR_5_PRIME cdc2rk UPSTREAM CG12920	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3664942	2L_3664942_SNP [dm3] 2L_3664942_SNP [dm6]	G	A	6.802e^-5	0.852	INTRON CG34340
3L	12908247	3L_12908247_SNP [dm3] 3L_12915147_SNP [dm6]	C	G	6.866e^-5	0.852	INTERGENIC
3R	15002610	3R_15002610_SNP [dm3] 3R_19176888_SNP [dm6]	G	A	6.933e^-5	0.852	UPSTREAM CG14282 INTERGENIC
2R	18194099	2R_18194099_SNP [dm3] 2R_22306594_SNP [dm6]	G	T	6.954e^-5	0.852	INTRON wdp
2R	13203912	2R_13203912_SNP [dm3] 2R_17316407_SNP [dm6]	T	C	7.307e^-5	0.852	INTRON mbl
3L	11352480	3L_11352480_SNP [dm3] 3L_11359380_SNP [dm6]	A	G	7.316e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
X	18498828	X_18498828_SNP [dm3] X_18604795_SNP [dm6]	T	A	7.562e^-5	0.852	INTERGENIC
2R	16310082	2R_16310082_SNP [dm3] 2R_20422577_SNP [dm6]	G	A	7.612e^-5	0.852	INTERGENIC
2R	16310085	2R_16310085_SNP [dm3] 2R_20422580_SNP [dm6]	T	A	7.612e^-5	0.852	INTERGENIC
2L	8081731	2L_8081731_SNP [dm3] 2L_8081731_SNP [dm6]	A	T	7.724e^-5	0.852	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20850768	3L_20850768_SNP [dm3] 3L_20857668_SNP [dm6]	C	A	7.945e^-5	0.852	INTRON CG32432
2L	3142731	2L_3142731_SNP [dm3] 2L_3142731_SNP [dm6]	T	C	7.955e^-5	0.852	INTRON toc
X	9818314	X_9818314_SNP [dm3] X_9924281_SNP [dm6]	A	G	8.117e^-5	0.852	INTERGENIC
3R	25337356	3R_25337356_SNP [dm3] 3R_29511634_SNP [dm6]	A	G	8.123e^-5	0.852	INTERGENIC
3R	25337358	3R_25337358_SNP [dm3] 3R_29511636_SNP [dm6]	C	A	8.123e^-5	0.852	INTERGENIC
X	14341074	X_14341074_SNP [dm3] X_14447041_SNP [dm6]	A	T	8.188e^-5	0.852	INTRON dpr8
2L	2061538	2L_2061538_SNP [dm3] 2L_2061538_SNP [dm6]	G	T	8.376e^-5	0.852	INTRON dpr3
2L	16433409	2L_16433409_SNP [dm3] 2L_16433409_SNP [dm6]	T	G	8.382e^-5	0.852	INTRON CG5888
X	8262059	X_8262059_SNP [dm3] X_8368026_SNP [dm6]	G	A	8.468e^-5	0.852	UPSTREAM nAChRalpha3 INTERGENIC
X	8262374	X_8262374_DEL [dm3] X_8368341_DEL [dm6]	TGTTGGTTG	AACCAA	8.647e^-5	0.852	INTERGENIC
3R	26776706	3R_26776706_SNP [dm3] 3R_30950984_SNP [dm6]	G	A	8.655e^-5	0.852	INTERGENIC
2R	4414760	2R_4414760_SNP [dm3] 2R_8527255_SNP [dm6]	A	C	8.802e^-5	0.852	INTRON mtt
X	8262386	X_8262386_INS [dm3] X_8368353_INS [dm6]	C	CC	8.821e^-5	0.852	INTERGENIC
2L	7198666	2L_7198666_SNP [dm3] 2L_7198666_SNP [dm6]	C	A	9.055e^-5	0.852	INTRON CG4502
X	5257728	X_5257728_SNP [dm3] X_5363695_SNP [dm6]	A	T	9.066e^-5	0.852	INTRON SK	TF binding site BDTNP1_TFBS_dl
2L	14862824	2L_14862824_SNP [dm3] 2L_14862824_SNP [dm6]	A	C	9.294e^-5	0.852	INTERGENIC
2L	5650483	2L_5650483_SNP [dm3] 2L_5650483_SNP [dm6]	C	T	9.408e^-5	0.852	INTRON CG31646
2L	21930878	2L_21930878_INS [dm3] 2L_21930878_INS [dm6]	A	AA	9.448e^-5	0.852	EXON CR45334
2R	4801700	2R_4801700_INS [dm3] 2R_8914195_INS [dm6]	A	ACTTATTTTTACACTTTCTT...	9.479e^-5	0.852	UPSTREAM lin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Stat92E mE1_TFBS_Ubx
X	11279117	X_11279117_SNP [dm3] X_11385084_SNP [dm6]	A	C	9.493e^-5	0.852	INTRON dlg1
X	11661561	X_11661561_SNP [dm3] X_11767528_SNP [dm6]	G	A	9.527e^-5	0.852	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	9509229	2R_9509229_SNP [dm3] 2R_13621724_SNP [dm6]	A	G	9.609e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1550516	3L_1550516_SNP [dm3] 3L_1550516_SNP [dm6]	C	T	9.627e^-5	0.852	INTRON Cct1	TF binding site BDTNP1_TFBS_prd
3L	6648254	3L_6648254_SNP [dm3] 3L_6655154_SNP [dm6]	A	G	9.858e^-5	0.852	INTERGENIC
3R	22007896	3R_22007896_SNP [dm3] 3R_26182174_SNP [dm6]	C	A	9.858e^-5	0.852	INTRON CG31323
3R	27189470	3R_27189470_SNP [dm3] 3R_31363748_SNP [dm6]	A	C	9.972e^-5	0.852	INTRON CG34347
2L	7198639	2L_7198639_SNP [dm3] 2L_7198639_SNP [dm6]	G	A	1.005e^-4	0.852	INTRON CG4502
2L	7198658	2L_7198658_INS [dm3] 2L_7198658_INS [dm6]	A	ACT	1.005e^-4	0.852	INTRON CG4502
2L	7190296	2L_7190296_SNP [dm3] 2L_7190296_SNP [dm6]	C	G	1.010e^-4	0.852	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
2R	17558432	2R_17558432_SNP [dm3] 2R_21670927_SNP [dm6]	A	C	1.018e^-4	0.852	SYNONYMOUS_CODING NC2alpha UPSTREAM CG15676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5486624	X_5486624_SNP [dm3] X_5592591_SNP [dm6]	T	A	1.068e^-4	0.852	INTERGENIC
2R	18514719	2R_18514719_SNP [dm3] 2R_22627214_SNP [dm6]	G	C	1.079e^-4	0.852	INTRON CG33143
2L	20054807	2L_20054807_SNP [dm3] 2L_20054807_SNP [dm6]	C	T	1.111e^-4	0.852	INTRON sNPF
2L	14339679	2L_14339679_SNP [dm3] 2L_14339679_SNP [dm6]	A	G	1.135e^-4	0.852	NON_SYNONYMOUS_CODING CG15286 INTRON CG33090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14339680	2L_14339680_SNP [dm3] 2L_14339680_SNP [dm6]	C	G	1.135e^-4	0.852	NON_SYNONYMOUS_CODING CG15286 INTRON CG33090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14862894	2L_14862894_SNP [dm3] 2L_14862894_SNP [dm6]	G	T	1.145e^-4	0.852	INTERGENIC
2L	14862895	2L_14862895_SNP [dm3] 2L_14862895_SNP [dm6]	G	A	1.145e^-4	0.852	INTERGENIC
2L	14862902	2L_14862902_SNP [dm3] 2L_14862902_SNP [dm6]	A	G	1.145e^-4	0.852	INTERGENIC
2R	15513022	2R_15513022_SNP [dm3] 2R_19625517_SNP [dm6]	A	G	1.159e^-4	0.852	INTRON sm	TF binding site mE1_TFBS_cad
2L	11058933	2L_11058933_SNP [dm3] 2L_11058933_SNP [dm6]	T	C	1.178e^-4	0.852	INTRON Samuel	TF binding site BDTNP1_TFBS_dl
3R	17001426	3R_17001426_SNP [dm3] 3R_21175704_SNP [dm6]	T	A	1.207e^-4	0.852	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad
3L	15382834	3L_15382834_SNP [dm3] 3L_15389734_SNP [dm6]	A	G	1.213e^-4	0.852	INTERGENIC
X	14391562	X_14391562_SNP [dm3] X_14497529_SNP [dm6]	G	A	1.226e^-4	0.852	DOWNSTREAM CG12540 INTERGENIC
3R	16991762	3R_16991762_SNP [dm3] 3R_21166040_SNP [dm6]	A	C	1.229e^-4	0.852	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
3R	16991774	3R_16991774_SNP [dm3] 3R_21166052_SNP [dm6]	C	T	1.229e^-4	0.852	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2R	5836789	2R_5836789_SNP [dm3] 2R_9949284_SNP [dm6]	A	G	1.241e^-4	0.852	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1713606	2L_1713606_SNP [dm3] 2L_1713606_SNP [dm6]	C	T	1.247e^-4	0.852	NON_SYNONYMOUS_CODING frtz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	3057813	X_3057813_SNP [dm3] X_3163780_SNP [dm6]	A	T	1.262e^-4	0.852	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	4317733	X_4317733_SNP [dm3] X_4423700_SNP [dm6]	A	G	1.267e^-4	0.852	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16428646	2L_16428646_INS [dm3] 2L_16428646_INS [dm6]	T	TGTGT	1.273e^-4	0.852	INTRON CG5888	TF binding site mE1_TFBS_HSA
2R	11557229	2R_11557229_SNP [dm3] 2R_15669724_SNP [dm6]	T	A	1.293e^-4	0.852	INTRON fus
X	11279184	X_11279184_SNP [dm3] X_11385151_SNP [dm6]	A	C	1.293e^-4	0.852	INTRON dlg1
2R	6486857	2R_6486857_SNP [dm3] 2R_10599352_SNP [dm6]	T	A	1.306e^-4	0.852	INTRON psq
3R	27189443	3R_27189443_SNP [dm3] 3R_31363721_SNP [dm6]	G	C	1.320e^-4	0.852	INTRON CG34347
3R	5100385	3R_5100385_SNP [dm3] 3R_9274663_SNP [dm6]	A	G	1.338e^-4	0.852	INTERGENIC
3R	12412386	3R_12412386_SNP [dm3] 3R_16586664_SNP [dm6]	C	A	1.349e^-4	0.852	INTERGENIC
3L	15382384	3L_15382384_SNP [dm3] 3L_15389284_SNP [dm6]	G	T	1.382e^-4	0.852	INTERGENIC
3R	18528407	3R_18528407_SNP [dm3] 3R_22702685_SNP [dm6]	C	T	1.382e^-4	0.852	UPSTREAM CCAP INTRON CG6972
3L	13326063	3L_13326063_SNP [dm3] 3L_13332963_SNP [dm6]	C	T	1.397e^-4	0.852	INTERGENIC
3L	2427637	3L_2427637_SNP [dm3] 3L_2427637_SNP [dm6]	A	G	1.400e^-4	0.852	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2427646	3L_2427646_SNP [dm3] 3L_2427646_SNP [dm6]	G	T	1.400e^-4	0.852	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4633793	X_4633793_SNP [dm3] X_4739760_SNP [dm6]	T	C	1.412e^-4	0.852	INTERGENIC
2R	4206222	2R_4206222_SNP [dm3] 2R_8318717_SNP [dm6]	A	C	1.418e^-4	0.852	INTERGENIC
3R	11125186	3R_11125186_SNP [dm3] 3R_15299464_SNP [dm6]	G	A	1.427e^-4	0.852	INTRON Tm1
3L	665020	3L_665020_SNP [dm3] 3L_665020_SNP [dm6]	G	T	1.429e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4794881	2R_4794881_SNP [dm3] 2R_8907376_SNP [dm6]	T	G	1.438e^-4	0.852	UPSTREAM CG30349 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	12897321	3L_12897321_DEL [dm3] 3L_12904221_DEL [dm6]	GCTT	G	1.440e^-4	0.852	UPSTREAM CG32117 INTERGENIC
2R	18514826	2R_18514826_DEL [dm3] 2R_22627321_DEL [dm6]	TT	T	1.445e^-4	0.852	INTRON CG33143
X	21432690	X_21432690_SNP [dm3] X_21561663_SNP [dm6]	T	C	1.452e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11352418	3L_11352418_SNP [dm3] 3L_11359318_SNP [dm6]	G	A	1.453e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12339506	2R_12339506_SNP [dm3] 2R_16452001_SNP [dm6]	A	G	1.467e^-4	0.852	INTERGENIC
3L	7146149	3L_7146149_SNP [dm3] 3L_7153049_SNP [dm6]	G	A	1.474e^-4	0.852	INTRON corn
3R	5196345	3R_5196345_SNP [dm3] 3R_9370623_SNP [dm6]	T	C	1.474e^-4	0.852	INTRON FER
2R	17187561	2R_17187561_SNP [dm3] 2R_21300056_SNP [dm6]	C	T	1.478e^-4	0.852	SYNONYMOUS_CODING CG42672 INTRON CG42672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3978394	X_3978394_SNP [dm3] X_4084361_SNP [dm6]	A	G	1.486e^-4	0.852	INTRON CG43689	TF binding site mE1_TFBS_chinmo
X	11279189	X_11279189_SNP [dm3] X_11385156_SNP [dm6]	T	A	1.486e^-4	0.852	INTRON dlg1
2R	12339407	2R_12339407_SNP [dm3] 2R_16451902_SNP [dm6]	T	C	1.493e^-4	0.852	INTERGENIC
2L	7881693	2L_7881693_DEL [dm3] 2L_7881693_DEL [dm6]	TAAACTGT	T	1.510e^-4	0.852	INTERGENIC
3L	3592362	3L_3592362_SNP [dm3] 3L_3592362_SNP [dm6]	A	G	1.515e^-4	0.852	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17187121	3R_17187121_SNP [dm3] 3R_21361399_SNP [dm6]	G	A	1.515e^-4	0.852	UTR_5_PRIME pre-mod_mdg4_-Z UTR_3_PRIME pre-mod_mdg4_-T DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	16340900	2R_16340900_SNP [dm3] 2R_20453395_SNP [dm6]	C	A	1.520e^-4	0.852	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11352473	3L_11352473_SNP [dm3] 3L_11359373_SNP [dm6]	T	G	1.526e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11352482	3L_11352482_SNP [dm3] 3L_11359382_SNP [dm6]	T	G	1.526e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3R	814331	3R_814331_SNP [dm3] 3R_4988609_SNP [dm6]	G	A	1.527e^-4	0.852	SYNONYMOUS_CODING CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	814334	3R_814334_SNP [dm3] 3R_4988612_SNP [dm6]	G	T	1.527e^-4	0.852	SYNONYMOUS_CODING CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5486831	X_5486831_SNP [dm3] X_5592798_SNP [dm6]	G	A	1.542e^-4	0.852	INTERGENIC
2L	13280432	2L_13280432_SNP [dm3] 2L_13280432_SNP [dm6]	G	A	1.549e^-4	0.852	SYNONYMOUS_CODING CG44085 INTRON CG44085
2R	5387078	2R_5387078_SNP [dm3] 2R_9499573_SNP [dm6]	T	C	1.559e^-4	0.852	INTRON Wnt2
3L	1297671	3L_1297671_SNP [dm3] 3L_1297671_SNP [dm6]	T	C	1.559e^-4	0.852	SYNONYMOUS_CODING Rabex-5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2902867	3R_2902867_SNP [dm3] 3R_7077145_SNP [dm6]	T	C	1.571e^-4	0.852	NON_SYNONYMOUS_CODING CG1943 DOWNSTREAM Ref1	TF binding site BDTNP1_TFBS_dl
2L	3239354	2L_3239354_SNP [dm3] 2L_3239354_SNP [dm6]	G	C	1.583e^-4	0.852	INTERGENIC
2R	12339416	2R_12339416_SNP [dm3] 2R_16451911_SNP [dm6]	T	C	1.601e^-4	0.852	INTERGENIC
2R	11545670	2R_11545670_SNP [dm3] 2R_15658165_SNP [dm6]	G	A	1.610e^-4	0.852	SYNONYMOUS_CODING fus DOWNSTREAM CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8674125	3L_8674125_SNP [dm3] 3L_8681025_SNP [dm6]	A	C	1.619e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10557604	3L_10557604_SNP [dm3] 3L_10564504_SNP [dm6]	A	G	1.622e^-4	0.852	INTRON A2bp1
2R	18873537	2R_18873537_SNP [dm3] 2R_22986014_SNP [dm6]	A	G	1.626e^-4	0.852	SYNONYMOUS_CODING CG9897 UPSTREAM mir-4939 & 1 other INTRON twi EXON CR42742
2L	6113255	2L_6113255_SNP [dm3] 2L_6113255_SNP [dm6]	T	A	1.627e^-4	0.852	INTRON stai
3R	13053326	3R_13053326_SNP [dm3] 3R_17227604_SNP [dm6]	C	A	1.627e^-4	0.852	INTERGENIC
3L	1105126	3L_1105126_SNP [dm3] 3L_1105126_SNP [dm6]	A	C	1.651e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15619327	2L_15619327_DEL [dm3] 2L_15619327_DEL [dm6]	ATAAAGGTTACT...	C	1.652e^-4	0.852	INTERGENIC
X	16381785	X_16381785_SNP [dm3] X_16487752_SNP [dm6]	G	A	1.659e^-4	0.852	INTRON para
2L	16409986	2L_16409986_SNP [dm3] 2L_16409986_SNP [dm6]	G	C	1.660e^-4	0.852	INTRON CG5888
2L	993084	2L_993084_SNP [dm3] 2L_993084_SNP [dm6]	G	A	1.666e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8081707	2L_8081707_SNP [dm3] 2L_8081707_SNP [dm6]	A	G	1.670e^-4	0.852	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10099487	X_10099487_SNP [dm3] X_10205454_SNP [dm6]	T	G	1.689e^-4	0.852	UTR_3_PRIME CG15309 DOWNSTREAM CR32690 INTRON CR44894
2R	20162172	2R_20162172_SNP [dm3] 2R_24274649_SNP [dm6]	A	C	1.699e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	2061569	2L_2061569_SNP [dm3] 2L_2061569_SNP [dm6]	T	C	1.709e^-4	0.852	INTRON dpr3
X	4927857	X_4927857_SNP [dm3] X_5033824_SNP [dm6]	A	G	1.715e^-4	0.852	INTRON CR44833
3R	23572460	3R_23572460_SNP [dm3] 3R_27746738_SNP [dm6]	C	G	1.719e^-4	0.852	NON_SYNONYMOUS_CODING Ets98B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4799796	2R_4799796_SNP [dm3] 2R_8912291_SNP [dm6]	C	T	1.752e^-4	0.852	INTRON Pgi	TF binding site mE1_TFBS_cad
2R	18245731	2R_18245731_SNP [dm3] 2R_22358226_SNP [dm6]	G	T	1.765e^-4	0.852	INTRON Liprin-gamma
2R	10858171	2R_10858171_SNP [dm3] 2R_14970666_SNP [dm6]	T	A	1.769e^-4	0.852	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	15383079	3L_15383079_SNP [dm3] 3L_15389979_SNP [dm6]	A	T	1.780e^-4	0.852	INTERGENIC
X	8262080	X_8262080_SNP [dm3] X_8368047_SNP [dm6]	T	G	1.785e^-4	0.852	UPSTREAM nAChRalpha3 INTERGENIC
3R	22060889	3R_22060889_SNP [dm3] 3R_26235167_SNP [dm6]	G	T	1.813e^-4	0.852	UPSTREAM CR42745 DOWNSTREAM CG12290 INTERGENIC
2R	16314635	2R_16314635_SNP [dm3] 2R_20427130_SNP [dm6]	T	C	1.822e^-4	0.852	INTRON CG12484
2R	16314935	2R_16314935_SNP [dm3] 2R_20427430_SNP [dm6]	A	C	1.822e^-4	0.852	INTRON CG12484
2L	11095532	2L_11095532_SNP [dm3] 2L_11095532_SNP [dm6]	A	G	1.834e^-4	0.852	UTR_3_PRIME Ge-1 DOWNSTREAM CG4705	TF binding site mE1_TFBS_HSA
3R	12412337	3R_12412337_SNP [dm3] 3R_16586615_SNP [dm6]	C	T	1.860e^-4	0.852	INTERGENIC
2L	1022519	2L_1022519_SNP [dm3] 2L_1022519_SNP [dm6]	C	G	1.869e^-4	0.852	INTRON IA-2
2R	20415643	2R_20415643_SNP [dm3] 2R_24528120_SNP [dm6]	T	G	1.869e^-4	0.852	NON_SYNONYMOUS_CODING Brca2
2R	4806192	2R_4806192_SNP [dm3] 2R_8918687_SNP [dm6]	A	C	1.879e^-4	0.852	NON_SYNONYMOUS_CODING CG34219 DOWNSTREAM CG8248 & 1 other
X	11690505	X_11690505_SNP [dm3] X_11796472_SNP [dm6]	A	G	1.895e^-4	0.852	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl
2L	12904090	2L_12904090_SNP [dm3] 2L_12904090_SNP [dm6]	A	G	1.902e^-4	0.852	INTERGENIC
2R	6854733	2R_6854733_SNP [dm3] 2R_10967228_SNP [dm6]	T	C	1.910e^-4	0.852	INTERGENIC
2L	16433515	2L_16433515_SNP [dm3] 2L_16433515_SNP [dm6]	A	T	1.920e^-4	0.852	INTRON CG5888
X	11661543	X_11661543_SNP [dm3] X_11767510_SNP [dm6]	T	C	1.920e^-4	0.852	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	11557248	2R_11557248_SNP [dm3] 2R_15669743_SNP [dm6]	C	T	1.930e^-4	0.852	INTRON fus
2L	12631544	2L_12631544_SNP [dm3] 2L_12631544_SNP [dm6]	C	T	1.934e^-4	0.852	INTRON Ref2
2R	11545607	2R_11545607_SNP [dm3] 2R_15658102_SNP [dm6]	C	T	1.968e^-4	0.852	SYNONYMOUS_CODING fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7376441	2R_7376441_SNP [dm3] 2R_11488936_SNP [dm6]	T	A	1.968e^-4	0.852	INTRON inv
3L	8574283	3L_8574283_SNP [dm3] 3L_8581183_SNP [dm6]	A	G	1.969e^-4	0.852	INTRON CG43078
3R	5196331	3R_5196331_SNP [dm3] 3R_9370609_SNP [dm6]	A	T	1.972e^-4	0.852	INTRON FER
2L	15610124	2L_15610124_SNP [dm3] 2L_15610124_SNP [dm6]	C	T	1.972e^-4	0.852	UPSTREAM CR44865 DOWNSTREAM CG15255 INTERGENIC
2L	12519716	2L_12519716_SNP [dm3] 2L_12519716_SNP [dm6]	C	A	1.990e^-4	0.852	INTRON bun	TF binding site mE1_TFBS_bab1
2L	12519739	2L_12519739_SNP [dm3] 2L_12519739_SNP [dm6]	T	A	1.990e^-4	0.852	INTRON bun	TF binding site mE1_TFBS_bab1
2L	12519743	2L_12519743_INS [dm3] 2L_12519743_INS [dm6]	A	ATGTAA	1.990e^-4	0.852	INTRON bun	TF binding site mE1_TFBS_bab1
2R	5842463	2R_5842463_SNP [dm3] 2R_9954958_SNP [dm6]	G	C	1.993e^-4	0.852	INTRON Mef2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5389374	2R_5389374_INS [dm3] 2R_9501869_INS [dm6]	G	GTATTAACTG	2.002e^-4	0.852	INTRON Wnt2	TF binding site mE1_TFBS_cad
3R	5725576	3R_5725576_SNP [dm3] 3R_9899854_SNP [dm6]	A	C	2.006e^-4	0.852	INTRON Glut4EF
X	19361885	X_19361885_SNP [dm3] X_19467852_SNP [dm6]	C	G	2.008e^-4	0.852	INTRON kek5
2R	12578340	2R_12578340_SNP [dm3] 2R_16690835_SNP [dm6]	C	T	2.013e^-4	0.852	UPSTREAM CG5210 INTRON CG30463
X	4453873	X_4453873_SNP [dm3] X_4559840_SNP [dm6]	G	C	2.036e^-4	0.852	SYNONYMOUS_CODING CG3546 INTRON CR32773	TF binding site mE1_TFBS_chinmo
2L	11095674	2L_11095674_SNP [dm3] 2L_11095674_SNP [dm6]	T	A	2.057e^-4	0.852	UTR_3_PRIME Ge-1 DOWNSTREAM CG4705	TF binding site mE1_TFBS_HSA
2L	10499607	2L_10499607_SNP [dm3] 2L_10499607_SNP [dm6]	C	A	2.064e^-4	0.852	INTRON Myo31DF
X	16801345	X_16801345_SNP [dm3] X_16907312_SNP [dm6]	C	G	2.065e^-4	0.852	INTRON CR44754
2R	15394027	2R_15394027_SNP [dm3] 2R_19506522_SNP [dm6]	G	C	2.066e^-4	0.852	UPSTREAM tRNA:H:56E INTERGENIC
3R	13459347	3R_13459347_SNP [dm3] 3R_17633625_SNP [dm6]	G	A	2.067e^-4	0.852	INTRON CG43175
X	13585751	X_13585751_INS [dm3] X_13691718_INS [dm6]	C	CCC	2.081e^-4	0.852	UPSTREAM NnaD INTRON CG9940
X	13585776	X_13585776_SNP [dm3] X_13691743_SNP [dm6]	C	T	2.081e^-4	0.852	UPSTREAM NnaD INTRON CG9940
2R	18434930	2R_18434930_SNP [dm3] 2R_22547425_SNP [dm6]	A	G	2.096e^-4	0.852	UPSTREAM px INTRON px
3R	694170	3R_694170_SNP [dm3] 3R_4868448_SNP [dm6]	T	C	2.118e^-4	0.852	INTRON opa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	791345	3R_791345_SNP [dm3] 3R_4965623_SNP [dm6]	T	C	2.118e^-4	0.852	SYNONYMOUS_CODING CG1124
3L	18612375	3L_18612375_SNP [dm3] 3L_18619275_SNP [dm6]	G	T	2.119e^-4	0.852	DOWNSTREAM tRNA:CR32200 INTRON not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22231823	3R_22231823_SNP [dm3] 3R_26406101_SNP [dm6]	T	C	2.121e^-4	0.852	INTERGENIC
3R	22231827	3R_22231827_SNP [dm3] 3R_26406105_SNP [dm6]	A	T	2.121e^-4	0.852	INTERGENIC
2L	14862897	2L_14862897_SNP [dm3] 2L_14862897_SNP [dm6]	A	G	2.133e^-4	0.852	INTERGENIC
3L	5777343	3L_5777343_SNP [dm3] 3L_5784243_SNP [dm6]	G	T	2.137e^-4	0.852	SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22071164	X_22071164_SNP [dm3] X_22669328_SNP [dm6]	C	G	2.142e^-4	0.852	INTRON CR44997	TF binding site mE1_TFBS_HSA
X	17968554	X_17968554_SNP [dm3] X_18074521_SNP [dm6]	A	G	2.159e^-4	0.852	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_chinmo
X	17909561	X_17909561_SNP [dm3] X_18015528_SNP [dm6]	T	A	2.168e^-4	0.852	UPSTREAM Sh INTRON Sh
2L	4211640	2L_4211640_SNP [dm3] 2L_4211640_SNP [dm6]	C	T	2.185e^-4	0.852	INTRON ft
3L	8653676	3L_8653676_SNP [dm3] 3L_8660576_SNP [dm6]	C	T	2.197e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13273762	2L_13273762_SNP [dm3] 2L_13273762_SNP [dm6]	T	C	2.205e^-4	0.852	SYNONYMOUS_CODING CG44085
2L	13273768	2L_13273768_SNP [dm3] 2L_13273768_SNP [dm6]	G	C	2.205e^-4	0.852	SYNONYMOUS_CODING CG44085
2L	14146549	2L_14146549_DEL [dm3] 2L_14146549_DEL [dm6]	GCTTTGGGGGTTGGG...	G	2.205e^-4	0.852	INTRON CG17341
3R	16744335	3R_16744335_SNP [dm3] 3R_20918613_SNP [dm6]	A	T	2.214e^-4	0.852	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
3R	12686288	3R_12686288_SNP [dm3] 3R_16860566_SNP [dm6]	T	C	2.224e^-4	0.852	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18493419	X_18493419_SNP [dm3] X_18599386_SNP [dm6]	A	G	2.235e^-4	0.852	INTERGENIC
2L	13280471	2L_13280471_SNP [dm3] 2L_13280471_SNP [dm6]	C	T	2.236e^-4	0.852	SYNONYMOUS_CODING CG44085 INTRON CG44085
X	5486804	X_5486804_DEL [dm3] X_5592771_DEL [dm6]	TTAAAACAACTAACACAACC...	T	2.240e^-4	0.852	INTERGENIC
2L	16433535	2L_16433535_SNP [dm3] 2L_16433535_SNP [dm6]	A	C	2.254e^-4	0.852	INTRON CG5888
X	5961714	X_5961714_SNP [dm3] X_6067681_SNP [dm6]	G	C	2.259e^-4	0.852	UPSTREAM CG5928 INTERGENIC
X	18497461	X_18497461_SNP [dm3] X_18603428_SNP [dm6]	T	G	2.260e^-4	0.852	INTERGENIC
2L	10411141	2L_10411141_SNP [dm3] 2L_10411141_SNP [dm6]	C	G	2.260e^-4	0.852	SYNONYMOUS_CODING CG5355 DOWNSTREAM RpS27A
2R	5161544	2R_5161544_SNP [dm3] 2R_9274039_SNP [dm6]	T	G	2.266e^-4	0.852	INTRON Pkn
2R	5161824	2R_5161824_SNP [dm3] 2R_9274319_SNP [dm6]	A	G	2.266e^-4	0.852	INTRON Pkn	TF binding site mE1_TFBS_Trl
3R	15005380	3R_15005380_SNP [dm3] 3R_19179658_SNP [dm6]	A	C	2.269e^-4	0.852	INTRON CG5555	TF binding site mE1_TFBS_sens
3R	3480589	3R_3480589_SNP [dm3] 3R_7654867_SNP [dm6]	C	T	2.269e^-4	0.852	INTERGENIC
2R	16146850	2R_16146850_SNP [dm3] 2R_20259345_SNP [dm6]	C	A	2.283e^-4	0.852	NON_SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25161706	3R_25161706_SNP [dm3] 3R_29335984_SNP [dm6]	G	T	2.283e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15692017	2R_15692017_SNP [dm3] 2R_19804512_SNP [dm6]	C	T	2.294e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	3443564	3R_3443564_SNP [dm3] 3R_7617842_SNP [dm6]	A	G	2.303e^-4	0.852	INTRON CG34127
3L	5667251	3L_5667251_SNP [dm3] 3L_5674151_SNP [dm6]	T	A	2.308e^-4	0.852	INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5394477	2R_5394477_SNP [dm3] 2R_9506972_SNP [dm6]	T	C	2.310e^-4	0.852	INTRON brp
2R	17896520	2R_17896520_SNP [dm3] 2R_22009015_SNP [dm6]	G	C	2.316e^-4	0.852	INTRON CG34370
3R	18528406	3R_18528406_SNP [dm3] 3R_22702684_SNP [dm6]	A	G	2.317e^-4	0.852	UPSTREAM CCAP INTRON CG6972
2L	1005903	2L_1005903_SNP [dm3] 2L_1005903_SNP [dm6]	G	C	2.319e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_bab1
X	8347860	X_8347860_DEL [dm3] X_8453827_DEL [dm6]	GAA	CT	2.322e^-4	0.852	INTRON org-1
2L	14758410	2L_14758410_SNP [dm3] 2L_14758410_SNP [dm6]	C	T	2.338e^-4	0.852	INTERGENIC
3R	19447588	3R_19447588_SNP [dm3] 3R_23621866_SNP [dm6]	A	T	2.346e^-4	0.852	INTRON CG31145
3R	19805832	3R_19805832_SNP [dm3] 3R_23980110_SNP [dm6]	G	A	2.346e^-4	0.852	INTRON CG31140
3R	12581868	3R_12581868_SNP [dm3] 3R_16756146_SNP [dm6]	G	A	2.354e^-4	0.852	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12589603	3R_12589603_SNP [dm3] 3R_16763881_SNP [dm6]	C	T	2.354e^-4	0.852	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	10088070	X_10088070_SNP [dm3] X_10194037_SNP [dm6]	T	A	2.355e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
3L	14320585	3L_14320585_SNP [dm3] 3L_14327485_SNP [dm6]	C	A	2.375e^-4	0.852	INTRON fz
2L	16409693	2L_16409693_SNP [dm3] 2L_16409693_SNP [dm6]	T	C	2.387e^-4	0.852	INTRON CG5888
3R	7749508	3R_7749508_SNP [dm3] 3R_11923786_SNP [dm6]	A	G	2.390e^-4	0.852	INTRON Cad87A
3L	1297485	3L_1297485_SNP [dm3] 3L_1297485_SNP [dm6]	G	A	2.407e^-4	0.852	SYNONYMOUS_CODING Rabex-5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13822200	2R_13822200_SNP [dm3] 2R_17934695_SNP [dm6]	C	G	2.414e^-4	0.852	INTERGENIC
2L	4266328	2L_4266328_SNP [dm3] 2L_4266328_SNP [dm6]	T	A	2.417e^-4	0.852	INTERGENIC
3R	5196323	3R_5196323_SNP [dm3] 3R_9370601_SNP [dm6]	T	G	2.417e^-4	0.852	INTRON FER
2R	11129133	2R_11129133_SNP [dm3] 2R_15241628_SNP [dm6]	C	G	2.418e^-4	0.852	UPSTREAM Fs INTERGENIC
2R	14895333	2R_14895333_SNP [dm3] 2R_19007828_SNP [dm6]	T	C	2.418e^-4	0.852	INTRON tn
2R	5386302	2R_5386302_SNP [dm3] 2R_9498797_SNP [dm6]	A	C	2.418e^-4	0.852	INTRON Wnt2
3L	15559512	3L_15559512_SNP [dm3] 3L_15566412_SNP [dm6]	A	G	2.418e^-4	0.852	UTR_5_PRIME CG6498 DOWNSTREAM CG7427 INTRON CG6498	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17784730	3L_17784730_SNP [dm3] 3L_17791630_SNP [dm6]	T	C	2.418e^-4	0.852	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3L	17788318	3L_17788318_SNP [dm3] 3L_17795218_SNP [dm6]	C	T	2.418e^-4	0.852	SYNONYMOUS_CODING CG42816
3L	17788580	3L_17788580_SNP [dm3] 3L_17795480_SNP [dm6]	A	T	2.418e^-4	0.852	INTRON CG42816
3L	17788602	3L_17788602_SNP [dm3] 3L_17795502_SNP [dm6]	A	G	2.418e^-4	0.852	INTRON CG42816
3L	18201985	3L_18201985_SNP [dm3] 3L_18208885_SNP [dm6]	T	A	2.418e^-4	0.852	INTERGENIC
3L	6585309	3L_6585309_SNP [dm3] 3L_6592209_SNP [dm6]	T	C	2.418e^-4	0.852	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
3R	22008067	3R_22008067_SNP [dm3] 3R_26182345_SNP [dm6]	T	C	2.418e^-4	0.852	INTRON CG31323
X	18184822	X_18184822_SNP [dm3] X_18290789_SNP [dm6]	A	G	2.418e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18185858	X_18185858_SNP [dm3] X_18291825_SNP [dm6]	G	A	2.418e^-4	0.852	UPSTREAM CR15061 INTERGENIC
X	4633693	X_4633693_SNP [dm3] X_4739660_SNP [dm6]	G	C	2.418e^-4	0.852	INTERGENIC
2R	5835529	2R_5835529_SNP [dm3] 2R_9948024_SNP [dm6]	C	T	2.430e^-4	0.852	INTRON Mef2
2R	5835570	2R_5835570_SNP [dm3] 2R_9948065_SNP [dm6]	G	A	2.430e^-4	0.852	INTRON Mef2
2R	5516197	2R_5516197_SNP [dm3] 2R_9628692_SNP [dm6]	A	T	2.433e^-4	0.852	INTRON Mmp2	TF binding site mE1_TFBS_inv
2R	17275301	2R_17275301_SNP [dm3] 2R_21387796_SNP [dm6]	C	G	2.438e^-4	0.852	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
3R	5888181	3R_5888181_SNP [dm3] 3R_10062459_SNP [dm6]	C	G	2.447e^-4	0.852	UPSTREAM CG33630 & 1 other DOWNSTREAM CR33629 INTERGENIC
X	2851436	X_2851436_SNP [dm3] X_2957403_SNP [dm6]	G	T	2.452e^-4	0.852	INTRON kirre & 1 other	TF binding site mE1_TFBS_cad
3R	7774132	3R_7774132_SNP [dm3] 3R_11948410_SNP [dm6]	A	G	2.469e^-4	0.852	INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18161594	2R_18161594_SNP [dm3] 2R_22274089_SNP [dm6]	C	T	2.473e^-4	0.852	INTRON dve	TF binding site mE1_TFBS_chinmo
2L	20556798	2L_20556798_SNP [dm3] 2L_20556798_SNP [dm6]	T	C	2.475e^-4	0.852	INTERGENIC
2R	6778427	2R_6778427_SNP [dm3] 2R_10890922_SNP [dm6]	A	T	2.485e^-4	0.852	INTRON CG30020
3R	18597451	3R_18597451_SNP [dm3] 3R_22771729_SNP [dm6]	A	C	2.495e^-4	0.852	UPSTREAM CG43094 INTRON Usp12-46 & 2 others
2R	1617473	2R_1617473_SNP [dm3] 2R_5729968_SNP [dm6]	G	T	2.510e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	6551974	3L_6551974_SNP [dm3] 3L_6558874_SNP [dm6]	T	C	2.510e^-4	0.852	INTRON CG18769
3L	12897545	3L_12897545_SNP [dm3] 3L_12904445_SNP [dm6]	G	T	2.519e^-4	0.852	UPSTREAM CG32117 INTERGENIC
3L	1297947	3L_1297947_SNP [dm3] 3L_1297947_SNP [dm6]	G	A	2.521e^-4	0.852	SYNONYMOUS_CODING Rabex-5 UPSTREAM scf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11352402	3L_11352402_SNP [dm3] 3L_11359302_SNP [dm6]	A	G	2.530e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
X	12207909	X_12207909_SNP [dm3] X_12313876_SNP [dm6]	G	A	2.547e^-4	0.852	INTRON Ten-a
2L	1554948	2L_1554948_SNP [dm3] 2L_1554948_SNP [dm6]	C	T	2.550e^-4	0.852	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3435299	2L_3435299_SNP [dm3] 2L_3435299_SNP [dm6]	T	A	2.550e^-4	0.852	INTERGENIC
3R	10503327	3R_10503327_SNP [dm3] 3R_14677605_SNP [dm6]	G	A	2.565e^-4	0.852	INTRON Meltrin
3R	25266909	3R_25266909_SNP [dm3] 3R_29441187_SNP [dm6]	C	T	2.565e^-4	0.852	INTRON Ptp99A
3R	18972816	3R_18972816_SNP [dm3] 3R_23147094_SNP [dm6]	A	C	2.567e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7881716	2L_7881716_SNP [dm3] 2L_7881716_SNP [dm6]	A	G	2.569e^-4	0.852	INTERGENIC
3L	9410594	3L_9410594_SNP [dm3] 3L_9417494_SNP [dm6]	A	T	2.570e^-4	0.852	UPSTREAM CG3982 INTRON CG3967
3R	21897001	3R_21897001_SNP [dm3] 3R_26071279_SNP [dm6]	T	A	2.578e^-4	0.852	INTRON CR44950
3R	21897008	3R_21897008_SNP [dm3] 3R_26071286_SNP [dm6]	G	A	2.578e^-4	0.852	INTRON CR44950
3R	21897013	3R_21897013_SNP [dm3] 3R_26071291_SNP [dm6]	A	T	2.578e^-4	0.852	INTRON CR44950
3L	5228437	3L_5228437_SNP [dm3] 3L_5235337_SNP [dm6]	G	C	2.585e^-4	0.852	SYNONYMOUS_CODING CG4669 INTRON shep	TF binding site mE1_TFBS_sens
3R	12589087	3R_12589087_DEL [dm3] 3R_16763365_DEL [dm6]	TT	T	2.603e^-4	0.852	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13919987	2R_13919987_SNP [dm3] 2R_18032482_SNP [dm6]	A	G	2.607e^-4	0.852	INTERGENIC
3L	2026636	3L_2026636_DEL [dm3] 3L_2026636_DEL [dm6]	AGGA	A	2.609e^-4	0.852	UPSTREAM CG34259 INTERGENIC
2R	8787556	2R_8787556_SNP [dm3] 2R_12900051_SNP [dm6]	G	A	2.620e^-4	0.852	DOWNSTREAM vg INTERGENIC
2R	8787908	2R_8787908_SNP [dm3] 2R_12900403_SNP [dm6]	C	T	2.620e^-4	0.852	INTERGENIC
X	5761808	X_5761808_SNP [dm3] X_5867775_SNP [dm6]	T	G	2.628e^-4	0.852	INTERGENIC
3L	7741373	3L_7741373_SNP [dm3] 3L_7748273_SNP [dm6]	C	G	2.633e^-4	0.852	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10828195	2L_10828195_SNP [dm3] 2L_10828195_SNP [dm6]	C	T	2.639e^-4	0.852	INTRON Nos
3L	9630036	3L_9630036_SNP [dm3] 3L_9636936_SNP [dm6]	G	A	2.655e^-4	0.852	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	726063	3L_726063_SNP [dm3] 3L_726063_SNP [dm6]	G	T	2.658e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	7731259	3R_7731259_SNP [dm3] 3R_11905537_SNP [dm6]	G	T	2.677e^-4	0.852	INTRON Cad87A
2L	7705258	2L_7705258_DEL [dm3] 2L_7705258_DEL [dm6]	CGCCGGCTTGAGGTT...	AA	2.682e^-4	0.852	INTRON Tep3
2L	13116411	2L_13116411_SNP [dm3] 2L_13116411_SNP [dm6]	T	G	2.689e^-4	0.852	INTERGENIC
X	9723089	X_9723089_SNP [dm3] X_9829056_SNP [dm6]	A	G	2.694e^-4	0.852	INTRON CG32698
X	5761798	X_5761798_INS [dm3] X_5867765_INS [dm6]	C	CC	2.708e^-4	0.852	INTERGENIC
2L	3329829	2L_3329829_SNP [dm3] 2L_3329829_SNP [dm6]	T	C	2.750e^-4	0.852	DOWNSTREAM CG33282 INTERGENIC
2R	18518923	2R_18518923_SNP [dm3] 2R_22631418_SNP [dm6]	T	C	2.750e^-4	0.852	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16744242	3R_16744242_SNP [dm3] 3R_20918520_SNP [dm6]	C	G	2.775e^-4	0.852	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
3R	19463276	3R_19463276_SNP [dm3] 3R_23637554_SNP [dm6]	C	T	2.787e^-4	0.852	INTRON CG31145
2L	15619344	2L_15619344_SNP [dm3] 2L_15619344_SNP [dm6]	T	G	2.788e^-4	0.852	INTERGENIC
X	18148124	X_18148124_SNP [dm3] X_18254091_SNP [dm6]	G	C	2.791e^-4	0.852	INTERGENIC
X	18149572	X_18149572_SNP [dm3] X_18255539_SNP [dm6]	G	A	2.791e^-4	0.852	INTERGENIC
3L	11224070	3L_11224070_SNP [dm3] 3L_11230970_SNP [dm6]	A	T	2.801e^-4	0.852	DOWNSTREAM CR45405 & 1 other INTERGENIC
2R	13504155	2R_13504155_SNP [dm3] 2R_17616650_SNP [dm6]	C	T	2.802e^-4	0.852	UTR_3_PRIME CG44403 UPSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5993159	3L_5993159_DEL [dm3] 3L_6000059_DEL [dm6]	CA	C	2.809e^-4	0.852	INTRON PVRAP
2L	15610551	2L_15610551_SNP [dm3] 2L_15610551_SNP [dm6]	C	T	2.811e^-4	0.852	UTR_3_PRIME CG15255 DOWNSTREAM CG15255 EXON CR44865
X	18728558	X_18728558_SNP [dm3] X_18834525_SNP [dm6]	C	T	2.812e^-4	0.852	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
3R	9962850	3R_9962850_SNP [dm3] 3R_14137128_SNP [dm6]	A	G	2.820e^-4	0.852	INTERGENIC
2L	5597829	2L_5597829_SNP [dm3] 2L_5597829_SNP [dm6]	G	T	2.827e^-4	0.852	NON_SYNONYMOUS_CODING CG18266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6468246	2R_6468246_SNP [dm3] 2R_10580741_SNP [dm6]	G	C	2.827e^-4	0.852	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15701258	3L_15701258_SNP [dm3] 3L_15708158_SNP [dm6]	G	A	2.827e^-4	0.852	INTERGENIC
2L	1162233	2L_1162233_SNP [dm3] 2L_1162233_SNP [dm6]	C	T	2.831e^-4	0.852	INTRON CG5080	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	15696982	3L_15696982_SNP [dm3] 3L_15703882_SNP [dm6]	G	A	2.848e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	9817475	X_9817475_DEL [dm3] X_9923442_DEL [dm6]	TTGTATGCGCTGAACTTCAG...	T	2.853e^-4	0.852	INTERGENIC
2L	1207541	2L_1207541_SNP [dm3] 2L_1207541_SNP [dm6]	G	C	2.872e^-4	0.852	INTERGENIC
2R	18868989	2R_18868989_SNP [dm3] 2R_22981466_SNP [dm6]	T	C	2.887e^-4	0.852	INTERGENIC
3L	4975247	3L_4975247_SNP [dm3] 3L_4975247_SNP [dm6]	C	T	2.891e^-4	0.852	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	22694808	3L_22694808_SNP [dm3] 3L_22701708_SNP [dm6]	T	G	2.893e^-4	0.852	INTERGENIC
3L	3740393	3L_3740393_SNP [dm3] 3L_3740393_SNP [dm6]	C	T	2.894e^-4	0.852	INTRON CG32264
2R	13633716	2R_13633716_SNP [dm3] 2R_17746211_SNP [dm6]	T	C	2.894e^-4	0.852	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2R	13633749	2R_13633749_SNP [dm3] 2R_17746244_SNP [dm6]	G	A	2.894e^-4	0.852	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2R	13633761	2R_13633761_SNP [dm3] 2R_17746256_SNP [dm6]	A	T	2.894e^-4	0.852	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
3R	25346528	3R_25346528_SNP [dm3] 3R_29520806_SNP [dm6]	A	G	2.898e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6140874	2L_6140874_SNP [dm3] 2L_6140874_SNP [dm6]	A	G	2.904e^-4	0.852	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1302134	3L_1302134_SNP [dm3] 3L_1302134_SNP [dm6]	A	G	2.908e^-4	0.852	SYNONYMOUS_CODING Rac1 UPSTREAM CG9149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9425444	2R_9425444_SNP [dm3] 2R_13537939_SNP [dm6]	G	A	2.910e^-4	0.852	SYNONYMOUS_CODING CG6145	TF binding site mE1_TFBS_cad
2R	5161460	2R_5161460_SNP [dm3] 2R_9273955_SNP [dm6]	A	C	2.916e^-4	0.852	INTRON Pkn	TF binding site BDTNP1_TFBS_twi
3L	16003927	3L_16003927_SNP [dm3] 3L_16010827_SNP [dm6]	C	G	2.923e^-4	0.852	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da
3R	9709329	3R_9709329_SNP [dm3] 3R_13883607_SNP [dm6]	A	C	2.930e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14491778	X_14491778_SNP [dm3] X_14597745_SNP [dm6]	C	T	2.931e^-4	0.852	INTRON CG9413
3R	24814681	3R_24814681_SNP [dm3] 3R_28988959_SNP [dm6]	A	C	2.960e^-4	0.852	INTERGENIC
2L	18472768	2L_18472768_SNP [dm3] 2L_18472768_SNP [dm6]	C	T	2.964e^-4	0.852	DOWNSTREAM CG10283 & 2 others EXON let-7-C
2R	11847935	2R_11847935_SNP [dm3] 2R_15960430_SNP [dm6]	A	G	2.974e^-4	0.852	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8039346	3L_8039346_SNP [dm3] 3L_8046246_SNP [dm6]	G	A	2.974e^-4	0.852	INTRON nmo
3R	25520206	3R_25520206_SNP [dm3] 3R_29694484_SNP [dm6]	T	C	2.974e^-4	0.852	INTRON dmrt99B
3R	9367891	3R_9367891_SNP [dm3] 3R_13542169_SNP [dm6]	T	C	2.974e^-4	0.852	INTERGENIC
3R	19326587	3R_19326587_INS [dm3] 3R_23500865_INS [dm6]	T	TT	2.983e^-4	0.852	INTERGENIC
3R	21695051	3R_21695051_SNP [dm3] 3R_25869329_SNP [dm6]	C	T	2.983e^-4	0.852	INTRON CG5890
2L	11195167	2L_11195167_SNP [dm3] 2L_11195167_SNP [dm6]	T	C	2.987e^-4	0.852	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	12430393	2L_12430393_SNP [dm3] 2L_12430393_SNP [dm6]	T	C	2.991e^-4	0.852	SYNONYMOUS_CODING CG5435 DOWNSTREAM CG6388 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7040072	2L_7040072_SNP [dm3] 2L_7040072_SNP [dm6]	G	A	3.012e^-4	0.852	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4018841	3L_4018841_SNP [dm3] 3L_4018841_SNP [dm6]	A	T	3.014e^-4	0.852	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12035043	2L_12035043_SNP [dm3] 2L_12035043_SNP [dm6]	G	A	3.031e^-4	0.852	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12400051	2R_12400051_SNP [dm3] 2R_16512546_SNP [dm6]	C	A	3.032e^-4	0.852	INTRON Sema-2a
2L	4256660	2L_4256660_DEL [dm3] 2L_4256660_DEL [dm6]	GACATAACAATGGTATG...	G	3.035e^-4	0.852	UPSTREAM CR45294 & 2 others DOWNSTREAM CR45296 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	19346789	3R_19346789_SNP [dm3] 3R_23521067_SNP [dm6]	T	C	3.040e^-4	0.852	NON_SYNONYMOUS_CODING CG10177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17366003	X_17366003_INS [dm3] X_17471970_INS [dm6]	G	GTG	3.043e^-4	0.852	INTRON CG43658
2R	18873263	2R_18873263_SNP [dm3] 2R_22985740_SNP [dm6]	T	A	3.063e^-4	0.852	SYNONYMOUS_CODING CG9897 UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other INTRON twi EXON CR42742
3L	3592375	3L_3592375_SNP [dm3] 3L_3592375_SNP [dm6]	G	C	3.071e^-4	0.852	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5647834	X_5647834_SNP [dm3] X_5753801_SNP [dm6]	C	G	3.074e^-4	0.852	UTR_3_PRIME lin-52 & 1 other DOWNSTREAM lin-52	TF binding site mE1_TFBS_sens
3L	2023606	3L_2023606_SNP [dm3] 3L_2023606_SNP [dm6]	A	G	3.082e^-4	0.852	UPSTREAM CG42356 INTERGENIC
3R	9962811	3R_9962811_SNP [dm3] 3R_14137089_SNP [dm6]	T	A	3.082e^-4	0.852	INTERGENIC
2L	16433527	2L_16433527_SNP [dm3] 2L_16433527_SNP [dm6]	C	A	3.096e^-4	0.852	INTRON CG5888
2L	16433529	2L_16433529_SNP [dm3] 2L_16433529_SNP [dm6]	A	T	3.096e^-4	0.852	INTRON CG5888
3R	7731258	3R_7731258_SNP [dm3] 3R_11905536_SNP [dm6]	T	A	3.109e^-4	0.852	INTRON Cad87A
3R	7731267	3R_7731267_SNP [dm3] 3R_11905545_SNP [dm6]	T	G	3.109e^-4	0.852	INTRON Cad87A
3R	7731500	3R_7731500_SNP [dm3] 3R_11905778_SNP [dm6]	C	A	3.109e^-4	0.852	INTRON Cad87A
3R	19411524	3R_19411524_SNP [dm3] 3R_23585802_SNP [dm6]	G	A	3.112e^-4	0.852	INTERGENIC
2L	11198421	2L_11198421_SNP [dm3] 2L_11198421_SNP [dm6]	C	A	3.114e^-4	0.852	INTRON Ca-beta
2L	11198422	2L_11198422_SNP [dm3] 2L_11198422_SNP [dm6]	A	T	3.114e^-4	0.852	INTRON Ca-beta
2L	11198427	2L_11198427_SNP [dm3] 2L_11198427_SNP [dm6]	C	G	3.114e^-4	0.852	INTRON Ca-beta
2L	11198457	2L_11198457_SNP [dm3] 2L_11198457_SNP [dm6]	C	T	3.114e^-4	0.852	INTRON Ca-beta
3L	13903461	3L_13903461_SNP [dm3] 3L_13910361_SNP [dm6]	C	T	3.131e^-4	0.852	INTRON Rgl
3L	6168551	3L_6168551_SNP [dm3] 3L_6175451_SNP [dm6]	C	T	3.139e^-4	0.852	SYNONYMOUS_CODING CG7376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6525730	X_6525730_SNP [dm3] X_6631697_SNP [dm6]	C	T	3.191e^-4	0.852	INTRON pigs	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	6525734	X_6525734_SNP [dm3] X_6631701_SNP [dm6]	T	G	3.191e^-4	0.852	INTRON pigs	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7881704	2L_7881704_SNP [dm3] 2L_7881704_SNP [dm6]	T	C	3.208e^-4	0.852	INTERGENIC
2R	17602494	2R_17602494_SNP [dm3] 2R_21714989_SNP [dm6]	G	A	3.216e^-4	0.852	INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	22047702	2L_22047702_SNP [dm3] 2L_22047702_SNP [dm6]	G	T	3.225e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	4419403	3L_4419403_SNP [dm3] 3L_4419403_SNP [dm6]	T	G	3.238e^-4	0.852	INTRON DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5257871	X_5257871_SNP [dm3] X_5363838_SNP [dm6]	G	T	3.243e^-4	0.852	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23747122	3R_23747122_SNP [dm3] 3R_27921400_SNP [dm6]	T	G	3.244e^-4	0.852	SYNONYMOUS_CODING BCAS2 UPSTREAM CG12259	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	9818307	X_9818307_DEL [dm3] X_9924274_DEL [dm6]	AA	T	3.249e^-4	0.852	INTERGENIC
2L	7198490	2L_7198490_SNP [dm3] 2L_7198490_SNP [dm6]	C	T	3.253e^-4	0.852	INTRON CG4502
X	12953472	X_12953472_SNP [dm3] X_13059439_SNP [dm6]	T	C	3.260e^-4	0.852	INTRON rad
2L	10184657	2L_10184657_SNP [dm3] 2L_10184657_SNP [dm6]	G	A	3.261e^-4	0.852	NON_SYNONYMOUS_CODING Sur	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	1297479	3L_1297479_SNP [dm3] 3L_1297479_SNP [dm6]	C	T	3.271e^-4	0.852	SYNONYMOUS_CODING Rabex-5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8214895	3L_8214895_SNP [dm3] 3L_8221795_SNP [dm6]	C	G	3.280e^-4	0.852	UPSTREAM CG13678 INTERGENIC
2L	13280462	2L_13280462_SNP [dm3] 2L_13280462_SNP [dm6]	C	A	3.287e^-4	0.852	SYNONYMOUS_CODING CG44085 INTRON CG44085
3L	11352475	3L_11352475_SNP [dm3] 3L_11359375_SNP [dm6]	G	T	3.290e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2023543	3L_2023543_DEL [dm3] 3L_2023543_DEL [dm6]	TAGTTCAT	T	3.297e^-4	0.852	UPSTREAM CG42356 INTERGENIC
3L	2023554	3L_2023554_SNP [dm3] 3L_2023554_SNP [dm6]	T	A	3.297e^-4	0.852	UPSTREAM CG42356 INTERGENIC
X	15451136	X_15451136_SNP [dm3] X_15557103_SNP [dm6]	C	A	3.303e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4632060	X_4632060_SNP [dm3] X_4738027_SNP [dm6]	T	G	3.305e^-4	0.852	INTERGENIC
3L	4911866	3L_4911866_SNP [dm3] 3L_4911866_SNP [dm6]	A	T	3.310e^-4	0.852	INTRON Rh50
X	18493425	X_18493425_SNP [dm3] X_18599392_SNP [dm6]	T	G	3.312e^-4	0.852	INTERGENIC
2L	6837485	2L_6837485_SNP [dm3] 2L_6837485_SNP [dm6]	T	A	3.317e^-4	0.852	INTRON sens-2
2L	15482763	2L_15482763_SNP [dm3] 2L_15482763_SNP [dm6]	A	G	3.324e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2872020	2R_2872020_INS [dm3] 2R_6984515_INS [dm6]	T	TAATTTTTTAGT...	3.347e^-4	0.852	INTRON vimar & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	20759666	X_20759666_SNP [dm3] X_20888639_SNP [dm6]	C	T	3.351e^-4	0.852	INTRON shakB
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	3.355e^-4	0.852	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	5154499	3R_5154499_SNP [dm3] 3R_9328777_SNP [dm6]	G	T	3.368e^-4	0.852	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	7536774	2L_7536774_SNP [dm3] 2L_7536774_SNP [dm6]	G	A	3.375e^-4	0.852	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17031854	2R_17031854_SNP [dm3] 2R_21144349_SNP [dm6]	C	T	3.405e^-4	0.852	SYNONYMOUS_CODING Xbp1	TF binding site mE1_TFBS_chinmo
3L	5927223	3L_5927223_SNP [dm3] 3L_5934123_SNP [dm6]	T	C	3.414e^-4	0.852	SYNONYMOUS_CODING CG33993
3R	26050533	3R_26050533_SNP [dm3] 3R_30224811_SNP [dm6]	A	T	3.416e^-4	0.852	INTERGENIC
3R	19341304	3R_19341304_SNP [dm3] 3R_23515582_SNP [dm6]	T	G	3.423e^-4	0.852	INTRON Irk2
2R	18431655	2R_18431655_SNP [dm3] 2R_22544150_SNP [dm6]	A	T	3.426e^-4	0.852	INTRON px
3R	19429416	3R_19429416_SNP [dm3] 3R_23603694_SNP [dm6]	G	A	3.431e^-4	0.852	SYNONYMOUS_CODING CG10184	TF binding site mE1_TFBS_chinmo
2R	8502858	2R_8502858_SNP [dm3] 2R_12615353_SNP [dm6]	T	A	3.440e^-4	0.852	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
3R	16601254	3R_16601254_SNP [dm3] 3R_20775532_SNP [dm6]	G	T	3.446e^-4	0.852	INTRON Syp
2L	3998926	2L_3998926_SNP [dm3] 2L_3998926_SNP [dm6]	C	A	3.447e^-4	0.852	INTERGENIC
3L	15835241	3L_15835241_SNP [dm3] 3L_15842141_SNP [dm6]	A	G	3.450e^-4	0.852	INTRON CG32150
2R	11385994	2R_11385994_SNP [dm3] 2R_15498489_SNP [dm6]	G	A	3.451e^-4	0.852	INTERGENIC
X	10924429	X_10924429_SNP [dm3] X_11030396_SNP [dm6]	T	A	3.460e^-4	0.852	INTRON CG42339
X	4134081	X_4134081_SNP [dm3] X_4240048_SNP [dm6]	C	G	3.471e^-4	0.852	INTERGENIC
X	3850022	X_3850022_SNP [dm3] X_3955989_SNP [dm6]	A	G	3.476e^-4	0.852	DOWNSTREAM Vap-33A INTRON lva	TF binding site mE1_TFBS_cad
2L	8379853	2L_8379853_SNP [dm3] 2L_8379853_SNP [dm6]	C	G	3.478e^-4	0.852	NON_SYNONYMOUS_CODING Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8914357	X_8914357_SNP [dm3] X_9020324_SNP [dm6]	A	T	3.481e^-4	0.852	INTRON CR43836 & 1 other
3L	1230085	3L_1230085_SNP [dm3] 3L_1230085_SNP [dm6]	T	A	3.491e^-4	0.852	SPLICE_SITE_REGION mwh INTRON mwh	TF binding site mE1_TFBS_chinmo
2R	4089011	2R_4089011_SNP [dm3] 2R_8201506_SNP [dm6]	T	C	3.491e^-4	0.852	INTRON LRP1
X	17909591	X_17909591_SNP [dm3] X_18015558_SNP [dm6]	A	G	3.491e^-4	0.852	UPSTREAM Sh INTRON Sh
X	17909607	X_17909607_SNP [dm3] X_18015574_SNP [dm6]	T	C	3.491e^-4	0.852	UPSTREAM Sh INTRON Sh
3L	13892014	3L_13892014_SNP [dm3] 3L_13898914_SNP [dm6]	A	G	3.496e^-4	0.852	INTRON dysc
2R	16936213	2R_16936213_SNP [dm3] 2R_21048708_SNP [dm6]	G	A	3.502e^-4	0.852	DOWNSTREAM shg INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	21250559	X_21250559_DEL [dm3] X_21379532_DEL [dm6]	ACAA	A	3.540e^-4	0.852	INTRON slgA	TF binding site BDTNP1_TFBS_dl
3R	25362602	3R_25362602_SNP [dm3] 3R_29536880_SNP [dm6]	C	T	3.551e^-4	0.852	INTERGENIC
2L	8376324	2L_8376324_SNP [dm3] 2L_8376324_SNP [dm6]	C	T	3.554e^-4	0.852	SYNONYMOUS_CODING CG13390 UPSTREAM CG17294 DOWNSTREAM Wdr82	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	8376522	2L_8376522_SNP [dm3] 2L_8376522_SNP [dm6]	G	T	3.554e^-4	0.852	SYNONYMOUS_CODING CG13390 UPSTREAM CG17294 DOWNSTREAM Wdr82	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6228018	3L_6228018_SNP [dm3] 3L_6234918_SNP [dm6]	A	G	3.556e^-4	0.852	SYNONYMOUS_CODING CG10226 UPSTREAM CG42714	TF binding site BDTNP1_TFBS_twi
3L	20854249	3L_20854249_SNP [dm3] 3L_20861149_SNP [dm6]	C	A	3.569e^-4	0.852	INTRON CG32432
3R	26599100	3R_26599100_SNP [dm3] 3R_30773378_SNP [dm6]	G	T	3.610e^-4	0.852	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	11060169	2L_11060169_SNP [dm3] 2L_11060169_SNP [dm6]	C	A	3.613e^-4	0.852	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	11060170	2L_11060170_SNP [dm3] 2L_11060170_SNP [dm6]	A	T	3.613e^-4	0.852	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	11060209	2L_11060209_SNP [dm3] 2L_11060209_SNP [dm6]	G	A	3.613e^-4	0.852	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	9709260	3R_9709260_SNP [dm3] 3R_13883538_SNP [dm6]	C	T	3.617e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14145367	2R_14145367_SNP [dm3] 2R_18257862_SNP [dm6]	A	G	3.618e^-4	0.852	DOWNSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11940080	3R_11940080_SNP [dm3] 3R_16114358_SNP [dm6]	C	T	3.625e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	3.625e^-4	0.852	INTRON 4EHP
3R	7798413	3R_7798413_SNP [dm3] 3R_11972691_SNP [dm6]	C	T	3.644e^-4	0.852	SYNONYMOUS_CODING GC2 DOWNSTREAM Tango9
X	5257681	X_5257681_SNP [dm3] X_5363648_SNP [dm6]	C	T	3.650e^-4	0.852	INTRON SK	TF binding site BDTNP1_TFBS_dl
3L	7139979	3L_7139979_SNP [dm3] 3L_7146879_SNP [dm6]	A	G	3.660e^-4	0.852	SYNONYMOUS_CODING corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4192345	2R_4192345_SNP [dm3] 2R_8304840_SNP [dm6]	A	G	3.663e^-4	0.852	EXON CR44447
X	21250809	X_21250809_SNP [dm3] X_21379782_SNP [dm6]	C	T	3.678e^-4	0.852	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12283844	X_12283844_SNP [dm3] X_12389811_SNP [dm6]	T	C	3.679e^-4	0.852	INTERGENIC
X	5869023	X_5869023_SNP [dm3] X_5974990_SNP [dm6]	A	C	3.689e^-4	0.852	INTRON Grip
2L	3281674	2L_3281674_SNP [dm3] 2L_3281674_SNP [dm6]	C	T	3.690e^-4	0.852	INTERGENIC
3L	10811062	3L_10811062_SNP [dm3] 3L_10817962_SNP [dm6]	G	C	3.710e^-4	0.852	DOWNSTREAM CR45247 INTERGENIC
3L	12067740	3L_12067740_SNP [dm3] 3L_12074640_SNP [dm6]	G	A	3.714e^-4	0.852	INTRON Sema-5c
3R	12922333	3R_12922333_SNP [dm3] 3R_17096611_SNP [dm6]	C	T	3.714e^-4	0.852	INTRON cher
3L	8718691	3L_8718691_SNP [dm3] 3L_8725591_SNP [dm6]	C	A	3.719e^-4	0.852	SYNONYMOUS_CODING CG43965 UTR_3_PRIME CG6511
3L	1362241	3L_1362241_SNP [dm3] 3L_1362241_SNP [dm6]	C	T	3.722e^-4	0.852	INTRON Ptp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3582663	2L_3582663_SNP [dm3] 2L_3582663_SNP [dm6]	T	A	3.729e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_sens
3R	12922495	3R_12922495_SNP [dm3] 3R_17096773_SNP [dm6]	A	G	3.734e^-4	0.852	INTRON cher
2R	5049258	2R_5049258_SNP [dm3] 2R_9161753_SNP [dm6]	A	G	3.743e^-4	0.852	UPSTREAM CG8008 DOWNSTREAM CG8046 EXON CR44283
X	12454400	X_12454400_INS [dm3] X_12560367_INS [dm6]	G	GCGG	3.754e^-4	0.852	INTRON CG43921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9634737	X_9634737_INS [dm3] X_9740704_INS [dm6]	G	GG	3.757e^-4	0.852	INTRON Sp1	TF binding site BDTNP1_TFBS_twi
2L	17417967	2L_17417967_SNP [dm3] 2L_17417967_SNP [dm6]	T	A	3.768e^-4	0.852	INTRON Dif	TF binding site mE1_TFBS_cad
X	18148622	X_18148622_SNP [dm3] X_18254589_SNP [dm6]	C	T	3.771e^-4	0.852	INTERGENIC
X	18148623	X_18148623_SNP [dm3] X_18254590_SNP [dm6]	T	G	3.771e^-4	0.852	INTERGENIC
2R	16563213	2R_16563213_SNP [dm3] 2R_20675708_SNP [dm6]	A	G	3.772e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4795581	3L_4795581_SNP [dm3] 3L_4795581_SNP [dm6]	G	T	3.772e^-4	0.852	INTRON RhoGEF64C
3L	4795669	3L_4795669_SNP [dm3] 3L_4795669_SNP [dm6]	C	T	3.772e^-4	0.852	INTRON RhoGEF64C
3L	4991780	3L_4991780_SNP [dm3] 3L_4991780_SNP [dm6]	C	A	3.772e^-4	0.852	INTRON Con	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7146096	3L_7146096_SNP [dm3] 3L_7152996_SNP [dm6]	A	G	3.772e^-4	0.852	INTRON corn
3L	7741812	3L_7741812_SNP [dm3] 3L_7748712_SNP [dm6]	G	T	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7741996	3L_7741996_INS [dm3] 3L_7748896_INS [dm6]	A	AA	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3L	7742004	3L_7742004_SNP [dm3] 3L_7748904_SNP [dm6]	C	T	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3L	7742008	3L_7742008_INS [dm3] 3L_7748908_INS [dm6]	A	AAGCCCGTA	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3L	7742010	3L_7742010_SNP [dm3] 3L_7748910_SNP [dm6]	T	C	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3L	7742053	3L_7742053_SNP [dm3] 3L_7748953_SNP [dm6]	A	T	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3L	7742117	3L_7742117_SNP [dm3] 3L_7749017_SNP [dm6]	T	A	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3L	7742659	3L_7742659_DEL [dm3] 3L_7749559_DEL [dm6]	TT	T	3.772e^-4	0.852	UTR_3_PRIME CG13685 INTRON CG32373
3R	7746450	3R_7746450_SNP [dm3] 3R_11920728_SNP [dm6]	G	A	3.772e^-4	0.852	INTRON Cad87A
3R	7747667	3R_7747667_SNP [dm3] 3R_11921945_SNP [dm6]	G	C	3.772e^-4	0.852	INTRON Cad87A
3R	7752638	3R_7752638_SNP [dm3] 3R_11926916_SNP [dm6]	C	T	3.772e^-4	0.852	INTRON Cad87A
3R	7755999	3R_7755999_SNP [dm3] 3R_11930277_SNP [dm6]	T	A	3.772e^-4	0.852	UPSTREAM CG14731 INTRON Cad87A
3R	7756304	3R_7756304_SNP [dm3] 3R_11930582_SNP [dm6]	G	A	3.772e^-4	0.852	UPSTREAM CG14731 INTRON Cad87A
3R	7758008	3R_7758008_SNP [dm3] 3R_11932286_SNP [dm6]	G	A	3.772e^-4	0.852	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	7759668	3R_7759668_SNP [dm3] 3R_11933946_SNP [dm6]	C	G	3.772e^-4	0.852	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
X	17713026	X_17713026_SNP [dm3] X_17818993_SNP [dm6]	G	A	3.772e^-4	0.852	DOWNSTREAM CG12986 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17887253	3R_17887253_SNP [dm3] 3R_22061531_SNP [dm6]	C	A	3.779e^-4	0.852	INTRON how
2R	16834138	2R_16834138_SNP [dm3] 2R_20946633_SNP [dm6]	T	A	3.784e^-4	0.852	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC
3R	9368075	3R_9368075_SNP [dm3] 3R_13542353_SNP [dm6]	G	A	3.794e^-4	0.852	INTERGENIC
2R	16312702	2R_16312702_SNP [dm3] 2R_20425197_SNP [dm6]	T	G	3.796e^-4	0.852	INTRON CG12484
3L	11224074	3L_11224074_SNP [dm3] 3L_11230974_SNP [dm6]	A	C	3.802e^-4	0.852	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	27189481	3R_27189481_SNP [dm3] 3R_31363759_SNP [dm6]	A	C	3.815e^-4	0.852	INTRON CG34347
3L	1276095	3L_1276095_SNP [dm3] 3L_1276095_SNP [dm6]	C	A	3.830e^-4	0.852	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2L	20595079	2L_20595079_SNP [dm3] 2L_20595079_SNP [dm6]	A	C	3.834e^-4	0.852	INTRON CR44909
3R	12923023	3R_12923023_SNP [dm3] 3R_17097301_SNP [dm6]	A	T	3.847e^-4	0.852	INTRON cher
2R	16834139	2R_16834139_SNP [dm3] 2R_20946634_SNP [dm6]	A	G	3.851e^-4	0.852	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC
2R	16834142	2R_16834142_SNP [dm3] 2R_20946637_SNP [dm6]	G	A	3.851e^-4	0.852	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	4357514	2R_4357514_SNP [dm3] 2R_8470009_SNP [dm6]	G	A	3.852e^-4	0.852	INTRON Mal-A7
3R	26776699	3R_26776699_SNP [dm3] 3R_30950977_SNP [dm6]	C	T	3.857e^-4	0.852	INTERGENIC
2R	12014082	2R_12014082_SNP [dm3] 2R_16126577_SNP [dm6]	G	A	3.864e^-4	0.852	INTRON spin	TF binding site BDTNP1_TFBS_dl
3L	12067720	3L_12067720_SNP [dm3] 3L_12074620_SNP [dm6]	G	A	3.908e^-4	0.852	INTRON Sema-5c
3L	12067730	3L_12067730_SNP [dm3] 3L_12074630_SNP [dm6]	C	G	3.908e^-4	0.852	INTRON Sema-5c
3L	725542	3L_725542_SNP [dm3] 3L_725542_SNP [dm6]	T	C	3.908e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens
3L	14594430	3L_14594430_SNP [dm3] 3L_14601330_SNP [dm6]	A	G	3.908e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10828320	2L_10828320_SNP [dm3] 2L_10828320_SNP [dm6]	G	T	3.914e^-4	0.852	INTRON Nos
X	12270217	X_12270217_SNP [dm3] X_12376184_SNP [dm6]	G	A	3.915e^-4	0.852	SYNONYMOUS_CODING Ir11a	TF binding site mE1_TFBS_chinmo
3L	2125236	3L_2125236_SNP [dm3] 3L_2125236_SNP [dm6]	C	T	3.917e^-4	0.852	SPLICE_SITE_REGION zormin INTRON zormin	TF binding site mE1_TFBS_cad
2R	18527395	2R_18527395_SNP [dm3] 2R_22639890_SNP [dm6]	T	C	3.922e^-4	0.852	DOWNSTREAM RpS24 INTRON CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10088361	X_10088361_SNP [dm3] X_10194328_SNP [dm6]	G	A	3.924e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
3L	12662242	3L_12662242_SNP [dm3] 3L_12669142_SNP [dm6]	T	A	3.929e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8714513	3L_8714513_SNP [dm3] 3L_8721413_SNP [dm6]	A	T	3.979e^-4	0.852	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	17909619	X_17909619_SNP [dm3] X_18015586_SNP [dm6]	C	T	3.980e^-4	0.852	UPSTREAM Sh INTRON Sh
2L	13962412	2L_13962412_SNP [dm3] 2L_13962412_SNP [dm6]	G	T	3.981e^-4	0.852	SYNONYMOUS_CODING NimA UTR_3_PRIME NimA
3R	22635839	3R_22635839_SNP [dm3] 3R_26810117_SNP [dm6]	C	A	3.988e^-4	0.852	INTRON Tl
3L	11251495	3L_11251495_SNP [dm3] 3L_11258395_SNP [dm6]	T	A	3.993e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19341296	3R_19341296_SNP [dm3] 3R_23515574_SNP [dm6]	C	T	3.995e^-4	0.852	INTRON Irk2
3R	9962694	3R_9962694_SNP [dm3] 3R_14136972_SNP [dm6]	C	A	3.997e^-4	0.852	INTERGENIC
3L	19338964	3L_19338964_SNP [dm3] 3L_19345864_SNP [dm6]	G	A	4.000e^-4	0.852	INTRON CG32206
3R	19946174	3R_19946174_DEL [dm3] 3R_24120452_DEL [dm6]	CTCAGTTTCCGCC...	C	4.004e^-4	0.852	CODON_DELETION Rootletin	TF binding site mE1_TFBS_chinmo
3R	19946198	3R_19946198_SNP [dm3] 3R_24120476_SNP [dm6]	T	A	4.004e^-4	0.852	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_chinmo
X	10924391	X_10924391_SNP [dm3] X_11030358_SNP [dm6]	T	C	4.010e^-4	0.852	INTRON CG42339
3L	7635036	3L_7635036_SNP [dm3] 3L_7641936_SNP [dm6]	T	A	4.022e^-4	0.852	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	2026570	3L_2026570_DEL [dm3] 3L_2026570_DEL [dm6]	GTG	G	4.024e^-4	0.852	UPSTREAM CG34259 INTERGENIC
2R	5386904	2R_5386904_SNP [dm3] 2R_9499399_SNP [dm6]	T	C	4.031e^-4	0.852	INTRON Wnt2
2R	17473916	2R_17473916_SNP [dm3] 2R_21586411_SNP [dm6]	G	C	4.037e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18184872	2R_18184872_SNP [dm3] 2R_22297367_SNP [dm6]	C	A	4.038e^-4	0.852	DOWNSTREAM CG5819 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	2343047	3L_2343047_SNP [dm3] 3L_2343047_SNP [dm6]	T	C	4.040e^-4	0.852	SYNONYMOUS_CODING MsR1
3L	6247154	3L_6247154_SNP [dm3] 3L_6254054_SNP [dm6]	T	G	4.050e^-4	0.852	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13923938	2R_13923938_SNP [dm3] 2R_18036433_SNP [dm6]	C	T	4.088e^-4	0.852	INTERGENIC
2R	17278357	2R_17278357_SNP [dm3] 2R_21390852_SNP [dm6]	C	T	4.089e^-4	0.852	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2R	4350415	2R_4350415_SNP [dm3] 2R_8462910_SNP [dm6]	C	T	4.120e^-4	0.852	SYNONYMOUS_CODING Mal-A5 UTR_5_PRIME Mal-A5	TF binding site mE1_TFBS_Trl
2L	16424469	2L_16424469_SNP [dm3] 2L_16424469_SNP [dm6]	G	A	4.128e^-4	0.852	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	4743300	3R_4743300_DEL [dm3] 3R_8917578_DEL [dm6]	TCAGCT	T	4.137e^-4	0.852	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16936292	2R_16936292_SNP [dm3] 2R_21048787_SNP [dm6]	C	T	4.141e^-4	0.852	DOWNSTREAM shg INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10883335	3L_10883335_SNP [dm3] 3L_10890235_SNP [dm6]	T	C	4.148e^-4	0.852	SYNONYMOUS_CODING Cpr67Fa1
2R	13203295	2R_13203295_SNP [dm3] 2R_17315790_SNP [dm6]	T	G	4.161e^-4	0.852	INTRON mbl
2L	3329738	2L_3329738_SNP [dm3] 2L_3329738_SNP [dm6]	G	A	4.180e^-4	0.852	UTR_3_PRIME CG33282
2R	18527304	2R_18527304_SNP [dm3] 2R_22639799_SNP [dm6]	G	A	4.183e^-4	0.852	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16951208	2R_16951208_SNP [dm3] 2R_21063703_SNP [dm6]	C	T	4.185e^-4	0.852	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13625389	X_13625389_SNP [dm3] X_13731356_SNP [dm6]	T	A	4.229e^-4	0.852	INTRON g	TF binding site BDTNP1_TFBS_dl
3R	6360024	3R_6360024_SNP [dm3] 3R_10534302_SNP [dm6]	G	A	4.230e^-4	0.852	INTRON hth
3R	6360246	3R_6360246_SNP [dm3] 3R_10534524_SNP [dm6]	T	C	4.230e^-4	0.852	INTRON hth
2R	16927226	2R_16927226_SNP [dm3] 2R_21039721_SNP [dm6]	T	A	4.236e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14753341	2L_14753341_SNP [dm3] 2L_14753341_SNP [dm6]	C	T	4.240e^-4	0.852	INTERGENIC
3R	19430628	3R_19430628_SNP [dm3] 3R_23604906_SNP [dm6]	G	C	4.240e^-4	0.852	NON_SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13823015	3L_13823015_SNP [dm3] 3L_13829915_SNP [dm6]	A	G	4.249e^-4	0.852	INTERGENIC
X	9723014	X_9723014_SNP [dm3] X_9828981_SNP [dm6]	G	A	4.260e^-4	0.852	INTRON CG32698
3L	9410586	3L_9410586_SNP [dm3] 3L_9417486_SNP [dm6]	G	T	4.265e^-4	0.852	UPSTREAM CG3982 INTRON CG3967
3R	11073082	3R_11073082_SNP [dm3] 3R_15247360_SNP [dm6]	G	A	4.275e^-4	0.852	NON_SYNONYMOUS_CODING CG6499 DOWNSTREAM Hsc70-4	TF binding site mE1_TFBS_cad
3R	7786666	3R_7786666_SNP [dm3] 3R_11960944_SNP [dm6]	G	T	4.286e^-4	0.852	UTR_3_PRIME CG3281 DOWNSTREAM Hsp70Ab	TF binding site mE1_TFBS_chinmo
2L	11058956	2L_11058956_SNP [dm3] 2L_11058956_SNP [dm6]	G	A	4.308e^-4	0.852	INTRON Samuel	TF binding site BDTNP1_TFBS_dl
2L	4736692	2L_4736692_SNP [dm3] 2L_4736692_SNP [dm6]	T	C	4.309e^-4	0.852	INTRON CG15630
2L	1575756	2L_1575756_SNP [dm3] 2L_1575756_SNP [dm6]	A	C	4.315e^-4	0.852	INTRON haf
X	13934101	X_13934101_SNP [dm3] X_14040068_SNP [dm6]	C	T	4.318e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19486420	3R_19486420_SNP [dm3] 3R_23660698_SNP [dm6]	C	T	4.323e^-4	0.852	INTRON CG31145
2L	3281290	2L_3281290_INS [dm3] 2L_3281290_INS [dm6]	C	CCCGTTAACAC...	4.327e^-4	0.852	UPSTREAM CG3332 INTERGENIC
3R	15045585	3R_15045585_INS [dm3] 3R_19219863_INS [dm6]	A	AG	4.343e^-4	0.852	INTRON vib
3R	14505443	3R_14505443_SNP [dm3] 3R_18679721_SNP [dm6]	C	A	4.350e^-4	0.852	NON_SYNONYMOUS_CODING CG7706 UPSTREAM CG7708
2L	12074934	2L_12074934_SNP [dm3] 2L_12074934_SNP [dm6]	T	G	4.358e^-4	0.852	INTERGENIC
3L	16069813	3L_16069813_SNP [dm3] 3L_16076713_SNP [dm6]	T	A	4.358e^-4	0.852	INTRON Mbs
3R	14148838	3R_14148838_SNP [dm3] 3R_18323116_SNP [dm6]	T	A	4.364e^-4	0.852	INTRON CG31235
2R	16109318	2R_16109318_SNP [dm3] 2R_20221813_SNP [dm6]	T	G	4.368e^-4	0.852	EXON CR45423
2R	16340885	2R_16340885_SNP [dm3] 2R_20453380_SNP [dm6]	C	G	4.368e^-4	0.852	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17480791	2R_17480791_SNP [dm3] 2R_21593286_SNP [dm6]	T	A	4.371e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	761411	3L_761411_SNP [dm3] 3L_761411_SNP [dm6]	A	G	4.378e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb
X	17909642	X_17909642_SNP [dm3] X_18015609_SNP [dm6]	A	T	4.381e^-4	0.852	UPSTREAM Sh INTRON Sh
2R	14666267	2R_14666267_INS [dm3] 2R_18778762_INS [dm6]	T	CCAACGTGCGG...	4.398e^-4	0.852	INTERGENIC
3L	13890261	3L_13890261_SNP [dm3] 3L_13897161_SNP [dm6]	C	T	4.404e^-4	0.852	INTRON dysc
2L	11427813	2L_11427813_SNP [dm3] 2L_11427813_SNP [dm6]	C	T	4.404e^-4	0.852	INTERGENIC
3R	14502064	3R_14502064_SNP [dm3] 3R_18676342_SNP [dm6]	T	C	4.415e^-4	0.852	UTR_3_PRIME CG7705 INTRON CG7705
2R	18515466	2R_18515466_SNP [dm3] 2R_22627961_SNP [dm6]	C	A	4.420e^-4	0.852	INTRON CG33143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13806916	2L_13806916_INS [dm3] 2L_13806916_INS [dm6]	C	CATTC	4.424e^-4	0.852	INTRON CAH1
2L	14753346	2L_14753346_SNP [dm3] 2L_14753346_SNP [dm6]	G	A	4.440e^-4	0.852	INTERGENIC
2L	6215113	2L_6215113_SNP [dm3] 2L_6215113_SNP [dm6]	C	A	4.469e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6561886	3R_6561886_INS [dm3] 3R_10736164_INS [dm6]	T	TC	4.469e^-4	0.852	UPSTREAM tomboy20 INTERGENIC
3R	16537943	3R_16537943_SNP [dm3] 3R_20712221_SNP [dm6]	A	G	4.473e^-4	0.852	INTRON Oamb
2R	17665014	2R_17665014_SNP [dm3] 2R_21777509_SNP [dm6]	A	G	4.509e^-4	0.852	INTERGENIC
2R	12557059	2R_12557059_SNP [dm3] 2R_16669554_SNP [dm6]	T	G	4.516e^-4	0.852	UPSTREAM CG34457 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10697455	3L_10697455_SNP [dm3] 3L_10704355_SNP [dm6]	G	A	4.525e^-4	0.852	INTERGENIC
2R	7385409	2R_7385409_SNP [dm3] 2R_11497904_SNP [dm6]	A	T	4.525e^-4	0.852	INTRON inv
2R	7385414	2R_7385414_SNP [dm3] 2R_11497909_SNP [dm6]	T	C	4.525e^-4	0.852	INTRON inv
2R	7385425	2R_7385425_SNP [dm3] 2R_11497920_SNP [dm6]	A	G	4.525e^-4	0.852	INTRON inv
3L	20793208	3L_20793208_INS [dm3] 3L_20800108_INS [dm6]	A	AAATTATCGTGCCGAATTTA...	4.531e^-4	0.852	UPSTREAM Spc105R DOWNSTREAM CG4365 INTERGENIC	TF binding site mE1_TFBS_cad
2R	2718661	2R_2718661_SNP [dm3] 2R_6831156_SNP [dm6]	A	T	4.533e^-4	0.852	DOWNSTREAM CG34215 INTRON CG15236
3L	1231568	3L_1231568_SNP [dm3] 3L_1231568_SNP [dm6]	A	C	4.538e^-4	0.852	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17909592	X_17909592_SNP [dm3] X_18015559_SNP [dm6]	G	T	4.570e^-4	0.852	UPSTREAM Sh INTRON Sh
3R	7731312	3R_7731312_SNP [dm3] 3R_11905590_SNP [dm6]	T	C	4.589e^-4	0.852	INTRON Cad87A
3L	6429935	3L_6429935_SNP [dm3] 3L_6436835_SNP [dm6]	A	C	4.593e^-4	0.852	INTRON CG42747
X	20319583	X_20319583_SNP [dm3] X_20448556_SNP [dm6]	C	A	4.597e^-4	0.852	UPSTREAM CG32506 INTERGENIC
X	20319584	X_20319584_SNP [dm3] X_20448557_SNP [dm6]	A	C	4.597e^-4	0.852	UPSTREAM CG32506 INTERGENIC
2L	19433784	2L_19433784_DEL [dm3] 2L_19433784_DEL [dm6]	CC	C	4.605e^-4	0.852	INTRON Rab9
2L	7040006	2L_7040006_SNP [dm3] 2L_7040006_SNP [dm6]	T	C	4.608e^-4	0.852	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21079332	3R_21079332_SNP [dm3] 3R_25253610_SNP [dm6]	G	C	4.609e^-4	0.852	NON_SYNONYMOUS_CODING Nup358
3R	15106163	3R_15106163_SNP [dm3] 3R_19280441_SNP [dm6]	C	T	4.610e^-4	0.852	UPSTREAM CR44173 INTERGENIC
3R	16991750	3R_16991750_DEL [dm3] 3R_21166028_DEL [dm6]	AA	A	4.611e^-4	0.852	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
3R	3456645	3R_3456645_SNP [dm3] 3R_7630923_SNP [dm6]	G	A	4.615e^-4	0.852	INTRON CG34127
3L	8204691	3L_8204691_SNP [dm3] 3L_8211591_SNP [dm6]	T	C	4.617e^-4	0.852	UPSTREAM CG32364 & 1 other INTERGENIC
3L	6307817	3L_6307817_SNP [dm3] 3L_6314717_SNP [dm6]	G	C	4.628e^-4	0.852	INTERGENIC
2R	6468157	2R_6468157_SNP [dm3] 2R_10580652_SNP [dm6]	G	A	4.630e^-4	0.852	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	20689883	X_20689883_SNP [dm3] X_20818856_SNP [dm6]	G	A	4.630e^-4	0.852	INTRON shakB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7789766	3R_7789766_SNP [dm3] 3R_11964044_SNP [dm6]	A	G	4.635e^-4	0.852	SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17327058	2R_17327058_SNP [dm3] 2R_21439553_SNP [dm6]	C	G	4.637e^-4	0.852	INTRON Sdc
3R	21901046	3R_21901046_SNP [dm3] 3R_26075324_SNP [dm6]	T	C	4.673e^-4	0.852	INTERGENIC
3L	2023214	3L_2023214_SNP [dm3] 3L_2023214_SNP [dm6]	A	G	4.678e^-4	0.852	SYNONYMOUS_CODING CG42356
3L	13334606	3L_13334606_SNP [dm3] 3L_13341506_SNP [dm6]	G	A	4.680e^-4	0.852	INTERGENIC
2R	19792355	2R_19792355_SNP [dm3] 2R_23904832_SNP [dm6]	T	C	4.681e^-4	0.852	SYNONYMOUS_CODING CG13562 DOWNSTREAM Nap1
3R	12922818	3R_12922818_SNP [dm3] 3R_17097096_SNP [dm6]	G	T	4.689e^-4	0.852	INTRON cher
3L	5088343	3L_5088343_SNP [dm3] 3L_5088343_SNP [dm6]	A	T	4.707e^-4	0.852	INTERGENIC
2L	20694211	2L_20694211_SNP [dm3] 2L_20694211_SNP [dm6]	C	T	4.719e^-4	0.852	INTRON Hr38
X	7118191	X_7118191_SNP [dm3] X_7224158_SNP [dm6]	C	T	4.720e^-4	0.852	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7866933	X_7866933_SNP [dm3] X_7972900_SNP [dm6]	T	G	4.727e^-4	0.852	INTRON sn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5723276	3R_5723276_SNP [dm3] 3R_9897554_SNP [dm6]	C	T	4.731e^-4	0.852	INTRON Glut4EF
3L	3536567	3L_3536567_SNP [dm3] 3L_3536567_SNP [dm6]	C	T	4.733e^-4	0.852	INTRON Eip63E
2R	9353509	2R_9353509_SNP [dm3] 2R_13466004_SNP [dm6]	A	G	4.737e^-4	0.852	INTRON arr
X	5256793	X_5256793_SNP [dm3] X_5362760_SNP [dm6]	T	G	4.739e^-4	0.852	INTRON SK
X	5671053	X_5671053_SNP [dm3] X_5777020_SNP [dm6]	A	G	4.740e^-4	0.852	UPSTREAM CG42264 DOWNSTREAM CG3108 INTRON CG42699
X	4517005	X_4517005_DEL [dm3] X_4622972_DEL [dm6]	GCAG	G	4.751e^-4	0.852	CODON_DELETION peb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10308478	2L_10308478_SNP [dm3] 2L_10308478_SNP [dm6]	G	T	4.756e^-4	0.852	DOWNSTREAM CG4968 INTRON Cdk5alpha
2L	10308480	2L_10308480_SNP [dm3] 2L_10308480_SNP [dm6]	A	T	4.756e^-4	0.852	DOWNSTREAM CG4968 INTRON Cdk5alpha
2L	10345161	2L_10345161_SNP [dm3] 2L_10345161_SNP [dm6]	C	T	4.756e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	20526277	2L_20526277_SNP [dm3] 2L_20526277_SNP [dm6]	A	G	4.756e^-4	0.852	INTERGENIC
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	4.756e^-4	0.852	UTR_3_PRIME CG34351
2L	4722391	2L_4722391_SNP [dm3] 2L_4722391_SNP [dm6]	C	G	4.756e^-4	0.852	UTR_3_PRIME CG34351
2L	7859416	2L_7859416_SNP [dm3] 2L_7859416_SNP [dm6]	G	T	4.756e^-4	0.852	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12139416	2R_12139416_SNP [dm3] 2R_16251911_SNP [dm6]	T	C	4.756e^-4	0.852	INTRON CngA
2R	12936108	2R_12936108_SNP [dm3] 2R_17048603_SNP [dm6]	C	A	4.756e^-4	0.852	UTR_3_PRIME CG9642 UPSTREAM CG9646	TF binding site BDTNP1_TFBS_dl
3L	5935751	3L_5935751_SNP [dm3] 3L_5942651_SNP [dm6]	G	T	4.756e^-4	0.852	INTRON CG33993
X	11745040	X_11745040_SNP [dm3] X_11851007_SNP [dm6]	C	A	4.756e^-4	0.852	UTR_3_PRIME p24-1 UPSTREAM CR45619 DOWNSTREAM p24-1
X	15517544	X_15517544_DEL [dm3] X_15623511_DEL [dm6]	TTT	T	4.756e^-4	0.852	INTRON sog	TF binding site BDTNP1_TFBS_dl
X	20417313	X_20417313_SNP [dm3] X_20546286_SNP [dm6]	G	A	4.756e^-4	0.852	INTRON RunxB
X	20419163	X_20419163_SNP [dm3] X_20548136_SNP [dm6]	C	G	4.756e^-4	0.852	INTRON RunxB
X	3261092	X_3261092_INS [dm3] X_3367059_INS [dm6]	A	ATACAG	4.756e^-4	0.852	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6790684	X_6790684_SNP [dm3] X_6896651_SNP [dm6]	A	C	4.756e^-4	0.852	INTERGENIC
2L	21975907	2L_21975907_SNP [dm3] 2L_21975907_SNP [dm6]	C	A	4.762e^-4	0.852	INTERGENIC
2L	12519997	2L_12519997_SNP [dm3] 2L_12519997_SNP [dm6]	A	C	4.763e^-4	0.852	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17280240	2R_17280240_SNP [dm3] 2R_21392735_SNP [dm6]	T	G	4.764e^-4	0.852	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
3L	5985743	3L_5985743_SNP [dm3] 3L_5992643_SNP [dm6]	T	C	4.769e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	15167811	3L_15167811_SNP [dm3] 3L_15174711_SNP [dm6]	A	G	4.777e^-4	0.852	INTERGENIC
X	5647474	X_5647474_SNP [dm3] X_5753441_SNP [dm6]	T	A	4.778e^-4	0.852	SYNONYMOUS_CODING CG15772 UTR_3_PRIME lin-52 DOWNSTREAM lin-52	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11316615	3R_11316615_SNP [dm3] 3R_15490893_SNP [dm6]	T	C	4.789e^-4	0.852	SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21085143	X_21085143_SNP [dm3] X_21214116_SNP [dm6]	A	G	4.793e^-4	0.852	INTRON CG32521
X	14257959	X_14257959_SNP [dm3] X_14363926_SNP [dm6]	G	C	4.801e^-4	0.852	INTRON dpr8
2L	20564796	2L_20564796_SNP [dm3] 2L_20564796_SNP [dm6]	A	C	4.806e^-4	0.852	INTRON CR45347
X	20319971	X_20319971_SNP [dm3] X_20448944_SNP [dm6]	T	G	4.807e^-4	0.852	UPSTREAM CG32506 INTERGENIC
3L	3999235	3L_3999235_SNP [dm3] 3L_3999235_SNP [dm6]	C	T	4.808e^-4	0.852	INTERGENIC
2L	5372015	2L_5372015_SNP [dm3] 2L_5372015_SNP [dm6]	A	G	4.814e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7766182	3R_7766182_SNP [dm3] 3R_11940460_SNP [dm6]	G	C	4.821e^-4	0.852	INTRON Cad87A
3L	18884495	3L_18884495_SNP [dm3] 3L_18891395_SNP [dm6]	T	G	4.831e^-4	0.852	UPSTREAM CG3961 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	2177157	3L_2177157_SNP [dm3] 3L_2177157_SNP [dm6]	C	T	4.835e^-4	0.852	INTERGENIC
3L	8717359	3L_8717359_SNP [dm3] 3L_8724259_SNP [dm6]	T	C	4.839e^-4	0.852	SYNONYMOUS_CODING CG6511
2R	15306059	2R_15306059_SNP [dm3] 2R_19418554_SNP [dm6]	T	C	4.852e^-4	0.852	SPLICE_SITE_REGION hts INTRON hts
3R	7751552	3R_7751552_SNP [dm3] 3R_11925830_SNP [dm6]	C	T	4.853e^-4	0.852	INTRON Cad87A
X	21979282	X_21979282_SNP [dm3] X_22577446_SNP [dm6]	G	A	4.857e^-4	0.852	INTERGENIC
2L	12163963	2L_12163963_SNP [dm3] 2L_12163963_SNP [dm6]	A	T	4.864e^-4	0.852	UPSTREAM ZnT33D INTRON CG31760
2L	11095515	2L_11095515_SNP [dm3] 2L_11095515_SNP [dm6]	T	C	4.881e^-4	0.852	UTR_3_PRIME Ge-1 DOWNSTREAM CG4705	TF binding site mE1_TFBS_HSA
3R	15046721	3R_15046721_SNP [dm3] 3R_19220999_SNP [dm6]	G	C	4.889e^-4	0.852	INTRON vib
X	11660540	X_11660540_SNP [dm3] X_11766507_SNP [dm6]	G	A	4.893e^-4	0.852	INTRON m
3L	995321	3L_995321_SNP [dm3] 3L_995321_SNP [dm6]	A	C	4.936e^-4	0.852	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	5451717	2R_5451717_SNP [dm3] 2R_9564212_SNP [dm6]	C	A	4.936e^-4	0.852	DOWNSTREAM CG1809 EXON CR45281
2R	5451718	2R_5451718_SNP [dm3] 2R_9564213_SNP [dm6]	C	T	4.936e^-4	0.852	DOWNSTREAM CG1809 EXON CR45281
3R	10180669	3R_10180669_SNP [dm3] 3R_14354947_SNP [dm6]	A	C	4.938e^-4	0.852	INTRON NK7.1
3R	9754558	3R_9754558_SNP [dm3] 3R_13928836_SNP [dm6]	T	C	4.940e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7729280	3R_7729280_SNP [dm3] 3R_11903558_SNP [dm6]	G	C	4.942e^-4	0.852	INTRON Cad87A
3L	22628337	3L_22628337_SNP [dm3] 3L_22635237_SNP [dm6]	A	G	4.944e^-4	0.852	INTRON CG14459
2R	17275809	2R_17275809_SNP [dm3] 2R_21388304_SNP [dm6]	T	C	4.953e^-4	0.852	SYNONYMOUS_CODING Acox57D-p
2R	17277673	2R_17277673_SNP [dm3] 2R_21390168_SNP [dm6]	T	C	4.953e^-4	0.852	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2R	20413714	2R_20413714_SNP [dm3] 2R_24526191_SNP [dm6]	T	C	4.969e^-4	0.852	UTR_5_PRIME Brca2 UPSTREAM CG4612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12659055	3L_12659055_SNP [dm3] 3L_12665955_SNP [dm6]	C	G	4.971e^-4	0.852	INTERGENIC
3R	10206415	3R_10206415_SNP [dm3] 3R_14380693_SNP [dm6]	A	T	4.973e^-4	0.852	UTR_3_PRIME soti
3R	10206416	3R_10206416_SNP [dm3] 3R_14380694_SNP [dm6]	T	C	4.973e^-4	0.852	UTR_3_PRIME soti
2R	6750949	2R_6750949_SNP [dm3] 2R_10863444_SNP [dm6]	C	T	4.981e^-4	0.852	INTRON CG30015
2R	14572832	2R_14572832_SNP [dm3] 2R_18685327_SNP [dm6]	C	T	4.984e^-4	0.852	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
2R	14572856	2R_14572856_SNP [dm3] 2R_18685351_SNP [dm6]	G	A	4.984e^-4	0.852	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
3L	12404892	3L_12404892_SNP [dm3] 3L_12411792_SNP [dm6]	A	T	4.986e^-4	0.852	INTRON CG32103
3L	12404893	3L_12404893_SNP [dm3] 3L_12411793_SNP [dm6]	A	T	4.986e^-4	0.852	INTRON CG32103
2R	4805197	2R_4805197_SNP [dm3] 2R_8917692_SNP [dm6]	C	A	5.002e^-4	0.852	UTR_3_PRIME lin DOWNSTREAM CG34219	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	5160729	2R_5160729_SNP [dm3] 2R_9273224_SNP [dm6]	C	G	5.002e^-4	0.852	UPSTREAM Pkn INTRON Pkn	TF binding site BDTNP1_TFBS_twi
2R	5283734	2R_5283734_SNP [dm3] 2R_9396229_SNP [dm6]	T	C	5.002e^-4	0.852	UPSTREAM CG8800 DOWNSTREAM CG8801 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	5283753	2R_5283753_INS [dm3] 2R_9396248_INS [dm6]	T	TAT	5.002e^-4	0.852	UPSTREAM CG8800 DOWNSTREAM CG8801 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15794600	3L_15794600_SNP [dm3] 3L_15801500_SNP [dm6]	C	T	5.004e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24151587	3R_24151587_SNP [dm3] 3R_28325865_SNP [dm6]	G	A	5.012e^-4	0.852	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Trl
X	16801467	X_16801467_SNP [dm3] X_16907434_SNP [dm6]	T	A	5.014e^-4	0.852	INTRON CR44754
X	16801486	X_16801486_DEL [dm3] X_16907453_DEL [dm6]	ATTGTATGTATTGC...	A	5.014e^-4	0.852	INTRON CR44754
X	16801503	X_16801503_DEL [dm3] X_16907470_DEL [dm6]	ATTTTC	A	5.014e^-4	0.852	INTRON CR44754
3L	1505242	3L_1505242_SNP [dm3] 3L_1505242_SNP [dm6]	G	A	5.018e^-4	0.852	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10088081	X_10088081_SNP [dm3] X_10194048_SNP [dm6]	T	G	5.018e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
3L	12193342	3L_12193342_SNP [dm3] 3L_12200242_SNP [dm6]	A	G	5.041e^-4	0.852	DOWNSTREAM Adk1 INTERGENIC
3R	14273663	3R_14273663_SNP [dm3] 3R_18447941_SNP [dm6]	G	T	5.044e^-4	0.852	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl
3L	18893118	3L_18893118_SNP [dm3] 3L_18900018_SNP [dm6]	T	C	5.048e^-4	0.852	DOWNSTREAM arx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11385974	2R_11385974_SNP [dm3] 2R_15498469_SNP [dm6]	A	C	5.052e^-4	0.852	INTERGENIC
2R	8787478	2R_8787478_SNP [dm3] 2R_12899973_SNP [dm6]	C	T	5.057e^-4	0.852	DOWNSTREAM vg INTERGENIC
2R	8502880	2R_8502880_SNP [dm3] 2R_12615375_SNP [dm6]	G	A	5.064e^-4	0.852	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
2L	6814255	2L_6814255_SNP [dm3] 2L_6814255_SNP [dm6]	G	C	5.071e^-4	0.852	INTERGENIC
3R	19340874	3R_19340874_SNP [dm3] 3R_23515152_SNP [dm6]	A	G	5.096e^-4	0.852	SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_sens
3R	19341259	3R_19341259_SNP [dm3] 3R_23515537_SNP [dm6]	G	A	5.096e^-4	0.852	INTRON Irk2
3R	19341277	3R_19341277_SNP [dm3] 3R_23515555_SNP [dm6]	T	G	5.096e^-4	0.852	INTRON Irk2
3R	19341279	3R_19341279_SNP [dm3] 3R_23515557_SNP [dm6]	G	A	5.096e^-4	0.852	INTRON Irk2
3R	19341284	3R_19341284_SNP [dm3] 3R_23515562_SNP [dm6]	G	A	5.096e^-4	0.852	INTRON Irk2
3R	19341286	3R_19341286_SNP [dm3] 3R_23515564_SNP [dm6]	T	A	5.096e^-4	0.852	INTRON Irk2
3R	19341288	3R_19341288_SNP [dm3] 3R_23515566_SNP [dm6]	C	G	5.096e^-4	0.852	INTRON Irk2
3R	19341289	3R_19341289_SNP [dm3] 3R_23515567_SNP [dm6]	T	A	5.096e^-4	0.852	INTRON Irk2
3R	25330364	3R_25330364_SNP [dm3] 3R_29504642_SNP [dm6]	C	T	5.102e^-4	0.852	UPSTREAM Trc8 INTERGENIC
X	17971477	X_17971477_SNP [dm3] X_18077444_SNP [dm6]	G	A	5.109e^-4	0.852	SPLICE_SITE_REGION Dhc16F INTRON Dhc16F
X	17971482	X_17971482_SNP [dm3] X_18077449_SNP [dm6]	G	A	5.109e^-4	0.852	INTRON Dhc16F
2R	18207965	2R_18207965_SNP [dm3] 2R_22320460_SNP [dm6]	G	T	5.118e^-4	0.852	INTRON Gp150 EXON CR44756	TF binding site mE1_TFBS_cad
2R	18527205	2R_18527205_SNP [dm3] 2R_22639700_SNP [dm6]	T	C	5.123e^-4	0.852	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18826847	X_18826847_DEL [dm3] X_18932814_DEL [dm6]	TTATTGTT	T	5.132e^-4	0.852	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9731783	3L_9731783_SNP [dm3] 3L_9738683_SNP [dm6]	T	C	5.144e^-4	0.852	INTRON CG42268
2L	7039976	2L_7039976_SNP [dm3] 2L_7039976_SNP [dm6]	G	A	5.145e^-4	0.852	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7951386	3L_7951386_SNP [dm3] 3L_7958286_SNP [dm6]	C	T	5.146e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12538707	X_12538707_SNP [dm3] X_12644674_SNP [dm6]	G	A	5.153e^-4	0.852	NON_SYNONYMOUS_CODING Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12283779	X_12283779_SNP [dm3] X_12389746_SNP [dm6]	T	A	5.160e^-4	0.852	INTERGENIC
3R	7731169	3R_7731169_SNP [dm3] 3R_11905447_SNP [dm6]	T	C	5.170e^-4	0.852	INTRON Cad87A
3R	7731175	3R_7731175_SNP [dm3] 3R_11905453_SNP [dm6]	A	T	5.170e^-4	0.852	INTRON Cad87A
3R	7731178	3R_7731178_SNP [dm3] 3R_11905456_SNP [dm6]	T	A	5.170e^-4	0.852	INTRON Cad87A
3R	7731188	3R_7731188_SNP [dm3] 3R_11905466_SNP [dm6]	T	G	5.170e^-4	0.852	INTRON Cad87A
3R	7731193	3R_7731193_SNP [dm3] 3R_11905471_SNP [dm6]	T	G	5.170e^-4	0.852	INTRON Cad87A
3R	7731204	3R_7731204_DEL [dm3] 3R_11905482_DEL [dm6]	ACCGAA	A	5.170e^-4	0.852	INTRON Cad87A
X	2346620	X_2346620_SNP [dm3] X_2452587_SNP [dm6]	T	A	5.178e^-4	0.852	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22043306	2L_22043306_SNP [dm3] 2L_22043306_SNP [dm6]	A	G	5.192e^-4	0.852	INTRON CG31601
2L	22043366	2L_22043366_SNP [dm3] 2L_22043366_SNP [dm6]	A	T	5.192e^-4	0.852	NON_SYNONYMOUS_CODING CG31601
2L	3766488	2L_3766488_SNP [dm3] 2L_3766488_SNP [dm6]	C	T	5.221e^-4	0.852	DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3L	1291581	3L_1291581_SNP [dm3] 3L_1291581_SNP [dm6]	T	C	5.224e^-4	0.852	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9450662	X_9450662_SNP [dm3] X_9556629_SNP [dm6]	G	C	5.224e^-4	0.852	UPSTREAM CG15317 DOWNSTREAM RpS28b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	2811326	3R_2811326_SNP [dm3] 3R_6985604_SNP [dm6]	T	A	5.234e^-4	0.852	INTRON Antp
2R	7140780	2R_7140780_SNP [dm3] 2R_11253275_SNP [dm6]	T	C	5.236e^-4	0.852	INTRON Cpr47Ea
2L	1214352	2L_1214352_SNP [dm3] 2L_1214352_SNP [dm6]	C	T	5.241e^-4	0.852	DOWNSTREAM CR45346 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	911357	3L_911357_SNP [dm3] 3L_911357_SNP [dm6]	A	G	5.244e^-4	0.852	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3L	9635066	3L_9635066_SNP [dm3] 3L_9641966_SNP [dm6]	G	C	5.249e^-4	0.852	DOWNSTREAM CG18180 INTRON fry
2R	17556702	2R_17556702_SNP [dm3] 2R_21669197_SNP [dm6]	C	A	5.257e^-4	0.852	SYNONYMOUS_CODING CG42380 UTR_5_PRIME CG9865 UTR_3_PRIME CG42379 & 1 other UPSTREAM NC2alpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	15681174	3L_15681174_SNP [dm3] 3L_15688074_SNP [dm6]	A	G	5.284e^-4	0.852	UPSTREAM CG34452 DOWNSTREAM CG34451 INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8889856	3L_8889856_SNP [dm3] 3L_8896756_SNP [dm6]	A	G	5.291e^-4	0.852	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9575003	3R_9575003_SNP [dm3] 3R_13749281_SNP [dm6]	G	A	5.298e^-4	0.852	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13871519	3R_13871519_SNP [dm3] 3R_18045797_SNP [dm6]	T	C	5.304e^-4	0.852	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2R	19272086	2R_19272086_SNP [dm3] 2R_23384563_SNP [dm6]	T	C	5.315e^-4	0.852	NON_SYNONYMOUS_CODING CG30414 DOWNSTREAM CR44784 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17759842	2R_17759842_SNP [dm3] 2R_21872337_SNP [dm6]	C	G	5.321e^-4	0.852	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27205228	3R_27205228_SNP [dm3] 3R_31379506_SNP [dm6]	A	T	5.325e^-4	0.852	INTERGENIC
2L	15482747	2L_15482747_SNP [dm3] 2L_15482747_SNP [dm6]	A	T	5.341e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17479223	2R_17479223_SNP [dm3] 2R_21591718_SNP [dm6]	A	G	5.358e^-4	0.852	DOWNSTREAM CG33225 INTERGENIC
2R	13532824	2R_13532824_SNP [dm3] 2R_17645319_SNP [dm6]	T	C	5.362e^-4	0.852	INTERGENIC
X	15461654	X_15461654_SNP [dm3] X_15567621_SNP [dm6]	G	A	5.386e^-4	0.852	INTERGENIC
3L	5789388	3L_5789388_SNP [dm3] 3L_5796288_SNP [dm6]	C	T	5.396e^-4	0.852	SYNONYMOUS_CODING Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20848293	3L_20848293_SNP [dm3] 3L_20855193_SNP [dm6]	C	G	5.397e^-4	0.852	SYNONYMOUS_CODING CG32432	TF binding site mE1_TFBS_cad
X	10130538	X_10130538_INS [dm3] X_10236505_INS [dm6]	T	TT	5.401e^-4	0.852	UTR_3_PRIME Hk
2L	16423648	2L_16423648_SNP [dm3] 2L_16423648_SNP [dm6]	G	A	5.418e^-4	0.852	INTRON CG5888	TF binding site BDTNP1_TFBS_dl
2R	6588414	2R_6588414_SNP [dm3] 2R_10700909_SNP [dm6]	A	G	5.418e^-4	0.852	INTRON stan
2R	7289476	2R_7289476_SNP [dm3] 2R_11401971_SNP [dm6]	C	G	5.418e^-4	0.852	INTERGENIC
3L	6648701	3L_6648701_SNP [dm3] 3L_6655601_SNP [dm6]	A	G	5.418e^-4	0.852	INTERGENIC
3L	6649723	3L_6649723_INS [dm3] 3L_6656623_INS [dm6]	A	AA	5.418e^-4	0.852	INTERGENIC
3L	6649729	3L_6649729_DEL [dm3] 3L_6656629_DEL [dm6]	GGG	G	5.418e^-4	0.852	INTERGENIC
3L	6650958	3L_6650958_SNP [dm3] 3L_6657858_SNP [dm6]	C	G	5.418e^-4	0.852	INTERGENIC
3L	6652739	3L_6652739_SNP [dm3] 3L_6659639_SNP [dm6]	A	G	5.418e^-4	0.852	INTERGENIC
2R	16146993	2R_16146993_SNP [dm3] 2R_20259488_SNP [dm6]	C	T	5.418e^-4	0.852	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18922217	2R_18922217_INS [dm3] 2R_23034694_INS [dm6]	G	GTGGATCTGG	5.425e^-4	0.852	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15431580	2L_15431580_SNP [dm3] 2L_15431580_SNP [dm6]	A	T	5.428e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12331863	2L_12331863_INS [dm3] 2L_12331863_INS [dm6]	T	TCT	5.431e^-4	0.852	INTERGENIC
3L	7960063	3L_7960063_SNP [dm3] 3L_7966963_SNP [dm6]	A	G	5.435e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11989738	2L_11989738_SNP [dm3] 2L_11989738_SNP [dm6]	G	T	5.437e^-4	0.852	SYNONYMOUS_CODING zuc UPSTREAM dgt2 DOWNSTREAM CG34163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4789688	2L_4789688_SNP [dm3] 2L_4789688_SNP [dm6]	G	A	5.439e^-4	0.852	INTRON CG15630
2R	17620675	2R_17620675_SNP [dm3] 2R_21733170_SNP [dm6]	C	G	5.440e^-4	0.852	INTERGENIC
3L	2882780	3L_2882780_SNP [dm3] 3L_2882780_SNP [dm6]	T	A	5.443e^-4	0.852	UPSTREAM CR44531 DOWNSTREAM spz5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2882791	3L_2882791_SNP [dm3] 3L_2882791_SNP [dm6]	T	G	5.443e^-4	0.852	UPSTREAM CR44531 DOWNSTREAM spz5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2882792	3L_2882792_SNP [dm3] 3L_2882792_SNP [dm6]	G	T	5.443e^-4	0.852	UPSTREAM CR44531 DOWNSTREAM spz5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	7881708	2L_7881708_SNP [dm3] 2L_7881708_SNP [dm6]	A	C	5.471e^-4	0.852	INTERGENIC
3R	22231842	3R_22231842_SNP [dm3] 3R_26406120_SNP [dm6]	T	C	5.475e^-4	0.852	INTERGENIC
2R	6887471	2R_6887471_SNP [dm3] 2R_10999966_SNP [dm6]	A	C	5.493e^-4	0.852	INTRON luna
2R	18066454	2R_18066454_SNP [dm3] 2R_22178949_SNP [dm6]	G	A	5.505e^-4	0.852	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3L	11144514	3L_11144514_SNP [dm3] 3L_11151414_SNP [dm6]	A	T	5.519e^-4	0.852	UTR_5_PRIME CG32082 UPSTREAM CG6216
X	18496706	X_18496706_SNP [dm3] X_18602673_SNP [dm6]	C	T	5.528e^-4	0.852	INTERGENIC
2R	14602690	2R_14602690_SNP [dm3] 2R_18715185_SNP [dm6]	C	A	5.532e^-4	0.852	INTERGENIC
X	4633675	X_4633675_SNP [dm3] X_4739642_SNP [dm6]	G	A	5.534e^-4	0.852	INTERGENIC
2L	6581905	2L_6581905_SNP [dm3] 2L_6581905_SNP [dm6]	A	G	5.550e^-4	0.852	INTRON CG11319
2L	11198373	2L_11198373_SNP [dm3] 2L_11198373_SNP [dm6]	A	T	5.553e^-4	0.852	INTRON Ca-beta
2L	11198376	2L_11198376_SNP [dm3] 2L_11198376_SNP [dm6]	A	T	5.553e^-4	0.852	INTRON Ca-beta
2L	11198377	2L_11198377_SNP [dm3] 2L_11198377_SNP [dm6]	A	T	5.553e^-4	0.852	INTRON Ca-beta
2L	11198379	2L_11198379_SNP [dm3] 2L_11198379_SNP [dm6]	A	G	5.553e^-4	0.852	INTRON Ca-beta
2L	11198381	2L_11198381_DEL [dm3] 2L_11198381_DEL [dm6]	TGCA	T	5.553e^-4	0.852	INTRON Ca-beta
2L	11198399	2L_11198399_SNP [dm3] 2L_11198399_SNP [dm6]	T	A	5.553e^-4	0.852	INTRON Ca-beta
2L	11198408	2L_11198408_SNP [dm3] 2L_11198408_SNP [dm6]	C	A	5.553e^-4	0.852	INTRON Ca-beta
2L	11198412	2L_11198412_SNP [dm3] 2L_11198412_SNP [dm6]	T	C	5.553e^-4	0.852	INTRON Ca-beta
2L	11198415	2L_11198415_SNP [dm3] 2L_11198415_SNP [dm6]	T	A	5.553e^-4	0.852	INTRON Ca-beta
2L	11936821	2L_11936821_SNP [dm3] 2L_11936821_SNP [dm6]	G	A	5.555e^-4	0.852	NON_SYNONYMOUS_CODING Or33b
2L	16726738	2L_16726738_SNP [dm3] 2L_16726738_SNP [dm6]	A	C	5.561e^-4	0.852	INTRON VhaSFD
2R	13305819	2R_13305819_SNP [dm3] 2R_17418314_SNP [dm6]	G	A	5.572e^-4	0.852	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	13785943	2R_13785943_SNP [dm3] 2R_17898438_SNP [dm6]	C	T	5.578e^-4	0.852	INTRON Elk
2R	14162118	2R_14162118_SNP [dm3] 2R_18274613_SNP [dm6]	T	A	5.578e^-4	0.852	DOWNSTREAM Ote INTERGENIC
2R	5941452	2R_5941452_SNP [dm3] 2R_10053947_SNP [dm6]	T	C	5.578e^-4	0.852	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
2R	5941456	2R_5941456_DEL [dm3] 2R_10053951_DEL [dm6]	CAGACTA	T	5.578e^-4	0.852	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3L	13336852	3L_13336852_SNP [dm3] 3L_13343752_SNP [dm6]	T	C	5.578e^-4	0.852	EXON CR44559
3L	292059	3L_292059_SNP [dm3] 3L_292059_SNP [dm6]	T	A	5.578e^-4	0.852	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3L	292069	3L_292069_SNP [dm3] 3L_292069_SNP [dm6]	T	C	5.578e^-4	0.852	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3L	726020	3L_726020_DEL [dm3] 3L_726020_DEL [dm6]	CTTCTGAA	G	5.578e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	7951411	3L_7951411_DEL [dm3] 3L_7958311_DEL [dm6]	TT	T	5.578e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7951431	3L_7951431_DEL [dm3] 3L_7958331_DEL [dm6]	TG	A	5.578e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17710059	3R_17710059_SNP [dm3] 3R_21884337_SNP [dm6]	C	T	5.578e^-4	0.852	NON_SYNONYMOUS_CODING fit UPSTREAM CR45046 DOWNSTREAM CG17819 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5735347	3R_5735347_SNP [dm3] 3R_9909625_SNP [dm6]	T	C	5.578e^-4	0.852	INTRON Glut4EF	TF binding site mE1_TFBS_inv
X	10087906	X_10087906_SNP [dm3] X_10193873_SNP [dm6]	T	A	5.578e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
X	10087941	X_10087941_SNP [dm3] X_10193908_SNP [dm6]	G	A	5.578e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
X	10087955	X_10087955_SNP [dm3] X_10193922_SNP [dm6]	A	G	5.578e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
X	10087963	X_10087963_SNP [dm3] X_10193930_SNP [dm6]	T	A	5.578e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
X	10087986	X_10087986_SNP [dm3] X_10193953_SNP [dm6]	T	A	5.578e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
X	10087996	X_10087996_INS [dm3] X_10193963_INS [dm6]	A	AA	5.578e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
X	19617905	X_19617905_SNP [dm3] X_19723872_SNP [dm6]	C	T	5.578e^-4	0.852	SPLICE_SITE_REGION CG12531 INTRON CG12531
X	19617968	X_19617968_SNP [dm3] X_19723935_SNP [dm6]	C	T	5.578e^-4	0.852	INTRON CG12531
X	20587203	X_20587203_SNP [dm3] X_20716176_SNP [dm6]	A	G	5.578e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6569012	X_6569012_SNP [dm3] X_6674979_SNP [dm6]	A	G	5.578e^-4	0.852	SYNONYMOUS_CODING Mcm6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5857231	2R_5857231_SNP [dm3] 2R_9969726_SNP [dm6]	A	G	5.580e^-4	0.852	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11760825	2L_11760825_SNP [dm3] 2L_11760825_SNP [dm6]	G	C	5.585e^-4	0.852	INTERGENIC
X	20320082	X_20320082_SNP [dm3] X_20449055_SNP [dm6]	C	A	5.593e^-4	0.852	UPSTREAM CG32506 INTERGENIC
2L	2757071	2L_2757071_SNP [dm3] 2L_2757071_SNP [dm6]	T	C	5.596e^-4	0.852	UTR_3_PRIME Bacc DOWNSTREAM Bacc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	13469978	3R_13469978_SNP [dm3] 3R_17644256_SNP [dm6]	G	A	5.633e^-4	0.852	UPSTREAM CG43175 INTRON CG43175
2L	16424282	2L_16424282_SNP [dm3] 2L_16424282_SNP [dm6]	C	T	5.638e^-4	0.852	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11118003	2L_11118003_SNP [dm3] 2L_11118003_SNP [dm6]	C	A	5.638e^-4	0.852	NON_SYNONYMOUS_CODING CG6230	TF binding site mE1_TFBS_cad
2L	12035062	2L_12035062_SNP [dm3] 2L_12035062_SNP [dm6]	A	G	5.639e^-4	0.852	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4782236	3R_4782236_SNP [dm3] 3R_8956514_SNP [dm6]	A	C	5.661e^-4	0.852	INTRON CG11966
2L	3631500	2L_3631500_INS [dm3] 2L_3631500_INS [dm6]	A	AATAACA	5.662e^-4	0.852	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	20936134	2L_20936134_SNP [dm3] 2L_20936134_SNP [dm6]	C	A	5.668e^-4	0.852	INTERGENIC
3L	7187025	3L_7187025_SNP [dm3] 3L_7193925_SNP [dm6]	C	A	5.674e^-4	0.852	INTERGENIC
2L	14753387	2L_14753387_SNP [dm3] 2L_14753387_SNP [dm6]	T	A	5.677e^-4	0.852	INTERGENIC
3R	19946201	3R_19946201_SNP [dm3] 3R_24120479_SNP [dm6]	T	C	5.678e^-4	0.852	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_chinmo
2R	16834143	2R_16834143_SNP [dm3] 2R_20946638_SNP [dm6]	T	A	5.679e^-4	0.852	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	13216287	2L_13216287_SNP [dm3] 2L_13216287_SNP [dm6]	A	G	5.683e^-4	0.852	UPSTREAM kek4 DOWNSTREAM CG9426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11198374	2L_11198374_SNP [dm3] 2L_11198374_SNP [dm6]	A	T	5.695e^-4	0.852	INTRON Ca-beta
2L	11198389	2L_11198389_SNP [dm3] 2L_11198389_SNP [dm6]	A	T	5.695e^-4	0.852	INTRON Ca-beta
3L	9633254	3L_9633254_SNP [dm3] 3L_9640154_SNP [dm6]	T	C	5.696e^-4	0.852	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	16405439	2L_16405439_SNP [dm3] 2L_16405439_SNP [dm6]	A	C	5.698e^-4	0.852	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16834000	3R_16834000_SNP [dm3] 3R_21008278_SNP [dm6]	C	A	5.704e^-4	0.852	INTRON Calx
3R	15045578	3R_15045578_DEL [dm3] 3R_19219856_DEL [dm6]	TA	T	5.714e^-4	0.852	INTRON vib
2R	17253958	2R_17253958_SNP [dm3] 2R_21366453_SNP [dm6]	G	A	5.743e^-4	0.852	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17278372	2R_17278372_SNP [dm3] 2R_21390867_SNP [dm6]	C	T	5.745e^-4	0.852	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2L	1563604	2L_1563604_SNP [dm3] 2L_1563604_SNP [dm6]	G	A	5.746e^-4	0.852	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4626628	3L_4626628_SNP [dm3] 3L_4626628_SNP [dm6]	C	A	5.754e^-4	0.852	UPSTREAM Rpd3 & 1 other EXON CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18981875	2L_18981875_SNP [dm3] 2L_18981875_SNP [dm6]	C	T	5.763e^-4	0.852	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21964742	X_21964742_SNP [dm3] X_22562906_SNP [dm6]	T	A	5.763e^-4	0.852	INTERGENIC
X	21975973	X_21975973_INS [dm3] X_22574137_INS [dm6]	T	TAAG	5.763e^-4	0.852	INTERGENIC	transposable element FlyBase
X	21975976	X_21975976_SNP [dm3] X_22574140_SNP [dm6]	C	A	5.763e^-4	0.852	INTERGENIC	transposable element FlyBase
X	21976081	X_21976081_DEL [dm3] X_22574245_DEL [dm6]	AA	A	5.763e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	7951403	3L_7951403_SNP [dm3] 3L_7958303_SNP [dm6]	G	C	5.768e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7951409	3L_7951409_SNP [dm3] 3L_7958309_SNP [dm6]	A	G	5.768e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15679723	2R_15679723_SNP [dm3] 2R_19792218_SNP [dm6]	T	A	5.770e^-4	0.852	INTERGENIC
3L	1550493	3L_1550493_SNP [dm3] 3L_1550493_SNP [dm6]	G	C	5.790e^-4	0.852	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8942535	2R_8942535_SNP [dm3] 2R_13055030_SNP [dm6]	C	T	5.792e^-4	0.852	DOWNSTREAM Drl-2 INTERGENIC
2L	12631496	2L_12631496_SNP [dm3] 2L_12631496_SNP [dm6]	A	T	5.800e^-4	0.852	INTRON Ref2
2L	16675758	2L_16675758_SNP [dm3] 2L_16675758_SNP [dm6]	G	T	5.803e^-4	0.852	INTRON Trpgamma
3R	19818871	3R_19818871_SNP [dm3] 3R_23993149_SNP [dm6]	C	A	5.804e^-4	0.852	UPSTREAM Rab7 & 1 other INTRON Rab7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	22225224	3R_22225224_SNP [dm3] 3R_26399502_SNP [dm6]	T	G	5.804e^-4	0.852	INTERGENIC
2R	8444193	2R_8444193_SNP [dm3] 2R_12556688_SNP [dm6]	A	T	5.805e^-4	0.852	NON_SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4806075	2R_4806075_SNP [dm3] 2R_8918570_SNP [dm6]	C	T	5.815e^-4	0.852	DOWNSTREAM CG8248 & 1 other INTRON CG34219
2L	2088482	2L_2088482_SNP [dm3] 2L_2088482_SNP [dm6]	A	C	5.834e^-4	0.852	INTRON dpr3
3R	7855700	3R_7855700_DEL [dm3] 3R_12029978_DEL [dm6]	TGCTCGAAAGATATTTTAGT...	T	5.839e^-4	0.852	UTR_5_PRIME CG42505 & 1 other UTR_3_PRIME CG31358
3L	13891316	3L_13891316_SNP [dm3] 3L_13898216_SNP [dm6]	A	C	5.842e^-4	0.852	INTRON dysc
2L	10345140	2L_10345140_SNP [dm3] 2L_10345140_SNP [dm6]	A	T	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10345143	2L_10345143_SNP [dm3] 2L_10345143_SNP [dm6]	T	G	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10345148	2L_10345148_MNP [dm3] 2L_10345148_MNP [dm6]	GTC	TAG	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10345155	2L_10345155_MNP [dm3] 2L_10345155_MNP [dm6]	CGC	AAA	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10345163	2L_10345163_MNP [dm3] 2L_10345163_MNP [dm6]	TCT	CGC	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345169	2L_10345169_INS [dm3] 2L_10345169_INS [dm6]	T	TTATATTTGATATTA...	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345174	2L_10345174_SNP [dm3] 2L_10345174_SNP [dm6]	G	A	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345177	2L_10345177_SNP [dm3] 2L_10345177_SNP [dm6]	C	T	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345183	2L_10345183_SNP [dm3] 2L_10345183_SNP [dm6]	G	A	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345185	2L_10345185_SNP [dm3] 2L_10345185_SNP [dm6]	A	C	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345198	2L_10345198_DEL [dm3] 2L_10345198_DEL [dm6]	TTG	T	5.860e^-4	0.852	DOWNSTREAM Sps2 INTRON CG5022	TF binding site mE1_TFBS_HSA
2L	10345223	2L_10345223_INS [dm3] 2L_10345223_INS [dm6]	A	ATTAAACAC	5.860e^-4	0.852	INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17599406	2R_17599406_DEL [dm3] 2R_21711901_DEL [dm6]	AAACCACGGTT...	A	5.869e^-4	0.852	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4421253	2L_4421253_SNP [dm3] 2L_4421253_SNP [dm6]	G	A	5.887e^-4	0.852	INTRON CG15431	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13228691	2R_13228691_SNP [dm3] 2R_17341186_SNP [dm6]	A	T	5.888e^-4	0.852	INTRON mbl
2L	11919178	2L_11919178_SNP [dm3] 2L_11919178_SNP [dm6]	A	T	5.890e^-4	0.852	INTRON Pde1c
2L	11919181	2L_11919181_SNP [dm3] 2L_11919181_SNP [dm6]	T	A	5.890e^-4	0.852	INTRON Pde1c
3L	3931026	3L_3931026_SNP [dm3] 3L_3931026_SNP [dm6]	C	T	5.894e^-4	0.852	INTRON Eip63F-1
2L	10644288	2L_10644288_SNP [dm3] 2L_10644288_SNP [dm6]	A	C	5.902e^-4	0.852	DOWNSTREAM CG31872 INTRON CG18284
3L	5248260	3L_5248260_SNP [dm3] 3L_5255160_SNP [dm6]	T	C	5.920e^-4	0.852	INTRON shep
2R	16936643	2R_16936643_SNP [dm3] 2R_21049138_SNP [dm6]	G	T	5.941e^-4	0.852	DOWNSTREAM shg INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10457051	2L_10457051_SNP [dm3] 2L_10457051_SNP [dm6]	A	C	5.942e^-4	0.852	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11545715	2R_11545715_SNP [dm3] 2R_15658210_SNP [dm6]	T	C	5.946e^-4	0.852	SYNONYMOUS_CODING fus DOWNSTREAM CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13937322	2R_13937322_SNP [dm3] 2R_18049817_SNP [dm6]	C	T	5.948e^-4	0.852	UTR_5_PRIME CG14495 UPSTREAM CG14495 DOWNSTREAM CG34005 & 1 other
3L	3512012	3L_3512012_SNP [dm3] 3L_3512012_SNP [dm6]	C	G	5.959e^-4	0.852	SYNONYMOUS_CODING ImpE2	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA
3R	24610428	3R_24610428_SNP [dm3] 3R_28784706_SNP [dm6]	G	A	5.967e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16465028	2L_16465028_SNP [dm3] 2L_16465028_SNP [dm6]	A	T	5.968e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
3L	9634098	3L_9634098_SNP [dm3] 3L_9640998_SNP [dm6]	T	A	5.975e^-4	0.852	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad
3R	10999226	3R_10999226_SNP [dm3] 3R_15173504_SNP [dm6]	G	T	5.978e^-4	0.852	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17000635	3R_17000635_SNP [dm3] 3R_21174913_SNP [dm6]	A	T	5.982e^-4	0.852	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7867128	X_7867128_SNP [dm3] X_7973095_SNP [dm6]	T	C	5.985e^-4	0.852	INTRON sn	TF binding site mE1_TFBS_HSA
2L	10422409	2L_10422409_SNP [dm3] 2L_10422409_SNP [dm6]	T	G	5.996e^-4	0.852	SYNONYMOUS_CODING pie UPSTREAM CG5168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	10422412	2L_10422412_SNP [dm3] 2L_10422412_SNP [dm6]	C	T	5.996e^-4	0.852	SYNONYMOUS_CODING pie UPSTREAM CG5168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	5720613	3R_5720613_SNP [dm3] 3R_9894891_SNP [dm6]	T	A	5.997e^-4	0.852	INTRON Glut4EF	TF binding site mE1_TFBS_inv
3R	23463495	3R_23463495_SNP [dm3] 3R_27637773_SNP [dm6]	A	G	6.004e^-4	0.852	INTRON Mtl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16405598	2L_16405598_SNP [dm3] 2L_16405598_SNP [dm6]	C	T	6.027e^-4	0.852	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	17974126	2L_17974126_SNP [dm3] 2L_17974126_SNP [dm6]	C	T	6.039e^-4	0.852	UTR_3_PRIME CG5674 INTRON btv
2L	9127573	2L_9127573_SNP [dm3] 2L_9127573_SNP [dm6]	A	T	6.054e^-4	0.852	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	16424533	2L_16424533_SNP [dm3] 2L_16424533_SNP [dm6]	T	C	6.056e^-4	0.852	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6359962	3R_6359962_SNP [dm3] 3R_10534240_SNP [dm6]	G	C	6.059e^-4	0.852	INTRON hth
2R	20411422	2R_20411422_SNP [dm3] 2R_24523899_SNP [dm6]	G	C	6.066e^-4	0.852	UTR_3_PRIME CG4612
2R	8788166	2R_8788166_SNP [dm3] 2R_12900661_SNP [dm6]	C	T	6.075e^-4	0.852	INTERGENIC
3L	4608297	3L_4608297_SNP [dm3] 3L_4608297_SNP [dm6]	T	A	6.076e^-4	0.852	INTRON Src64B
3R	14273687	3R_14273687_SNP [dm3] 3R_18447965_SNP [dm6]	G	T	6.103e^-4	0.852	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl
3R	25344450	3R_25344450_SNP [dm3] 3R_29518728_SNP [dm6]	A	G	6.106e^-4	0.852	INTERGENIC
2L	10549444	2L_10549444_SNP [dm3] 2L_10549444_SNP [dm6]	A	G	6.111e^-4	0.852	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2594514	3L_2594514_SNP [dm3] 3L_2594514_SNP [dm6]	C	A	6.125e^-4	0.852	INTRON dos	TF binding site mE1_TFBS_cad
3L	4660161	3L_4660161_SNP [dm3] 3L_4660161_SNP [dm6]	T	C	6.132e^-4	0.852	SYNONYMOUS_CODING axo
3R	13888907	3R_13888907_SNP [dm3] 3R_18063185_SNP [dm6]	T	G	6.142e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	16744306	3R_16744306_SNP [dm3] 3R_20918584_SNP [dm6]	A	T	6.150e^-4	0.852	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
2L	6177517	2L_6177517_DEL [dm3] 2L_6177517_DEL [dm6]	AAAGATACTATGCCAGTA...	A	6.154e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18175405	X_18175405_SNP [dm3] X_18281372_SNP [dm6]	C	T	6.157e^-4	0.852	INTRON upd3	TF binding site mE1_TFBS_sens
2L	8084353	2L_8084353_SNP [dm3] 2L_8084353_SNP [dm6]	T	G	6.165e^-4	0.852	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1088298	3L_1088298_SNP [dm3] 3L_1088298_SNP [dm6]	T	C	6.168e^-4	0.852	INTRON bab1
3L	15313574	3L_15313574_SNP [dm3] 3L_15320474_SNP [dm6]	G	A	6.176e^-4	0.852	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12922446	3R_12922446_SNP [dm3] 3R_17096724_SNP [dm6]	G	A	6.180e^-4	0.852	INTRON cher
3L	3563744	3L_3563744_SNP [dm3] 3L_3563744_SNP [dm6]	A	T	6.195e^-4	0.852	INTRON Eip63E
3L	995213	3L_995213_SNP [dm3] 3L_995213_SNP [dm6]	C	T	6.211e^-4	0.852	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
X	10088426	X_10088426_SNP [dm3] X_10194393_SNP [dm6]	A	T	6.217e^-4	0.852	UTR_3_PRIME CG43902 INTRON CR44894
3R	15046656	3R_15046656_SNP [dm3] 3R_19220934_SNP [dm6]	T	G	6.224e^-4	0.852	INTRON vib
3R	15046675	3R_15046675_SNP [dm3] 3R_19220953_SNP [dm6]	T	G	6.224e^-4	0.852	INTRON vib
3L	7957921	3L_7957921_SNP [dm3] 3L_7964821_SNP [dm6]	G	C	6.229e^-4	0.852	INTERGENIC
2R	17602364	2R_17602364_SNP [dm3] 2R_21714859_SNP [dm6]	C	T	6.241e^-4	0.852	INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	16957563	X_16957563_SNP [dm3] X_17063530_SNP [dm6]	C	A	6.246e^-4	0.852	INTRON CG45002
3R	7997957	3R_7997957_SNP [dm3] 3R_12172235_SNP [dm6]	G	A	6.259e^-4	0.852	INTERGENIC
3L	9633289	3L_9633289_SNP [dm3] 3L_9640189_SNP [dm6]	C	T	6.273e^-4	0.852	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	995590	2L_995590_SNP [dm3] 2L_995590_SNP [dm6]	C	G	6.279e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19314714	X_19314714_SNP [dm3] X_19420681_SNP [dm6]	C	A	6.282e^-4	0.852	INTRON kek5
2L	20518010	2L_20518010_SNP [dm3] 2L_20518010_SNP [dm6]	T	A	6.286e^-4	0.852	INTERGENIC
X	9818315	X_9818315_SNP [dm3] X_9924282_SNP [dm6]	A	G	6.289e^-4	0.852	INTERGENIC
X	13934003	X_13934003_SNP [dm3] X_14039970_SNP [dm6]	G	A	6.294e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13934019	X_13934019_SNP [dm3] X_14039986_SNP [dm6]	A	C	6.294e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16066195	2R_16066195_SNP [dm3] 2R_20178690_SNP [dm6]	C	T	6.300e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cnc
X	15461720	X_15461720_SNP [dm3] X_15567687_SNP [dm6]	T	G	6.304e^-4	0.852	INTERGENIC
3L	5248294	3L_5248294_SNP [dm3] 3L_5255194_SNP [dm6]	T	A	6.307e^-4	0.852	INTRON shep
2L	3391578	2L_3391578_SNP [dm3] 2L_3391578_SNP [dm6]	A	G	6.315e^-4	0.852	INTERGENIC
2R	5414567	2R_5414567_SNP [dm3] 2R_9527062_SNP [dm6]	T	C	6.335e^-4	0.852	INTRON brp
X	8423895	X_8423895_SNP [dm3] X_8529862_SNP [dm6]	A	C	6.348e^-4	0.852	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3R	10275758	3R_10275758_SNP [dm3] 3R_14450036_SNP [dm6]	C	T	6.352e^-4	0.852	INTRON cv-c
X	20251811	X_20251811_SNP [dm3] X_20380784_SNP [dm6]	C	T	6.352e^-4	0.852	INTERGENIC
2L	19471435	2L_19471435_SNP [dm3] 2L_19471435_SNP [dm6]	A	G	6.353e^-4	0.852	UPSTREAM CR45723 EXON CR43839
2L	11198447	2L_11198447_SNP [dm3] 2L_11198447_SNP [dm6]	T	A	6.364e^-4	0.852	INTRON Ca-beta
2L	3869095	2L_3869095_SNP [dm3] 2L_3869095_SNP [dm6]	T	C	6.365e^-4	0.852	UPSTREAM Cep97 INTRON Cep97	TF binding site mE1_TFBS_sens
X	11117560	X_11117560_INS [dm3] X_11223527_INS [dm6]	C	CTCA	6.374e^-4	0.852	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
2R	12578277	2R_12578277_SNP [dm3] 2R_16690772_SNP [dm6]	C	G	6.392e^-4	0.852	UPSTREAM CG5210 INTRON CG30463
3L	5137683	3L_5137683_SNP [dm3] 3L_5144583_SNP [dm6]	T	C	6.403e^-4	0.852	NON_SYNONYMOUS_CODING CG10671 DOWNSTREAM CG4623	TF binding site mE1_TFBS_chinmo
2R	4034976	2R_4034976_SNP [dm3] 2R_8147471_SNP [dm6]	C	T	6.412e^-4	0.852	SYNONYMOUS_CODING kermit INTRON Lpin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7316154	2R_7316154_SNP [dm3] 2R_11428649_SNP [dm6]	A	G	6.424e^-4	0.852	UPSTREAM Drip INTRON Drip
X	21432707	X_21432707_SNP [dm3] X_21561680_SNP [dm6]	C	A	6.430e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1076542	3L_1076542_INS [dm3] 3L_1076542_INS [dm6]	G	GA	6.435e^-4	0.852	INTRON bab1
2L	10422394	2L_10422394_SNP [dm3] 2L_10422394_SNP [dm6]	A	G	6.438e^-4	0.852	SYNONYMOUS_CODING pie UPSTREAM CG5168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	22113164	X_22113164_SNP [dm3] X_22711328_SNP [dm6]	G	A	6.468e^-4	0.852	INTRON CR44997	transposable element FlyBase
3L	16715391	3L_16715391_SNP [dm3] 3L_16722291_SNP [dm6]	A	G	6.474e^-4	0.852	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11981778	2L_11981778_SNP [dm3] 2L_11981778_SNP [dm6]	A	C	6.479e^-4	0.852	INTRON CG16965
2L	5198202	2L_5198202_SNP [dm3] 2L_5198202_SNP [dm6]	T	C	6.483e^-4	0.852	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14282913	2R_14282913_SNP [dm3] 2R_18395408_SNP [dm6]	A	G	6.489e^-4	0.852	DOWNSTREAM Idgf5 INTERGENIC
3L	17821644	3L_17821644_DEL [dm3] 3L_17828544_DEL [dm6]	AAAT	G	6.491e^-4	0.852	INTRON Grd
3R	16487135	3R_16487135_SNP [dm3] 3R_20661413_SNP [dm6]	T	A	6.495e^-4	0.852	INTERGENIC
2L	4652351	2L_4652351_SNP [dm3] 2L_4652351_SNP [dm6]	G	C	6.497e^-4	0.852	UTR_3_PRIME CG3355 INTRON CG3355	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20319561	X_20319561_SNP [dm3] X_20448534_SNP [dm6]	T	G	6.498e^-4	0.852	UPSTREAM CG32506 INTERGENIC
3R	12922202	3R_12922202_SNP [dm3] 3R_17096480_SNP [dm6]	T	A	6.499e^-4	0.852	UPSTREAM cher INTRON cher
3R	15023087	3R_15023087_SNP [dm3] 3R_19197365_SNP [dm6]	T	A	6.503e^-4	0.852	INTRON CG31475
3R	13459859	3R_13459859_SNP [dm3] 3R_17634137_SNP [dm6]	T	G	6.504e^-4	0.852	INTRON CG43175
3R	22635840	3R_22635840_SNP [dm3] 3R_26810118_SNP [dm6]	A	T	6.509e^-4	0.852	INTRON Tl
2R	14572926	2R_14572926_SNP [dm3] 2R_18685421_SNP [dm6]	T	C	6.517e^-4	0.852	NON_SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
3L	10557606	3L_10557606_SNP [dm3] 3L_10564506_SNP [dm6]	G	A	6.532e^-4	0.852	INTRON A2bp1
3L	4136034	3L_4136034_SNP [dm3] 3L_4136034_SNP [dm6]	T	C	6.554e^-4	0.852	START_GAINED RfC4 UTR_5_PRIME RfC4 DOWNSTREAM Rop	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	12286699	3L_12286699_SNP [dm3] 3L_12293599_SNP [dm6]	G	A	6.558e^-4	0.852	INTRON CG4328
3R	11126575	3R_11126575_SNP [dm3] 3R_15300853_SNP [dm6]	C	A	6.562e^-4	0.852	INTRON Tm1
3R	16025563	3R_16025563_SNP [dm3] 3R_20199841_SNP [dm6]	C	T	6.562e^-4	0.852	INTERGENIC
3R	7734419	3R_7734419_SNP [dm3] 3R_11908697_SNP [dm6]	A	C	6.567e^-4	0.852	INTRON Cad87A
2R	13746404	2R_13746404_SNP [dm3] 2R_17858899_SNP [dm6]	A	C	6.579e^-4	0.852	INTRON olf186-F
3R	17185822	3R_17185822_SNP [dm3] 3R_21360100_SNP [dm6]	C	T	6.580e^-4	0.852	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8513443	2R_8513443_SNP [dm3] 2R_12625938_SNP [dm6]	C	T	6.593e^-4	0.852	UTR_5_PRIME CG17760 DOWNSTREAM CG30054
3L	9633314	3L_9633314_DEL [dm3] 3L_9640214_DEL [dm6]	TGCACAAACGATATGCACAT...	T	6.593e^-4	0.852	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

pc_Progeny_P1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results